Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/o/openmm/openmm_7.7.0+dfsg-5_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/openmm-7.7.0+dfsg-5g8xkuumv/openmm_7.7.0+dfsg-5_amd64.buildinfo Get source package info: openmm=7.7.0+dfsg-5 Source URL: http://snapshot.notset.fr/mr/package/openmm/7.7.0+dfsg-5/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.38-3 binutils-common=2.38-3 binutils-x86-64-linux-gnu=2.38-3 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 chrpath=0.16-2+b1 cmake=3.23.0-1 cmake-data=3.23.0-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-19 cython3=0.29.28-3 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-python=5.20220403 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 doxygen=1.9.1-2 dpkg=1.21.7 dpkg-dev=1.21.7 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-3 findutils=4.9.0-2 g++=4:11.2.0-2 g++-11=11.2.0-19 gcc=4:11.2.0-2 gcc-11=11.2.0-19 gcc-11-base=11.2.0-19 gcc-12-base=12-20220319-1 gettext=0.21-6 gettext-base=0.21-6 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libarchive13=3.6.0-1 libasan6=11.2.0-19 libatomic1=12-20220319-1 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libbinutils=2.38-3 libblas3=3.10.0-2 libblkid1=2.37.3-1+b1 libbrotli1=1.0.9-2+b3 libbsd0=0.11.6-1 libbz2-1.0=1.0.8-5 libc-bin=2.33-7 libc-dev-bin=2.33-7 libc6=2.33-7 libc6-dev=2.33-7 libcap-ng0=0.7.9-2.2+b2 libcap2=1:2.44-1 libcc1-0=12-20220319-1 libclang-cpp11=1:11.1.0-6+b2 libclang1-11=1:11.1.0-6+b2 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-3 libctf0=2.38-3 libcurl4=7.82.0-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdpkg-perl=1.21.7 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.8-1 libexpat1-dev=2.4.8-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.2.0-19 libgcc-s1=12-20220319-1 libgcrypt20=1.10.1-2 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgfortran5=12-20220319-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.3-4+b1 libgomp1=12-20220319-1 libgpg-error0=1.43-3 libgssapi-krb5-2=1.19.2-2+b1 libhogweed6=3.7.3-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=12-20220319-1 libjs-jquery=3.6.0+dfsg+~3.5.13-1 libjs-sphinxdoc=4.5.0-1 libjs-underscore=1.13.2~dfsg-2 libjsoncpp25=1.9.5-4 libk5crypto3=1.19.2-2+b1 libkeyutils1=1.6.1-3 libkrb5-3=1.19.2-2+b1 libkrb5support0=1.19.2-2+b1 liblapack3=3.10.0-2 liblbfgsb0=3.0+dfsg.3-10 libldap-2.5-0=2.5.11+dfsg-1 libllvm11=1:11.1.0-6+b2 liblsan0=12-20220319-1 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-3 libmagic1=1:5.41-3 libmd0=1.0.4-1 libmount1=2.37.3-1+b1 libmpc3=1.2.1-2 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.3-2 libncursesw6=6.3-2 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-14 libperl5.34=5.34.0-3 libpipeline1=1.5.5-1 libprocps8=2:3.3.17-7+b1 libpsl5=0.21.0-1.2 libpython3-dev=3.10.4-1 libpython3-stdlib=3.10.4-1 libpython3.10=3.10.4-3 libpython3.10-dev=3.10.4-3 libpython3.10-minimal=3.10.4-3 libpython3.10-stdlib=3.10.4-3 libpython3.9-minimal=3.9.12-1 libpython3.9-stdlib=3.9.12-1 libquadmath0=12-20220319-1 libreadline8=8.1.2-1 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.28+dfsg-2+b1 libsasl2-modules-db=2.1.28+dfsg-2+b1 libseccomp2=2.5.3-2 libselinux1=3.3-1+b2 libsigsegv2=2.14-1 libsmartcols1=2.37.3-1+b1 libsqlite3-0=3.38.2-1 libssh2-1=1.10.0-3 libssl1.1=1.1.1n-1 libstdc++-11-dev=11.2.0-19 libstdc++6=12-20220319-1 libsub-override-perl=0.09-2 libsystemd0=250.4-1 libtasn1-6=4.18.0-4 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-2 libtsan0=11.2.0-19 libubsan1=12-20220319-1 libuchardet0=0.0.7-1 libudev1=250.4-1 libunistring2=1.0-1 libuuid1=2.37.3-1+b1 libuv1=1.44.1-2 libxapian30=1.4.18-4 libxml2=2.9.13+dfsg-1 libz3-4=4.8.12-1+b1 libzstd1=1.4.10+dfsg-1 linux-libc-dev=5.16.18-1 login=1:4.11.1+dfsg1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3+b1 media-types=7.0.0 ncurses-base=6.3-2 ncurses-bin=6.3-2 ocl-icd-libopencl1=2.2.14-3 patch=2.7.6-7 perl=5.34.0-3 perl-base=5.34.0-3 perl-modules-5.34=5.34.0-3 po-debconf=1.0.21+nmu1 procps=2:3.3.17-7+b1 python3=3.10.4-1 python3-attr=21.2.0-1 python3-decorator=4.4.2-2 python3-dev=3.10.4-1 python3-distutils=3.9.12-1 python3-iniconfig=1.1.1-2 python3-lib2to3=3.9.12-1 python3-minimal=3.10.4-1 python3-more-itertools=8.10.0-2 python3-numpy=1:1.21.5-1 python3-packaging=21.3-1 python3-pkg-resources=59.6.0-1.2 python3-pluggy=1.0.0-1 python3-py=1.10.0-1 python3-pyparsing=3.0.7-1 python3-pytest=6.2.5-2 python3-scipy=1.7.3-2 python3-toml=0.10.2-1 python3.10=3.10.4-3 python3.10-dev=3.10.4-3 python3.10-minimal=3.10.4-3 python3.9=3.9.12-1 python3.9-minimal=3.9.12-1 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 swig=4.0.2-2 swig4.0=4.0.2-2 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 tzdata=2022a-1 util-linux=2.37.3-1+b1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220405T204912Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20220405T204912Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220406T090904Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d openmm=7.7.0+dfsg-5 && mkdir -p /build/openmm-LB2V4D && dpkg-source --no-check -x /*.dsc /build/openmm-LB2V4D/openmm-7.7.0+dfsg && chown -R builduser:builduser /build/openmm-LB2V4D" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1649172027" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/openmm-LB2V4D /tmp/openmm-7.7.0+dfsg-5g8xkuumv bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220406T090904Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.egtT_8UsLr as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.egtT_8UsLr Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220406T090904Z unstable/main amd64 libfakeroot amd64 1.28-1 [48.2 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220406T090904Z unstable/main amd64 fakeroot amd64 1.28-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (975 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4702 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.28-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.28-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.28-1_amd64.deb ... Unpacking fakeroot (1.28-1) ... Setting up libfakeroot:amd64 (1.28-1) ... Setting up fakeroot (1.28-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220405T204912Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20220405T204912Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220406T090904Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.egtT_8UsLr Get:1 http://snapshot.notset.fr/archive/debian/20220405T204912Z unstable InRelease [165 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220406T090904Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20220405T204912Z unstable/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220405T204912Z unstable/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220405T204912Z unstable/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220405T204912Z unstable/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220405T204912Z unstable/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220405T204912Z unstable/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20220405T204912Z unstable/main Sources [12.9 MB] Get:4 http://snapshot.notset.fr/archive/debian/20220405T204912Z unstable/main amd64 Packages [12.4 MB] Fetched 25.4 MB in 21s (1212 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.egtT_8UsLr I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d openmm=7.7.0+dfsg-5 && mkdir -p /build/openmm-LB2V4D && dpkg-source --no-check -x /*.dsc /build/openmm-LB2V4D/openmm-7.7.0+dfsg && chown -R builduser:builduser /build/openmm-LB2V4D"' exec /tmp/mmdebstrap.egtT_8UsLr Reading package lists... NOTICE: 'openmm' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/openmm.git Please use: git clone https://salsa.debian.org/debichem-team/openmm.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 11.0 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220405T204912Z unstable/main openmm 7.7.0+dfsg-5 (dsc) [2429 B] Get:2 http://snapshot.notset.fr/archive/debian/20220405T204912Z unstable/main openmm 7.7.0+dfsg-5 (tar) [11.0 MB] Get:3 http://snapshot.notset.fr/archive/debian/20220405T204912Z unstable/main openmm 7.7.0+dfsg-5 (diff) [15.5 kB] Fetched 11.0 MB in 9s (1278 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'openmm_7.7.0+dfsg-5.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting openmm in /build/openmm-LB2V4D/openmm-7.7.0+dfsg dpkg-source: info: unpacking openmm_7.7.0+dfsg.orig.tar.xz dpkg-source: info: unpacking openmm_7.7.0+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-tests.patch dpkg-source: info: applying default_plugin_dir.diff dpkg-source: info: applying ignore-stochastic-test-failures.patch dpkg-source: info: applying reproducible-build.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1649172027" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.egtT_8UsLr dpkg-buildpackage: info: source package openmm dpkg-buildpackage: info: source version 7.7.0+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --with numpy3,python3 dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --buildsystem=cmake --with numpy3,python3 dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg' dh_auto_configure -- -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_C_FLAGS_RELEASE="-g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" -DCMAKE_CXX_FLAGS_RELEASE="-g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" -DCMAKE_SHARED_LINKER_FLAGS_RELEASE="-Wl,-z,relro -Wl,--as-needed" -DCMAKE_BUILD_RPATH_USE_ORIGIN=ON -DCMAKE_BUILD_TYPE=Release -DOPENMM_BUILD_AMOEBA_PLUGIN=ON -DOPENMM_BUILD_RPMD_PLUGIN=ON -DOPENMM_BUILD_DRUDE_PLUGIN=ON -DOPENMM_BUILD_SERIALIZATION_SUPPORT=ON -DOPENMM_BUILD_C_AND_FORTRAN_WRAPPERS=OFF cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_VERBOSE_MAKEFILE=ON "-DCMAKE_C_FLAGS_RELEASE=-g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "-DCMAKE_CXX_FLAGS_RELEASE=-g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "-DCMAKE_SHARED_LINKER_FLAGS_RELEASE=-Wl,-z,relro -Wl,--as-needed" -DCMAKE_BUILD_RPATH_USE_ORIGIN=ON -DCMAKE_BUILD_TYPE=Release -DOPENMM_BUILD_AMOEBA_PLUGIN=ON -DOPENMM_BUILD_RPMD_PLUGIN=ON -DOPENMM_BUILD_DRUDE_PLUGIN=ON -DOPENMM_BUILD_SERIALIZATION_SUPPORT=ON -DOPENMM_BUILD_C_AND_FORTRAN_WRAPPERS=OFF .. -- Found PythonInterp: /usr/bin/python3.10 (found version "3.10.4") -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. CMake Warning (dev) at /usr/share/cmake-3.23/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (OPENCL) does not match the name of the calling package (OpenCL). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake_modules/FindOpenCL.cmake:86 (find_package_handle_standard_args) CMakeLists.txt:343 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find OPENCL (missing: OPENCL_LIBRARY OPENCL_INCLUDE_DIR) -- Found Doxygen: /usr/bin/doxygen (found version "1.9.1") found components: doxygen missing components: dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR OPENMM_BUILD_SERIALIZATION_SUPPORT -- Build files have been written to: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg' dh_auto_build cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/openmm-LB2V4D/openmm-7.7.0+dfsg -B/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/OpenMM.dir/build.make CMakeFiles/OpenMM.dir/depend make -f wrappers/python/CMakeFiles/BuildModule.dir/build.make wrappers/python/CMakeFiles/BuildModule.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/BuildModule.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/OpenMM.dir/build.make CMakeFiles/OpenMM.dir/build make -f wrappers/python/CMakeFiles/BuildModule.dir/build.make wrappers/python/CMakeFiles/BuildModule.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 0%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostat.cpp.o [ 0%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/MANIFEST.in to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/MANIFEST.in /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostat.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostat.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/AndersenThermostat.cpp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/MANIFEST.in /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/MANIFEST.in [ 0%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/__init__.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/__init__.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/__init__.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/__init__.py [ 0%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/__init__.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/__init__.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/__init__.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/__init__.py [ 0%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/AndersenThermostatImpl.cpp [ 0%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/amberinpcrdfile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/amberinpcrdfile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/amberinpcrdfile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/amberinpcrdfile.py [ 0%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/amberprmtopfile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/amberprmtopfile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/amberprmtopfile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/amberprmtopfile.py [ 0%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/BrownianIntegrator.cpp [ 0%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AssertionUtilities.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/AssertionUtilities.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/AssertionUtilities.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/AssertionUtilities.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/AssertionUtilities.cpp [ 0%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/charmmcrdfiles.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/charmmcrdfiles.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/charmmcrdfiles.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/charmmcrdfiles.py [ 0%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/charmmpsffile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/charmmpsffile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/charmmpsffile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/charmmpsffile.py [ 0%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/charmmparameterset.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/charmmparameterset.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/charmmparameterset.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/charmmparameterset.py [ 0%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CMAPTorsionForce.cpp [ 0%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/checkpointreporter.