Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/o/openstructure/openstructure_2.2.0-6_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/openstructure-2.2.0-6uty2fp1n/openstructure_2.2.0-6_amd64.buildinfo Get source package info: openstructure=2.2.0-6 Source URL: http://snapshot.notset.fr/mr/package/openstructure/2.2.0-6/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.49 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 clustalw=2.1+lgpl-7 cmake=3.18.4-2 cmake-data=3.18.4-2 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.3 debianutils=4.11.2 dh-autoreconf=20 dh-python=4.20201102 dh-strip-nondeterminism=1.11.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dssp=4.0.0-2 dwz=0.13+20210201-1 file=1:5.39-3 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-lyx=2.3.6-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 gfortran-10=10.2.1-6 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-2 hostname=3.23 ibverbs-providers=33.1-1 icu-devtools=67.1-6 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbinutils=2.35.1-7 libblas3=3.9.0-3 libblkid1=2.36.1-7 libboost-all-dev=1.74.0.3 libboost-atomic-dev=1.74.0.3 libboost-atomic1.74-dev=1.74.0-8 libboost-atomic1.74.0=1.74.0-8 libboost-chrono-dev=1.74.0.3 libboost-chrono1.74-dev=1.74.0-8 libboost-chrono1.74.0=1.74.0-8 libboost-container-dev=1.74.0.3 libboost-container1.74-dev=1.74.0-8 libboost-container1.74.0=1.74.0-8 libboost-context-dev=1.74.0.3 libboost-context1.74-dev=1.74.0-8 libboost-context1.74.0=1.74.0-8 libboost-coroutine-dev=1.74.0.3 libboost-coroutine1.74-dev=1.74.0-8 libboost-coroutine1.74.0=1.74.0-8 libboost-date-time-dev=1.74.0.3 libboost-date-time1.74-dev=1.74.0-8 libboost-date-time1.74.0=1.74.0-8 libboost-dev=1.74.0.3 libboost-exception-dev=1.74.0.3 libboost-exception1.74-dev=1.74.0-8 libboost-fiber-dev=1.74.0.3 libboost-fiber1.74-dev=1.74.0-8 libboost-fiber1.74.0=1.74.0-8 libboost-filesystem-dev=1.74.0.3 libboost-filesystem1.74-dev=1.74.0-8 libboost-filesystem1.74.0=1.74.0-8 libboost-graph-dev=1.74.0.3 libboost-graph-parallel-dev=1.74.0.3 libboost-graph-parallel1.74-dev=1.74.0-8 libboost-graph-parallel1.74.0=1.74.0-8 libboost-graph1.74-dev=1.74.0-8 libboost-graph1.74.0=1.74.0-8 libboost-iostreams-dev=1.74.0.3 libboost-iostreams1.74-dev=1.74.0-8 libboost-iostreams1.74.0=1.74.0-8 libboost-locale-dev=1.74.0.3 libboost-locale1.74-dev=1.74.0-8 libboost-locale1.74.0=1.74.0-8 libboost-log-dev=1.74.0.3 libboost-log1.74-dev=1.74.0-8 libboost-log1.74.0=1.74.0-8 libboost-math-dev=1.74.0.3 libboost-math1.74-dev=1.74.0-8 libboost-math1.74.0=1.74.0-8 libboost-mpi-dev=1.74.0.3 libboost-mpi-python-dev=1.74.0.3 libboost-mpi-python1.74-dev=1.74.0-8 libboost-mpi-python1.74.0=1.74.0-8 libboost-mpi1.74-dev=1.74.0-8 libboost-mpi1.74.0=1.74.0-8 libboost-nowide-dev=1.74.0.3 libboost-nowide1.74-dev=1.74.0-8 libboost-nowide1.74.0=1.74.0-8 libboost-numpy-dev=1.74.0.3 libboost-numpy1.74-dev=1.74.0-8 libboost-numpy1.74.0=1.74.0-8 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-8 libboost-program-options1.74.0=1.74.0-8 libboost-python-dev=1.74.0.3 libboost-python1.74-dev=1.74.0-8 libboost-python1.74.0=1.74.0-8 libboost-random-dev=1.74.0.3 libboost-random1.74-dev=1.74.0-8 libboost-random1.74.0=1.74.0-8 libboost-regex-dev=1.74.0.3 libboost-regex1.74-dev=1.74.0-8 libboost-regex1.74.0=1.74.0-8 libboost-serialization-dev=1.74.0.3 libboost-serialization1.74-dev=1.74.0-8 libboost-serialization1.74.0=1.74.0-8 libboost-stacktrace-dev=1.74.0.3 libboost-stacktrace1.74-dev=1.74.0-8 libboost-stacktrace1.74.0=1.74.0-8 libboost-system-dev=1.74.0.3 libboost-system1.74-dev=1.74.0-8 libboost-system1.74.0=1.74.0-8 libboost-test-dev=1.74.0.3 libboost-test1.74-dev=1.74.0-8 libboost-test1.74.0=1.74.0-8 libboost-thread-dev=1.74.0.3 libboost-thread1.74-dev=1.74.0-8 libboost-thread1.74.0=1.74.0-8 libboost-timer-dev=1.74.0.3 libboost-timer1.74-dev=1.74.0-8 libboost-timer1.74.0=1.74.0-8 libboost-tools-dev=1.74.0.3 libboost-type-erasure-dev=1.74.0.3 libboost-type-erasure1.74-dev=1.74.0-8 libboost-type-erasure1.74.0=1.74.0-8 libboost-wave-dev=1.74.0.3 libboost-wave1.74-dev=1.74.0-8 libboost-wave1.74.0=1.74.0-8 libboost1.74-dev=1.74.0-8 libboost1.74-tools-dev=1.74.0-8 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcbor0=0.5.0+dfsg-2 libcc1-0=10.2.1-6 libcifpp1=1.0.1-3 libcom-err2=1.45.7-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libcups2=2.3.3op2-2 libcurl4=7.74.0-1 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-1 libdebconfclient0=0.256 libdebhelper-perl=13.3.3 libdeflate-dev=1.7-1 libdeflate0=1.7-1 libdouble-conversion3=3.1.5-6.1 libdpkg-perl=1.20.7.1 libdrm-amdgpu1=2.4.104-1 libdrm-common=2.4.104-1 libdrm-intel1=2.4.104-1 libdrm-nouveau2=2.4.104-1 libdrm-radeon1=2.4.104-1 libdrm2=2.4.104-1 libedit2=3.1-20191231-2+b1 libegl-dev=1.3.2-1 libegl-mesa0=20.3.4-1 libegl1=1.3.2-1 libeigen3-dev=3.3.9-2 libelf1=0.183-1 libevdev2=1.11.0+dfsg-1 libevent-2.1-7=2.1.12-stable-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-dev=2.1.12-stable-1 libevent-extra-2.1-7=2.1.12-stable-1 libevent-openssl-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libfabric1=1.11.0-2 libffi7=3.3-5 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfido2-1=1.6.0-2 libfile-stripnondeterminism-perl=1.11.0-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.4+dfsg-1 libgbm1=20.3.4-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgfortran-10-dev=10.2.1-6 libgfortran5=10.2.1-6 libgl-dev=1.3.2-1 libgl1=1.3.2-1 libgl1-mesa-dev=20.3.4-1 libgl1-mesa-dri=20.3.4-1 libglapi-mesa=20.3.4-1 libgles-dev=1.3.2-1 libgles1=1.3.2-1 libgles2=1.3.2-1 libglib2.0-0=2.66.6-2 libglu1-mesa=9.0.1-1 libglu1-mesa-dev=9.0.1-1 libglvnd-dev=1.3.2-1 libglvnd0=1.3.2-1 libglx-dev=1.3.2-1 libglx-mesa0=20.3.4-1 libglx0=1.3.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-5 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-4 libgudev-1.0-0=234-1 libharfbuzz0b=2.7.4-1 libhogweed6=3.7-2 libhwloc-dev=2.4.1~rc2+dfsg-2 libhwloc-plugins=2.4.1~rc2+dfsg-2 libhwloc15=2.4.1~rc2+dfsg-2 libibverbs-dev=33.1-1 libibverbs1=33.1-1 libice6=2:1.0.10-1 libicu-dev=67.1-6 libicu67=67.1-6 libidn2-0=2.3.0-5 libimagequant0=2.12.2-1.1 libinput-bin=1.16.4-3 libinput10=1.16.4-3 libisl23=0.23-1 libitm1=10.2.1-6 libjbig-dev=2.1-3.1+b2 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.0.5-2 libjpeg62-turbo=1:2.0.5-2 libjpeg62-turbo-dev=1:2.0.5-2 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui=1.12.1+dfsg-8 libjsoncpp24=1.9.4-4 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 liblbfgsb0=3.0+dfsg.3-9 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.57+dfsg-1 libllvm11=1:11.0.1-2 liblsan0=10.2.1-6 libltdl-dev=2.4.6-15 libltdl7=2.4.6-15 liblz4-1=1.9.3-1 liblzma-dev=5.2.5-1.0 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-3 libmd4c0=0.4.7-1 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpdec3=2.5.1-1 libmpfr6=4.1.0-3 libmtdev1=1.1.6-1 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnettle8=3.7-2 libnghttp2-14=1.42.0-1 libnl-3-200=3.4.0-1+b1 libnl-3-dev=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnl-route-3-dev=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma-dev=2.0.12-1+b1 libnuma1=2.0.12-1+b1 libopengl-dev=1.3.2-1 libopengl0=1.3.2-1 libopenmpi-dev=4.1.0-7 libopenmpi3=4.1.0-7 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-4 libpam-modules-bin=1.4.0-4 libpam-runtime=1.4.0-4 libpam0g=1.4.0-4 libpciaccess0=0.16-1 libpcre2-16-0=10.36-2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-2 libpipeline1=1.5.3-1 libpmix-dev=4.0.0-4 libpmix2=4.0.0-4 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libprocps8=2:3.3.17-1 libpsl5=0.21.0-1.2 libpsm-infinipath1=3.3+20.604758e7-6.1 libpsm2-2=11.2.185-1 libpthread-stubs0-dev=0.4-1 libpython3-dev=3.9.1-1 libpython3-stdlib=3.9.1-1 libpython3.9=3.9.1-4 libpython3.9-dev=3.9.1-4 libpython3.9-minimal=3.9.1-4 libpython3.9-stdlib=3.9.1-4 libqt5concurrent5=5.15.2+dfsg-4 libqt5core5a=5.15.2+dfsg-4 libqt5dbus5=5.15.2+dfsg-4 libqt5designer5=5.15.2-3 libqt5gui5=5.15.2+dfsg-4 libqt5help5=5.15.2-3 libqt5network5=5.15.2+dfsg-4 libqt5opengl5=5.15.2+dfsg-4 libqt5opengl5-dev=5.15.2+dfsg-4 libqt5printsupport5=5.15.2+dfsg-4 libqt5sql5=5.15.2+dfsg-4 libqt5test5=5.15.2+dfsg-4 libqt5widgets5=5.15.2+dfsg-4 libqt5xml5=5.15.2+dfsg-4 libquadmath0=10.2.1-6 librdmacm1=33.1-1 libreadline8=8.1-1 librhash0=1.4.1-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsensors-config=1:3.6.0-7 libsensors5=1:3.6.0-7 libsepol1=3.1-1 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.36.1-7 libsqlite3-0=3.34.1-1 libsqlite3-dev=3.34.1-1 libssh2-1=1.9.0-2 libssl1.1=1.1.1i-3 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.3-1 libtasn1-6=4.16.0-2 libtiff-dev=4.2.0-1 libtiff5=4.2.0-1 libtiffxx5=4.2.0-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libucx0=1.10.0~rc1-7 libudev1=247.3-1 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libuv1=1.40.0-1 libvulkan-dev=1.2.162.0-1 libvulkan1=1.2.162.0-1 libwacom-common=1.8-1 libwacom2=1.8-1 libwayland-client0=1.18.0-2~exp1.1 libwayland-server0=1.18.0-2~exp1.1 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libx11-6=2:1.7.0-2 libx11-data=2:1.7.0-2 libx11-dev=2:1.7.0-2 libx11-xcb1=2:1.7.0-2 libxau-dev=1:1.0.9-1 libxau6=1:1.0.9-1 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-icccm4=0.4.1-1.1 libxcb-image0=0.4.0-1+b3 libxcb-keysyms1=0.4.0-1+b2 libxcb-present0=1.14-3 libxcb-randr0=1.14-3 libxcb-render-util0=0.3.9-1+b1 libxcb-render0=1.14-3 libxcb-shape0=1.14-3 libxcb-shm0=1.14-3 libxcb-sync1=1.14-3 libxcb-util1=0.4.0-1+b1 libxcb-xfixes0=1.14-3 libxcb-xinerama0=1.14-3 libxcb-xinput0=1.14-3 libxcb-xkb1=1.14-3 libxcb1=1.14-3 libxcb1-dev=1.14-3 libxdamage1=1:1.1.5-2 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext-dev=2:1.3.3-1.1 libxext6=2:1.3.3-1.1 libxfixes3=1:5.0.3-2 libxkbcommon-x11-0=1.0.3-2 libxkbcommon0=1.0.3-2 libxml2=2.9.10+dfsg-6.3+b1 libxnvctrl0=460.32.03-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.10-1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.13-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.68 make=4.3-4 man-db=2.9.4-1 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 mpi-default-bin=1.13 mpi-default-dev=1.13 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 ocl-icd-libopencl1=2.2.14-2 openmpi-bin=4.1.0-7 openmpi-common=4.1.0-7 openssh-client=1:8.4p1-3 passwd=1:4.8.1-1 patch=2.7.6-7 perl=5.32.1-2 perl-base=5.32.1-2 perl-modules-5.32=5.32.1-2 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 procps=2:3.3.17-1 python-matplotlib-data=3.3.4-1 python3=3.9.1-1 python3-cycler=0.10.0-3 python3-dateutil=2.8.1-5 python3-decorator=4.4.2-2 python3-dev=3.9.1-1 python3-distutils=3.9.1-2 python3-kiwisolver=1.3.1-1+b1 python3-lib2to3=3.9.1-2 python3-matplotlib=3.3.4-1 python3-minimal=3.9.1-1 python3-numpy=1:1.19.5-1 python3-pil=8.1.0-1 python3-pkg-resources=52.0.0-1 python3-pyparsing=2.4.7-1 python3-pyqt5=5.15.2+dfsg-3 python3-pyqt5.sip=12.8.1-1+b2 python3-scipy=1.6.0-2 python3-six=1.15.0-2 python3.9=3.9.1-4 python3.9-dev=3.9.1-4 python3.9-minimal=3.9.1-4 qt5-qmake=5.15.2+dfsg-4 qt5-qmake-bin=5.15.2+dfsg-4 qtbase5-dev=5.15.2+dfsg-4 qtbase5-dev-tools=5.15.2+dfsg-4 qtchooser=66-2 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 shared-mime-info=2.0-1 sip-dev=4.19.24+dfsg-2 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 ttf-bitstream-vera=1.10-8.1 tzdata=2021a-1 ucf=3.0043 util-linux=2.36.1-7 voronota=1.22.3149-1 x11-common=1:7.7+21 x11proto-dev=2020.1-1 x11proto-xext-dev=2020.1-1 xkb-data=2.29-2 xorg-sgml-doctools=1:1.11-1.1 xtrans-dev=1.4.0-1 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210212T095132Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210210T084617Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210208T151116Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d openstructure=2.2.0-6 && mkdir -p /build/openstructure-VL5z08 && dpkg-source --no-check -x /*.dsc /build/openstructure-VL5z08/openstructure-2.2.0 && chown -R builduser:builduser /build/openstructure-VL5z08" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/openstructure-VL5z08/openstructure-2.2.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612949613" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/openstructure-VL5z08 /tmp/openstructure-2.2.0-6uty2fp1n bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210208T151116Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.5au_Ja0NyG as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.5au_Ja0NyG Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210208T151116Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210208T151116Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (748 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4663 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210212T095132Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210210T084617Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210208T151116Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.5au_Ja0NyG Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210212T095132Z unstable InRelease [153 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210210T084617Z unstable InRelease [153 kB] Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Hit:6 http://snapshot.notset.fr/archive/debian/20210208T151116Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:7 http://snapshot.notset.fr/archive/debian/20210212T095132Z unstable/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20210210T084617Z unstable/main amd64 Packages Ign:7 http://snapshot.notset.fr/archive/debian/20210212T095132Z unstable/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20210210T084617Z unstable/main amd64 Packages Ign:7 http://snapshot.notset.fr/archive/debian/20210212T095132Z unstable/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20210210T084617Z unstable/main amd64 Packages Get:7 http://snapshot.notset.fr/archive/debian/20210212T095132Z unstable/main amd64 Packages [11.7 MB] Get:8 http://snapshot.notset.fr/archive/debian/20210210T084617Z unstable/main amd64 Packages [11.7 MB] Fetched 46.2 MB in 38s (1219 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.5au_Ja0NyG I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d openstructure=2.2.0-6 && mkdir -p /build/openstructure-VL5z08 && dpkg-source --no-check -x /*.dsc /build/openstructure-VL5z08/openstructure-2.2.0 && chown -R builduser:builduser /build/openstructure-VL5z08"' exec /tmp/mmdebstrap.5au_Ja0NyG Reading package lists... NOTICE: 'openstructure' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/openstructure.git Please use: git clone https://salsa.debian.org/debichem-team/openstructure.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 36.2 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main openstructure 2.2.0-6 (dsc) [4366 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main openstructure 2.2.0-6 (tar) [36.2 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main openstructure 2.2.0-6 (diff) [13.4 kB] Fetched 36.2 MB in 29s (1264 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'openstructure_2.2.0-6.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting openstructure in /build/openstructure-VL5z08/openstructure-2.2.0 dpkg-source: info: unpacking openstructure_2.2.0.orig.tar.gz dpkg-source: info: unpacking openstructure_2.2.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python-dist-packages.patch dpkg-source: info: applying fix-quotes-in-ENV.patch dpkg-source: info: applying skip-network-tests.patch dpkg-source: info: applying ost-compare-structures.patch dpkg-source: info: applying ost_config.patch dpkg-source: info: applying skip-dssp-tests.patch dpkg-source: info: applying 76a5413023d8823b2cdca5d4b78d7fefd62b63c1.patch dpkg-source: info: applying da57a1f6a1c3a884321c27b438a8329725e546a5.patch dpkg-source: info: applying 5a749faedba0332e8a7be196a9bb72201fa699e9.patch dpkg-source: info: applying 9153648f1b773a1c1186d0a0ac29e78b659cd1f8.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/openstructure-VL5z08/openstructure-2.2.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612949613" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.5au_Ja0NyG dpkg-buildpackage: info: source package openstructure dpkg-buildpackage: info: source version 2.2.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0' dh_auto_configure -- -DUBUNTU_LAYOUT=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUBUNTU_LAYOUT=ON .. -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Found Python: /usr/bin/python3.9 (found suitable version "3.9.1", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:955 (find_package) CMakeLists.txt:198 (setup_boost) -- Found Boost package: python39 CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:969 (find_package) CMakeLists.txt:198 (setup_boost) -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: unit_test_framework CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:976 (find_package) CMakeLists.txt:198 (setup_boost) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:976 (find_package) CMakeLists.txt:198 (setup_boost) -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: filesystem system CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:980 (find_package) CMakeLists.txt:198 (setup_boost) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:980 (find_package) CMakeLists.txt:198 (setup_boost) -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: iostreams regex CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:983 (find_package) CMakeLists.txt:198 (setup_boost) -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: program_options CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:986 (find_package) CMakeLists.txt:198 (setup_boost) -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: regex CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:989 (find_package) CMakeLists.txt:198 (setup_boost) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:989 (find_package) CMakeLists.txt:198 (setup_boost) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:989 (find_package) CMakeLists.txt:198 (setup_boost) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:989 (find_package) CMakeLists.txt:198 (setup_boost) -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: thread chrono date_time atomic -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.37") -- Found EIGEN: /usr/include/eigen3 (Required is at least version "3.2.0") -- Found SQLITE3: /usr/lib/x86_64-linux-gnu/libsqlite3.so (Required is at least version "3.7.13") -- Found FFTW: /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Found TIFF: /usr/lib/x86_64-linux-gnu/libtiff.so (found version "4.2.0") -- Searching for python module PyQt5 for /usr/bin/python3.9 -- Found python module PyQt5 -- Searching for python module PyQt5.sip for /usr/bin/python3.9 -- Found python module PyQt5.sip -- OpenStructure will be built with the following options: Install Prefix (-DPREFIX) : /usr RPath in install (-DUSE_RPATH) : OFF Info support (-DENABLE_INFO) : ON Graphical interface (-DENABLE_GUI) : ON OpenGL support (-DENABLE_GFX) : ON Image Processing support (-DENABLE_IMG) : ON Shader support (-DUSE_SHADER) : OFF Numpy support (-DUSE_NUMPY) : OFF SpaceNav Device support (-DENABLE_SPNAV) : OFF OpenMM support (-DENABLE_MM) : OFF OpenMM plugins (-DOPEN_MM_PLUGIN_DIR) : NONE Optimize (-DOPTIMIZE) : OFF Profiling support (-DPROFILE) : OFF Double Precision (-DUSE_DOUBLE_PRECISION) : OFF Compound Lib (-DCOMPOUND_LIB) : NONE TMAlign and TMScore (-DCOMPILE_TMTOOLS) : OFF Static Libraries (-DENABLE_STATIC) : OFF Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON Hidden object visibility (-DHIDDEN_VISIBILITY) : OFF -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0' dh_auto_build -a cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/openstructure-VL5z08/openstructure-2.2.0 -B/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/CMakeFiles /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend.internal". Scanning dependencies of target ost_conop_pymod Scanning dependencies of target subst___init__.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend.internal". Scanning dependencies of target ost_bindings_pymod make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /build/openstructure-VL5z08/openstructure-2.2.0/cmake_support/substitute.cmake make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/conop/./__init__.py make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./__init__.py Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/depend.internal". Scanning dependencies of target create_stage make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./lga.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./lga.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/./cleanup.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/conop/./cleanup.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/bin [ 0%] Built target subst___init__.py make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./hbplus.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hbplus.py make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend.internal". Scanning dependencies of target ost_db_pymod cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./msms.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./msms.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/db/./__init__.py [ 0%] Built target ost_conop_pymod cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./tmtools.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./tmtools.py make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./dssp.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./dssp.py [ 0%] Built target ost_db_pymod make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend.internal". Scanning dependencies of target ost_geom_pymod Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend.internal". Scanning dependencies of target ost_gfx_pymod cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./clustalw.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./clustalw.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gfx/./__init__.py make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/geom/./__init__.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 0%] Built target create_stage make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./utils.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./utils.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./naccess.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./naccess.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/./py_gfx_obj.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gfx/./py_gfx_obj.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./hhblits.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits.py Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/depend.internal". Scanning dependencies of target gui_images make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/images/logo-small.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/images/logo-small.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./hhblits2.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits2.py [ 0%] Built target ost_geom_pymod make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake --color= [ 0%] Built target ost_gfx_pymod cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./hhblits3.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits3.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/depend.internal". Scanning dependencies of target scene_icons [ 0%] Built target gui_images make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend.internal". Scanning dependencies of target ost_gui_pymod make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./blast.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./blast.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/add_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/add_icon.png make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./__init__.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/./init_context_menu.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_context_menu.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./cadscore.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./cadscore.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/./init_menubar.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_menubar.py Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend.internal". Scanning dependencies of target ost_gui_dng_pymod make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/dng/__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/__init__.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./kclust.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./kclust.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/close_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/dng/termuse.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/termuse.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/./init_spacenav.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_spacenav.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/./ialign.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./ialign.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/critical_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/./init_splash.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_splash.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/dng/superpositiondialog.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/superpositiondialog.py [ 0%] Built target ost_bindings_pymod cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/./trajectory_viewer.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./trajectory_viewer.py make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/delete_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/dng/init.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/init.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/./helpwidget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./helpwidget.py Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend.internal". Scanning dependencies of target ost_gui_scene_pymod make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/__init__.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/./table.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./table.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/distance_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/dng/menu.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/menu.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/./gosty_startup.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./gosty_startup.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/find_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/color_options_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/color_options_widget.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_gui_pymod make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/information_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png [ 0%] Built target ost_gui_dng_pymod make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend.internal". Scanning dependencies of target ost_img_pymod cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/color_select_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/color_select_widget.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/img/./__init__.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/map_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend.internal". Scanning dependencies of target ost_img_alg_pymod make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/img/alg/./__init__.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/combo_options_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/combo_options_widget.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/menubar_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/rigid_body_manipulator_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/cpk_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/cpk_widget.py [ 0%] Built target ost_img_alg_pymod cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/selection_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/show_sidebar_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png [ 0%] Built target ost_img_pymod make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/site_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/split_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/custom_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/custom_widget.py Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend.internal". Scanning dependencies of target ost_info_pymod Scanning dependencies of target ost_io_pymod make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/info/./__init__.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/warning_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./__init__.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/gradient_editor_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_editor_widget.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/share/icons/refresh.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/refresh.png make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/./remote.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./remote.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/gradient_info_handler.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_info_handler.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/./repository.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./repository.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/gradient_list_model.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_list_model.py [ 0%] Built target scene_icons make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend [ 0%] Built target ost_info_pymod make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake --color= make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend.internal". Scanning dependencies of target ost_mol_pymod make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/gradient_preset_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_preset_widget.py make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/./__init__.py Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend.internal". Scanning dependencies of target ost_mol_alg_pymod make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./__init__.py [ 0%] Built target ost_io_pymod make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend.internal". Scanning dependencies of target ost_seq_pymod make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/hsc_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/hsc_widget.py make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/./__init__.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/./views.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./views.py [ 0%] Built target ost_mol_pymod make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend.internal". Scanning dependencies of target ost_seq_alg_pymod cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/./superpose.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./superpose.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/pymod/./__init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./__init__.py [ 0%] Built target ost_seq_pymod make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/immutable_preset_info_handler.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/immutable_preset_info_handler.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/./qsscoring.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./qsscoring.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/pymod/./mat.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./mat.py Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/depend.internal". Scanning dependencies of target subst_ost_startup.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/./trajectory_analysis.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./trajectory_analysis.py make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-VL5z08/openstructure-2.2.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.1 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-VL5z08/openstructure-2.2.0/cmake_support/substitute.cmake cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/init_inspector.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/init_inspector.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/./structure_analysis.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./structure_analysis.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/pymod/./renumber.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./renumber.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 0%] Built target subst_ost_startup.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/./helix_kinks.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./helix_kinks.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/inspector_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/inspector_widget.py [ 0%] Built target ost_seq_alg_pymod make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake --color= make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/depend.internal". Scanning dependencies of target subst_dng cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/map_level_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/map_level_widget.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/./hbond.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./hbond.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/depend.internal". make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-VL5z08/openstructure-2.2.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.1 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-VL5z08/openstructure-2.2.0/cmake_support/substitute.cmake Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/depend.internal". Scanning dependencies of target subst_ost make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-VL5z08/openstructure-2.2.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.1 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-VL5z08/openstructure-2.2.0/cmake_support/substitute.cmake make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/preset.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/remote.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/remote.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_mol_alg_pymod make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake --color= [ 0%] Built target subst_ost cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/preset_editor_list_model.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_editor_list_model.py make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/actions /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/actions /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake --color= [ 0%] Built target subst_dng make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/depend.internal". Scanning dependencies of target subst_ost_config Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/actions/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/depend.internal". Scanning dependencies of target actions make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-VL5z08/openstructure-2.2.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.1 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-VL5z08/openstructure-2.2.0/cmake_support/substitute.cmake make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/preset_editor_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_editor_widget.py Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend.internal". make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/actions/ost-compare-structures /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures Scanning dependencies of target ost_geom_headers make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/export_helper/vector.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/preset_info_handler.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_info_handler.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./def.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./def.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/preset_list_model.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_list_model.py [ 0%] Built target subst_ost_config make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/config /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./exc.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./exc.hh [ 0%] Built target actions make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/preset_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_widget.py Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/depend.internal". Scanning dependencies of target ost_config_headers make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./geom.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./geom.hh make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/depend.internal". Scanning dependencies of target ost_base_headers make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/config/./base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./base.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/export_helper/generic_property_def.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./mat.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/render_mode_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_mode_widget.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./mat2.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat2.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/config/./config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/render_op.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_op.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./mat3.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat3.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/config/./dllexport.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./dllexport.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/export_helper/vec_to_list_conv.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/render_options_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_options_widget.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/config/./version.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./version.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/test_utils/compare_files.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/test_utils/compare_files.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./mat4.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat4.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vec.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/scene_observer_impl.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/scene_observer_impl.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./generic_property.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./generic_property.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/scene_selection_helper.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/scene_selection_helper.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vec2.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec2.hh [ 0%] Built target ost_config_headers make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./integrity_error.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./integrity_error.hh make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./invalid_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./invalid_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/simple_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/simple_widget.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vec3.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec3.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vec4.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec4.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./ptr_observer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./ptr_observer.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend.internal". Scanning dependencies of target ost_base_pymod make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/./settings.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./settings.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/sline_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/sline_widget.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vecmat_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./log.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./log.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/./stutil.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./stutil.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/toolbar_options_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/toolbar_options_widget.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vecmat2_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vecmat3_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/trace_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/trace_widget.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./log_sink.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./log_sink.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/./table.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./table.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./profile.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./profile.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vecmat4_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/./table_selector.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./table_selector.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/tube_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/tube_widget.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./circular_iterator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/uniform_color_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/uniform_color_widget.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./dyn_cast.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./dyn_cast.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/./xmlrunner.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./xmlrunner.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./constants.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./constants.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./stdint.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./stdint.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/visibility_op.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/visibility_op.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/./testutils.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./testutils.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./composite.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/line_trace_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/line_trace_widget.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./stdint_msc.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./stdint_msc.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./composite2.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/wireframe_widget.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/wireframe_widget.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/__init__.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./range.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./range.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./composite3.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/query_editor.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/query_editor.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./composite_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./module_config.hh [ 0%] Built target ost_base_pymod make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./units.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./units.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./composite2_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2_op.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend.internal". Scanning dependencies of target ost_seq_headers make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./composite3_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./message.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./message.hh [ 0%] Built target ost_gui_scene_pymod cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./aligned_cuboid.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./platform.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./platform.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/depend.internal". Scanning dependencies of target ost_info_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vec_mat_predicates.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./string_ref.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./string_ref.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./quat.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./quat.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_iterator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_error.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_error.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./transform.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./transform.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./sequence_list.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_list.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./pod_vector.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./pod_vector.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./fixed_string.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./fixed_string.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./sequence_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./alignment_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./point_cloud.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./point_cloud.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./tri_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./tri_matrix.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_group.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_group.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./sequence_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./boost_filesystem_helper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./aligned_region.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_region.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./aligned_column.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column.hh [ 0%] Built target ost_geom_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_item.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_item.hh [ 0%] Built target ost_base_headers make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./aligned_column_iterator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend.internal". Scanning dependencies of target ost_mol_headers make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/pointer_iterator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend.internal". Scanning dependencies of target ost_bindings_headers make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./invalid_sequence.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/src/./wrap_tmalign.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/atom_group.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./views_from_sequences.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/atom_prop.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./profile_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./profile_handle.hh [ 0%] Built target ost_bindings_headers make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_path.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_path.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend.internal". Scanning dependencies of target ost_seq_alg_headers make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./alignment_opts.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh [ 0%] Built target ost_seq_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_set.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_set.hh make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./clip_alignment.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend.internal". cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./conservation.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_visitor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_visitor.hh Scanning dependencies of target ost_conop_headers make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./conop.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./conop.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_verbose_visitor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./contact_prediction_score.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./processor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./processor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/dihedral.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./item_type.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./contact_weight_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./amino_acids.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./amino_acids.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./geom_info_conversion.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./distance_map.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./diag.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./diag.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./item_type_cast.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type_cast.