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/checkpointreporter.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/checkpointreporter.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/checkpointreporter.py [ 2%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CMAPTorsionForceImpl.cpp [ 2%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/amd.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/amd.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/amd.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/amd.py [ 2%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/DLPE.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/DLPE.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/DLPE.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/DLPE.pdb [ 2%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/DMPC.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/DMPC.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/DMPC.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/DMPC.pdb [ 2%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/DOPC.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/DOPC.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/DOPC.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/DOPC.pdb [ 2%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/DPPC.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/DPPC.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/DPPC.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/DPPC.pdb [ 2%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/DLPC.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/DLPC.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/DLPC.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/DLPC.pdb [ 2%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/POPC.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/POPC.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/POPC.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/POPC.pdb [ 2%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/absinth.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/absinth.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/absinth.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/absinth.xml [ 2%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber03.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber03.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/POPE.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/POPE.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber03.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber03.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/POPE.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/POPE.pdb [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber10.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber10.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber10.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber10.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber03_obc.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber03_obc.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber03_obc.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber03_obc.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber10_obc.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber10_obc.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber10_obc.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber10_obc.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14-all.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14-all.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14-all.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14-all.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/DNA.OL15.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/DNA.OL15.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/DNA.OL15.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/DNA.OL15.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/GLYCAM_06j-1.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/GLYCAM_06j-1.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/RNA.OL3.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/RNA.OL3.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/GLYCAM_06j-1.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/GLYCAM_06j-1.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/RNA.OL3.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/RNA.OL3.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/DNA.bsc1.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/DNA.bsc1.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/DNA.bsc1.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/DNA.bsc1.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/lipid17.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/lipid17.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/lipid17.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/lipid17.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/protein.ff14SB.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/protein.ff14SB.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/protein.ff14SB.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/protein.ff14SB.xml [ 4%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CMMotionRemover.cpp [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/protein.ff15ipq.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/protein.ff15ipq.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/protein.ff15ipq.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/protein.ff15ipq.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/spce.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/spce.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/spce.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/spce.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/tip3p.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip3p.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/tip3p.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip3p.xml [ 4%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/tip4pew.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip4pew.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/tip4pew.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip4pew.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/tip4pfb.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip4pfb.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/tip4pfb.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip4pfb.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/tip3pfb.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip3pfb.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber14/tip3pfb.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip3pfb.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber96.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber96.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber96.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber96.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber96_obc.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber96_obc.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber96_obc.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber96_obc.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber99Test.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber99Test.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber99Test.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber99Test.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber99sb.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber99sb.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber99sb.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber99sb.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber99_obc.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber99_obc.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber99_obc.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber99_obc.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber99sbildn.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber99sbildn.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber99sbildn.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber99sbildn.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amberfb15.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amberfb15.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amberfb15.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amberfb15.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber99sbnmr.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber99sbnmr.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amber99sbnmr.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amber99sbnmr.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amoeba2009_gk.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2009_gk.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amoeba2009.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2009.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amoeba2009.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2009.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amoeba2009_gk.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2009_gk.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amoeba2013.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2013.xml [ 6%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amoeba2013_gk.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2013_gk.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amoeba2013.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2013.xml /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CMMotionRemoverImpl.cpp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amoeba2013_gk.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2013_gk.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amoeba2018_gk.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2018_gk.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amoeba2018_gk.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2018_gk.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amoeba2018.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2018.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/amoeba2018.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2018.xml [ 6%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CompoundIntegrator.cpp [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36.xml [ 6%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/spce.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/spce.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/tip3p-pme-b.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip3p-pme-b.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/spce.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/spce.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/tip3p-pme-b.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip3p-pme-b.xml [ 8%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/tip3p-pme-f.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip3p-pme-f.xml /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CompiledExpressionSet.cpp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/tip3p-pme-f.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip3p-pme-f.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/tip4p2005.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip4p2005.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/tip4p2005.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip4p2005.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/tip4pew.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip4pew.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/tip4pew.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip4pew.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/tip5pew.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip5pew.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/tip5pew.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip5pew.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/tip5p.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip5p.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/tip5p.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip5p.xml [ 8%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/Context.cpp [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/water.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/water.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm36/water.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/water.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm_polar_2013.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm_polar_2013.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm_polar_2013.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm_polar_2013.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm_polar_2019.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm_polar_2019.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/glycam-hydrogens.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/glycam-hydrogens.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/glycam-hydrogens.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/glycam-hydrogens.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/charmm_polar_2019.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/charmm_polar_2019.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/hydrogens.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/hydrogens.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/hydrogens.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/hydrogens.xml [ 8%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/ContextImpl.cpp [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/iamoeba.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/iamoeba.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/iamoeba.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/iamoeba.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/implicit/gbn.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/implicit/gbn.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/implicit/gbn.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/implicit/gbn.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/implicit/gbn2.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/implicit/gbn2.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/implicit/gbn2.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/implicit/gbn2.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/implicit/hct.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/implicit/hct.