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./entropy.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./model_check.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./model_check.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh [ 0%] Built target ost_info_headers make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./global_align.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./heuristic.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./heuristic.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/query_ast.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/depend.internal". Scanning dependencies of target ost_db_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./compound.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./ins_del.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./sqlite_wrap.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/query_ast_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./local_align.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./sqlite_conv.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./compound_lib.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/query_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/query_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./linear_indexer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./linear_indexer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./rule_based.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./rule_based.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./semiglobal_align.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./paged_array.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./paged_array.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./sequence_identity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./binary_container.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./binary_container.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./minimal_compound_lib.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./sequence_similarity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./compound_lib_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./extract_data_helper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./subst_weight_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./variance_map.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./ring_finder.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./ring_finder.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh [ 0%] Built target ost_db_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./atom_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh [ 0%] Built target ost_conop_headers make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend.internal". make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake --color= Scanning dependencies of target ost_img_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./atom_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./atom_view.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_view.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/raster_image/raster_image.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./bond_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_handle.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend.internal". cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./hmm_score.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh Scanning dependencies of target ost_img_alg_headers make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./anisotropic.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/dispatch.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./bond_table.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_table.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./auto_correlate.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state.hh [ 0%] Built target ost_seq_alg_headers make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./clear.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clear.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./chain_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./clip_min_max.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./chain_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/depend.internal". Scanning dependencies of target ost_io_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./conjugate.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/chemdict_parser.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./chain_view.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_view.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./convolute.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./convolute.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/star_parser.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/star_parser.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_def.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./chain_type.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_type.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./correlate.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./correlate.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/mmcif_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_factory.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./chem_class.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_class.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./cross_correlate.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./chem_type.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_type.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./density_slice.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/mmcif_info.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./dft.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./dft.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./coord_group.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_group.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./fft.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fft.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/io_profile.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/io_profile.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./coord_source.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_source.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./fftw_helper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/dcd_io.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./in_mem_coord_source.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./fill.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fill.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_visitor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_crd_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_pqr_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./filter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./filter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./coord_frame.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_frame.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_mae_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_algorithm.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./editor_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./fourier_filters.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_mmcif_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./editor_type_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/index.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/index.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/pdb_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./gaussian.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./mol.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./mol.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_pdb_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/type_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./gaussian_laplacian.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/pdb_writer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./highest_peak_search_3d.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/value_holder.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_sdf_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./histogram.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./histogram.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/sdf_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./algorithm.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./algorithm.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./line_iterator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/sdf_writer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./local_sigma_threshold.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_observer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./circle_mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./circle_mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/save_entity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/save_entity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./mask_image.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./composite_mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./composite_mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_observer_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./negate.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./negate.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_property_mapper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/load_entity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_entity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./data_algorithm.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_algorithm.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/surface_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./normalizer_factory.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/load_surface.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_surface.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./norm.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./data_observer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_observer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_view.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_view.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/surface_io_msms_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./data_types.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_types.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./normalizer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_visitor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/pdb_str.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./data.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./norm_linear.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_visitor_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./debug.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./debug.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/stereochemical_params_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./norm_log.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./handle_type_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./dllexport.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./dllexport.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/load_map.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/load_map.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./norm_od.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./ics_editor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./ics_editor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./extent_iterator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_iterator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./power_spectrum.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_df3_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./not_connected_error.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./property_id.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./property_id.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./extent_mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/image_format.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/image_format.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./query.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_dx_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./extent.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./randomize.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./randomize.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./query_error.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_error.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_factory.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_factory.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_spi_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./smooth_mask_image.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_situs_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./query_state.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_state.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./stat.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./residue_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_handle_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./stat_accumulator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_mrc_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./residue_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./residue_prop.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_prop.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_dat_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./stat_min_max.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./residue_view.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_view.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_list.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_list.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_ipl_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./threshold.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./threshold.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_state_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./sec_structure.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./sec_structure.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./transcendentals.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./transform.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_state.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./spatial_organizer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_jpk_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./transform_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./surface.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_nanoscope_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./inverted_mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./inverted_mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./alg_transform.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./alg_mirror.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./map.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./map.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./surface_builder.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_builder.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_png_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./alg_shift.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./builder.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./builder.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./mask_base_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_dm3_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./surface_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./discrete_shrink.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./mask_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./surface_prop.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_prop.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_tiff_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/tiff_util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/tiff_util.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./transformation_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./torsion_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./mask_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/jpk_util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/jpk_util.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./transfer_connectivity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./transformations.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformations.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./mask_visitor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_visitor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/sequence_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./query_view_wrapper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/fasta_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./fractional_shift.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./view_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/pir_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./view_type_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/promod_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./normalizer_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/profile_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./polar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./polar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./view_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./line_average.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_average.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./normalizer_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./xcs_editor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/hhm_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./rscrosscorr.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./null_data.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./null_data.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/pssm_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./bounding_box.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bounding_box.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/clustal_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./observable.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./observable.hh [ 0%] Built target ost_img_alg_headers make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./transform.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./transform.hh make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend.internal". Scanning dependencies of target ost_mol_alg_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./paste_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./paste_impl.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./svd_superpose.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/load.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/load.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./peak.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./peak.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/save.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/save.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./phase.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./phase.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./binary_data_sink.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh [ 0%] Built target ost_mol_headers make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./sec_structure_segments.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./physical_units.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./physical_units.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend.internal". Scanning dependencies of target ost_gfx_headers make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./io_manager.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_manager.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./binary_data_source.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_source.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./pixel_sampling.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./local_dist_diff_test.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./distance_test_common.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./point_list.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./point_list.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./distance_rmsd_test.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./container_serialization.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./container_serialization.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_iso_spec.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./point.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./point.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./superpose_frames.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_octree.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./polygon_mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./polygon_mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./swap_util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./swap_util.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./progress.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./progress.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/octree_isocont.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./filter_clashes.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./construct_cbeta.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./size.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./size.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./io_utils.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_utils.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/cartoon_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./clash_score.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./spherical_mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./spherical_mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./io_exception.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_exception.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/custom_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./trajectory_analysis.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./convert.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./convert.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./util.cc /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./util.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./structure_analysis.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/cpk_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./util.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./consistency_checks.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/debug_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./converting_streams.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./converting_streams.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./value_util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./value_util.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./pdbize.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/simple_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./formatted_line.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./formatted_line.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/sline_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./vecmat.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./vecmat.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./adjacency_bitmap.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/chemdict_parser.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./mask_info_convert.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./consistency_checks.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/line_trace_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./contact_overlap.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/star_parser.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./star_parser.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/mmcif_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./domain_find.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/backbone_trace.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh [ 0%] Built target ost_img_headers make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/mmcif_info.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_info.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend.internal". Scanning dependencies of target ost_gui_headers make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./similarity_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/entity_detail.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/io_profile.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_profile.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./accessibility.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_option_group.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./sec_struct.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/dcd_io.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./dcd_io.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./nonstandard.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_crd_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./molck.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./molck.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/connect_renderer_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./find_membrane.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_pqr_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/selection_tool.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/mapped_property.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./entity_to_density.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_mae_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/measure_tool.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_option.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/pdb_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_reader.hh [ 0%] Built target ost_mol_alg_headers make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/config /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/tabulated_trig.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_pdb_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_manager.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/depend.internal". Scanning dependencies of target ost_config make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/pdb_writer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_writer.hh make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/fast_spheres.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_options_widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh [ 0%] Built target ost_config make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_sdf_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/depend.internal". cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/sdf_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/manipulator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/line_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/custom_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/sdf_writer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_writer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_options_win.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/cpk_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/mouse_event.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh Scanning dependencies of target ost_geom make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/save_entity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./save_entity.hh make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/mat2.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/load_entity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_entity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/simple_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/map_tool.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/surface_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/sline_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/load_surface.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_surface.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/line_trace_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_row.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/surface_io_msms_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/pdb_str.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_str.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/cartoon_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/trace_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/background_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/stereochemical_params_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/sequence_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/conservation_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/by_element_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/by_chain_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/fasta_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/secstr_row.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/uniform_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/pir_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/entity_view_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/promod_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/profile_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/hhm_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/map_handle_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_model.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./render_pass.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_pass.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_row.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/pssm_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./bitmap_io.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/clustal_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/load.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./collada_exporter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/save.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./save.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./color.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./color.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/load_map.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_map.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./entity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_df3_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./entity_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/image_format.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./image_format.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/tick_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_dx_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gl_helper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/title_row.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_spi_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_situs_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_view_object.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_mrc_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_dat_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_node_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/main_thread_runner.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_node_visitor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_ipl_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_object_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_jpk_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/completer_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_object.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_nanoscope_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_png_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_object_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_dm3_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_prim.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/gutter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_tiff_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./symmetry_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/path_completer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/tiff_util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./tiff_util.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_context_parser.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_test_object.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/jpk_util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./jpk_util.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_completer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./glwin_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh [ 0%] Built target ost_io_headers [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/mat3.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./input.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./input.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./prim_list.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./prim_list.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./scene.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_tokenizer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./selection.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./selection.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./surface.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./surface.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./texture.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./texture.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./vertex_array.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./vertex_array_helper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./scene_observer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/shell_history.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/state_machine.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gl_include.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_include.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/state.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./glext_include.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glext_include.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/transition.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./render_mode.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_mode.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./material.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./material.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/button_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gradient.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/drop_box.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gradient_manager.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_manager.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/bottom_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./primitives.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./primitives.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/button_box.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_box.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/event_button.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/event_button.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./povray_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_widget_container.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_bar_widget_holder.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./povray.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./exporter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/side_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/splitter_panel_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./exporter_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gost_exporter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/tabbed_panel_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/context_menu.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./map_iso.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/current_selection_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/custom_part_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./map_slab.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_slab.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/entity_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./map_iso_prop.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/entity_part_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_gfx_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/gfx_scene_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/mat4.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/label_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/root_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/render_mode_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/render_modes_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/messages/message_widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/messages/message_box_widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/messages/log_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/argand.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/draw_overlay.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/drawing_functions.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/fft_panel.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/info_panel.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/img2qt.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/mask_overlay.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/null_overlay.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/strategies.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/strategies_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/viewer_normalizer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./file_browser.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_browser.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./file_type_dialog.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./file_viewer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_viewer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./gl_canvas.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./gl_win.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_win.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./scene_menu.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_menu.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./gosty_app.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gosty_app.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./admin.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./admin.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./main.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./main_area.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_area.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./perspective.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./perspective.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./scene_selection.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_selection.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./main_window.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_window.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./dock_widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./dock_widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./thin_splitter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./widget_geom_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./widget_pool.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_pool.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./widget_registry.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_registry.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./widget_state_saver.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./file_loader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_loader.hh make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_gui_headers [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vec3.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/vec3.cc [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/vecmat2_op.cc [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/vecmat3_op.cc [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/vecmat4_op.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite2.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/composite2.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite3.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/composite3.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/composite2_op.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/composite3_op.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/quat.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/quat.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/transform.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/transform.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/aligned_cuboid.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/point_cloud.cc [ 1%] Linking CXX shared library ../../../stage/lib/libost_geom.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.2 -o ../../../stage/lib/libost_geom.so.2.2.0 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_geom.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2 ../../../stage/lib/libost_geom.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 1%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend.internal". Scanning dependencies of target ost_base make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target _ost_geom make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log.cc.o [ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE 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/build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/generic_property.cc [ 1%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/log_sink.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/log_sink.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vec2.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_vec2.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o 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-I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/string_ref.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/string_ref.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/platform.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/platform.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/message.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/message.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/message.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/test_utils/compare_files.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/boost_filesystem_helper.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_vecmat2_op.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vec3.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_vec3.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_vec2.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Linking CXX shared library ../../../stage/lib/libost_base.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_base.so.2.2 -o ../../../stage/lib/libost_base.so.2.2.0 CMakeFiles/ost_base.dir/generic_property.cc.o CMakeFiles/ost_base.dir/log.cc.o CMakeFiles/ost_base.dir/log_sink.cc.o CMakeFiles/ost_base.dir/profile.cc.o CMakeFiles/ost_base.dir/units.cc.o CMakeFiles/ost_base.dir/string_ref.cc.o CMakeFiles/ost_base.dir/platform.cc.o CMakeFiles/ost_base.dir/message.cc.o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_base.so.2.2 ../../../stage/lib/libost_base.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 2%] Built target ost_base make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/depend.internal". Scanning dependencies of target ost_info make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 2%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/info_impl.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_vecmat2_op.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_vec3.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_vecmat3_op.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vec4.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_vec4.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_vecmat3_op.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/info_handle.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_vec4.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_vecmat4_op.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/wrap_geom.cc [ 2%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_group.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/info_group.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_mat2.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_mat2.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/wrap_geom.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_vecmat4_op.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_mat3.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_mat3.cc [ 2%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_item.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/info_item.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_mat4.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_mat4.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_mat2.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_mat3.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite2.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_composite2.cc [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_path.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/info_path.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_mat4.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_set.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/info_set.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_composite2.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite3.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_composite3.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_composite3.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_visitor.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/info_visitor.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_composite2_op.cc [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/geom_info_conversion.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_composite3_op.cc [ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/info_verbose_visitor.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_composite2_op.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_composite3_op.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_quat.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_quat.cc [ 5%] Linking CXX shared library ../../../stage/lib/libost_info.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.2 -o ../../../stage/lib/libost_info.so.2.2.0 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_info.so.2.2 ../../../stage/lib/libost_info.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 5%] Built target ost_info make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/depend.internal". Scanning dependencies of target ost_mol make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 5%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/atom_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/atom_base.cc [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_transform.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_transform.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_quat.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/atom_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/atom_handle.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/export_transform.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/atom_view.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/atom_view.cc [ 5%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/bond_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/bond_handle.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/chain_base.cc [ 6%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/geom/_ost_geom.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/geom/_ost_geom.so CMakeFiles/_ost_geom.dir/export_vec2.cc.o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o CMakeFiles/_ost_geom.dir/export_vec3.cc.o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o CMakeFiles/_ost_geom.dir/export_vec4.cc.o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o CMakeFiles/_ost_geom.dir/export_mat2.cc.o CMakeFiles/_ost_geom.dir/export_mat3.cc.o CMakeFiles/_ost_geom.dir/export_mat4.cc.o CMakeFiles/_ost_geom.dir/export_composite2.cc.o CMakeFiles/_ost_geom.dir/export_composite3.cc.o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o CMakeFiles/_ost_geom.dir/export_quat.cc.o CMakeFiles/_ost_geom.dir/export_transform.