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/implicit/hct.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/implicit/hct.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/implicit/obc1.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/implicit/obc1.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/implicit/obc1.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/implicit/obc1.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/implicit/obc2.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/implicit/obc2.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/implicit/obc2.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/implicit/obc2.xml [ 8%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/pdbNames.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/pdbNames.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/pdbNames.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/pdbNames.xml [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/residues.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/residues.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/residues.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/residues.xml [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/spce.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/spce.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/spce.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/spce.pdb [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/spce.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/spce.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/spce.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/spce.xml [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/swm4ndp.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/swm4ndp.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/swm4ndp.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/swm4ndp.xml [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/test.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/test.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/test.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/test.pdb [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip3p.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip3p.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip3p.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip3p.pdb [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip3p.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip3p.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip3p.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip3p.xml [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip3pfb.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip3pfb.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip3pfb.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip3pfb.xml [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip4pew.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip4pew.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip4pew.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip4pew.pdb [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip4pew.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip4pew.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip4pew.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip4pew.xml [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip4pfb.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip4pfb.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip4pfb.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip4pfb.xml [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip5p.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip5p.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip5p.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip5p.pdb [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip5p.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip5p.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/data/tip5p.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/data/tip5p.xml [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/dcdfile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/dcdfile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/dcdfile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/dcdfile.py [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/dcdreporter.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/dcdreporter.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/dcdreporter.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/dcdreporter.py [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/desmonddmsfile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/desmonddmsfile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/desmonddmsfile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/desmonddmsfile.py [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/element.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/element.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/element.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/element.py [ 10%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/forcefield.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/forcefield.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/forcefield.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/forcefield.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/gromacsgrofile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/gromacsgrofile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/gromacsgrofile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/gromacsgrofile.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/gromacstopfile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/gromacstopfile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/gromacstopfile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/gromacstopfile.py [ 12%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomAngleForce.cpp [ 12%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomAngleForceImpl.cpp [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/__init__.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/__init__.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/__init__.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/__init__.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/amber_file_parser.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/amber_file_parser.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/amber_file_parser.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/amber_file_parser.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/argtracker.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/argtracker.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/argtracker.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/argtracker.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/charmm/__init__.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/__init__.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/charmm/__init__.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/__init__.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/charmm/_charmmfile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/_charmmfile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/charmm/_charmmfile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/_charmmfile.py [ 12%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomBondForce.cpp [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/charmm/exceptions.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/exceptions.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/charmm/exceptions.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/exceptions.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/charmm/topologyobjects.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/topologyobjects.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/charmm/topologyobjects.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/topologyobjects.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/compiled.pyx to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/compiled.pyx cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/compiled.pyx /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/compiled.pyx [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/customgbforces.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/customgbforces.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/customgbforces.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/customgbforces.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbstructure.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbstructure.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbstructure.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbstructure.py [ 12%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomBondForceImpl.cpp [ 12%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomCVForce.cpp [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/__init__.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/__init__.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/__init__.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/__init__.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/reader/PdbxContainers.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxContainers.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/reader/PdbxContainers.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxContainers.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/reader/PdbxParser.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxParser.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/reader/PdbxParser.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxParser.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py [ 12%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReader.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxReader.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReader.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxReader.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReaderTests.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxReaderTests.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReaderTests.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxReaderTests.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/reader/__init__.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/__init__.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/reader/__init__.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/__init__.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/writer/PdbxWriter.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/writer/PdbxWriter.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/writer/PdbxWriter.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/writer/PdbxWriter.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/writer/PdbxWriterTests.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/writer/PdbxWriterTests.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/writer/PdbxWriterTests.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/writer/PdbxWriterTests.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/writer/__init__.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/writer/__init__.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/pdbx/writer/__init__.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/writer/__init__.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/singleton.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/singleton.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/singleton.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/singleton.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/unitcell.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/unitcell.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/internal/unitcell.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/internal/unitcell.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/metadynamics.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/metadynamics.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/metadynamics.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/metadynamics.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/modeller.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/modeller.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/modeller.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/modeller.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/pdbfile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/pdbfile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/pdbfile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/pdbfile.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/pdbreporter.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/pdbreporter.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/pdbreporter.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/pdbreporter.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/pdbxfile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/pdbxfile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/pdbxfile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/pdbxfile.py [ 14%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomCVForceImpl.cpp [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/simulatedtempering.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/simulatedtempering.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/simulatedtempering.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/simulatedtempering.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/simulation.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/simulation.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/simulation.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/simulation.py [ 14%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomCentroidBondForce.cpp [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/statedatareporter.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/statedatareporter.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/statedatareporter.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/statedatareporter.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/topology.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/topology.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/app/topology.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/app/topology.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/mtsintegrator.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/mtsintegrator.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/mtsintegrator.