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/geom/./__init__.pyc\",\"__init__.py\",doraise=True)" [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/chain_handle.cc make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 6%] Built target _ost_geom make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/depend.internal". Scanning dependencies of target ost_img make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/circle_mask.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/circle_mask.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_view.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/chain_view.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_type.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/chain_type.cc [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/composite_mask.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/composite_mask.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/chain_view.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/coord_frame.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/coord_frame.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/coord_group.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/coord_group.cc [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/data_algorithm.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/data_algorithm.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/data_observer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/data_observer.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/data.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/data.cc [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/editor_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/editor_base.cc [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/entity_base.cc [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/entity_handle.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/extent_iterator.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/extent_iterator.cc [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_observer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/entity_observer.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/entity_property_mapper.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_view.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/entity_view.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/extent_mask.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/extent_mask.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/entity_view.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_visitor.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/entity_visitor.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/ics_editor.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/ics_editor.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/extent.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/extent.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/not_connected_error.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/not_connected_error.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_factory.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_factory.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/property_id.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/property_id.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_handle.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/query.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_impl.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_list.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_list.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query_error.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/query_error.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query_state.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/query_state.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/inverted_mask.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/inverted_mask.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/residue_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/residue_base.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/map.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/map.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/mask_base.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/residue_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/residue_handle.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/mask_op.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/mask.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/observable.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/observable.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/paste_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/paste_impl.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/residue_view.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/residue_view.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/surface_builder.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/surface_builder.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/residue_view.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/peak.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/peak.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/phase.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/phase.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/physical_units.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/physical_units.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/pixel_sampling.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/pixel_sampling.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/point_list.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/point_list.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/point.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/point.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/surface_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/surface_handle.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/transfer_connectivity.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/polygon_mask.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/polygon_mask.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/progress.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/progress.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/size.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/size.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/torsion_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/torsion_handle.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/spherical_mask.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/spherical_mask.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask_info_convert.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/mask_info_convert.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/query_view_wrapper.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/view_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/view_op.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_factory.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/coord_source.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/coord_source.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_state/index.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/index.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/in_mem_coord_source.cc [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/bounding_box.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/bounding_box.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/raster_image/raster_image.cc [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/xcs_editor.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/xcs_editor.cc [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl.cc [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.cc [ 15%] Linking CXX shared library ../../../../stage/lib/libost_img.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_img.so.2.2 -o ../../../../stage/lib/libost_img.so.2.2.0 CMakeFiles/ost_img.dir/circle_mask.cc.o CMakeFiles/ost_img.dir/composite_mask.cc.o CMakeFiles/ost_img.dir/data_algorithm.cc.o CMakeFiles/ost_img.dir/data_observer.cc.o CMakeFiles/ost_img.dir/data.cc.o CMakeFiles/ost_img.dir/extent_iterator.cc.o CMakeFiles/ost_img.dir/extent_mask.cc.o CMakeFiles/ost_img.dir/extent.cc.o CMakeFiles/ost_img.dir/image_factory.cc.o CMakeFiles/ost_img.dir/image_handle.cc.o CMakeFiles/ost_img.dir/image_impl.cc.o CMakeFiles/ost_img.dir/image_list.cc.o CMakeFiles/ost_img.dir/inverted_mask.cc.o CMakeFiles/ost_img.dir/map.cc.o CMakeFiles/ost_img.dir/mask_base.cc.o CMakeFiles/ost_img.dir/mask_op.cc.o CMakeFiles/ost_img.dir/mask.cc.o CMakeFiles/ost_img.dir/observable.cc.o CMakeFiles/ost_img.dir/paste_impl.cc.o CMakeFiles/ost_img.dir/peak.cc.o CMakeFiles/ost_img.dir/phase.cc.o CMakeFiles/ost_img.dir/physical_units.cc.o CMakeFiles/ost_img.dir/pixel_sampling.cc.o CMakeFiles/ost_img.dir/point_list.cc.o CMakeFiles/ost_img.dir/point.cc.o CMakeFiles/ost_img.dir/polygon_mask.cc.o CMakeFiles/ost_img.dir/progress.cc.o CMakeFiles/ost_img.dir/size.cc.o CMakeFiles/ost_img.dir/spherical_mask.cc.o CMakeFiles/ost_img.dir/mask_info_convert.cc.o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o CMakeFiles/ost_img.dir/image_state/index.cc.o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2 ../../../../stage/lib/libost_img.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 15%] Built target ost_img make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/depend.internal". Scanning dependencies of target _ost_base make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/log_sink.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/log.hh:25, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/wrap_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/wrap_base.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/log_sink.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/log.hh:25, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/wrap_base.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/dihedral.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/query_ast.cc [ 15%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/export_logger.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/export_logger.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/export_logger.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/query_impl.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl.cc [ 15%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/export_range.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/export_range.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/log_sink.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/log.hh:25, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/export_range.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/export_units.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/export_units.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/export_units.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend.internal". Scanning dependencies of target ost_img_alg make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/anisotropic.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/atom_prop.cc [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/auto_correlate.cc [ 16%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/_ost_base.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_base.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/_ost_base.so CMakeFiles/_ost_base.dir/wrap_base.cc.o CMakeFiles/_ost_base.dir/export_logger.cc.o CMakeFiles/_ost_base.dir/export_range.cc.o CMakeFiles/_ost_base.dir/export_units.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_base.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/settings.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./settings.pyc\",\"settings.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/stutil.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./stutil.pyc\",\"stutil.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/table.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./table.pyc\",\"table.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/table_selector.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./table_selector.pyc\",\"table_selector.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/xmlrunner.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./xmlrunner.pyc\",\"xmlrunner.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod/testutils.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./testutils.pyc\",\"testutils.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 16%] Built target _ost_base make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/depend.internal". Scanning dependencies of target _ost_info make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 17%] Building CXX object modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_info_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_info.dir/wrap_info.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/pymod/wrap_info.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/convolute.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/convolute.cc [ 17%] Linking CXX shared library ../../../../stage/lib/libost_mol.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_mol.so.2.2 -o ../../../../stage/lib/libost_mol.so.2.2.0 CMakeFiles/ost_mol.dir/atom_base.cc.o CMakeFiles/ost_mol.dir/atom_handle.cc.o CMakeFiles/ost_mol.dir/atom_view.cc.o CMakeFiles/ost_mol.dir/bond_handle.cc.o CMakeFiles/ost_mol.dir/chain_base.cc.o CMakeFiles/ost_mol.dir/chain_handle.cc.o CMakeFiles/ost_mol.dir/chain_view.cc.o CMakeFiles/ost_mol.dir/chain_type.cc.o CMakeFiles/ost_mol.dir/coord_frame.cc.o CMakeFiles/ost_mol.dir/coord_group.cc.o CMakeFiles/ost_mol.dir/editor_base.cc.o CMakeFiles/ost_mol.dir/entity_base.cc.o CMakeFiles/ost_mol.dir/entity_handle.cc.o CMakeFiles/ost_mol.dir/entity_observer.cc.o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o CMakeFiles/ost_mol.dir/entity_view.cc.o CMakeFiles/ost_mol.dir/entity_visitor.cc.o CMakeFiles/ost_mol.dir/ics_editor.cc.o CMakeFiles/ost_mol.dir/not_connected_error.cc.o CMakeFiles/ost_mol.dir/property_id.cc.o CMakeFiles/ost_mol.dir/query.cc.o CMakeFiles/ost_mol.dir/query_error.cc.o CMakeFiles/ost_mol.dir/query_state.cc.o CMakeFiles/ost_mol.dir/residue_base.cc.o CMakeFiles/ost_mol.dir/residue_handle.cc.o CMakeFiles/ost_mol.dir/residue_view.cc.o CMakeFiles/ost_mol.dir/surface_builder.cc.o CMakeFiles/ost_mol.dir/surface_handle.cc.o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o CMakeFiles/ost_mol.dir/torsion_handle.cc.o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o CMakeFiles/ost_mol.dir/view_op.cc.o CMakeFiles/ost_mol.dir/coord_source.cc.o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o CMakeFiles/ost_mol.dir/bounding_box.cc.o CMakeFiles/ost_mol.dir/xcs_editor.cc.o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/correlate.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/correlate.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2 ../../../../stage/lib/libost_mol.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 17%] Built target ost_mol make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/depend.internal". Scanning dependencies of target ost_seq make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 17%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/pymod/wrap_info.cc:27: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/cross_correlate.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/density_slice.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/density_slice.cc [ 17%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/dft.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/dft.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/fft.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/fft.cc [ 17%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/sequence_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/sequence_handle.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/fourier_filters.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/gaussian.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/gaussian.cc [ 19%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/aligned_region.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/aligned_region.cc [ 19%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/aligned_column.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/aligned_column.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/gaussian_gradient_magnitude.cc [ 19%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/sequence_list.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/sequence_list.cc [ 19%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/alignment_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/alignment_handle.cc [ 19%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/sequence_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/sequence_op.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/gaussian_laplacian.cc [ 19%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/info/_ost_info.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/info/_ost_info.so CMakeFiles/_ost_info.dir/wrap_info.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/sequence_op.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/views_from_sequences.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/info/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/info/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 19%] Built target _ost_info make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend.internal". Scanning dependencies of target _ost_mol make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 19%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_atom.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_atom.cc [ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/profile_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/profile_handle.cc [ 20%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_atom_view.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/highest_peak_search_3d.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_atom.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Linking CXX shared library ../../../../stage/lib/libost_seq.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_seq.so.2.2 -o ../../../../stage/lib/libost_seq.so.2.2.0 CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o CMakeFiles/ost_seq.dir/sequence_handle.cc.o CMakeFiles/ost_seq.dir/aligned_region.cc.o CMakeFiles/ost_seq.dir/aligned_column.cc.o CMakeFiles/ost_seq.dir/sequence_list.cc.o CMakeFiles/ost_seq.dir/alignment_handle.cc.o CMakeFiles/ost_seq.dir/sequence_op.cc.o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o CMakeFiles/ost_seq.dir/profile_handle.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2 ../../../../stage/lib/libost_seq.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 20%] Built target ost_seq [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/histogram.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/histogram.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_atom_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend.internal". Scanning dependencies of target _ost_img make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 20%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_data.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_data.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/line_iterator.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/local_sigma_threshold.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_data.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/mask_image.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/mask_image.cc [ 20%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_bond.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_bond.cc [ 21%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_data_algorithm.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/normalizer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/normalizer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_bond.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_chain.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_chain.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_data_algorithm.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/normalizer_factory.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_chain.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/norm_linear.cc [ 23%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_extent.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_extent.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/norm_log.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/norm_log.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_extent.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/norm_od.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/norm_od.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/power_spectrum.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/randomize.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/randomize.cc [ 23%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_image_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_image_handle.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/smooth_mask_image.cc [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/stat.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/stat.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_image_handle.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_peak.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_peak.cc [ 24%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_chain_view.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/stat_min_max.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_peak.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_chain_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/alg_transform.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/alg_mirror.cc [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/alg_shift.cc [ 24%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_phase.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_phase.cc [ 25%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/threshold.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/threshold.cc [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_point.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_point.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_phase.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_coord_group.cc [ 25%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/discrete_shrink.cc [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_progress.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_progress.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_point.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_coord_group.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_progress.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/transformation_base.cc [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_raster_image.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_raster_image.cc [ 25%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/transformations.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/transformations.cc [ 25%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_coord_frame.cc [ 25%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/fractional_shift.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_raster_image.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_size.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_size.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_coord_frame.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/polar.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/polar.cc [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_mask.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_mask.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_size.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/rscrosscorr.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_mask.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_editors.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_editors.cc [ 26%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_image_list.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_image_list.cc [ 26%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/line_average.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/line_average.cc [ 26%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_map.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_map.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_editors.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_image_list.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Linking CXX shared library ../../../../stage/lib/libost_img_alg.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_img_alg.so.2.2 -o ../../../../stage/lib/libost_img_alg.so.2.2.0 CMakeFiles/ost_img_alg.dir/anisotropic.cc.o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o CMakeFiles/ost_img_alg.dir/convolute.cc.o CMakeFiles/ost_img_alg.dir/correlate.cc.o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o CMakeFiles/ost_img_alg.dir/density_slice.cc.o CMakeFiles/ost_img_alg.dir/dft.cc.o CMakeFiles/ost_img_alg.dir/fft.cc.o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o CMakeFiles/ost_img_alg.dir/gaussian.cc.o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o CMakeFiles/ost_img_alg.dir/histogram.cc.o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o CMakeFiles/ost_img_alg.dir/mask_image.cc.o CMakeFiles/ost_img_alg.dir/normalizer.cc.o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o CMakeFiles/ost_img_alg.dir/norm_log.cc.o CMakeFiles/ost_img_alg.dir/norm_od.cc.o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o CMakeFiles/ost_img_alg.dir/randomize.cc.o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o CMakeFiles/ost_img_alg.dir/stat.cc.o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o CMakeFiles/ost_img_alg.dir/threshold.cc.o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o CMakeFiles/ost_img_alg.dir/transformations.cc.o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o CMakeFiles/ost_img_alg.dir/polar.cc.o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o CMakeFiles/ost_img_alg.dir/line_average.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img_alg.so.2.2 ../../../../stage/lib/libost_img_alg.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 26%] Built target ost_img_alg make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/depend.internal". Scanning dependencies of target ost_bindings make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 26%] Building CXX object modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/c++ -DOST_MODULE_OST_BINDINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_bindings_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/src/wrap_tmalign.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/export_map.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/wrap_img.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/wrap_img.cc [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_entity.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_entity.cc [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_entity_view.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/wrap_img.cc:27: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/img/_ost_img.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.9/dist-packages/ost/img/_ost_img.so CMakeFiles/_ost_img.dir/export_data.cc.o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o CMakeFiles/_ost_img.dir/export_extent.cc.o CMakeFiles/_ost_img.dir/export_image_handle.cc.o CMakeFiles/_ost_img.dir/export_peak.cc.o CMakeFiles/_ost_img.dir/export_phase.cc.o CMakeFiles/_ost_img.dir/export_point.cc.o CMakeFiles/_ost_img.dir/export_progress.cc.o CMakeFiles/_ost_img.dir/export_raster_image.cc.o CMakeFiles/_ost_img.dir/export_size.cc.o CMakeFiles/_ost_img.dir/export_mask.cc.o CMakeFiles/_ost_img.dir/export_image_list.cc.o CMakeFiles/_ost_img.dir/export_map.cc.o CMakeFiles/_ost_img.dir/wrap_img.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_entity.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/img/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 26%] Built target _ost_img make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend.internal". Scanning dependencies of target ost_seq_alg make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/clip_alignment.cc [ 26%] Linking CXX shared library ../../../stage/lib/libost_bindings.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_bindings.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_bindings.so.2.2 -o ../../../stage/lib/libost_bindings.so.2.2.0 CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_entity_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_bindings.so.2.2.0 ../../../stage/lib/libost_bindings.so.2.2 ../../../stage/lib/libost_bindings.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 26%] Built target ost_bindings [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/conservation.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/conservation.cc [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/contact_prediction_score.cc [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/contact_weight_matrix.cc [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/distance_map.cc [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/entropy.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/entropy.cc [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/global_align.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/global_align.cc [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/ins_del.cc [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/local_align.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/local_align.cc [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/merge_pairwise_alignments.cc [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_property_id.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_property_id.cc [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/pair_subst_weight_matrix.cc [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/semiglobal_align.cc [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_query.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_query.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_property_id.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/sequence_identity.cc [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/sequence_similarity.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_query.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_residue.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_residue.cc [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/subst_weight_matrix.cc [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/variance_map.cc [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/hmm_pseudo_counts.cc [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_residue_view.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_residue.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_surface.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_surface.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_residue_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_surface.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/hmm_score.cc [ 30%] Linking CXX shared library ../../../../stage/lib/libost_seq_alg.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_seq_alg.so.2.2 -o ../../../../stage/lib/libost_seq_alg.so.2.2.0 CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o CMakeFiles/ost_seq_alg.dir/conservation.cc.o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o CMakeFiles/ost_seq_alg.dir/entropy.cc.o CMakeFiles/ost_seq_alg.dir/global_align.cc.o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o CMakeFiles/ost_seq_alg.dir/local_align.cc.o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_seq_alg.so.2.2 ../../../../stage/lib/libost_seq_alg.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 30%] Built target ost_seq_alg make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/depend.internal". Scanning dependencies of target ost_db make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 30%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/sqlite_wrap.cc [ 30%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/linear_indexer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/linear_indexer.cc [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_bounding_box.cc [ 32%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/binary_container.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/binary_container.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_bounding_box.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/extract_data_helper.cc /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_query_view_wrapper.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_torsion.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_torsion.cc [ 32%] Linking CXX shared library ../../../stage/lib/libost_db.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_db.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_db.so.2.2 -o ../../../stage/lib/libost_db.so.2.2.0 CMakeFiles/ost_db.dir/sqlite_wrap.cc.o CMakeFiles/ost_db.dir/linear_indexer.cc.o CMakeFiles/ost_db.dir/binary_container.cc.o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_db.so.2.2.0 ../../../stage/lib/libost_db.so.2.2 ../../../stage/lib/libost_db.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 32%] Built target ost_db make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend.internal". Scanning dependencies of target _ost_img_alg make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 32%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod/wrap_alg.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_query_view_wrapper.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_torsion.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod/wrap_alg.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_visitor.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_visitor.cc [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/wrap_mol.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_visitor.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/wrap_mol.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_entity_property_mapper.cc [ 32%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod/export_filter.cc [ 32%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod/export_normalizer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/export_entity_property_mapper.cc:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod/export_filter.cc:27: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod/export_normalizer.cc:27: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/mol/_ost_mol.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.9/dist-packages/ost/mol/_ost_mol.so CMakeFiles/_ost_mol.dir/export_atom.cc.o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o CMakeFiles/_ost_mol.dir/export_bond.cc.o CMakeFiles/_ost_mol.dir/export_chain.cc.o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o CMakeFiles/_ost_mol.dir/export_editors.cc.o CMakeFiles/_ost_mol.dir/export_entity.cc.o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o CMakeFiles/_ost_mol.dir/export_property_id.cc.o CMakeFiles/_ost_mol.dir/export_query.cc.o CMakeFiles/_ost_mol.dir/export_residue.cc.o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o CMakeFiles/_ost_mol.dir/export_surface.cc.o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o CMakeFiles/_ost_mol.dir/export_torsion.cc.o CMakeFiles/_ost_mol.dir/export_visitor.cc.o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 32%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod/export_transcendentals.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 32%] Built target _ost_mol make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend.internal". Scanning dependencies of target _ost_seq make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 32%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq.dir/export_sequence.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/pymod/export_sequence.cc [ 32%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod/export_polar.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod/export_transcendentals.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/pymod/export_profile_handle.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/pymod/export_sequence.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod/export_polar.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:9, from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/pymod/export_profile_handle.cc:24: /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/depend.internal". Scanning dependencies of target ost_conop make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 32%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/processor.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/processor.cc [ 32%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/img/alg/_ost_img_alg.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.9/dist-packages/ost/img/alg/_ost_img_alg.so CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_img_alg.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/img/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 32%] Built target _ost_img_alg [ 32%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/amino_acids.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/amino_acids.cc [ 32%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/conop.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/conop.cc [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/minimal_compound_lib.cc [ 33%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/pymod/wrap_seq.cc [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/compound_lib_base.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/pymod/wrap_seq.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/heuristic.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/heuristic.cc [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/diag.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/diag.cc [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/rule_based.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/rule_based.cc [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/model_check.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/model_check.cc [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/compound.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/compound.cc [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/compound_lib.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/compound_lib.cc [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/ring_finder.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/ring_finder.cc [ 33%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/seq/_ost_seq.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.9/dist-packages/ost/seq/_ost_seq.so CMakeFiles/_ost_seq.dir/export_sequence.cc.o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 33%] Built target _ost_seq make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/depend.internal". Scanning dependencies of target _ost_bindings Scanning dependencies of target _ost_db make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 33%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_db.dir/export_linear_db.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/pymod/export_linear_db.cc [ 33%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/export_tmalign.cc [ 33%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_db.dir/wrap_db.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/pymod/wrap_db.cc [ 33%] Linking CXX shared library ../../../stage/lib/libost_conop.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_conop.so.2.2 -o ../../../stage/lib/libost_conop.so.2.2.0 CMakeFiles/ost_conop.dir/processor.cc.o CMakeFiles/ost_conop.dir/amino_acids.cc.o CMakeFiles/ost_conop.dir/conop.cc.o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o CMakeFiles/ost_conop.dir/heuristic.cc.o CMakeFiles/ost_conop.dir/diag.cc.o CMakeFiles/ost_conop.dir/rule_based.cc.o CMakeFiles/ost_conop.dir/model_check.cc.o CMakeFiles/ost_conop.dir/compound.cc.o CMakeFiles/ost_conop.dir/compound_lib.cc.o CMakeFiles/ost_conop.dir/ring_finder.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2 ../../../stage/lib/libost_conop.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 33%] Built target ost_conop make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend.internal". Scanning dependencies of target _ost_seq_alg make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 33%] Building CXX object modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/pymod/wrap_seq_alg.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/pymod/export_linear_db.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/export_tmalign.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/pymod/wrap_db.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/wrap_bindings.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/pymod/wrap_seq_alg.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/wrap_bindings.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/bindings/_ost_bindings.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_bindings.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/bindings/_ost_bindings.so CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_bindings.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/lga.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./lga.pyc\",\"lga.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/hbplus.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hbplus.pyc\",\"hbplus.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/msms.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./msms.pyc\",\"msms.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/tmtools.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./tmtools.pyc\",\"tmtools.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/dssp.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./dssp.pyc\",\"dssp.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/clustalw.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./clustalw.pyc\",\"clustalw.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/utils.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./utils.pyc\",\"utils.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/naccess.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./naccess.pyc\",\"naccess.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/hhblits.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits.pyc\",\"hhblits.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/hhblits2.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits2.pyc\",\"hhblits2.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/hhblits3.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits3.pyc\",\"hhblits3.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/blast.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./blast.pyc\",\"blast.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/cadscore.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./cadscore.pyc\",\"cadscore.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/kclust.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./kclust.pyc\",\"kclust.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod/ialign.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./ialign.pyc\",\"ialign.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 33%] Built target _ost_bindings make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/depend.internal". Scanning dependencies of target ost_mol_alg make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/svd_superpose.cc Scanning dependencies of target ost_gfx make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/bitmap_io.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/bitmap_io.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/svd_superpose.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/exporter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/exporter.cc [ 34%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/db/_ost_db.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_db.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/db/_ost_db.so CMakeFiles/_ost_db.dir/export_linear_db.cc.o CMakeFiles/_ost_db.dir/wrap_db.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/db/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/db/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 34%] Built target _ost_db make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend.internal". Scanning dependencies of target _ost_conop make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 34%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/wrap_conop.cc [ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/collada_exporter.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/wrap_conop.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_compound.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_compound.cc [ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_compound.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/primitives.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/primitives.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/entity.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/entity.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/clash_score.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/sec_structure_segments.cc [ 35%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/seq/alg/_ost_seq_alg.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.9/dist-packages/ost/seq/alg/_ost_seq_alg.so CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq_alg.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so ../../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/pymod/mat.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./mat.pyc\",\"mat.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/pymod/renumber.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./renumber.pyc\",\"renumber.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 35%] Built target _ost_seq_alg [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/local_dist_diff_test.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/symmetry_node.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/distance_test_common.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/gfx_node.cc [ 37%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_processor.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_processor.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/distance_rmsd_test.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/gfx_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_processor.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_object.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/gfx_object.cc [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/gfx_prim.cc [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/gfx_test_object.cc [ 38%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/superpose_frames.cc [ 38%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_heuristic.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/input.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/input.cc [ 38%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_amino_acids.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/prim_list.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/prim_list.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_heuristic.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_amino_acids.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_conop.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_conop.cc [ 38%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/filter_clashes.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/scene.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/scene.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/scene.cc:33: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_conop.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_diag.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_diag.cc [ 38%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_rule_based.cc [ 38%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/construct_cbeta.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/selection.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/selection.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_diag.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_rule_based.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/trajectory_analysis.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/surface.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/surface.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gradient.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/gradient.cc [ 39%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_ring_finder.cc [ 39%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/structure_analysis.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/gradient_manager.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/vertex_array.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/vertex_array.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/export_ring_finder.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/consistency_checks.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/vertex_array_helper.cc [ 39%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/conop/_ost_conop.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_conop.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/conop/_ost_conop.so CMakeFiles/_ost_conop.dir/wrap_conop.cc.o CMakeFiles/_ost_conop.dir/export_compound.cc.o CMakeFiles/_ost_conop.dir/export_processor.cc.o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o CMakeFiles/_ost_conop.dir/export_conop.cc.o CMakeFiles/_ost_conop.dir/export_diag.cc.o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/conop/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod/cleanup.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/conop/./cleanup.pyc\",\"cleanup.py\",doraise=True)" /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/vertex_array.cc:1311:8: warning: ‘geom::Vec3 ost::gfx::{anonymous}::make_aaline_edge(const geom::Vec2&, const geom::Vec2&, float)’ defined but not used [-Wunused-function] 1311 | Vec3 make_aaline_edge(const Vec2& c1, const Vec2& c0, float s) | ^~~~~~~~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/vertex_array.cc:1239:8: warning: ‘void ost::gfx::{anonymous}::render_aalines(ost::gfx::{anonymous}::AALineList&, float, float)’ defined but not used [-Wunused-function] 1239 | void render_aalines(AALineList& line_list, float w, float r) | ^~~~~~~~~~~~~~ make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 39%] Built target _ost_conop [ 39%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/pdbize.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/material.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/material.cc [ 39%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/adjacency_bitmap.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/povray.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/povray.cc [ 39%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/contact_overlap.cc [ 39%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/domain_find.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/gost_exporter.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/texture.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/texture.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/color_op.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/by_element_color_op.cc [ 39%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/similarity_matrix.cc [ 41%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/accessibility.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/by_chain_color_op.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/uniform_color_op.cc [ 42%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/sec_struct.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_color_op.cc [ 42%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/nonstandard.cc [ 42%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/molck.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/molck.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/entity_view_color_op.cc [ 42%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/find_membrane.cc [ 42%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/entity_to_density.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/basic_gradient_color_op.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_level_color_op.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/entity_detail.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/cartoon_renderer.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/custom_renderer.cc [ 42%] Linking CXX shared library ../../../../stage/lib/libost_mol_alg.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/atom_scattering_properties.txt /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/atom_scattering_properties.txt cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/stereo_chemical_props.txt /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/stereo_chemical_props.txt cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_mol_alg.so.2.2 -o ../../../../stage/lib/libost_mol_alg.so.2.2.0 CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o CMakeFiles/ost_mol_alg.dir/molck.cc.o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libsqlite3.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../../stage/lib/libost_mol_alg.so.2.2 ../../../../stage/lib/libost_mol_alg.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 42%] Built target ost_mol_alg make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/depend.internal". Scanning dependencies of target ost_io make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/io_manager.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/io_manager.cc [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/convert.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/convert.cc /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/convert.cc: In static member function ‘static float ost::io::{anonymous}::ConvertHelper<1, 2, float>::Convert(const float&)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/convert.cc:346:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 346 | reinterpret_cast(&result)[0]=reinterpret_cast(&tmp)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/convert.cc:347:52: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | reinterpret_cast(&result)[1]=reinterpret_cast(&tmp)[0]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/convert.cc: In static member function ‘static void ost::io::{anonymous}::ConvertHelper<1, 2, float>::ConvertIP(float*)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/convert.cc:355:50: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 355 | reinterpret_cast(value)[1]=reinterpret_cast(&tmp)[0]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/convert.cc: In static member function ‘static float ost::io::{anonymous}::ConvertHelper<2, 1, float>::Convert(const float&)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/convert.cc:367:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 367 | reinterpret_cast(&tmp)[0]=reinterpret_cast(&value)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/convert.cc: In static member function ‘static void ost::io::{anonymous}::ConvertHelper<2, 1, float>::ConvertIP(float*)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/convert.cc:375:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 375 | reinterpret_cast(&tmp)[0]=reinterpret_cast(value)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/io_utils.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/io_utils.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/cpk_renderer.cc [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_crd_handler.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/debug_renderer.cc [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_pqr_handler.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/simple_renderer.cc [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_mae_handler.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/sline_renderer.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/line_trace_renderer.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/backbone_trace.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/connect_renderer_base.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer_base.cc [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/pdb_reader.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/mapped_property.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/tabulated_trig.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/fast_spheres.cc [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_pdb_handler.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/pdb_writer.cc [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/render_options.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_sdf_handler.cc [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/line_render_options.cc [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/custom_render_options.cc [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/cpk_render_options.cc [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/simple_render_options.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_mmcif_handler.cc [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/sline_render_options.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/sdf_reader.cc [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/line_trace_render_options.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/sdf_writer.cc [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/cartoon_render_options.cc [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/trace_render_options.cc [ 47%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/map_handle_color_op.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/format/alt_sstream.hpp:22, from /usr/include/boost/format/internals.hpp:24, from /usr/include/boost/format.hpp:38, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/sdf_writer.hh:33, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/sdf_writer.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/save_entity.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/save_entity.cc [ 47%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/map_iso.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/map_iso.cc make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend.internal". Scanning dependencies of target _ost_mol_alg make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 47%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/wrap_mol_alg.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/load_entity.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/load_entity.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/surface_io_msms_handler.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/wrap_mol_alg.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/map_slab.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/map_slab.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/load_surface.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/load_surface.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/chemdict_parser.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/io_profile.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/io_profile.cc [ 48%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/dcd_io.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/star_parser.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/star_parser.cc [ 48%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.cc [ 48%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_o.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/mmcif_reader.cc [ 48%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_octree.cc [ 48%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/octree_isocont.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/mmcif_info.cc [ 48%] Linking CXX shared library ../../../stage/lib/libost_gfx.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/test_texture.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/textures/test_texture.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/glyph_texture.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/textures/glyph_texture.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_gfx.so.2.2 -o ../../../stage/lib/libost_gfx.so.2.2.0 CMakeFiles/ost_gfx.dir/bitmap_io.cc.o CMakeFiles/ost_gfx.dir/exporter.cc.o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o CMakeFiles/ost_gfx.dir/color.cc.o CMakeFiles/ost_gfx.dir/primitives.cc.o CMakeFiles/ost_gfx.dir/entity.cc.o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o CMakeFiles/ost_gfx.dir/gfx_node.cc.o CMakeFiles/ost_gfx.dir/gfx_object.cc.o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o CMakeFiles/ost_gfx.dir/input.cc.o CMakeFiles/ost_gfx.dir/prim_list.cc.o CMakeFiles/ost_gfx.dir/scene.cc.o CMakeFiles/ost_gfx.dir/selection.cc.o CMakeFiles/ost_gfx.dir/surface.cc.o CMakeFiles/ost_gfx.dir/gradient.cc.o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o CMakeFiles/ost_gfx.dir/vertex_array.cc.o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o CMakeFiles/ost_gfx.dir/material.cc.o CMakeFiles/ost_gfx.dir/povray.cc.o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o CMakeFiles/ost_gfx.dir/texture.cc.o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o CMakeFiles/ost_gfx.dir/map_iso.cc.o CMakeFiles/ost_gfx.dir/map_slab.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_db.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gfx.so.2.2.0 ../../../stage/lib/libost_gfx.so.2.2 ../../../stage/lib/libost_gfx.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 48%] Built target ost_gfx make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend.internal". Scanning dependencies of target _ost_gfx make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 48%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/wrap_gfx.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/pdb_str.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/wrap_gfx.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_svd_superpose.cc [ 48%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_scene.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_scene.cc [ 50%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_clash.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/stereochemical_params_reader.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_svd_superpose.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_scene.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_clash.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/clustal_io_handler.cc /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_trajectory_analysis.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/load.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/load.cc [ 50%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_structure_analysis.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_trajectory_analysis.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/save.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/save.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_structure_analysis.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_gfx_node.cc [ 51%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_symmetry_node.cc [ 51%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/fasta_io_handler.cc [ 51%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_contact_overlap.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_gfx_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_symmetry_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_contact_overlap.cc:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/pir_io_handler.cc [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_gfx_obj.cc [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_entity.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_entity.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_gfx_obj.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/promod_io_handler.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_entity.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/hhm_io_handler.cc [ 52%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_accessibility.cc [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_surface.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_surface.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_accessibility.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_surface.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/pssm_io_handler.cc [ 52%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_sec_structure.cc [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_primitives.cc [ 52%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/load_map.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/load_map.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_sec_structure.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_primlist.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_primitives.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_dx_handler.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_primlist.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_scene_observer.cc [ 52%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_non_standard.cc [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_render_options.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_render_options.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_scene_observer.cc:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_color.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_color.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_non_standard.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_render_options.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_molck.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_color.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_spi_handler.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_molck.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_gradient.cc [ 53%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_color_ops.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_gradient.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_situs_handler.cc [ 53%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_membrane.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_color_ops.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_membrane.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_glwin_base.cc [ 53%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_mrc_handler.cc [ 53%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_entity_to_density.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_glwin_base.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/export_entity_to_density.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_exporter.cc [ 55%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/mol/alg/_ost_mol_alg.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.9/dist-packages/ost/mol/alg/_ost_mol_alg.so CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol_alg.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libsqlite3.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/views.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./views.pyc\",\"views.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/superpose.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./superpose.pyc\",\"superpose.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/qsscoring.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./qsscoring.pyc\",\"qsscoring.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/trajectory_analysis.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./trajectory_analysis.pyc\",\"trajectory_analysis.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/structure_analysis.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./structure_analysis.pyc\",\"structure_analysis.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/helix_kinks.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./helix_kinks.pyc\",\"helix_kinks.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod/hbond.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./hbond.pyc\",\"hbond.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 55%] Built target _ost_mol_alg [ 55%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_bitmap.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_exporter.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_map.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_map.cc [ 55%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_dm3_handler.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_bitmap.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/export_map.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_tiff_handler.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_tiff_handler.cc:32: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_dat_handler.cc [ 56%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_ipl_handler.cc [ 56%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/gfx/_ost_gfx.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/gradients.xml /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/scene/gradients.xml cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gfx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/gfx/_ost_gfx.so CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o CMakeFiles/_ost_gfx.dir/export_scene.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o CMakeFiles/_ost_gfx.dir/export_entity.cc.o CMakeFiles/_ost_gfx.dir/export_surface.cc.o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o CMakeFiles/_ost_gfx.dir/export_color.cc.o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o CMakeFiles/_ost_gfx.dir/export_map.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_gfx.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 56%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_jpk_handler.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gfx/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod/py_gfx_obj.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gfx/./py_gfx_obj.pyc\",\"py_gfx_obj.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 56%] Built target _ost_gfx [ 56%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_nanoscope_handler.cc [ 56%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_png_handler.cc [ 56%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_df3_handler.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh:32, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/alg_transform.hh:24, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/transform.hh:24, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_jpk_handler.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/image_format.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/image_format.cc [ 56%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/tiff_util.cc [ 56%] Linking CXX shared library ../../../stage/lib/libost_io.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_io.so.2.2 -o ../../../stage/lib/libost_io.so.2.2.0 CMakeFiles/ost_io.dir/io_manager.cc.o CMakeFiles/ost_io.dir/convert.cc.o CMakeFiles/ost_io.dir/io_utils.cc.o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o CMakeFiles/ost_io.dir/mol/save_entity.cc.o CMakeFiles/ost_io.dir/mol/load_entity.cc.o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o CMakeFiles/ost_io.dir/mol/load_surface.cc.o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o CMakeFiles/ost_io.dir/mol/io_profile.cc.o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o CMakeFiles/ost_io.dir/mol/star_parser.cc.o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o CMakeFiles/ost_io.dir/seq/load.cc.o CMakeFiles/ost_io.dir/seq/save.cc.o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o CMakeFiles/ost_io.dir/img/load_map.cc.o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o CMakeFiles/ost_io.dir/img/image_format.cc.o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.2.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_io.so.2.2.0 ../../../stage/lib/libost_io.so.2.2 ../../../stage/lib/libost_io.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 56%] Built target ost_io make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/depend make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/DependInfo.cmake --color= make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend make -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/depend.internal". [ 57%] Generating data_viewer/moc_pointlist_overlay_base.cpp Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/depend.internal". cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp_parameters Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend.internal". Scanning dependencies of target chemdict_tool Scanning dependencies of target test_mae_standalone make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target _ost_io make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 57%] Building CXX object modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/chemdict_tool.cc [ 57%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o [ 57%] Building CXX object modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_mae_standalone.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_io.dir/wrap_io.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/wrap_io.cc [ 57%] Generating moc_file_browser.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_file_browser.cpp_parameters [ 57%] Generating moc_file_type_dialog.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp_parameters [ 57%] Generating moc_file_viewer.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_file_viewer.cpp_parameters [ 57%] Generating moc_gl_canvas.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp_parameters [ 58%] Generating moc_gl_win.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_win.cpp_parameters [ 58%] Generating moc_scene_menu.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_menu.cpp_parameters [ 58%] Generating moc_gosty_app.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty_app.cpp_parameters [ 58%] Generating moc_main.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main.cpp_parameters [ 58%] Generating moc_main_area.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main_area.cpp_parameters [ 58%] Generating moc_perspective.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_perspective.cpp_parameters [ 58%] Generating moc_dock_widget.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp_parameters [ 58%] Generating moc_main_window.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp_parameters [ 58%] Generating moc_scene_selection.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_selection.cpp_parameters [ 58%] Generating moc_widget.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_widget.cpp_parameters [ 60%] Generating moc_widget_geom_handler.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp_parameters [ 60%] Generating moc_widget_pool.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_pool.cpp_parameters [ 60%] Generating messages/moc_message_widget.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp_parameters [ 60%] Generating messages/moc_message_box_widget.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp_parameters [ 60%] Generating messages/moc_log_reader.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp_parameters [ 60%] Generating sequence_viewer/moc_align_properties_painter.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp_parameters [ 60%] Generating sequence_viewer/moc_background_painter.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp_parameters [ 60%] Generating sequence_viewer/moc_base_row.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp_parameters [ 60%] Generating sequence_viewer/moc_conservation_painter.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp_parameters [ 60%] Generating sequence_viewer/moc_painter.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp_parameters [ 60%] Linking CXX executable ../../../stage/bin/test_mae_standalone cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mae_standalone.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -o ../../../stage/bin/test_mae_standalone -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 60%] Generating sequence_viewer/moc_secstr_row.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp_parameters make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 60%] Built target test_mae_standalone make -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/depend.internal". Scanning dependencies of target lddt make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 60%] Building CXX object modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/lddt.dir/lddt.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/lddt.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/wrap_io.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Generating sequence_viewer/moc_seq_secstr_painter.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp_parameters [ 61%] Generating sequence_viewer/moc_seq_selection_painter.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp_parameters [ 61%] Generating sequence_viewer/moc_seq_text_painter.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp_parameters [ 61%] Generating sequence_viewer/moc_sequence_delegate.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp_parameters [ 61%] Generating sequence_viewer/moc_sequence_model.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp_parameters [ 61%] Generating sequence_viewer/moc_sequence_row.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp_parameters [ 61%] Generating sequence_viewer/moc_sequence_search_bar.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp_parameters [ 61%] Generating sequence_viewer/moc_sequence_table_view.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp_parameters [ 61%] Generating sequence_viewer/moc_sequence_viewer.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp_parameters [ 61%] Generating sequence_viewer/moc_tick_painter.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp_parameters [ 62%] Generating sequence_viewer/moc_title_row.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp_parameters [ 62%] Linking CXX executable ../../../stage/bin/chemdict_tool cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdict_tool.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -o ../../../stage/bin/chemdict_tool -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.2.0 ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 62%] Generating sequence_viewer/moc_alignment_view_object.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp_parameters [ 62%] Generating sequence_viewer/moc_base_view_object.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp_parameters make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 62%] Built target chemdict_tool make -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/tools/molck /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tools/molck /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tools/molck/CMakeFiles/molck.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tools/molck/CMakeFiles/molck.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tools/molck/CMakeFiles/molck.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tools/molck/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tools/molck/CMakeFiles/molck.dir/depend.internal". Scanning dependencies of target molck make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 62%] Building CXX object tools/molck/CMakeFiles/molck.dir/main.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tools/molck && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/molck.dir/main.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/tools/molck/main.cc [ 62%] Generating sequence_viewer/moc_sequence_view_object.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp_parameters [ 62%] Generating python_shell/moc_main_thread_runner.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp_parameters [ 62%] Generating python_shell/moc_completer_base.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp_parameters [ 62%] Generating python_shell/moc_gutter.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp_parameters [ 62%] Generating python_shell/moc_output_redirector.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp_parameters [ 62%] Generating python_shell/moc_path_completer.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp_parameters [ 62%] Generating python_shell/moc_python_completer.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp_parameters [ 64%] Generating python_shell/moc_python_interpreter.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp_parameters [ 64%] Generating python_shell/moc_python_interpreter_worker.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp_parameters [ 64%] Generating python_shell/moc_python_namespace_tree_model.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp_parameters [ 64%] Generating python_shell/moc_python_shell.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp_parameters [ 64%] Generating python_shell/moc_python_shell_widget.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp_parameters [ 64%] Generating python_shell/moc_text_logger.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp_parameters [ 64%] Generating python_shell/moc_state_machine.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp_parameters [ 64%] Generating python_shell/moc_state.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp_parameters [ 64%] Generating python_shell/moc_transition.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp_parameters [ 64%] Generating python_shell/moc_transition_guard.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp_parameters [ 64%] Generating panels/moc_button_bar.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp_parameters [ 65%] Generating panels/moc_drop_box.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp_parameters [ 65%] Generating panels/moc_panel_bar.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp_parameters [ 65%] Generating panels/moc_panel_manager.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp_parameters [ 65%] Generating panels/moc_bottom_bar.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp_parameters [ 65%] Generating panels/moc_button_box.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp_parameters [ 65%] Generating panels/moc_event_button.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp_parameters [ 65%] Generating panels/moc_panel_widget_container.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp_parameters [ 65%] Generating panels/moc_panel_bar_widget_holder.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp_parameters [ 65%] Generating panels/moc_side_bar.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp_parameters [ 65%] Generating panels/moc_splitter_panel_bar.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp_parameters [ 66%] Generating panels/moc_tabbed_panel_bar.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp_parameters [ 66%] Generating scene_win/moc_context_menu.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp_parameters [ 66%] Generating scene_win/moc_current_selection_node.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp_parameters [ 66%] Generating scene_win/moc_custom_part_node.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp_parameters [ 66%] Generating scene_win/moc_gfx_scene_node.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp_parameters [ 66%] Generating scene_win/moc_label_node.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp_parameters [ 66%] Generating scene_win/moc_entity_node.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp_parameters [ 66%] Generating scene_win/moc_entity_part_node.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_part_node.cpp_parameters [ 66%] Generating scene_win/moc_render_mode_node.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp_parameters [ 66%] Generating scene_win/moc_render_modes_node.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp_parameters [ 67%] Generating scene_win/moc_root_node.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp_parameters [ 67%] Generating scene_win/moc_scene_node.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp_parameters [ 67%] Generating scene_win/moc_scene_win.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp_parameters [ 67%] Generating scene_win/moc_scene_win_model.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp_parameters [ 67%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_pdb_io.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/export_pdb_io.cc [ 67%] Generating tools/moc_tool.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool.cpp_parameters [ 67%] Generating tools/moc_tool_option_group.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp_parameters [ 67%] Generating tools/moc_tool_options.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp_parameters [ 67%] Generating tools/moc_tool_bar.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp_parameters [ 67%] Generating tools/moc_tool_option.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp_parameters [ 67%] Generating tools/moc_tool_manager.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp_parameters [ 69%] Generating tools/moc_tool_options_widget.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp_parameters [ 69%] Generating tools/moc_measure_tool.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp_parameters [ 69%] Linking CXX executable ../../../../stage/bin/lddt cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lddt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/lddt.dir/lddt.cc.o -o ../../../../stage/bin/lddt -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_io.so.2.2.0 ../../../../stage/lib/libost_mol_alg.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 69%] Generating tools/moc_tool_options_win.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp_parameters make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 69%] Built target lddt [ 69%] Generating data_viewer/moc_argand.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp_parameters [ 69%] Generating data_viewer/moc_fft_panel.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp_parameters [ 69%] Generating data_viewer/moc_info_panel.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp_parameters [ 69%] Generating data_viewer/moc_data_viewer.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp_parameters [ 69%] Generating data_viewer/moc_overlay_manager_gui.cpp [ 69%] Generating data_viewer/moc_data_viewer_panel_base.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp_parameters cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp_parameters [ 69%] Generating data_viewer/moc_null_overlay.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp_parameters [ 69%] Generating data_viewer/moc_overlay_base.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp_parameters [ 69%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/export_mmcif_io.cc Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/depend.internal". Scanning dependencies of target ost_gui make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_file_browser.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/export_pdb_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/export_mmcif_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Linking CXX executable ../../stage/bin/molck cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tools/molck && /usr/bin/cmake -E cmake_link_script CMakeFiles/molck.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/molck.dir/main.cc.o -o ../../stage/bin/molck -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../stage/lib/libost_io.so.2.2.0 ../../stage/lib/libost_mol_alg.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../stage/lib/libost_seq_alg.so.2.2.0 ../../stage/lib/libost_conop.so.2.2.0 ../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../stage/lib/libost_seq.so.2.2.0 ../../stage/lib/libost_mol.so.2.2.0 ../../stage/lib/libost_img_alg.so.2.2.0 ../../stage/lib/libost_img.so.2.2.0 ../../stage/lib/libost_info.so.2.2.0 ../../stage/lib/libost_base.so.2.2.0 ../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 69%] Built target molck [ 69%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_io.dir/export_map_io.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/export_map_io.cc [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/export_map_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_file_viewer.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_win.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_menu.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty_app.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_main.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main_area.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty_app.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_perspective.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_perspective.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp In file included from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp:10: /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/dock_widget.hh:38:77: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdockwidget.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDockWidget:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/dock_widget.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_selection.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_widget.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_widget.cpp In file included from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp:10: /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main_window.hh:35, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_pool.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem 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-I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB 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/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp [ 73%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/io/_ost_io.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_io.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/io/_ost_io.so CMakeFiles/_ost_io.dir/wrap_io.cc.o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o CMakeFiles/_ost_io.dir/export_map_io.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/remote.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./remote.pyc\",\"remote.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod/repository.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./repository.pyc\",\"repository.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 73%] Built target _ost_io [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/transition.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/transition_guard.hh:24, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp In file included from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/../../../../../modules/gui/src/data_viewer/data_viewer.hh:37, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp:10: /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:35, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/../../../../../modules/gui/src/data_viewer/data_viewer.hh:37, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/thin_splitter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/thin_splitter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/thin_splitter.cc [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/perspective.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/perspective.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/perspective.cc [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget_registry.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/widget_registry.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/file_browser.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_browser.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_type_dialog.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/file_viewer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_viewer.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/main.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_canvas.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/gl_canvas.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gl_canvas.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_browser.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_browser.cc: In constructor ‘ost::gui::FileBrowser::FileBrowser(QWidget*)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_browser.cc:64:13: warning: ‘QDirModel::QDirModel(QObject*)’ is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 64 | model_(new QDirModel), | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_browser.cc:55: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_browser.cc: In constructor ‘ost::gui::FileBrowser::FileBrowser(const QString&, QWidget*)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_browser.cc:104:13: warning: ‘QDirModel::QDirModel(QObject*)’ is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 104 | model_(new QDirModel), | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_browser.cc:55: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/dock_widget.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/dock_widget.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/main_window.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.cc In file included from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/dock_widget.cc:25: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/dock_widget.hh:38:77: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdockwidget.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDockWidget:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/dock_widget.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/dock_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/smart_ptr/weak_ptr.hpp:17, from /usr/include/boost/smart_ptr/enable_shared_from_this.hpp:16, from /usr/include/boost/enable_shared_from_this.hpp:16, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gl_canvas.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gl_canvas.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main.cc: In static member function ‘static QSize ost::gui::GostyMainWindow::GetDefaultSize()’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main.cc:59:65: warning: ‘const QRect QDesktopWidget::availableGeometry(int) const’ is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 59 | QRect desktop_geom=QApplication::desktop()->availableGeometry(); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main.cc:35: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/gl_win.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gl_win.cc /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gl_canvas.cc: In member function ‘virtual void ost::gui::GLCanvas::wheelEvent(QWheelEvent*)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gl_canvas.cc:488:51: warning: ‘int QWheelEvent::delta() const’ is deprecated: Use angleDelta() [-Wdeprecated-declarations] 488 | 0.2*static_cast(-event->delta())); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QMouseEvent:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:25, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gl_canvas.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gl_canvas.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ In file included from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.cc:25: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.hh:35, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.cc:26: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/dock_widget.hh:38:77: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.hh:35, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.cc: In member function ‘void ost::gui::MainWindow::AddDockWidget(QWidget*, const QString&, bool, int)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.cc:60:47: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 60 | DockWidget* dock = new DockWidget(name, this); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.hh:35, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.cc:71:52: warning: ‘QVariant qVariantFromValue(const T&) [with T = QDockWidget*]’ is deprecated: Use QVariant::fromValue() instead. [-Wdeprecated-declarations] 71 | act->setData(qVariantFromValue((QDockWidget*)dock)); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qaction.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmenu.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMenu:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.hh:36, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_window.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qvariant.h:530:17: note: declared here 530 | inline QVariant qVariantFromValue(const T &t) | ^~~~~~~~~~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_menu.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_menu.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_menu.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/widget.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/admin.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/admin.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/admin.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget_pool.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/widget_pool.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gl_win.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_widget.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/message_widget.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/messages/message_widget.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_menu.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/messages/message_box_widget.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/messages/log_reader.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/messages/message_widget.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/messages/message_box_widget.