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/mtsintegrator.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/typemaps.i to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/typemaps.i cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/typemaps.i /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/typemaps.i [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/OpenMM.i to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/OpenMM.i cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/OpenMM.i /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/OpenMM.i [ 14%] Parsing OpenMM header files with doxygen... cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/src/swig_doxygen/doxygen && /usr/bin/doxygen warning: Tag 'SYMBOL_CACHE_SIZE' at line 289 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 473 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 762 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 817 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1158 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1164 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1329 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1351 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/internal Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/internal Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include/openmm Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include/openmm/internal Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/src Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/internal Searching for files in directory /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/src Reading and parsing tag files Parsing files Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/AndersenThermostat.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/AndersenThermostat.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/BrownianIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/BrownianIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CMAPTorsionForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CMAPTorsionForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CMMotionRemover.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CMMotionRemover.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CompoundIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CompoundIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Context.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Context.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomAngleForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomAngleForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomBondForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomBondForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomCentroidBondForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomCentroidBondForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomCompoundBondForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomCompoundBondForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomCVForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomCVForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomExternalForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomExternalForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomGBForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomGBForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomHbondForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomHbondForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomManyParticleForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomManyParticleForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomNonbondedForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomNonbondedForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomTorsionForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomTorsionForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Force.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Force.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/GayBerneForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/GayBerneForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/GBSAOBCForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/GBSAOBCForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/HarmonicAngleForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/HarmonicAngleForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/HarmonicBondForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/HarmonicBondForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Integrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Integrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/LangevinIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/LangevinIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/LangevinMiddleIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/LangevinMiddleIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/LocalEnergyMinimizer.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/LocalEnergyMinimizer.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/MonteCarloBarostat.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/MonteCarloBarostat.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/MonteCarloFlexibleBarostat.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/MonteCarloFlexibleBarostat.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NonbondedForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NonbondedForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NoseHooverChain.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NoseHooverChain.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NoseHooverIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NoseHooverIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/OpenMMException.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/OpenMMException.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/PeriodicTorsionForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/PeriodicTorsionForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/RBTorsionForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/RBTorsionForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/RMSDForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/RMSDForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/State.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/State.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/System.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/System.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/TabulatedFunction.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/TabulatedFunction.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Units.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Units.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/VariableLangevinIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/VariableLangevinIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/VariableVerletIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/VariableVerletIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Vec3.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Vec3.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/VerletIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/VerletIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/VirtualSite.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/VirtualSite.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/OpenMM.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/OpenMM.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include/openmm/Platform.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include/openmm/Platform.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include/openmm/serialization/SerializationNode.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include/openmm/serialization/SerializationNode.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include/openmm/serialization/SerializationProxy.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include/openmm/serialization/SerializationProxy.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include/openmm/serialization/XmlSerializer.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include/openmm/serialization/XmlSerializer.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include/openmm/RPMDMonteCarloBarostat.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include/openmm/RPMDMonteCarloBarostat.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeForce.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeForce.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeNoseHooverIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeNoseHooverIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeSCFIntegrator.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeSCFIntegrator.h... Preprocessing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/OpenMMDrude.h... Parsing file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/OpenMMDrude.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include/openmm/Platform.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/OpenMM.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/AndersenThermostat.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/BrownianIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CMAPTorsionForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CMMotionRemover.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CompoundIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Context.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomAngleForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomBondForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomCentroidBondForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomCompoundBondForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomCVForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomExternalForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomGBForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomHbondForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomManyParticleForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomNonbondedForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/CustomTorsionForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Force.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/GayBerneForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/GBSAOBCForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/HarmonicAngleForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/HarmonicBondForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Integrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/LangevinIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/LangevinMiddleIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/LocalEnergyMinimizer.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/MonteCarloBarostat.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/MonteCarloFlexibleBarostat.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NonbondedForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NoseHooverChain.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NoseHooverIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/OpenMMException.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/PeriodicTorsionForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/RBTorsionForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/RMSDForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/State.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/System.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/TabulatedFunction.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Units.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/VariableLangevinIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/VariableVerletIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Vec3.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/VerletIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/VirtualSite.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeForce.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeNoseHooverIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/DrudeSCFIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/OpenMMDrude.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include/openmm/RPMDMonteCarloBarostat.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include/openmm/serialization/SerializationNode.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include/openmm/serialization/SerializationProxy.h... Generating code for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include/openmm/serialization/XmlSerializer.h... Generating file documentation... Generating docs for file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Units.h... Generating page documentation... Generating docs for page deprecated... Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for compound OpenMM::AndersenThermostat... Generating docs for compound OpenMM::BrownianIntegrator... Generating docs for compound OpenMM::CMAPTorsionForce... Generating docs for compound OpenMM::CMMotionRemover... Generating docs for compound OpenMM::CompoundIntegrator... Generating docs for compound OpenMM::Context... Generating docs for compound OpenMM::CustomAngleForce... Generating docs for compound OpenMM::CustomBondForce... Generating docs for compound OpenMM::CustomCentroidBondForce... Generating docs for compound OpenMM::CustomCompoundBondForce... Generating docs for compound OpenMM::CustomCVForce... Generating docs for compound OpenMM::CustomExternalForce... Generating docs for compound OpenMM::CustomGBForce... Generating docs for compound OpenMM::CustomHbondForce... Generating docs for compound OpenMM::CustomIntegrator... Generating docs for compound OpenMM::CustomManyParticleForce... Generating docs for compound OpenMM::CustomNonbondedForce... Generating docs for compound OpenMM::CustomTorsionForce... Generating docs for compound OpenMM::Force... Generating docs for compound OpenMM::GayBerneForce... Generating docs for compound OpenMM::GBSAOBCForce... Generating docs for compound OpenMM::HarmonicAngleForce... Generating docs for compound OpenMM::HarmonicBondForce... Generating docs for compound OpenMM::Integrator... Generating docs for compound OpenMM::LangevinIntegrator... Generating docs for compound OpenMM::LangevinMiddleIntegrator... Generating docs for compound OpenMM::LocalEnergyMinimizer... Generating docs for compound OpenMM::MonteCarloAnisotropicBarostat... Generating docs for compound OpenMM::MonteCarloBarostat... Generating docs for compound OpenMM::MonteCarloFlexibleBarostat... Generating docs for compound OpenMM::MonteCarloMembraneBarostat... Generating docs for compound OpenMM::NonbondedForce... Generating docs for compound OpenMM::NoseHooverChain... Generating docs for compound OpenMM::NoseHooverIntegrator... Generating docs for compound OpenMM::OpenMMException... Generating docs for compound OpenMM::PeriodicTorsionForce... Generating docs for compound OpenMM::RBTorsionForce... Generating docs for compound OpenMM::RMSDForce... Generating docs for compound OpenMM::State... Generating docs for compound OpenMM::System... Generating docs for compound OpenMM::TabulatedFunction... Generating docs for compound OpenMM::Continuous1DFunction... Generating docs for compound OpenMM::Continuous2DFunction... Generating docs for compound OpenMM::Continuous3DFunction... Generating docs for compound OpenMM:[ 14%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomCentroidBondForceImpl.cpp :Discrete1DFunction... Generating docs for compound OpenMM::Discrete2DFunction... Generating docs for compound OpenMM::Discrete3DFunction... Generating docs for compound OpenMM::VariableLangevinIntegrator... Generating docs for compound OpenMM::VariableVerletIntegrator... Generating docs for compound OpenMM::Vec3... Generating docs for compound OpenMM::VerletIntegrator... Generating docs for compound OpenMM::VirtualSite... Generating docs for compound OpenMM::TwoParticleAverageSite... Generating docs for compound OpenMM::ThreeParticleAverageSite... Generating docs for compound OpenMM::OutOfPlaneSite... Generating docs for compound OpenMM::LocalCoordinatesSite... Generating docs for compound OpenMM::Platform... Generating docs for compound OpenMM::SerializationNode... Generating docs for compound OpenMM::SerializationProxy... Generating docs for compound OpenMM::XmlSerializer... Generating docs for compound OpenMM::AmoebaGeneralizedKirkwoodForce... Generating docs for compound OpenMM::AmoebaMultipoleForce... Generating docs for compound OpenMM::AmoebaTorsionTorsionForce... Generating docs for compound OpenMM::AmoebaVdwForce... Generating docs for compound OpenMM::AmoebaWcaDispersionForce... Generating docs for compound OpenMM::HippoNonbondedForce... Generating docs for compound OpenMM::RPMDIntegrator... Generating docs for compound OpenMM::RPMDMonteCarloBarostat... Generating docs for compound OpenMM::DrudeForce... Generating docs for compound OpenMM::DrudeIntegrator... Generating docs for compound OpenMM::DrudeLangevinIntegrator... Generating docs for compound OpenMM::DrudeNoseHooverIntegrator... Generating docs for compound OpenMM::DrudeSCFIntegrator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class OpenMM::AmoebaGeneralizedKirkwoodForce Generating XML output for class OpenMM::AmoebaMultipoleForce Generating XML output for class OpenMM::AmoebaTorsionTorsionForce Generating XML output for class OpenMM::AmoebaVdwForce Generating XML output for class OpenMM::AmoebaWcaDispersionForce Generating XML output for class OpenMM::AndersenThermostat Generating XML output for class OpenMM::CustomAngleForce::AngleInfo Generating XML output for class OpenMM::HarmonicAngleForce::AngleInfo Generating XML output for class OpenMM::CustomAngleForce::AngleParameterInfo Generating XML output for class OpenMM::CustomBondForce::BondInfo Generating XML output for class OpenMM::CustomCentroidBondForce::BondInfo Generating XML output for class OpenMM::CustomCompoundBondForce::BondInfo Generating XML output for class OpenMM::HarmonicBondForce::BondInfo Generating XML output for class OpenMM::CustomBondForce::BondParameterInfo Generating XML output for class OpenMM::CustomCentroidBondForce::BondParameterInfo Generating XML output for class OpenMM::CustomCompoundBondForce::BondParameterInfo Generating XML output for class OpenMM::BrownianIntegrator Generating XML output for class OpenMM::CMAPTorsionForce Generating XML output for class OpenMM::CMAPTorsionForce::CMAPTorsionInfo Generating XML output for class OpenMM::CMMotionRemover Generating XML output for class OpenMM::CompoundIntegrator Generating XML output for class OpenMM::CustomGBForce::ComputationInfo Generating XML output for class OpenMM::CustomIntegrator::ComputationInfo Generating XML output for class OpenMM::Context Generating XML output for class OpenMM::Continuous1DFunction Generating XML output for class OpenMM::Continuous2DFunction Generating XML output for class OpenMM::Continuous3DFunction Generating XML output for class OpenMM::CustomAngleForce Generating XML output for class OpenMM::CustomBondForce Generating XML output for class OpenMM::CustomCentroidBondForce Generating XML output for class OpenMM::CustomCompoundBondForce Generating XML output for class OpenMM::CustomCVForce Generating XML output for class OpenMM::CustomExternalForce Generating XML output for class OpenMM::CustomGBForce Generating XML output for class OpenMM::CustomHbondForce Generating XML output for class OpenMM::CustomIntegrator Generating XML output for class OpenMM::CustomManyParticleForce Generating XML output for class OpenMM::CustomNonbondedForce Generating XML output for class OpenMM::CustomTorsionForce Generating XML output for class OpenMM::Discrete1DFunction Generating XML output for class OpenMM::Discrete2DFunction Generating XML output for class OpenMM::Discrete3DFunction Generating XML output for class OpenMM::DrudeForce Generating XML output for class OpenMM::DrudeIntegrator Generating XML output for class OpenMM::DrudeLangevinIntegrator Generating XML output for class OpenMM::DrudeNoseHooverIntegrator Generating XML output for class OpenMM::DrudeSCFIntegrator Generating XML output for class OpenMM::GayBerneForce::ExceptionInfo Generating XML output for class OpenMM::HippoNonbondedForce::ExceptionInfo Generating XML output for class OpenMM::NonbondedForce::ExceptionInfo Generating XML output for class OpenMM::NonbondedForce::ExceptionOffsetInfo Generating XML output for class OpenMM::CustomGBForce::ExclusionInfo Generating XML output for class OpenMM::CustomHbondForce::ExclusionInfo Generating XML output for class OpenMM::CustomManyParticleForce::ExclusionInfo Generating XML output for class OpenMM::CustomNonbondedForce::ExclusionInfo Generating XML output for class OpenMM::Force Generating XML output for class OpenMM::CustomCentroidBondForce::FunctionInfo Generating XML output for class OpenMM::CustomCompoundBondForce::FunctionInfo Generating XML output for class OpenMM::CustomCVForce::FunctionInfo Generating XML output for class OpenMM::CustomGBForce::FunctionInfo Generating XML output for class OpenMM::CustomHbondForce::FunctionInfo Generating XML output for class OpenMM::CustomIntegrator::FunctionInfo Generating XML output for class OpenMM::CustomManyParticleForce::FunctionInfo Generating XML output for class OpenMM::CustomNonbondedForce::FunctionInfo Generating XML output for class OpenMM::GayBerneForce Generating XML output for class OpenMM::GBSAOBCForce Generating XML output for class OpenMM::CustomAngleForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomBondForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomCentroidBondForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomCompoundBondForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomCVForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomExternalForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomGBForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomHbondForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomManyParticleForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomNonbondedForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomTorsionForce::GlobalParameterInfo Generating XML output for class OpenMM::NonbondedForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomCentroidBondForce::GroupInfo Generating XML output for class OpenMM::CustomHbondForce::GroupInfo Generating XML output for class OpenMM::HarmonicAngleForce Generating XML output for class OpenMM::HarmonicBondForce Generating XML output for class OpenMM::HippoNonbondedForce Generating XML output for class OpenMM::Integrator Generating XML output for class OpenMM::CustomNonbondedForce::InteractionGroupInfo Generating XML output for class OpenMM::LangevinIntegrator Generating XML output for class OpenMM::LangevinMiddleIntegrator Generating XML output for class OpenMM::LocalCoordinatesSite Generating XML output for class OpenMM::LocalEnergyMinimizer Generating XML output for class OpenMM::CMAPTorsionForce::MapInfo Generating XML output for class OpenMM::MonteCarloAnisotropicBarostat Generating XML output for class OpenMM::MonteCarloBarostat Generating XML output for class OpenMM::MonteCarloFlexibleBarostat Generating XML output for class OpenMM::MonteCarloMembraneBarostat Generating XML output for class OpenMM::AmoebaMultipoleForce::MultipoleInfo Generating XML output for class OpenMM::NonbondedForce Generating XML output for class OpenMM::NoseHooverChain Generating XML output for class OpenMM::NoseHooverIntegrator Generating XML output for class OpenMM::OpenMMException Generating XML output for class OpenMM::OutOfPlaneSite Generating XML output for class OpenMM::AmoebaGeneralizedKirkwoodForce::ParticleInfo Generating XML output for class OpenMM::CustomExternalForce::ParticleInfo Generating XML output for class OpenMM::CustomGBForce::ParticleInfo Generating XML output for class OpenMM::CustomManyParticleForce::ParticleInfo Generating XML output for class OpenMM::CustomNonbondedForce::ParticleInfo Generating XML output for class OpenMM::DrudeForce::ParticleInfo Generating XML output for class OpenMM::GayBerneForce::ParticleInfo Generating XML output for class OpenMM::GBSAOBCForce::ParticleInfo Generating XML output for class OpenMM::HippoNonbondedForce::ParticleInfo Generating XML output for class OpenMM::NonbondedForce::ParticleInfo Generating XML output for class OpenMM::NonbondedForce::ParticleOffsetInfo Generating XML output for class OpenMM::CustomExternalForce::ParticleParameterInfo Generating XML output for class OpenMM::CustomManyParticleForce::ParticleParameterInfo Generating XML output for class OpenMM::AmoebaVdwForce::ParticleTypeInfo Generating XML output for class OpenMM::PeriodicTorsionForce Generating XML output for class OpenMM::PeriodicTorsionForce::PeriodicTorsionInfo Generating XML output for class OpenMM::CustomHbondForce::PerPairParameterInfo Generating XML output for class OpenMM::CustomGBForce::PerParticleParameterInfo Generating XML output for class OpenMM::CustomNonbondedForce::PerParticleParameterInfo Generating XML output for class OpenMM::Platform Generating XML output for class OpenMM::RBTorsionForce Generating XML output for class OpenMM::RBTorsionForce::RBTorsionInfo Generating XML output for class OpenMM::RMSDForce Generating XML output for class OpenMM::RPMDIntegrator Generating XML output for class OpenMM::RPMDMonteCarloBarostat Generating XML output for class OpenMM::DrudeForce::ScreenedPairInfo Generating XML output for class OpenMM::SerializationNode Generating XML output for class OpenMM::SerializationProxy Generating XML output for class OpenMM::State Generating XML output for class OpenMM::State::StateBuilder Generating XML output for class OpenMM::System Generating XML output for class OpenMM::TabulatedFunction Generating XML output for class OpenMM::ThreeParticleAverageSite Generating XML output for class OpenMM::CustomTorsionForce::TorsionInfo Generating XML output for class OpenMM::CustomTorsionForce::TorsionParameterInfo Generating XML output for class OpenMM::AmoebaTorsionTorsionForce::TorsionTorsionGridInfo Generating XML output for class OpenMM::AmoebaTorsionTorsionForce::TorsionTorsionInfo Generating XML output for class OpenMM::TwoParticleAverageSite Generating XML output for class OpenMM::AmoebaVdwForce::TypePairInfo Generating XML output for class OpenMM::CustomCVForce::VariableInfo Generating XML output for class OpenMM::VariableLangevinIntegrator Generating XML output for class OpenMM::VariableVerletIntegrator Generating XML output for class OpenMM::AmoebaVdwForce::VdwInfo Generating XML output for class OpenMM::Vec3 Generating XML output for class OpenMM::VerletIntegrator Generating XML output for class OpenMM::VirtualSite Generating XML output for class OpenMM::AmoebaWcaDispersionForce::WcaDispersionInfo Generating XML output for class OpenMM::XmlSerializer Generating XML output for namespace OpenMM Generating XML output for namespace std Generating XML output for file Platform.h Generating XML output for file OpenMM.h Generating XML output for file AndersenThermostat.h Generating XML output for file BrownianIntegrator.h Generating XML output for file CMAPTorsionForce.h Generating XML output for file CMMotionRemover.h Generating XML output for file CompoundIntegrator.h Generating XML output for file Context.h Generating XML output for file CustomAngleForce.h Generating XML output for file CustomBondForce.h Generating XML output for file CustomCentroidBondForce.h Generating XML output for file CustomCompoundBondForce.h Generating XML output for file CustomCVForce.h Generating XML output for file CustomExternalForce.h Generating XML output for file CustomGBForce.h Generating XML output for file CustomHbondForce.h Generating XML output for file CustomIntegrator.h Generating XML output for file CustomManyParticleForce.h Generating XML output for file CustomNonbondedForce.h Generating XML output for file CustomTorsionForce.h Generating XML output for file Force.h Generating XML output for file GayBerneForce.h Generating XML output for file GBSAOBCForce.h Generating XML output for file HarmonicAngleForce.h Generating XML output for file HarmonicBondForce.h Generating XML output for file Integrator.h Generating XML output for file LangevinIntegrator.h Generating XML output for file LangevinMiddleIntegrator.h Generating XML output for file LocalEnergyMinimizer.h Generating XML output for file MonteCarloAnisotropicBarostat.h Generating XML output for file MonteCarloBarostat.h Generating XML output for file MonteCarloFlexibleBarostat.h Generating XML output for file MonteCarloMembraneBarostat.h Generating XML output for file NonbondedForce.h Generating XML output for file NoseHooverChain.h Generating XML output for file NoseHooverIntegrator.h Generating XML output for file OpenMMException.h Generating XML output for file PeriodicTorsionForce.h Generating XML output for file RBTorsionForce.h Generating XML output for file RMSDForce.h Generating XML output for file State.h Generating XML output for file System.h Generating XML output for file TabulatedFunction.h Generating XML output for file Units.h Generating XML output for file VariableLangevinIntegrator.h Generating XML output for file VariableVerletIntegrator.h Generating XML output for file Vec3.h Generating XML output for file VerletIntegrator.h Generating XML output for file VirtualSite.h Generating XML output for file AmoebaGeneralizedKirkwoodForce.h Generating XML output for file AmoebaMultipoleForce.h Generating XML output for file AmoebaTorsionTorsionForce.h Generating XML output for file AmoebaVdwForce.h Generating XML output for file AmoebaWcaDispersionForce.h Generating XML output for file HippoNonbondedForce.h Generating XML output for file OpenMMAmoeba.h Generating XML output for file DrudeForce.h Generating XML output for file DrudeIntegrator.h Generating XML output for file DrudeLangevinIntegrator.h Generating XML output for file DrudeNoseHooverIntegrator.h Generating XML output for file DrudeSCFIntegrator.h Generating XML output for file OpenMMDrude.h Generating XML output for file RPMDIntegrator.h Generating XML output for file RPMDMonteCarloBarostat.h Generating XML output for file SerializationNode.h Generating XML output for file SerializationProxy.h Generating XML output for file XmlSerializer.h Generating XML output for page deprecated Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include/openmm/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include/openmm/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include/openmm/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include/openmm/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/ Generate XML output for dir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include/openmm/serialization/ Running plantuml with JAVA... lookup cache used 3465/65536 hits=20884 misses=3692 finished... [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swigInputConfig.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputConfig.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swigInputConfig.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputConfig.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swigInputBuilder.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swigInputBuilder.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/exceptions.i to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/exceptions.i cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/exceptions.i /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/exceptions.i [ 14%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomCompoundBondForce.cpp [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/extend.i to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/extend.i cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/extend.i /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/extend.i [ 14%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomCompoundBondForceImpl.cpp [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/features.i to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/features.i cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/features.i /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/features.i [ 14%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomExternalForce.cpp [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/header.i to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/header.i cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/header.i /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/header.i [ 14%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/pythoncode.i to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/pythoncode.i cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/src/swig_doxygen/swig_lib/python/pythoncode.i /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/pythoncode.i [ 17%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o [ 19%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/testInstallation.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/testInstallation.py /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomExternalForceImpl.cpp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/testInstallation.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/testInstallation.py [ 19%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/unit/__init__.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/unit/__init__.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/unit/__init__.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/unit/__init__.py [ 19%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/unit/basedimension.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/unit/basedimension.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/unit/basedimension.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/unit/basedimension.py [ 19%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/unit/baseunit.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/unit/baseunit.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/unit/baseunit.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/unit/baseunit.py [ 19%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/unit/constants.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm/unit/constants.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/openmm/unit/constants.py 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-E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestAmberPrmtopFile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestAmberPrmtopFile.py [ 21%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestBytes.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestBytes.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestBytes.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestBytes.py [ 21%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o [ 21%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestCharmmFiles.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCharmmFiles.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestCharmmFiles.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCharmmFiles.py [ 21%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomGBForce.cpp /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomGBForceImpl.cpp [ 21%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestCheckpointReporter.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCheckpointReporter.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestCheckpointReporter.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestCheckpointReporter.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestDcdFile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDcdFile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestDcdFile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDcdFile.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestDesmondDMSFile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDesmondDMSFile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestDesmondDMSFile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestDesmondDMSFile.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestElement.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestElement.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestElement.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestElement.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestForceField.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestForceField.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestForceField.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestForceField.py [ 23%] CMake-copying file 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object CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomHbondForce.cpp [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestIntegrators.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestIntegrators.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestIntegrators.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestIntegrators.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestMetadynamics.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestMetadynamics.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestMetadynamics.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestMetadynamics.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestModeller.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestModeller.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestModeller.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestModeller.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestNumpyCompatibility.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestNumpyCompatibility.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestNumpyCompatibility.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestNumpyCompatibility.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestPatches.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPatches.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestPatches.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPatches.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestPdbFile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbFile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestPdbFile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbFile.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestPdbxFile.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbxFile.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestPdbxFile.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPdbxFile.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestPickle.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPickle.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestPickle.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestPickle.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestSimulatedTempering.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulatedTempering.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestSimulatedTempering.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulatedTempering.py [ 23%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestSimulation.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulation.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestSimulation.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSimulation.py [ 23%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT 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/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestSwigWrappers.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestSwigWrappers.py [ 25%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestTopology.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestTopology.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestTopology.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestTopology.py [ 25%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/TestUnitCell.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/TestUnitCell.py cd 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cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/1T2Y.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/1T2Y.pdb [ 25%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.gro to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.gro cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.gro /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.gro [ 25%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.top to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.top cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/2ci2.pdb.top /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.top [ 25%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/4TVP-dmj_wat-ion.psf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/4TVP-dmj_wat-ion.psf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/4TVP-dmj_wat-ion.psf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/4TVP-dmj_wat-ion.psf [ 25%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/5dhfr_cube.pdb to 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/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/aidilnaaaaa.top /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.top [ 27%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml [ 27%] CMake-copying file 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copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml [ 27%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml [ 27%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml [ 27%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomIntegrator.cpp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml [ 27%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala3_solv.crd to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.crd cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala3_solv.crd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.crd [ 27%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala3_solv.parm7 to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.parm7 cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala3_solv.parm7 /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.parm7 [ 27%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomIntegratorUtilities.cpp [ 27%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala3_solv.psf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.psf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala3_solv.psf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.psf [ 27%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.crd to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.crd cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.crd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.crd [ 27%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.psf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.psf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala3_solv_drude.psf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.psf [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.crd to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.crd cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.crd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.crd [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.pdb [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.psf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.psf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.psf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.psf [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.vpsf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.vpsf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.vpsf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.vpsf [ 29%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomManyParticleForce.cpp [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.xpsf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.xpsf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala_ala_ala.xpsf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.xpsf [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala_ala_ala_drude.