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/align_properties_painter.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_row.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/background_painter.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/conservation_painter.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/secstr_row.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_secstr_painter.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_selection_painter.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_text_painter.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_delegate.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_model.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_row.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_search_bar.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/title_row.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/tick_painter.cc /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.cc: In member function ‘virtual int ost::gui::SequenceTableView::sizeHintForColumn(int) const’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.cc:480:39: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 480 | return this->fontMetrics().width('W'); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/qpainter.h:59, from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPainter:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/painter.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_row.hh:27, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_view_object.hh:27, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_model.hh:35, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_delegate.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/alignment_view_object.cc /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc: In member function ‘void ost::gui::SequenceViewer::MouseWheelEvent(QWheelEvent*)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:298:28: warning: ‘int QWheelEvent::delta() const’ is deprecated: Use angleDelta() [-Wdeprecated-declarations] 298 | int delta = event->delta(); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QWheelEvent:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh:32, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:42: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:299:26: warning: ‘Qt::Orientation QWheelEvent::orientation() const’ is deprecated: Use angleDelta() [-Wdeprecated-declarations] 299 | if (event->orientation() == Qt::Vertical) { | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QWheelEvent:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh:32, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:42: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:222:28: note: declared here 222 | inline Qt::Orientation orientation() const { return qt4O; } | ^~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_view_object.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_view_object.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/gosty_app.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gosty_app.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/main_area.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/main_area.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gosty_app.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/widget_state_saver.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_selection.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_selection.cc In file included from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gosty_app.cc:33: /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gosty_app.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/widget_geom_handler.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/file_loader.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_loader.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/button_bar.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_selection.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/drop_box.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_bar.cc In file included from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_selection.cc:35: /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_selection.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_loader.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_bar.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/bottom_bar.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/button_box.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/button_box.cc In file included from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_loader.cc:52: /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/file_loader.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/event_button.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/event_button.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_manager.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_widget_container.cc /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/event_button.cc: In member function ‘virtual void ost::gui::EventButton::mouseMoveEvent(QMouseEvent*)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/event_button.cc:50:30: warning: ‘Qt::DropAction QDrag::start(Qt::DropActions)’ is deprecated: Use QDrag::exec() instead [-Wdeprecated-declarations] 50 | drag->start(Qt::MoveAction); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QDrag:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/event_button.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtGui/qdrag.h:79:20: note: declared here 79 | Qt::DropAction start(Qt::DropActions supportedActions = Qt::CopyAction); | ^~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_bar_widget_holder.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/side_bar.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/splitter_panel_bar.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/tabbed_panel_bar.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_option_group.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_bar_widget_holder.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_options.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_option.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_manager.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/tabbed_panel_bar.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_options_win.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/mouse_event.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/manipulator.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_options_widget.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_bar.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_options_win.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/selection_tool.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/manipulator.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/measure_tool.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_bar.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/gutter.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/main_thread_runner.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc: In member function ‘void ost::gui::OutputRedirector::Write(const String&)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:42:23: warning: ‘int QTime::elapsed() const’ is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 42 | if(timer_.elapsed()>1000){ | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:237:54: note: declared here 237 | QT_DEPRECATED_X("Use QElapsedTimer instead") int elapsed() const; | ^~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:46:22: warning: ‘int QTime::restart()’ is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 46 | timer_.restart(); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:236:54: note: declared here 236 | QT_DEPRECATED_X("Use QElapsedTimer instead") int restart(); | ^~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:52:18: warning: ‘void QTime::start()’ is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 52 | timer_.start(); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:235:55: note: declared here 235 | QT_DEPRECATED_X("Use QElapsedTimer instead") void start(); | ^~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/completer_base.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/gutter.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/main_thread_runner.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.cc: In constructor ‘ost::gui::OstDirModel::OstDirModel(QObject*)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.cc:31:18: warning: ‘QDirModel::QDirModel(QObject*)’ is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 31 | QDirModel(parent) | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.cc:23: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/path_completer.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_context_parser.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_completer.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_item.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_item.hh:25, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_item.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc: In member function ‘virtual Qt::ItemFlags ost::gui::PythonNamespaceTreeModel::flags(const QModelIndex&) const’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc:110:12: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::ItemFlag; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 110 | return 0; | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_text_document_layout.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_tokenizer.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_syntax_highlighter.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/shell_history.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/string_literal_positions.cc /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc: In constructor ‘ost::gui::PythonShellWidget::PythonShellWidget(QWidget*)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:79:38: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 79 | setTabStopWidth(2*metrics.width(" ")); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qabstractscrollarea.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtextedit.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:34, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:79:39: warning: ‘void QPlainTextEdit::setTabStopWidth(int)’ is deprecated [-Wdeprecated-declarations] 79 | setTabStopWidth(2*metrics.width(" ")); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:34, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:179:24: note: declared here 179 | QT_DEPRECATED void setTabStopWidth(int width); | ^~~~~~~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc: In member function ‘void ost::gui::PythonShellWidget::SetTabWidth(int)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:537:47: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 537 | setTabStopWidth(tab_width_*metrics.width(" ")); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qabstractscrollarea.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtextedit.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:34, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:537:48: warning: ‘void QPlainTextEdit::setTabStopWidth(int)’ is deprecated [-Wdeprecated-declarations] 537 | setTabStopWidth(tab_width_*metrics.width(" ")); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:34, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:179:24: note: declared here 179 | QT_DEPRECATED void setTabStopWidth(int width); | ^~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/state_machine.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/state.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/state.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/transition.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/transition.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/transition.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/state.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.hh:24, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/transition.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/context_menu.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/current_selection_node.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/custom_part_node.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_node.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/current_selection_node.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/label_node.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/entity_node.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/entity_part_node.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/gfx_scene_node.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/render_mode_node.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/entity_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/render_modes_node.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/root_node.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/render_modes_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/map_tool.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.cc: In member function ‘virtual QMimeData* ost::gui::SceneWinModel::mimeData(const QModelIndexList&) const’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.cc:231:31: warning: ‘QByteArray& QByteArray::append(const QString&)’ is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 231 | encoded_data.append(text); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qobject.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QObject:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:24, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.hh:34, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.cc:23: /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1507:20: note: declared here 1507 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc: In member function ‘void ost::gui::SceneWin::RowsInserted(const QModelIndex&, int, int)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc:117:39: warning: ‘QModelIndex QModelIndex::child(int, int) const’ is deprecated: Use QAbstractItemModel::index [-Wdeprecated-declarations] 117 | model->select(parent.child(start,0),QItemSelectionModel::ClearAndSelect|QItemSelectionModel::Rows); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QModelIndex:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh:34, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here 455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const | ^~~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/argand.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/map_slab.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/map_tool.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/draw_overlay.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/drawing_functions.cc In file included from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:37: /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/dock_widget.hh:38:77: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.hh:37, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:41: /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc: In constructor ‘ost::img::gui::DataViewer::DataViewer(QWidget*, const ost::img::ImageHandle&, const QString&)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:75:14: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 75 | lastmouse_() | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc: In member function ‘void ost::img::gui::DataViewer::build(const ost::img::ImageHandle&)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:315:55: warning: ‘const QRect QDesktopWidget::availableGeometry(int) const’ is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 315 | resize(QApplication::desktop()->availableGeometry().adjusted(20,20,-20,-20).size()); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:53: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘virtual void ost::img::gui::DataViewerPanelBase::paintEvent(QPaintEvent*)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:440:70: warning: ‘static bool QPixmapCache::find(const QString&, QPixmap&)’ is deprecated: Use bool find(const QString &, QPixmap *) instead [-Wdeprecated-declarations] 440 | if (update_raster_image_ || ( !QPixmapCache::find(cache_key, pm))) { | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPixmapCache:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:40: /usr/include/x86_64-linux-gnu/qt5/QtGui/qpixmapcache.h:81:17: note: declared here 81 | static bool find(const QString &key, QPixmap &pixmap); | ^~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘virtual void ost::img::gui::DataViewerPanelBase::wheelEvent(QWheelEvent*)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:613:19: warning: ‘int QWheelEvent::delta() const’ is deprecated: Use angleDelta() [-Wdeprecated-declarations] 613 | if(event->delta()>0) { | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QResizeEvent:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:36: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘void ost::img::gui::DataViewerPanelBase::draw_pixel_values(QPainter&)’: /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:1074:62: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1074 | int string_w=painter.fontMetrics().width(value_string); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QWidget:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh:46, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:34: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:1090:62: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1090 | int string_w=painter.fontMetrics().width(value_string); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QWidget:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh:46, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:34: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/fft_panel.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/info_panel.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/img2qt.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/mask_overlay.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/null_overlay.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. 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CMakeFiles/ost_gui.dir/python_shell/state.cc.o CMakeFiles/ost_gui.dir/python_shell/transition.cc.o CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o CMakeFiles/ost_gui.dir/tools/map_tool.cc.o CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_gfx.so.2.2.0 ../../../stage/lib/libost_io.so.2.2.0 ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_seq_alg.so.2.2.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gui.so.2.2.0 ../../../stage/lib/libost_gui.so.2.2 ../../../stage/lib/libost_gui.so make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 96%] Built target ost_gui make -f modules/gui/src/CMakeFiles/gosty.dir/build.make modules/gui/src/CMakeFiles/gosty.dir/depend make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend.internal". [ 96%] Generating moc_gosty.cpp [ 96%] Generating qrc_dngr.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty.cpp_parameters cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/rcc --name dngr --output /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/qrc_dngr.cpp /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/dngr.qrc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/depend.internal". Scanning dependencies of target gosty make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/gosty.dir/build.make modules/gui/src/CMakeFiles/gosty.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 96%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o [ 97%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/qrc_dngr.cpp cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/gosty.dir/gosty.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gosty.cc [ 97%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/gosty.dir/moc_gosty.cpp.o -c /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty.cpp Scanning dependencies of target _ost_gui make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/wrap_gui.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/wrap_gui.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/wrap_gui.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_alignment_view.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_message_widget.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_message_widget.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/gosty.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/wrap_gui.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_alignment_view.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_message_widget.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 97%] Linking CXX executable ../../../stage/lib/openstructure/libexec/gosty cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gosty.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/gosty.dir/gosty.cc.o CMakeFiles/gosty.dir/moc_gosty.cpp.o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -o ../../../stage/lib/openstructure/libexec/gosty -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_gfx.so.2.2.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_win.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_gl_win.cc make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 97%] Built target gosty [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_tool.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_tool.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_tool.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_py_shell.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_py_shell.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gosty.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_gosty.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_gosty.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_gl_win.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_tool.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_py_shell.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_scene_win.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_gosty.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_sequence_viewer.cc In file included from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.hh:41, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_gosty.cc:39: /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_gosty.cc:24: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_scene_win.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_perspective.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_perspective.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_sequence_viewer.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_sip_handler.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_scene_selection.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_perspective.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_sip_handler.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_main_area.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_main_area.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_main_area.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_scene_selection.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_panels.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_panels.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_panels.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_menu_bar.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_main_area.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_file_loader.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_panels.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_menu_bar.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_file_viewer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_file_loader.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_widget.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_widget.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_widget.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_gl_canvas.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_file_viewer.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_widget.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_data_viewer.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_overlay.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_overlay.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/sip_handler.hh:22, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.cc:26: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_gl_canvas.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.hh:41, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.cc:26: /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QWidget:1, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/sip_handler.hh:24, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.hh:30, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_overlay_manager.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_overlay.cc:26: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_data_viewer.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_data_viewer.cc:27: /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:35, from /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_data_viewer.cc:27: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/export_overlay_manager.cc:16: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/gui/_ost_gui.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/presets.xml /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/scene/presets.xml cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/icons/color_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/color_icon.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/icons/preset_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/preset_icon.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/icons/render_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/render_icon.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/icons/tool_icon.png /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/tool_icon.png cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gui.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/gui/_ost_gui.so CMakeFiles/_ost_gui.dir/wrap_gui.cc.o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o CMakeFiles/_ost_gui.dir/export_tool.cc.o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o CMakeFiles/_ost_gui.dir/export_gosty.cc.o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o CMakeFiles/_ost_gui.dir/export_perspective.cc.o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o CMakeFiles/_ost_gui.dir/export_main_area.cc.o CMakeFiles/_ost_gui.dir/export_panels.cc.o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o CMakeFiles/_ost_gui.dir/export_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o CMakeFiles/_ost_gui.dir/export_overlay.cc.o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.2.0 /usr/lib/x86_64-linux-gnu/libpython3.9.so /usr/lib/x86_64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_gfx.so.2.2.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/color_options_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/color_options_widget.pyc\",\"color_options_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/color_select_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/color_select_widget.pyc\",\"color_select_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/combo_options_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/combo_options_widget.pyc\",\"combo_options_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/cpk_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/cpk_widget.pyc\",\"cpk_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/custom_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/custom_widget.pyc\",\"custom_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/gradient_editor_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_editor_widget.pyc\",\"gradient_editor_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/gradient_info_handler.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_info_handler.pyc\",\"gradient_info_handler.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/gradient_list_model.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_list_model.pyc\",\"gradient_list_model.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/gradient_preset_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_preset_widget.pyc\",\"gradient_preset_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/hsc_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/hsc_widget.pyc\",\"hsc_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/immutable_gradient_info_handler.pyc\",\"immutable_gradient_info_handler.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/immutable_preset_info_handler.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/immutable_preset_info_handler.pyc\",\"immutable_preset_info_handler.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/init_inspector.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/init_inspector.pyc\",\"init_inspector.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/inspector_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/inspector_widget.pyc\",\"inspector_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/map_level_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/map_level_widget.pyc\",\"map_level_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/preset.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset.pyc\",\"preset.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/remote.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/remote.pyc\",\"remote.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/preset_editor_list_model.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_editor_list_model.pyc\",\"preset_editor_list_model.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/preset_editor_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_editor_widget.pyc\",\"preset_editor_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/preset_info_handler.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_info_handler.pyc\",\"preset_info_handler.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/preset_list_model.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_list_model.pyc\",\"preset_list_model.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/preset_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_widget.pyc\",\"preset_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/render_mode_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_mode_widget.pyc\",\"render_mode_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/render_op.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_op.pyc\",\"render_op.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/render_options_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_options_widget.pyc\",\"render_options_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/scene_observer_impl.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/scene_observer_impl.pyc\",\"scene_observer_impl.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/scene_selection_helper.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/scene_selection_helper.pyc\",\"scene_selection_helper.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/simple_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/simple_widget.pyc\",\"simple_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/sline_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/sline_widget.pyc\",\"sline_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/toolbar_options_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/toolbar_options_widget.pyc\",\"toolbar_options_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/trace_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/trace_widget.pyc\",\"trace_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/tube_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/tube_widget.pyc\",\"tube_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/uniform_color_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/uniform_color_widget.pyc\",\"uniform_color_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/visibility_op.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/visibility_op.pyc\",\"visibility_op.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/line_trace_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/line_trace_widget.pyc\",\"line_trace_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/wireframe_widget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/wireframe_widget.pyc\",\"wireframe_widget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/scene/query_editor.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/query_editor.pyc\",\"query_editor.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/dng/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/dng/termuse.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/termuse.pyc\",\"termuse.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/dng/superpositiondialog.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/superpositiondialog.pyc\",\"superpositiondialog.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/dng/init.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/init.pyc\",\"init.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/dng/menu.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/menu.pyc\",\"menu.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/__init__.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/init_context_menu.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_context_menu.pyc\",\"init_context_menu.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/init_menubar.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_menubar.pyc\",\"init_menubar.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/init_spacenav.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_spacenav.pyc\",\"init_spacenav.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/init_splash.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_splash.pyc\",\"init_splash.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/trajectory_viewer.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./trajectory_viewer.pyc\",\"trajectory_viewer.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/helpwidget.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./helpwidget.pyc\",\"helpwidget.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/table.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./table.pyc\",\"table.py\",doraise=True)" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod/gosty_startup.py\",\"/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./gosty_startup.pyc\",\"gosty_startup.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] Built target _ost_gui make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake --color= Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/depend.internal". Dependee "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/depend.internal". Scanning dependencies of target ost_scripts make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_config /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost_config cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/bin/ost cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different dng /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/bin/dng cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/ost_startup.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/scripts/dng_startup.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/dng_startup.py make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] Built target ost_scripts make[2]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' dh_auto_test -a cd obj-x86_64-linux-gnu && make -j4 check ARGS\+=-j4 make[1]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/openstructure-VL5z08/openstructure-2.2.0 -B/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[2]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/openstructure-VL5z08/openstructure-2.2.0 -B/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/CMakeFiles 95 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake --color= make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-VL5z08/openstructure-2.2.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.1 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-VL5z08/openstructure-2.2.0/cmake_support/substitute.cmake make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-VL5z08/openstructure-2.2.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.1 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-VL5z08/openstructure-2.2.0/cmake_support/substitute.cmake make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-VL5z08/openstructure-2.2.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.1 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-VL5z08/openstructure-2.2.0/cmake_support/substitute.cmake cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/bin make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec [ 0%] Built target subst_ost_startup.py make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake --color= [ 0%] Built target subst_ost_config cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests [ 0%] Built target subst_dng make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-VL5z08/openstructure-2.2.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.1 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-VL5z08/openstructure-2.2.0/cmake_support/substitute.cmake [ 0%] Built target create_stage make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/config /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake --color= [ 0%] Built target subst_ost make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/export_helper/vector.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/config/./base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./base.hh make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./def.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./def.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/export_helper/generic_property_def.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./alignment_opts.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./exc.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./exc.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/config/./config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./clip_alignment.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/export_helper/vec_to_list_conv.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./geom.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./geom.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/config/./dllexport.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./dllexport.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./conservation.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/test_utils/compare_files.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/test_utils/compare_files.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./mat.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./generic_property.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./generic_property.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/config/./version.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./version.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./contact_prediction_score.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./integrity_error.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./integrity_error.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./mat2.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat2.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./contact_weight_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./mat3.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat3.hh [ 0%] Built target ost_config_headers make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./invalid_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./invalid_handle.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./mat4.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat4.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./distance_map.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vec.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./ptr_observer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./ptr_observer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_error.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_error.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vec2.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec2.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./log.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./log.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./entropy.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vec3.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec3.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./log_sink.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./log_sink.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./global_align.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vec4.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec4.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./profile.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./profile.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./ins_del.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vecmat_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./dyn_cast.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./dyn_cast.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./local_align.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vecmat2_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./stdint.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./stdint.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_group.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_group.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vecmat3_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./stdint_msc.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./stdint_msc.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_item.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_item.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vecmat4_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./range.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./range.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./circular_iterator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./semiglobal_align.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./sequence_identity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_path.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_path.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./constants.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./constants.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./sequence_similarity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./units.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./units.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_set.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_set.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./message.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./message.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./composite.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./subst_weight_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_visitor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_visitor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./platform.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./platform.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./variance_map.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./info_verbose_visitor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./composite2.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./item_type.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./string_ref.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./string_ref.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./composite3.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./pod_vector.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./pod_vector.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./composite_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./geom_info_conversion.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./fixed_string.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./fixed_string.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./composite2_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src/./item_type_cast.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type_cast.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src/./hmm_score.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./composite3_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3_op.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./tri_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./tri_matrix.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_info_headers make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./aligned_cuboid.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh [ 0%] Built target ost_seq_alg_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./vec_mat_predicates.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src/./boost_filesystem_helper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/pointer_iterator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./quat.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./quat.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh [ 0%] Built target ost_base_headers make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/atom_group.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./transform.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./transform.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/atom_prop.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./conop.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./conop.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./point_cloud.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./point_cloud.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./processor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./processor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_iterator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./amino_acids.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./amino_acids.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./sequence_list.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_list.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./diag.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./diag.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./model_check.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./model_check.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh [ 0%] Built target ost_geom_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./sequence_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./heuristic.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./heuristic.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./alignment_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./compound.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./sqlite_wrap.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/dihedral.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./compound_lib.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./sqlite_conv.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./sequence_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./aligned_region.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_region.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./linear_indexer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./linear_indexer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./rule_based.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./rule_based.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./paged_array.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./paged_array.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./aligned_column.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./minimal_compound_lib.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./aligned_column_iterator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./binary_container.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./binary_container.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./compound_lib_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/query_ast.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./invalid_sequence.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src/./extract_data_helper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/query_ast_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src/./ring_finder.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./ring_finder.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./views_from_sequences.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src/./profile_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./profile_handle.