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala_drude.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ala_ala_ala_drude.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala_drude.pdb [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-amoeba-forces.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-amoeba-forces.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-amoeba-forces.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-amoeba-forces.xml [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.inpcrd to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.inpcrd cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.inpcrd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.inpcrd [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.pdb [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.prmtop to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.prmtop cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-explicit.prmtop /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.prmtop [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.inpcrd to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.inpcrd [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.inpcrd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.inpcrd cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml [ 29%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.pdb [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.prmtop to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.prmtop cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/alanine-dipeptide-implicit.prmtop /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.prmtop [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/altlocs2.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/altlocs2.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/altlocs2.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/altlocs2.pdb [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/amber.ncrst to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amber.ncrst cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/amber.ncrst /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amber.ncrst [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/altlocs.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/altlocs.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/altlocs.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/altlocs.pdb [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/amoeba-ion-in-water.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amoeba-ion-in-water.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/amoeba-ion-in-water.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/amoeba-ion-in-water.pdb [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_lig.dms to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_lig.dms cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_lig.dms /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_lig.dms [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_rcpt.dms to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_rcpt.dms cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/bcd-nabumetone_rcpt.dms /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_rcpt.dms [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/bnz.gro to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bnz.gro cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/bnz.gro /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bnz.gro [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/bnz.top to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bnz.top cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/bnz.top /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bnz.top [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/bpti.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bpti.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/bpti.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/bpti.pdb [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/charmm-solvated/envi.str to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/envi.str cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/charmm-solvated/envi.str /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/envi.str [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.prm to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.prm cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.prm /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.prm [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.rtf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.rtf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/charmm-solvated/m14.rtf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.rtf [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/charmm22.par to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.par cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/charmm22.par /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.par [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/charmm22.rtf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.rtf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/charmm22.rtf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/charmm22.rtf [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/chl1.crd to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chl1.crd cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/chl1.crd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chl1.crd [ 31%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/chl1.psf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chl1.psf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/chl1.psf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chl1.psf [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.crd to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.crd cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.crd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.crd [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/crds_box.rst7 to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_box.rst7 [ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/crds_box.rst7 /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_box.rst7 /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomManyParticleForceImpl.cpp [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.psf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.psf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/chlb_cgenff.psf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.psf [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/crds_vels.rst7 to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels.rst7 cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/crds_vels.rst7 /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels.rst7 [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/crds_vels_box.rst7 to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels_box.rst7 cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/crds_vels_box.rst7 /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crds_vels_box.rst7 [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/crdsonly.rst7 to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crdsonly.rst7 cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/crdsonly.rst7 /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/crdsonly.rst7 [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/cyt-gua-cyt.crd to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/cyt-gua-cyt.crd cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/cyt-gua-cyt.crd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/cyt-gua-cyt.crd [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/explicit.top to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/explicit.top cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/explicit.top /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/explicit.top [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/cyt-gua-cyt.psf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/cyt-gua-cyt.psf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/cyt-gua-cyt.psf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/cyt-gua-cyt.psf [ 34%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomNonbondedForce.cpp [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ff14ipq.parm7 to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.parm7 cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ff14ipq.parm7 /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.parm7 [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ff_with_includes.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff_with_includes.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ff_with_includes.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff_with_includes.xml [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ff14ipq.rst7 to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.rst7 cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ff14ipq.rst7 /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.rst7 [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/formaldehyde.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/formaldehyde.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/formaldehyde.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/formaldehyde.pdb [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/gaffwat.parm7 to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gaffwat.parm7 cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/gaffwat.parm7 /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gaffwat.parm7 [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/glycopeptide.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/glycopeptide.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/glycopeptide.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/glycopeptide.pdb [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/gpcr.cif to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gpcr.cif cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/gpcr.cif /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/gpcr.cif [ 34%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/implicit.top to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/implicit.top cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/implicit.top /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/implicit.top [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/improper.psf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/improper.psf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/improper.psf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/improper.psf [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/impropers_ordering_tetrapeptide.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/impropers_ordering_tetrapeptide.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/impropers_ordering_tetrapeptide.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/impropers_ordering_tetrapeptide.pdb [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/insertions.pdbx to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/insertions.pdbx cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/insertions.pdbx /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/insertions.pdbx [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ionic.gro to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.gro cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ionic.gro /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.gro [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ions.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ions.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.pdb [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ionic.top to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.top cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ionic.top /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ionic.top [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ions.psf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.psf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/ions.psf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/ions.psf [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit-forces.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit-forces.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit-forces.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit-forces.xml [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/lysozyme-implicit.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit.pdb [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/methanol_ions.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/methanol_ions.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.pdb [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/methanol-box.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol-box.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/methanol-box.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol-box.pdb [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/methanol_ions.psf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.psf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/methanol_ions.psf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/methanol_ions.psf [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/multichain.pdbx to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/multichain.pdbx cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/multichain.pdbx /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/multichain.pdbx [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/nacl-water.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/nacl-water.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/nacl-water.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/nacl-water.pdb [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/nucleic.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/nucleic.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/nucleic.