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/query_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_db_headers make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/query_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake --color= [ 0%] Built target ost_conop_headers make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh [ 0%] Built target ost_seq_headers make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/raster_image/raster_image.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./anisotropic.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/dispatch.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./auto_correlate.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./clear.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clear.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_iso_spec.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/map_octree.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./atom_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./clip_min_max.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./atom_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_def.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./conjugate.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/octree_isocont.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./atom_view.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_view.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./convolute.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./convolute.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./bond_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_factory.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/cartoon_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./correlate.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./correlate.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./bond_table.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_table.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./cross_correlate.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/custom_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./chain_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/cpk_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./density_slice.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./chain_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./dft.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./dft.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./chain_view.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_view.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./fft.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fft.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/debug_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./fftw_helper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./chain_type.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_type.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_visitor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/simple_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./chem_class.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_class.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_algorithm.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/sline_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./fill.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fill.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./chem_type.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_type.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./filter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./filter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/index.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/index.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./coord_group.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_group.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./fourier_filters.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/line_trace_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/type_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/backbone_trace.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./gaussian.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./coord_source.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_source.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/image_state/value_holder.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/entity_detail.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./gaussian_laplacian.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./in_mem_coord_source.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./algorithm.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./algorithm.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./coord_frame.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_frame.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./circle_mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./circle_mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./highest_peak_search_3d.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./editor_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./composite_mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./composite_mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./histogram.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./histogram.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./data_algorithm.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_algorithm.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./editor_type_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/connect_renderer_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./line_iterator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./data_observer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_observer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./data_types.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_types.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./mol.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./mol.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/mapped_property.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./local_sigma_threshold.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./data.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./mask_image.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./debug.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./debug.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./negate.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./negate.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./normalizer_factory.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./dllexport.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./dllexport.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/tabulated_trig.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./norm.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/impl/fast_spheres.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./extent_iterator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_iterator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./normalizer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./norm_linear.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_observer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/line_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./extent_mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./extent.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/custom_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_observer_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./norm_log.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/cpk_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_property_mapper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_factory.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_factory.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./norm_od.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/simple_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_view.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_view.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/sline_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./power_spectrum.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_visitor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/line_trace_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./randomize.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./randomize.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_handle_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/cartoon_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./entity_visitor_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/render_options/trace_render_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./smooth_mask_image.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./handle_type_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./stat.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./ics_editor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./ics_editor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_list.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_list.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./stat_accumulator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/by_element_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./not_connected_error.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./stat_min_max.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_state_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/by_chain_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./property_id.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./property_id.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./threshold.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./threshold.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image_state.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./query.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./transcendentals.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/uniform_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./image.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./query_error.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_error.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./inverted_mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./inverted_mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./transform.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./query_state.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_state.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./transform_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/entity_view_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./map.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./map.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./alg_transform.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./alg_mirror.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./residue_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./mask_base_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./alg_shift.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./discrete_shrink.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./mask_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./residue_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./transformation_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/color_ops/map_handle_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./mask_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./residue_prop.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_prop.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./transformations.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformations.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./render_pass.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_pass.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./residue_view.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_view.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./mask_visitor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_visitor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./bitmap_io.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./collada_exporter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./sec_structure.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./sec_structure.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./fractional_shift.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./spatial_organizer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./color.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./color.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./surface.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./normalizer_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./polar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./polar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./entity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./normalizer_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./surface_builder.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_builder.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./line_average.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_average.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./entity_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./null_data.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./null_data.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./observable.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./observable.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src/./rscrosscorr.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./paste_impl.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./paste_impl.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./builder.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./builder.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gl_helper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 0%] Built target ost_img_alg_headers make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./peak.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./peak.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./surface_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_handle.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./phase.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./phase.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_option_group.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./surface_prop.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_prop.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./physical_units.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./physical_units.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_options.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./pixel_sampling.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./torsion_handle.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_node_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./point_list.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./point_list.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./point.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./point.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/selection_tool.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_node_visitor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./transfer_connectivity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/measure_tool.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./polygon_mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./polygon_mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./query_view_wrapper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_object_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_option.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_object.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./progress.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./progress.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./view_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_manager.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./size.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./size.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./view_type_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_object_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_options_widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./spherical_mask.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./spherical_mask.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_prim.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./view_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/manipulator.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./util.cc /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./util.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./xcs_editor.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./symmetry_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/tool_options_win.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./util.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./bounding_box.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bounding_box.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gfx_test_object.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./transform.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./transform.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./value_util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./value_util.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/mouse_event.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/tools/map_tool.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./vecmat.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./vecmat.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./glwin_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./input.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./input.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src/./mask_info_convert.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh [ 0%] Built target ost_mol_headers make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_row.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./prim_list.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./prim_list.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/chemdict_parser.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/background_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./scene.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene.hh [ 0%] Built target ost_img_headers make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/conservation_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/star_parser.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/star_parser.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./selection.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./selection.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./svd_superpose.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/mmcif_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./surface.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./surface.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/secstr_row.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/mmcif_info.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./texture.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./texture.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./sec_structure_segments.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/io_profile.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/io_profile.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./vertex_array.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./local_dist_diff_test.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/dcd_io.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./distance_test_common.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./vertex_array_helper.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_crd_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./distance_rmsd_test.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./scene_observer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_pqr_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_model.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gl_include.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_include.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./superpose_frames.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_mae_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./filter_clashes.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_mmcif_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./glext_include.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glext_include.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_row.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./construct_cbeta.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./render_mode.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_mode.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./clash_score.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/pdb_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./trajectory_analysis.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./material.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./material.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./structure_analysis.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_pdb_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gradient.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./consistency_checks.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gradient_manager.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/tick_painter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/pdb_writer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./pdbize.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/title_row.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./adjacency_bitmap.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/entity_io_sdf_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./primitives.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./primitives.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/sdf_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./consistency_checks.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./povray_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_view_object.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/sdf_writer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./povray.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./contact_overlap.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./exporter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/main_thread_runner.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/save_entity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/save_entity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./exporter_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/load_entity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_entity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./domain_find.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/surface_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./similarity_matrix.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./gost_exporter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/completer_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./accessibility.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/load_surface.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_surface.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./sec_struct.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/surface_io_msms_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/pdb_str.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/gutter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./map_iso.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./nonstandard.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/mol/stereochemical_params_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./molck.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./molck.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./map_slab.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_slab.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/path_completer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/load_map.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/load_map.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./find_membrane.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src/./map_iso_prop.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_context_parser.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_df3_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src/./entity_to_density.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_completer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/image_format.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/image_format.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh [ 0%] Built target ost_gfx_headers make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend [ 0%] Built target ost_mol_alg_headers make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake --color= make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/config /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_dx_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/src/./wrap_tmalign.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_spi_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_situs_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh [ 0%] Built target ost_config make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_tokenizer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh [ 0%] Built target ost_bindings_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_mrc_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/geom/src/CMakeFiles/ost_geom.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_dat_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh [ 1%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_ipl_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/base/src/CMakeFiles/ost_base.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_jpk_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/geom/pymod/CMakeFiles/_ost_geom.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_nanoscope_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh [ 2%] Built target ost_base make -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh [ 3%] Built target _ost_geom cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_png_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/shell_history.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh Scanning dependencies of target ost_geom_tests cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_dm3_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/state_machine.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/map_io_tiff_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/info/src/CMakeFiles/ost_info.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/state.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/tiff_util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/tiff_util.hh [ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_composite3.cc [ 4%] Built target ost_info make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/transition.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/img/jpk_util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/jpk_util.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/sequence_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/base/pymod/CMakeFiles/_ost_base.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/fasta_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh [ 4%] Built target _ost_base cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/button_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/pir_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/drop_box.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/promod_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/img/base/src/CMakeFiles/ost_img.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/profile_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh [ 8%] Built target ost_img make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/hhm_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_manager.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/pssm_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/bottom_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/clustal_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/load.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/load.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/button_box.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_box.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/seq/save.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/save.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/event_button.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/event_button.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/base/src/CMakeFiles/ost_mol.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./binary_data_sink.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_widget_container.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh [ 13%] Built target ost_mol make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/info/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./io_manager.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_manager.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/panel_bar_widget_holder.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./binary_data_source.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_source.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/info/pymod/CMakeFiles/_ost_info.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/side_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./container_serialization.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./container_serialization.hh [ 14%] Built target _ost_info make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/splitter_panel_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./swap_util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./swap_util.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/panels/tabbed_panel_bar.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./io_utils.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_utils.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/context_menu.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./io_exception.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_exception.hh make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/current_selection_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/custom_part_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./convert.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./convert.hh [ 17%] Built target ost_img_alg make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/entity_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./converting_streams.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./converting_streams.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/img/base/pymod/CMakeFiles/_ost_img.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./formatted_line.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./formatted_line.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/entity_part_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/chemdict_parser.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh [ 20%] Built target _ost_img make -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/gfx_scene_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/star_parser.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./star_parser.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/label_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/mmcif_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/root_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/render_mode_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh Scanning dependencies of target ost_base_tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/build cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/mmcif_info.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_info.hh make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/render_modes_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/io_profile.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_profile.hh [ 20%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests/test_generic_property.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_node.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/dcd_io.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./dcd_io.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_crd_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_pqr_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_mae_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/messages/message_widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/messages/message_box_widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/messages/log_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/pdb_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_pdb_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/argand.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/pdb_writer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_writer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/entity_io_sdf_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/sdf_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/draw_overlay.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/sdf_writer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_writer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/save_entity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./save_entity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/drawing_functions.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/load_entity.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_entity.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/fft_panel.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/surface_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/load_surface.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_surface.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/info_panel.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/surface_io_msms_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/img2qt.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/pdb_str.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_str.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/mask_overlay.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./mol/stereochemical_params_reader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/null_overlay.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/sequence_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/fasta_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/pir_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/promod_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/profile_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/hhm_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/pssm_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/clustal_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/load.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./seq/save.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./save.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/load_map.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_map.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/strategies.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/strategies_fw.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_df3_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/data_viewer/viewer_normalizer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/image_format.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./image_format.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./file_browser.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_browser.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_dx_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./file_type_dialog.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_spi_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./file_viewer.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_viewer.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_situs_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./gl_canvas.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./gl_win.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_win.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_mrc_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./scene_menu.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_menu.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_dat_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./gosty_app.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gosty_app.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./admin.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./admin.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_ipl_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./module_config.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./module_config.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_jpk_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./main.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./main_area.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_area.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_nanoscope_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./perspective.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./perspective.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./scene_selection.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_selection.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./main_window.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_window.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_png_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_dm3_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./dock_widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/map_io_tiff_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/tiff_util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./tiff_util.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./dock_widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src/./img/jpk_util.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/io/./jpk_util.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./thin_splitter.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./widget.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 20%] Built target ost_io_headers cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./widget_geom_handler.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh make -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests.dir/DependInfo.cmake --color= cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./widget_pool.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_pool.hh Scanning dependencies of target ost_img_tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./widget_registry.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_registry.hh [ 20%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_data.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_data.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests/test_data.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./widget_state_saver.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src/./file_loader.hh /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_loader.hh make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 20%] Built target ost_gui_headers [ 20%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_extent.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_extent.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests/test_extent.cc make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_img_alg_tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 20%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_clear.cc [ 21%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_image.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests/test_image.cc [ 21%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_composite2.cc [ 22%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests/test_string_ref.cc [ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_conj.cc [ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_mat2.cc [ 24%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests/test_pod_vector.cc [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_convolute.cc [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests/test_image_state.cc [ 24%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/tests.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base_tests.dir/tests.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests/tests.cc [ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_mat3.cc [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_discrete_shrink.cc [ 24%] Linking CXX executable ../../../tests/ost_base_tests cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o CMakeFiles/ost_base_tests.dir/tests.cc.o -o ../../../tests/ost_base_tests -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 24%] Built target ost_base_tests make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_mol_tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 24%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_atom_groups.cc [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests/test_image_state_visitor.cc [ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_mat4.cc [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_fft.cc [ 24%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_chain.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_chain.cc [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_index.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_index.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests/test_index.cc [ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op2.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_op2.cc [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_point.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests/test_point.cc [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_fill.cc [ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_op3.cc [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests/test_sampling.cc [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_filter.cc [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_domains.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_domains.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests/test_domains.cc [ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_op4.cc [ 24%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_conn.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_conn.cc [ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_quat.cc [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_size.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_size.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests/test_size.cc [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests/test_value_holder.cc [ 24%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_coord_group.cc [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_histogram.cc [ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_vec2.cc [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/tests.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/tests.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests/tests.cc [ 24%] Linking CXX executable ../../../../tests/ost_img_tests cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_img_tests.dir/test_data.cc.o CMakeFiles/ost_img_tests.dir/test_extent.cc.o CMakeFiles/ost_img_tests.dir/test_image.cc.o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o CMakeFiles/ost_img_tests.dir/test_index.cc.o CMakeFiles/ost_img_tests.dir/test_point.cc.o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o CMakeFiles/ost_img_tests.dir/test_domains.cc.o CMakeFiles/ost_img_tests.dir/test_size.cc.o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o CMakeFiles/ost_img_tests.dir/tests.cc.o -o ../../../../tests/ost_img_tests -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_mirror.cc [ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_vec3.cc [ 24%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_builder.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_builder.cc make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 24%] Built target ost_img_tests [ 24%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_delete.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_delete.cc [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_negate.cc [ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_vec4.cc [ 25%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_entity.cc [ 25%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_ics.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_ics.cc [ 25%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_power_spectrum.cc [ 26%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_transform.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_transform.cc [ 26%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/tests.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/tests.cc [ 27%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o [ 27%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_query.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_query.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_query.cc cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_shift.cc [ 27%] Linking CXX executable ../../../tests/ost_geom_tests cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o CMakeFiles/ost_geom_tests.dir/tests.cc.o -o ../../../tests/ost_geom_tests -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 27%] Built target ost_geom_tests make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/base/src/CMakeFiles/ost_seq.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 28%] Built target ost_seq make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 30%] Built target _ost_mol make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/db/src/CMakeFiles/ost_db.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 31%] Built target ost_db make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 31%] Built target _ost_img_alg make -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_base_tests_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 31%] running checks for module base cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests && env OST_ROOT=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests/ost_base_tests Running 5 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 31%] Built target ost_base_tests_run make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/bindings/src/CMakeFiles/ost_bindings.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 31%] Built target ost_bindings make -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_geom_tests_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 31%] running checks for module geom cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests && env OST_ROOT=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests/ost_geom_tests Running 25 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 31%] Built target ost_geom_tests_run make -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_img_tests_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 32%] running checks for module img cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/base/tests && env OST_ROOT=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests/ost_img_tests Running 44 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 32%] Built target ost_img_tests_run make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_seq_tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 32%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/tests/test_sequence.cc [ 32%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_stat.cc [ 32%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_surface.cc [ 32%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_residue.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_residue.cc [ 32%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_transform.cc [ 32%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/tests/test_aligned_column.cc [ 32%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_view.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_view.cc [ 32%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/test_normalizer.cc [ 32%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_transfer_connectivity.cc [ 32%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/test_view_op.cc [ 32%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/tests/test_aligned_region.cc [ 32%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/tests.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests/tests.cc [ 32%] Linking CXX executable ../../../../tests/ost_img_alg_tests cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_img_alg_tests -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_img_alg.so.2.2.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 32%] Built target ost_img_alg_tests make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 34%] Built target ost_seq_alg make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 34%] Built target _ost_seq make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/conop/src/CMakeFiles/ost_conop.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 35%] Built target ost_conop make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/db/pymod/CMakeFiles/_ost_db.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 36%] Built target _ost_db make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 38%] Built target ost_mol_alg make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 38%] Built target _ost_bindings make -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_conop_tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 40%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/tests/test_amino_acids.cc [ 41%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/tests/test_alignment.cc [ 41%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/tests.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests/tests.cc make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_img_alg_tests_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 41%] running checks for module img_alg cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/img/alg/tests && env OST_ROOT=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests/ost_img_alg_tests Running 25 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 41%] Built target ost_img_alg_tests_run make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 41%] Built target _ost_seq_alg make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/gfx/src/CMakeFiles/ost_gfx.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 47%] Built target ost_gfx make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/conop/pymod/CMakeFiles/_ost_conop.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 48%] Built target _ost_conop make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/io/src/CMakeFiles/ost_io.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 52%] Built target ost_io make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 54%] Built target _ost_mol_alg make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_gfx_tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 54%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/tests.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_gfx_tests.dir/tests.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/tests/tests.cc [ 54%] Linking CXX executable ../../../../tests/ost_mol_tests cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o CMakeFiles/ost_mol_tests.dir/test_query.cc.o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o CMakeFiles/ost_mol_tests.dir/test_view.cc.o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o CMakeFiles/ost_mol_tests.dir/tests.cc.o -o ../../../../tests/ost_mol_tests -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 54%] Built target ost_mol_tests make -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/ost_io_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_io_tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 55%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_clustal.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_clustal.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_clustal.cc [ 56%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/tests/test_gfx_node.cc [ 56%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/tests/test_heuristic_conop.cc [ 56%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_profile.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/tests/test_profile.cc [ 56%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_io_pdb.cc [ 56%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_color.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/tests/test_color.cc [ 56%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/tests.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/tests.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/tests/tests.cc [ 56%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/tests.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/tests/tests.cc [ 56%] Linking CXX executable ../../../../tests/ost_seq_tests cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o CMakeFiles/ost_seq_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_tests -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 56%] Built target ost_seq_tests make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_mol_tests_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 57%] running checks for module mol cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/base/tests && env OST_ROOT=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests/ost_mol_tests [ 57%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/tests/test_rule_based_conop.cc Running 70 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 57%] Built target ost_mol_tests_run [ 57%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/helper.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/tests/helper.cc [ 57%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/tests/test_map_octree.cc [ 57%] Linking CXX executable ../../../tests/ost_gfx_tests cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_gfx_tests.dir/tests.cc.o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -o ../../../tests/ost_gfx_tests -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_gfx.so.2.2.0 ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 57%] Built target ost_gfx_tests make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_mol_alg_tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 57%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests/test_superposition.cc [ 57%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests/tests.cc [ 57%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests/test_consistency_checks.cc [ 58%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests/test_partial_sec_struct_assignment.cc make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_seq_tests_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 58%] running checks for module seq cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/tests && env OST_ROOT=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests/ost_seq_tests Running 32 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 58%] Built target ost_seq_tests_run make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_seq_alg_tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 58%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests/test_distance_analysis.cc [ 58%] Linking CXX executable ../../../tests/ost_conop_tests cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o CMakeFiles/ost_conop_tests.dir/tests.cc.o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o CMakeFiles/ost_conop_tests.dir/helper.cc.o -o ../../../tests/ost_conop_tests -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 58%] Built target ost_conop_tests make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 61%] Built target _ost_gfx make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/gui/src/CMakeFiles/ost_gui.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 93%] Built target ost_gui make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/io/pymod/CMakeFiles/_ost_io.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 93%] Built target _ost_io make -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_conop_tests_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 93%] running checks for module conop cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/tests && env OST_ROOT=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests/ost_conop_tests Running 16 test cases... unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file *** No errors detected make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 93%] Built target ost_conop_tests_run make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_gfx_tests_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 93%] running checks for module gfx cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/tests && env OST_ROOT=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests/ost_gfx_tests Running 13 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 93%] Built target ost_gfx_tests_run make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gui/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/gui/pymod/CMakeFiles/_ost_gui.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target _ost_gui [ 94%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_io_crd.cc [ 95%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests/test_merge_pairwise_alignments.cc [ 95%] Linking CXX executable ../../../../tests/ost_mol_alg_tests cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -o ../../../../tests/ost_mol_alg_tests -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_io.so.2.2.0 ../../../../stage/lib/libost_mol_alg.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target ost_mol_alg_tests make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_config /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost_config cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/bin/ost cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different dng /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/bin/dng cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/ost_startup.py cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/openstructure-VL5z08/openstructure-2.2.0/scripts/dng_startup.py /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages//ost/dng_startup.py make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target ost_scripts make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_mol_alg_tests_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks for module mol_alg cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests && env OST_ROOT=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests/ost_mol_alg_tests Running 4 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target ost_mol_alg_tests_run make -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_sec_struct.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_sec_struct.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests/test_sec_struct.py" s ---------------------------------------------------------------------- Ran 1 test in 0.000s OK (skipped=1) make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_sec_struct.py_run make -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_hbond.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_hbond.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests/test_hbond.py" .. ---------------------------------------------------------------------- Ran 2 tests in 0.182s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_hbond.py_run make -f modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_accessibility.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_accessibility.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests/test_accessibility.py" s[ 95%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests/test_sequence_identity.cc . ---------------------------------------------------------------------- Ran 2 tests in 27.497s OK (skipped=1) Could not find NACCESS, could not compare Accessiblity function... make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_accessibility.py_run make -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_seq.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_seq.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/base/tests/test_seq.py" .............. ---------------------------------------------------------------------- Ran 14 tests in 0.092s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_seq.py_run make -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/DependInfo.cmake --color= [ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_io_dcd.cc Scanning dependencies of target test_alignment_from_chain_view.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_alignment_from_chain_view.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests/test_alignment_from_chain_view.py" . ---------------------------------------------------------------------- Ran 1 test in 0.012s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_alignment_from_chain_view.py_run make -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_local_align.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_local_align.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests/test_local_align.py" [ 95%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests/tests.cc ... ---------------------------------------------------------------------- Ran 3 tests in 0.067s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_local_align.py_run make -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_semiglobal_align.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_semiglobal_align.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests/test_semiglobal_align.py" . ---------------------------------------------------------------------- Ran 1 test in 0.002s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_semiglobal_align.py_run make -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_global_align.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_global_align.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests/test_global_align.py" ... ---------------------------------------------------------------------- Ran 3 tests in 0.003s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_global_align.py_run make -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_renumber.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_renumber.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests/test_renumber.py" ........ ---------------------------------------------------------------------- Ran 8 tests in 0.617s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_renumber.py_run make -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_weight_matrix.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_weight_matrix.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests/test_weight_matrix.py" .. ---------------------------------------------------------------------- Ran 2 tests in 0.001s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_weight_matrix.py_run make -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/test_stutil.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_stutil.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_stutil.py [ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests/test_stutil.py" cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_io_sdf.cc ...... ---------------------------------------------------------------------- Ran 6 tests in 0.001s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_stutil.py_run make -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/test_table.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_table.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_table.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests/test_table.py" ....................................../usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/enrichment-out.png'> method() ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ost/table.py:2963: MatplotlibDeprecationWarning: The 'basex' parameter of __init__() has been renamed 'base' since Matplotlib 3.3; support for the old name will be dropped two minor releases later. plt.xscale('log', basex=10) [ 95%] Linking CXX executable ../../../../tests/ost_seq_alg_tests cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_alg_tests -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_io.so.2.2.0 ../../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so .make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target ost_seq_alg_tests [ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_io_sequence_profile.cc /usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-out.png'> method() ResourceWarning: Enable tracemalloc to get the object allocation traceback ./usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-same-val-out.png'> method() ResourceWarning: Enable tracemalloc to get the object allocation traceback ................./build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ost/table.py:2186: DeprecationWarning: scipy.isnan is deprecated and will be removed in SciPy 2.0.0, use numpy.isnan instead if scipy.isnan(correl): ......................... ---------------------------------------------------------------------- Ran 83 tests in 16.535s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_table.py_run make -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/test_log.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_log.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] running checks test_log.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/base/tests/test_log.py" .... ---------------------------------------------------------------------- Ran 4 tests in 0.081s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 95%] Built target test_log.py_run [ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_pir.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_pir.cc [ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_iomanager.cc [ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/tests.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/tests.cc [ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_star_parser.cc [ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_mmcif_reader.cc [ 96%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_mmcif_info.cc [ 96%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_io_img.cc [ 96%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -c /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_exceptions.cc make -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_naccess.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 96%] running checks test_naccess.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests/test_naccess.py" Could not find NACCESS, could not test binding... make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 96%] Built target test_naccess.py_run make -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_clustalw.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 96%] running checks test_clustalw.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests/test_clustalw.py" ....... ---------------------------------------------------------------------- Ran 7 tests in 10.280s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 96%] Built target test_clustalw.py_run make -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_blast.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 97%] running checks test_blast.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests/test_blast.py" Could not find blast executable: ignoring unit tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 97%] Built target test_blast.py_run make -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_cadscore.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 97%] running checks test_cadscore.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests/test_cadscore.py" .make -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_hhblits.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 97%] running checks test_hhblits.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests/test_hhblits.py" No HHblits installation found: skip unit tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 97%] Built target test_hhblits.py_run make -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_kclust.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 97%] running checks test_kclust.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests/test_kclust.py" Could not find kClust executable: ignoring unit tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 97%] Built target test_kclust.py_run make -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_msms.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 97%] running checks test_msms.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests/test_msms.py" Could not find msms executable: ignoring unit tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 97%] Built target test_msms.py_run make -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_tmtools.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/DependInfo.cmake --color= [ 97%] running checks test_tmtools.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests/test_tmtools.py" Scanning dependencies of target test_ialign.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 98%] running checks test_ialign.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests/test_ialign.py" .. ---------------------------------------------------------------------- Ran 2 tests in 0.301s OK Could not find tmalign executable: ignoring unit tests Could not find tmalign executable: ignoring unit tests . ---------------------------------------------------------------------- Ran 1 test in 0.204s OK Could not find ialign master perl script: ignoring unit tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 98%] Built target test_tmtools.py_run [ 98%] Built target test_ialign.py_run make -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/DependInfo.cmake --color= make -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_hbplus.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 98%] running checks test_hbplus.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests/test_hbplus.py" Scanning dependencies of target test_lga.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 98%] running checks test_lga.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/bindings/tests/test_lga.py" Could not find hbplus, could not test binding... make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 98%] Built target test_hbplus.py_run make -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/conop/tests/CMakeFiles/test_processor.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_processor.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 98%] running checks test_processor.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/conop/tests/test_processor.py" . ---------------------------------------------------------------------- Ran 1 test in 0.267s OK Could not find lga executable: ignoring unit tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 98%] Built target test_lga.py_run make -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_linear_db.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 98%] running checks test_linear_db.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/db/tests/test_linear_db.py" . ---------------------------------------------------------------------- Ran 1 test in 0.000s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 98%] Built target test_processor.py_run make -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/geom/tests/CMakeFiles/test_geom.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_geom.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 98%] running checks test_geom.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/geom/tests/test_geom.py" ... ---------------------------------------------------------------------- Ran 3 tests in 0.070s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [ 98%] Built target test_linear_db.py_run make -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_gfx.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] running checks test_gfx.py ........ ---------------------------------------------------------------------- Ran 8 tests in 0.003s OK cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/gfx/tests/test_gfx.py" make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] Built target test_geom.py_run make -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_io_pdb.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] running checks test_io_pdb.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_io_pdb.py" ...... ---------------------------------------------------------------------- Ran 6 tests in 0.072s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] Built target test_gfx.py_run make -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_io_mmcif.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] running checks test_io_mmcif.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests/test_io_mmcif.py" ...s ---------------------------------------------------------------------- Ran 4 tests in 0.006s OK (skipped=1) make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] Built target test_io_pdb.py_run make -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_pdbize.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] running checks test_pdbize.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests/test_pdbize.py" ......... ---------------------------------------------------------------------- Ran 8 tests in 0.072s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] Built target test_pdbize.py_run make -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_convenient_superpose.py_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] running checks test_convenient_superpose.py cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-VL5z08/openstructure-2.2.0/modules/mol/alg/tests/test_convenient_superpose.py" .........s ---------------------------------------------------------------------- Ran 10 tests in 6.092s OK (skipped=1) make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] Built target test_io_mmcif.py_run make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_seq_alg_tests_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] running checks for module seq_alg cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/seq/alg/tests && env OST_ROOT=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests/ost_seq_alg_tests Running 19 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' .[100%] Built target ost_seq_alg_tests_run ....... ---------------------------------------------------------------------- Ran 9 tests in 10.204s OK make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] Built target test_convenient_superpose.py_run [100%] Linking CXX executable ../../../tests/ost_io_tests cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openstructure-VL5z08/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_io_tests.dir/test_clustal.cc.o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o CMakeFiles/ost_io_tests.dir/test_pir.cc.o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o CMakeFiles/ost_io_tests.dir/tests.cc.o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -o ../../../tests/ost_io_tests -L/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage/lib /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_io.so.2.2.0 ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] Built target ost_io_tests make -f modules/io/tests/CMakeFiles/ost_io_tests_run.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/ost_io_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_io_tests_run make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/ost_io_tests_run.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests_run.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] running checks for module io cd /build/openstructure-VL5z08/openstructure-2.2.0/modules/io/tests && env OST_ROOT=/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/stage /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/tests/ost_io_tests Running 159 test cases... unable to open database file WARNING: skipping SEQRES import unit test. Compound lib is required unable to open database file WARNING: skipping mmcif_convert_seqres unit test. Compound library is required unable to open database file WARNING: skipping mmcif_entity_poly_tests unit test. Compound library is required unable to open database file *** No errors detected make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] Built target ost_io_tests_run . ---------------------------------------------------------------------- Ran 2 tests in 89.545s OK Could not find CAD score classic executables: ignoring unit tests make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] Built target test_cadscore.py_run make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' cd /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0 /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/CMakeFiles/check.dir/DependInfo.cmake --color= Scanning dependencies of target check make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[4]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[4]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' [100%] Built target check make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0' dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/openstructure-VL5z08/openstructure-2.2.0 -B/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Debug" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_base.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_base.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_base.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_base.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/export_helper/generic_property_def.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/export_helper/pair_to_tuple_conv.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/export_helper/vec_to_list_conv.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/test_utils/compare_files.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./generic_property.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./integrity_error.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./invalid_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./ptr_observer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./log.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./log_sink.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./profile.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./dyn_cast.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./stdint.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./stdint_msc.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./range.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./units.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./message.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./platform.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./string_ref.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./pod_vector.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./fixed_string.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./tri_matrix.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./boost_filesystem_helper.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/_ost_base.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/_ost_base.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/./settings.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/./stutil.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/./table.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/./table_selector.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/./xmlrunner.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/./testutils.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/./settings.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/./stutil.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/./table.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/./table_selector.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/./xmlrunner.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/./testutils.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_bindings.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_bindings.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_bindings.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_bindings.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/bindings/./wrap_tmalign.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/_ost_bindings.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/_ost_bindings.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./lga.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./hbplus.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./msms.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./tmtools.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./dssp.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./clustalw.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./utils.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./naccess.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./hhblits.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./hhblits2.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./hhblits3.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./blast.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./cadscore.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./kclust.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./ialign.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./lga.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./hbplus.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./msms.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./tmtools.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./dssp.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./clustalw.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./utils.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./naccess.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./hhblits.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./hhblits2.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./hhblits3.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./blast.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./cadscore.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./kclust.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/bindings/./ialign.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./dllexport.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/./version.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_conop.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_conop.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_conop.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_conop.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./conop.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./processor.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./amino_acids.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./diag.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./model_check.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./heuristic.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./compound.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./compound_lib.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./rule_based.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./minimal_compound_lib.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./compound_lib_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/conop/./ring_finder.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/bin/chemdict_tool -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/bin/chemdict_tool" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/conop/_ost_conop.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/conop/_ost_conop.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/conop/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/conop/./cleanup.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/conop/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/conop/./cleanup.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_db.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_db.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_db.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_db.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/db/./sqlite_wrap.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/db/./sqlite_conv.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/db/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/db/./linear_indexer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/db/./paged_array.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/db/./binary_container.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/db/./extract_data_helper.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/db/_ost_db.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/db/_ost_db.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/db/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/db/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_geom.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_geom.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_geom.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_geom.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/export_helper/vector.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./def.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./exc.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./geom.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./mat.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./mat2.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./mat3.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./mat4.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./vec.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./vec2.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./vec3.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./vec4.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./vecmat_op.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./vecmat2_op.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./vecmat3_op.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./vecmat4_op.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./circular_iterator.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./constants.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./composite.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./composite2.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./composite3.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./composite_op.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./composite2_op.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./composite3_op.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./aligned_cuboid.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./vec_mat_predicates.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./quat.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./transform.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./point_cloud.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/geom/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/geom/_ost_geom.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/geom/_ost_geom.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/geom/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/geom/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_gfx.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_gfx.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_gfx.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_gfx.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/map_iso_gen.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/map_iso_gen_s.hh -- Up-to-date: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/map_iso_gen_s.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/map_iso_spec.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/map_octree.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/octree_isocont.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/cartoon_renderer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/custom_renderer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/cpk_renderer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/debug_renderer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/simple_renderer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/sline_renderer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/trace_renderer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/line_trace_renderer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/backbone_trace.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/entity_detail.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/entity_renderer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/trace_renderer_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/connect_renderer_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/mapped_property.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/entity_renderer_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/tabulated_trig.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/impl/fast_spheres.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/render_options/render_options.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/render_options/line_render_options.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/render_options/custom_render_options.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/render_options/cpk_render_options.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/render_options/simple_render_options.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/render_options/sline_render_options.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/render_options/line_trace_render_options.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/render_options/cartoon_render_options.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/render_options/trace_render_options.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/color_ops/color_op.hh -- Installing: 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Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/./primitives.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/./povray_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/./povray.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/./exporter.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/./exporter_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/./gost_exporter.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/./map_handle_color_op.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/./map_iso.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/./map_slab.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gfx/./map_iso_prop.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/textures/test_texture.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/textures/glyph_texture.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gfx/_ost_gfx.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gfx/_ost_gfx.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gfx/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gfx/./py_gfx_obj.py -- Installing: 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/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/scene_win/scene_win.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/scene_win/scene_win_model.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/messages/message_widget.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/messages/message_box_widget.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/messages/log_reader.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/argand.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/data_viewer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/data_viewer_panel.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/data_viewer_panel_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/draw_overlay.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/drawing_functions.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/fft_panel.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/info_panel.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/img2qt.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/mask_overlay.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/null_overlay.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay_base_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager_gui.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager_observer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/pointlist_overlay.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/pointlist_overlay_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/strategies.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/strategies_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/data_viewer/viewer_normalizer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./file_browser.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./file_type_dialog.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./file_viewer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./gl_canvas.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./gl_win.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./scene_menu.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./gosty_app.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./admin.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./main.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./main_area.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./perspective.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./scene_selection.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./main_window.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./dock_widget.hh -- Up-to-date: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./dock_widget.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./thin_splitter.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./widget.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./widget_geom_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./widget_pool.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./widget_registry.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./widget_state_saver.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/gui/./file_loader.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/openstructure/libexec/gosty -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/openstructure/libexec/gosty" to "$ORIGIN/../../lib" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/add_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/close_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/critical_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/delete_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/distance_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/find_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/information_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/map_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/menubar_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/rigid_body_manipulator_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/selection_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/show_sidebar_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/site_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/split_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/warning_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/icons/refresh.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/gui/images/logo-small.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/_ost_gui.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/_ost_gui.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/color_options_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/color_select_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/combo_options_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/cpk_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/custom_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/gradient_editor_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/gradient_info_handler.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/gradient_list_model.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/gradient_preset_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/hsc_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/immutable_gradient_info_handler.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/immutable_preset_info_handler.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/init_inspector.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/inspector_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/map_level_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/preset.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/remote.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/preset_editor_list_model.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/preset_editor_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/preset_info_handler.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/preset_list_model.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/preset_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/render_mode_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/render_op.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/render_options_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/scene_observer_impl.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/scene_selection_helper.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/simple_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/sline_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/toolbar_options_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/trace_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/tube_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/uniform_color_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/visibility_op.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/line_trace_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/wireframe_widget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/query_editor.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/color_options_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/color_select_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/combo_options_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/cpk_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/custom_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/gradient_editor_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/gradient_info_handler.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/gradient_list_model.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/gradient_preset_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/hsc_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/immutable_gradient_info_handler.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/immutable_preset_info_handler.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/init_inspector.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/inspector_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/map_level_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/preset.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/remote.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/preset_editor_list_model.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/preset_editor_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/preset_info_handler.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/preset_list_model.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/preset_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/render_mode_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/render_op.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/render_options_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/scene_observer_impl.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/scene_selection_helper.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/simple_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/sline_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/toolbar_options_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/trace_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/tube_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/uniform_color_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/visibility_op.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/line_trace_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/wireframe_widget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/scene/query_editor.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/dng/__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/dng/termuse.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/dng/superpositiondialog.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/dng/init.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/dng/menu.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/dng/__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/dng/termuse.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/dng/superpositiondialog.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/dng/init.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/dng/menu.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./init_context_menu.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./init_menubar.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./init_spacenav.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./init_splash.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./trajectory_viewer.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./helpwidget.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./table.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./gosty_startup.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./init_context_menu.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./init_menubar.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./init_spacenav.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./init_splash.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./trajectory_viewer.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./helpwidget.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./table.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/gui/./gosty_startup.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/scene/presets.xml -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/scene/icons/color_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/scene/icons/preset_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/scene/icons/render_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/scene/icons/tool_icon.png -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_img.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_img.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_img.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_img.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/raster_image/raster_image.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/dispatch.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state_base_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state_def.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state_factory.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state_frequency_domain.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state_half_frequency_domain.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state_spatial_domain.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state_visitor.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state_algorithm.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/image_state_visitor_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/index.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/type_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/image_state/value_holder.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./algorithm.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./circle_mask.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./composite_mask.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./data_algorithm.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./data_observer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./data_types.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./data.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./debug.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./dllexport.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./extent_iterator.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./extent_mask.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./extent.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./image_factory.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./image_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./image_handle_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./image_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./image_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./image_list.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./image_state_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./image_state.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./image.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./inverted_mask.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./map.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./mask_base_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./mask_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./mask_op.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./mask_visitor.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./mask.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./normalizer_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./normalizer_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./null_data.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./observable.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./paste_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./peak.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./phase.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./physical_units.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./pixel_sampling.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./point_list.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./point.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./polygon_mask.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./progress.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./size.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./spherical_mask.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./util.cc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./util.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./value_util.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./vecmat.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/./mask_info_convert.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/img/_ost_img.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/img/_ost_img.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/img/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/img/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_img_alg.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_img_alg.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_img_alg.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_img_alg.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./anisotropic.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./auto_correlate.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./clear.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./clip_min_max.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./conjugate.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./convolute.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./correlate.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./cross_correlate.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./density_slice.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./dft.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./fft.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./fftw_helper.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./fill.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./filter.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./fourier_filters.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./gaussian_gradient_magnitude.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./gaussian.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./gaussian_laplacian.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./highest_peak_search_3d.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./histogram.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./line_iterator.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./local_sigma_threshold.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./mask_image.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./negate.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./normalizer_factory.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./norm.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./normalizer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./norm_linear.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./norm_log.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./norm_od.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./power_spectrum.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./randomize.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./smooth_mask_image.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./stat.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./stat_accumulator.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./stat_min_max.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./threshold.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./transcendentals.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./transform.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./transform_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./alg_transform.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./alg_mirror.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./alg_shift.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./discrete_shrink.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./transformation_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./transformations.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./fractional_shift.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./polar.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./line_average.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/img/alg/./rscrosscorr.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/img/alg/_ost_img_alg.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/img/alg/_ost_img_alg.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/img/alg/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/img/alg/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_info.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_info.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_info.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_info.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./info.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./info_error.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./info_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./info_impl_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./info_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./info_group.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./info_item.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./info_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./info_path.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./info_set.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./info_visitor.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./info_verbose_visitor.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./item_type.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./geom_info_conversion.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/info/./item_type_cast.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/info/_ost_info.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/info/_ost_info.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/info/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/info/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_io.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_io.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_io.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_io.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/chemdict_parser.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/star_parser.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/mmcif_reader.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/mmcif_info.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/io_profile.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/dcd_io.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/entity_io_crd_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/entity_io_pqr_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/entity_io_mae_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/entity_io_mmcif_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/entity_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/pdb_reader.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/entity_io_pdb_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/pdb_writer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/entity_io_sdf_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/sdf_reader.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/sdf_writer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/save_entity.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/load_entity.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/surface_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/load_surface.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/surface_io_msms_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/pdb_str.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/mol/stereochemical_params_reader.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/load_map.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_df3_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/image_format.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_dx_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_spi_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_situs_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_mrc_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_dat_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_ipl_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_jpk_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_nanoscope_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_png_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_dm3_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/map_io_tiff_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/tiff_util.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/img/jpk_util.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/seq/sequence_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/seq/fasta_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/seq/pir_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/seq/promod_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/seq/profile_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/seq/hhm_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/seq/pssm_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/seq/clustal_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/seq/load.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/seq/save.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./binary_data_sink.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./io_manager.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./binary_data_source.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./container_serialization.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./swap_util.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./io_utils.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./io_exception.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./convert.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./converting_streams.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./formatted_line.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./chemdict_parser.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./star_parser.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./mmcif_reader.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./mmcif_info.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./io_profile.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./dcd_io.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./entity_io_crd_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./entity_io_pqr_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./entity_io_mae_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./entity_io_mmcif_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./entity_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./pdb_reader.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./entity_io_pdb_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./pdb_writer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./entity_io_sdf_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./sdf_reader.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./sdf_writer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./save_entity.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./load_entity.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./surface_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./load_surface.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./surface_io_msms_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./pdb_str.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./stereochemical_params_reader.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./sequence_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./fasta_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./pir_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./promod_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./profile_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./hhm_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./pssm_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./clustal_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./load.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./save.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./load_map.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_df3_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./image_format.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_dx_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_spi_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_situs_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_mrc_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_dat_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_ipl_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_jpk_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_nanoscope_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_png_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_dm3_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./map_io_tiff_handler.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./tiff_util.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/io/./jpk_util.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/io/_ost_io.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/io/_ost_io.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/io/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/io/./remote.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/io/./repository.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/io/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/io/./remote.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/io/./repository.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_mol.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_mol.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_mol.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_mol.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/pointer_iterator.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/atom_group.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/atom_prop.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/atom_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/atom_impl_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/chain_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/chain_impl_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/connector_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/connector_impl_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/dihedral.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/entity_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/entity_impl_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/fragment_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/fragment_impl_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/query_ast.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/query_ast_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/query_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/query_impl_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/residue_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/residue_impl_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/surface_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/surface_impl_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/torsion_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/impl/torsion_impl_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./atom_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./atom_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./atom_view.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./bond_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./bond_table.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./chain_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./chain_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./chain_view.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./chain_type.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./chem_class.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./chem_type.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./coord_group.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./coord_source.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./in_mem_coord_source.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./coord_frame.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./editor_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./editor_type_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./mol.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./entity_base.hh -- Up-to-date: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./entity_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./entity_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./entity_observer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./entity_observer_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./entity_property_mapper.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./entity_view.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./entity_visitor.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./entity_visitor_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./handle_type_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./ics_editor.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./not_connected_error.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./property_id.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./query.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./query_error.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./query_state.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./residue_base.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./residue_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./residue_prop.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./residue_view.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./sec_structure.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./spatial_organizer.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./surface.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./surface_builder.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./builder.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./surface_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./surface_prop.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./torsion_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./transfer_connectivity.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./query_view_wrapper.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./view_op.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./view_type_fw.hh -- Up-to-date: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./view_op.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./xcs_editor.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./bounding_box.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./transform.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/_ost_mol.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/_ost_mol.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/bin/lddt -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/bin/lddt" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_mol_alg.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_mol_alg.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_mol_alg.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_mol_alg.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./svd_superpose.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./sec_structure_segments.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./local_dist_diff_test.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./distance_test_common.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./distance_rmsd_test.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./superpose_frames.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./filter_clashes.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./construct_cbeta.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./clash_score.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./trajectory_analysis.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./structure_analysis.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./consistency_checks.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./pdbize.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./adjacency_bitmap.hh -- Up-to-date: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./consistency_checks.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./contact_overlap.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./domain_find.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./similarity_matrix.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./accessibility.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./sec_struct.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./nonstandard.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./molck.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./find_membrane.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/mol/alg/./entity_to_density.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/atom_scattering_properties.txt -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/share/openstructure/stereo_chemical_props.txt -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/_ost_mol_alg.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/_ost_mol_alg.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./views.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./superpose.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./qsscoring.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./trajectory_analysis.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./structure_analysis.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./helix_kinks.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./hbond.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./views.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./superpose.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./qsscoring.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./trajectory_analysis.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./structure_analysis.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./helix_kinks.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/mol/alg/./hbond.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_seq.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_seq.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_seq.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_seq.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/impl/sequence_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/impl/sequence_impl_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/impl/sequence_list_impl_fw.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/impl/sequence_list_impl.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/impl/sequence_list_iterator.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/./sequence_list.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/./sequence_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/./alignment_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/./sequence_op.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/./aligned_region.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/./aligned_column.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/./aligned_column_iterator.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/./invalid_sequence.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/./views_from_sequences.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/./profile_handle.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/seq/_ost_seq.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/seq/_ost_seq.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/seq/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/seq/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_seq_alg.so.2.2.0 -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_seq_alg.so.2.2 -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_seq_alg.so.2.2.0" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/libost_seq_alg.so -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./alignment_opts.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./clip_alignment.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./conservation.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./contact_prediction_score.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./contact_weight_matrix.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./distance_map.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./entropy.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./global_align.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./ins_del.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./local_align.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./merge_pairwise_alignments.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./module_config.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./pair_subst_weight_matrix.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./semiglobal_align.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./sequence_identity.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./sequence_similarity.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./subst_weight_matrix.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./variance_map.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./default_contact_weight_matrix.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./hmm_pseudo_counts.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/include/ost/seq/alg/./hmm_score.hh -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/seq/alg/_ost_seq_alg.so -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/seq/alg/_ost_seq_alg.so" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/seq/alg/./__init__.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/seq/alg/./mat.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/seq/alg/./renumber.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/seq/alg/./__init__.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/seq/alg/./mat.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/seq/alg/./renumber.pyc -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/openstructure/libexec/ost_config -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/bin/ost -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/bin/dng -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/ost_startup.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/ost/dng_startup.py -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/bin/molck -- Set runtime path of "/build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/bin/molck" to "" -- Installing: /build/openstructure-VL5z08/openstructure-2.2.0/debian/tmp/usr/lib/openstructure/libexec/ost-compare-structures make[2]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0/obj-x86_64-linux-gnu' find debian/tmp/usr/lib -name '*.pyc' | xargs --no-run-if-empty rm make[1]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0' debian/rules override_dh_install make[1]: Entering directory '/build/openstructure-VL5z08/openstructure-2.2.0' dh_install find debian/python3-ost/usr/lib/python3/dist-packages -type f \ | xargs --no-run-if-empty chmod -x make[1]: Leaving directory '/build/openstructure-VL5z08/openstructure-2.2.0' dh_installdocs -a dh_installchangelogs -a dh_python3 -a I: dh_python3 fs:343: renaming _ost_base.so to _ost_base.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_info.so to _ost_info.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_bindings.so to _ost_bindings.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_mol.so to _ost_mol.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_mol_alg.so to _ost_mol_alg.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_gui.so to _ost_gui.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_geom.so to _ost_geom.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_seq.so to _ost_seq.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_seq_alg.so to _ost_seq_alg.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_conop.so to _ost_conop.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_db.so to _ost_db.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_io.so to _ost_io.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_gfx.so to _ost_gfx.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_img.so to _ost_img.cpython-39-x86_64-linux-gnu.so I: dh_python3 fs:343: renaming _ost_img_alg.so to _ost_img_alg.cpython-39-x86_64-linux-gnu.so dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package python3-ost: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-ost: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-ost: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-ost: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libost-gfx-dev' in '../libost-gfx-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-gui2.2-dbgsym' in '../libost-gui2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-base2.2' in '../libost-base2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-seq-alg2.2' in '../libost-seq-alg2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-base2.2-dbgsym' in '../libost-base2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-bindings2.2' in '../libost-bindings2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-gui-dev' in '../libost-gui-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-bindings2.2-dbgsym' in '../libost-bindings2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-seq-alg2.2-dbgsym' in '../libost-seq-alg2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-img-alg-dev' in '../libost-img-alg-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-img-dev' in '../libost-img-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-conop2.2' in '../libost-conop2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-info-dev' in '../libost-info-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-io-dev' in '../libost-io-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-mol-alg-dev' in '../libost-mol-alg-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-conop2.2-dbgsym' in '../libost-conop2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-mol-dev' in '../libost-mol-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-seq-alg-dev' in '../libost-seq-alg-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-seq2.2' in '../libost-seq2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-seq2.2-dbgsym' in '../libost-seq2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'openstructure' in '../openstructure_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-seq-dev' in '../libost-seq-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-db2.2' in '../libost-db2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-db2.2-dbgsym' in '../libost-db2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'openstructure-dbgsym' in '../openstructure-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-geom2.2' in '../libost-geom2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-geom2.2-dbgsym' in '../libost-geom2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-gfx2.2' in '../libost-gfx2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'python3-ost' in '../python3-ost_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-gfx2.2-dbgsym' in '../libost-gfx2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-img-alg2.2' in '../libost-img-alg2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-img-alg2.2-dbgsym' in '../libost-img-alg2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-gui2.2' in '../libost-gui2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-img2.2' in '../libost-img2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-img2.2-dbgsym' in '../libost-img2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-info2.2' in '../libost-info2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-info2.2-dbgsym' in '../libost-info2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-io2.2' in '../libost-io2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-io2.2-dbgsym' in '../libost-io2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'python3-ost-dbgsym' in '../python3-ost-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-mol-alg2.2' in '../libost-mol-alg2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-mol-alg2.2-dbgsym' in '../libost-mol-alg2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-mol2.2' in '../libost-mol2.2_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-mol2.2-dbgsym' in '../libost-mol2.2-dbgsym_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-base-dev' in '../libost-base-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-bindings-dev' in '../libost-bindings-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-conop-dev' in '../libost-conop-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-db-dev' in '../libost-db-dev_2.2.0-6_amd64.deb'. dpkg-deb: building package 'libost-geom-dev' in '../libost-geom-dev_2.2.0-6_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../openstructure_2.2.0-6_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/openstructure-VL5z08 /tmp/openstructure-2.2.0-6uty2fp1n I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.5au_Ja0NyG... I: success in 11684.8231 seconds md5: libost-base-dev_2.2.0-6_amd64.deb: OK md5: libost-base2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-base2.2_2.2.0-6_amd64.deb: OK md5: libost-bindings-dev_2.2.0-6_amd64.deb: OK md5: libost-bindings2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-bindings2.2_2.2.0-6_amd64.deb: OK md5: libost-conop-dev_2.2.0-6_amd64.deb: OK md5: libost-conop2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-conop2.2_2.2.0-6_amd64.deb: OK md5: libost-db-dev_2.2.0-6_amd64.deb: OK md5: libost-db2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-db2.2_2.2.0-6_amd64.deb: OK md5: libost-geom-dev_2.2.0-6_amd64.deb: OK md5: libost-geom2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-geom2.2_2.2.0-6_amd64.deb: OK md5: libost-gfx-dev_2.2.0-6_amd64.deb: OK md5: libost-gfx2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-gfx2.2_2.2.0-6_amd64.deb: OK md5: libost-gui-dev_2.2.0-6_amd64.deb: OK md5: libost-gui2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-gui2.2_2.2.0-6_amd64.deb: OK md5: libost-img-alg-dev_2.2.0-6_amd64.deb: OK md5: libost-img-alg2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-img-alg2.2_2.2.0-6_amd64.deb: OK md5: libost-img-dev_2.2.0-6_amd64.deb: OK md5: libost-img2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-img2.2_2.2.0-6_amd64.deb: OK md5: libost-info-dev_2.2.0-6_amd64.deb: OK md5: libost-info2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-info2.2_2.2.0-6_amd64.deb: OK md5: libost-io-dev_2.2.0-6_amd64.deb: OK md5: libost-io2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-io2.2_2.2.0-6_amd64.deb: OK md5: libost-mol-alg-dev_2.2.0-6_amd64.deb: OK md5: libost-mol-alg2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-mol-alg2.2_2.2.0-6_amd64.deb: OK md5: libost-mol-dev_2.2.0-6_amd64.deb: OK md5: libost-mol2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-mol2.2_2.2.0-6_amd64.deb: OK md5: libost-seq-alg-dev_2.2.0-6_amd64.deb: OK md5: libost-seq-alg2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-seq-alg2.2_2.2.0-6_amd64.deb: OK md5: libost-seq-dev_2.2.0-6_amd64.deb: OK md5: libost-seq2.2-dbgsym_2.2.0-6_amd64.deb: OK md5: libost-seq2.2_2.2.0-6_amd64.deb: OK md5: openstructure-dbgsym_2.2.0-6_amd64.deb: OK md5: openstructure_2.2.0-6_amd64.deb: OK md5: python3-ost-dbgsym_2.2.0-6_amd64.deb: OK md5: python3-ost_2.2.0-6_amd64.deb: OK sha1: libost-base-dev_2.2.0-6_amd64.deb: OK sha1: libost-base2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-base2.2_2.2.0-6_amd64.deb: OK sha1: libost-bindings-dev_2.2.0-6_amd64.deb: OK sha1: libost-bindings2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-bindings2.2_2.2.0-6_amd64.deb: OK sha1: libost-conop-dev_2.2.0-6_amd64.deb: OK sha1: libost-conop2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-conop2.2_2.2.0-6_amd64.deb: OK sha1: libost-db-dev_2.2.0-6_amd64.deb: OK sha1: libost-db2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-db2.2_2.2.0-6_amd64.deb: OK sha1: libost-geom-dev_2.2.0-6_amd64.deb: OK sha1: libost-geom2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-geom2.2_2.2.0-6_amd64.deb: OK sha1: libost-gfx-dev_2.2.0-6_amd64.deb: OK sha1: libost-gfx2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-gfx2.2_2.2.0-6_amd64.deb: OK sha1: libost-gui-dev_2.2.0-6_amd64.deb: OK sha1: libost-gui2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-gui2.2_2.2.0-6_amd64.deb: OK sha1: libost-img-alg-dev_2.2.0-6_amd64.deb: OK sha1: libost-img-alg2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-img-alg2.2_2.2.0-6_amd64.deb: OK sha1: libost-img-dev_2.2.0-6_amd64.deb: OK sha1: libost-img2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-img2.2_2.2.0-6_amd64.deb: OK sha1: libost-info-dev_2.2.0-6_amd64.deb: OK sha1: libost-info2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-info2.2_2.2.0-6_amd64.deb: OK sha1: libost-io-dev_2.2.0-6_amd64.deb: OK sha1: libost-io2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-io2.2_2.2.0-6_amd64.deb: OK sha1: libost-mol-alg-dev_2.2.0-6_amd64.deb: OK sha1: libost-mol-alg2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-mol-alg2.2_2.2.0-6_amd64.deb: OK sha1: libost-mol-dev_2.2.0-6_amd64.deb: OK sha1: libost-mol2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-mol2.2_2.2.0-6_amd64.deb: OK sha1: libost-seq-alg-dev_2.2.0-6_amd64.deb: OK sha1: libost-seq-alg2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-seq-alg2.2_2.2.0-6_amd64.deb: OK sha1: libost-seq-dev_2.2.0-6_amd64.deb: OK sha1: libost-seq2.2-dbgsym_2.2.0-6_amd64.deb: OK sha1: libost-seq2.2_2.2.0-6_amd64.deb: OK sha1: openstructure-dbgsym_2.2.0-6_amd64.deb: OK sha1: openstructure_2.2.0-6_amd64.deb: OK sha1: python3-ost-dbgsym_2.2.0-6_amd64.deb: OK sha1: python3-ost_2.2.0-6_amd64.deb: OK sha256: libost-base-dev_2.2.0-6_amd64.deb: OK sha256: libost-base2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-base2.2_2.2.0-6_amd64.deb: OK sha256: libost-bindings-dev_2.2.0-6_amd64.deb: OK sha256: libost-bindings2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-bindings2.2_2.2.0-6_amd64.deb: OK sha256: libost-conop-dev_2.2.0-6_amd64.deb: OK sha256: libost-conop2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-conop2.2_2.2.0-6_amd64.deb: OK sha256: libost-db-dev_2.2.0-6_amd64.deb: OK sha256: libost-db2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-db2.2_2.2.0-6_amd64.deb: OK sha256: libost-geom-dev_2.2.0-6_amd64.deb: OK sha256: libost-geom2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-geom2.2_2.2.0-6_amd64.deb: OK sha256: libost-gfx-dev_2.2.0-6_amd64.deb: OK sha256: libost-gfx2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-gfx2.2_2.2.0-6_amd64.deb: OK sha256: libost-gui-dev_2.2.0-6_amd64.deb: OK sha256: libost-gui2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-gui2.2_2.2.0-6_amd64.deb: OK sha256: libost-img-alg-dev_2.2.0-6_amd64.deb: OK sha256: libost-img-alg2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-img-alg2.2_2.2.0-6_amd64.deb: OK sha256: libost-img-dev_2.2.0-6_amd64.deb: OK sha256: libost-img2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-img2.2_2.2.0-6_amd64.deb: OK sha256: libost-info-dev_2.2.0-6_amd64.deb: OK sha256: libost-info2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-info2.2_2.2.0-6_amd64.deb: OK sha256: libost-io-dev_2.2.0-6_amd64.deb: OK sha256: libost-io2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-io2.2_2.2.0-6_amd64.deb: OK sha256: libost-mol-alg-dev_2.2.0-6_amd64.deb: OK sha256: libost-mol-alg2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-mol-alg2.2_2.2.0-6_amd64.deb: OK sha256: libost-mol-dev_2.2.0-6_amd64.deb: OK sha256: libost-mol2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-mol2.2_2.2.0-6_amd64.deb: OK sha256: libost-seq-alg-dev_2.2.0-6_amd64.deb: OK sha256: libost-seq-alg2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-seq-alg2.2_2.2.0-6_amd64.deb: OK sha256: libost-seq-dev_2.2.0-6_amd64.deb: OK sha256: libost-seq2.2-dbgsym_2.2.0-6_amd64.deb: OK sha256: libost-seq2.2_2.2.0-6_amd64.deb: OK sha256: openstructure-dbgsym_2.2.0-6_amd64.deb: OK sha256: openstructure_2.2.0-6_amd64.deb: OK sha256: python3-ost-dbgsym_2.2.0-6_amd64.deb: OK sha256: python3-ost_2.2.0-6_amd64.deb: OK Checksums: OK