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/nucleic.pdb [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/par_all22_prot.inp to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot.inp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/par_all22_prot.inp /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot.inp [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/par_all36_cgenff.prm to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_cgenff.prm cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/par_all36_cgenff.prm /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_cgenff.prm [ 36%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/par_all22_prot_with_mass.inp to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot_with_mass.inp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/par_all22_prot_with_mass.inp /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all22_prot_with_mass.inp [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/par_all36_lipid.prm to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_lipid.prm cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/par_all36_lipid.prm /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_lipid.prm [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/par_all36_prot.prm to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_prot.prm cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/par_all36_prot.prm /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/par_all36_prot.prm [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/test_amber_ff.xml to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/test_amber_ff.xml cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/test_amber_ff.xml /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/test_amber_ff.xml [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/tip5p.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tip5p.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/tip5p.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tip5p.pdb [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/top_all36_cgenff.rtf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/top_all36_cgenff.rtf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/top_all36_cgenff.rtf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/top_all36_cgenff.rtf [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/toppar_all36_lipid_cholesterol.str to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_all36_lipid_cholesterol.str cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/toppar_all36_lipid_cholesterol.str /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_all36_lipid_cholesterol.str [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/toppar_drude_master_protein_2013e.str to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_drude_master_protein_2013e.str cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/toppar_drude_master_protein_2013e.str /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_drude_master_protein_2013e.str [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/toppar_drude_nucleic_acid_2017b.str to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_drude_nucleic_acid_2017b.str cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/toppar_drude_nucleic_acid_2017b.str /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_drude_nucleic_acid_2017b.str [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/toppar_water_ions.str to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_water_ions.str cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/toppar_water_ions.str /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/toppar_water_ions.str [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/triclinic.gro to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.gro cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/triclinic.gro /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.gro [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/triclinic.pdb to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdb cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/triclinic.pdb /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdb [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/triclinic.pdbx to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdbx cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/triclinic.pdbx /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdbx [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.parm7 to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.parm7 [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.rst7 to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.rst7 cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.rst7 /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.rst7 cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/tz2.truncoct.parm7 /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.parm7 [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/water-box-216.prmtop to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water-box-216.prmtop cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/water-box-216.prmtop /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water-box-216.prmtop [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/water_methanol.prm to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.prm cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/water_methanol.prm /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.prm [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/water_methanol.psf to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.psf cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/systems/water_methanol.psf /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.psf [ 38%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/validateConstraints.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateConstraints.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/validateConstraints.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateConstraints.py [ 40%] CMake-copying file /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/validateModeller.py to /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateModeller.py cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /build/openmm-LB2V4D/openmm-7.7.0+dfsg/wrappers/python/tests/validateModeller.py /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/tests/validateModeller.py [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomNonbondedForceImpl.cpp [ 40%] Creating OpenMM Python swig input files... cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen && /usr/bin/python3.10 /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py -i /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/wrappers/python/src/swig_doxygen/doxygen/xml -c swigInputConfig.py -d OpenMM_docstring.i -o OpenMMSwigHeaders.i -a swig_lib/python/pythonprepend.i -z swig_lib/python/pythonappend.i -v 4.0.2 [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomTorsionForce.cpp AmoebaGeneralizedKirkwoodForce.getParticleParameters() returns charge as unit.elementary_charge AmoebaGeneralizedKirkwoodForce.getParticleParameters() returns radius as unit.nanometer AmoebaGeneralizedKirkwoodForce.getParticleParameters() returns scalingFactor as None AmoebaGeneralizedKirkwoodForce.getProbeRadius() returns unit.nanometer AmoebaGeneralizedKirkwoodForce.getSurfaceAreaFactor() returns unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer) AmoebaMultipoleForce.getCutoffDistance() returns unit.nanometer AmoebaMultipoleForce.getAEwald() returns 1/unit.nanometer AmoebaMultipoleForce.getMultipoleParameters() returns charge as unit.elementary_charge AmoebaMultipoleForce.getMultipoleParameters() returns molecularDipole as unit.elementary_charge*unit.nanometer AmoebaMultipoleForce.getMultipoleParameters() returns molecularQuadrupole as unit.elementary_charge*unit.nanometer**2 AmoebaMultipoleForce.getMultipoleParameters() returns axisType as None AmoebaMultipoleForce.getMultipoleParameters() returns multipoleAtomZ as None AmoebaMultipoleForce.getMultipoleParameters() returns multipoleAtomX as None AmoebaMultipoleForce.getMultipoleParameters() returns multipoleAtomY as None AmoebaMultipoleForce.getMultipoleParameters() returns thole as None AmoebaMultipoleForce.getMultipoleParameters() returns dampingFactor as None AmoebaMultipoleForce.getMultipoleParameters() returns polarity as unit.nanometer**3 AmoebaVdwForce.getParticleParameters() returns parentIndex as None AmoebaVdwForce.getParticleParameters() returns sigma as unit.nanometer AmoebaVdwForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole AmoebaVdwForce.getParticleParameters() returns reductionFactor as None AmoebaVdwForce.getParticleParameters() returns isAlchemical as None AmoebaVdwForce.getParticleParameters() returns typeIndex as None AmoebaVdwForce.getParticleTypeParameters() returns sigma as None AmoebaVdwForce.getParticleTypeParameters() returns epsilon as unit.nanometer AmoebaVdwForce.getTypePairParameters() returns type1 as None AmoebaVdwForce.getTypePairParameters() returns type2 as None AmoebaVdwForce.getTypePairParameters() returns sigma as None AmoebaVdwForce.getTypePairParameters() returns epsilon as unit.nanometer AmoebaVdwForce.getCutoffDistance() returns unit.nanometers AmoebaVdwForce.getCutoff() returns unit.nanometer AmoebaWcaDispersionForce.getParticleParameters() returns radius as unit.nanometer AmoebaWcaDispersionForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole AmoebaWcaDispersionForce.getEpso() returns unit.kilojoule_per_mole AmoebaWcaDispersionForce.getEpsh() returns unit.kilojoule_per_mole AmoebaWcaDispersionForce.getRmino() returns unit.nanometer AmoebaWcaDispersionForce.getRminh() returns unit.nanometer AmoebaWcaDispersionForce.getAwater() returns 1/(unit.nanometer*unit.nanometer*unit.nanometer) AmoebaWcaDispersionForce.getDispoff() returns unit.nanometer AndersenThermostat.getDefaultTemperature() returns unit.kelvin AndersenThermostat.getDefaultCollisionFrequency() returns unit.picosecond**-1 Integrator.getStepSize() returns unit.picosecond BrownianIntegrator.getTemperature() returns unit.kelvin BrownianIntegrator.getFriction() returns unit.picosecond**-1 CMAPTorsionForce.getMapParameters() returns size as None CMAPTorsionForce.getMapParameters() returns energy as unit.kilojoule_per_mole CompoundIntegrator.getStepSize() returns unit.picosecond Context.getTime() returns unit.picosecond CustomGBForce.getCutoffDistance() returns unit.nanometers CustomHbondForce.getCutoffDistance() returns unit.nanometers CustomManyParticleForce.getCutoffDistance() returns unit.nanometers CustomNonbondedForce.getCutoffDistance() returns unit.nanometers CustomNonbondedForce.getSwitchingDistance() returns unit.nanometers DrudeForce.getParticleParameters() returns particle as None DrudeForce.getParticleParameters() returns particle1 as None DrudeForce.getParticleParameters() returns particle2 as None DrudeForce.getParticleParameters() returns particle3 as None DrudeForce.getParticleParameters() returns particle4 as None DrudeForce.getParticleParameters() returns charge as unit.elementary_charge DrudeForce.getParticleParameters() returns polarizability as unit.nanometer**3 DrudeForce.getParticleParameters() returns aniso12 as None DrudeForce.getParticleParameters() returns aniso34 as None DrudeIntegrator.getDrudeTemperature() returns unit.kelvin DrudeIntegrator.getMaxDrudeDistance() returns unit.nanometer DrudeLangevinIntegrator.getTemperature() returns unit.kelvin DrudeLangevinIntegrator.getFriction() returns unit.picosecond**-1 DrudeLangevinIntegrator.getDrudeFriction() returns unit.picosecond**-1 NoseHooverIntegrator.getTemperature() returns unit.kelvin NoseHooverIntegrator.getRelativeTemperature() returns unit.kelvin NoseHooverIntegrator.getCollisionFrequency() returns unit.picosecond**-1 NoseHooverIntegrator.getRelativeCollisionFrequency() returns unit.picosecond**-1 NoseHooverIntegrator.computeHeatBathEnergy() returns unit.kilojoules_per_mole NoseHooverIntegrator.getMaximumPairDistance() returns unit.nanometer DrudeNoseHooverIntegrator.getMaxDrudeDistance() returns unit.nanometer DrudeNoseHooverIntegrator.getVelocitiesForTemperature() returns unit.nanometers / unit.picosecond DrudeSCFIntegrator.getMinimizationErrorTolerance() returns unit.kilojoules_per_mole/unit.nanometer GayBerneForce.getCutoffDistance() returns unit.nanometers GayBerneForce.getSwitchingDistance() returns unit.nanometers GayBerneForce.getParticleParameters() returns sigma as unit.nanometer GayBerneForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole GayBerneForce.getParticleParameters() returns xparticle as None GayBerneForce.getParticleParameters() returns yparticle as None GayBerneForce.getParticleParameters() returns sx as unit.nanometer GayBerneForce.getParticleParameters() returns sy as unit.nanometer GayBerneForce.getParticleParameters() returns sz as unit.nanometer GayBerneForce.getParticleParameters() returns ex as None GayBerneForce.getParticleParameters() returns ey as None GayBerneForce.getParticleParameters() returns ez as None GBSAOBCForce.getParticleParameters() returns charge as unit.elementary_charge GBSAOBCForce.getParticleParameters() returns radius as unit.nanometer GBSAOBCForce.getParticleParameters() returns scalingFactor as None GBSAOBCForce.getSurfaceAreaEnergy() returns unit.kilojoule_per_mole/unit.nanometer/unit.nanometer GBSAOBCForce.getCutoffDistance() returns unit.nanometers HarmonicAngleForce.getAngleParameters() returns particle1 as None HarmonicAngleForce.getAngleParameters() returns particle2 as None HarmonicAngleForce.getAngleParameters() returns particle3 as None HarmonicAngleForce.getAngleParameters() returns angle as unit.radian HarmonicAngleForce.getAngleParameters() returns k as unit.kilojoule_per_mole/(unit.radian*unit.radian) HarmonicBondForce.getBondParameters() returns particle1 as None HarmonicBondForce.getBondParameters() returns particle2 as None HarmonicBondForce.getBondParameters() returns length as unit.nanometer HarmonicBondForce.getBondParameters() returns k as unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer) HippoNonbondedForce.getCutoffDistance() returns unit.nanometers HippoNonbondedForce.getSwitchingDistance() returns unit.nanometers HippoNonbondedForce.getParticleParameters() returns charge as unit.elementary_charge HippoNonbondedForce.getParticleParameters() returns dipole as unit.elementary_charge*unit.nanometer HippoNonbondedForce.getParticleParameters() returns quadrupole as unit.elementary_charge*unit.nanometer**2 HippoNonbondedForce.getParticleParameters() returns coreCharge as unit.elementary_charge HippoNonbondedForce.getParticleParameters() returns alpha as None HippoNonbondedForce.getParticleParameters() returns epsilon as None HippoNonbondedForce.getParticleParameters() returns damping as None HippoNonbondedForce.getParticleParameters() returns c6 as None HippoNonbondedForce.getParticleParameters() returns pauliK as None HippoNonbondedForce.getParticleParameters() returns pauliQ as None HippoNonbondedForce.getParticleParameters() returns pauliAlpha as None HippoNonbondedForce.getParticleParameters() returns polarizability as None HippoNonbondedForce.getParticleParameters() returns axisType as None HippoNonbondedForce.getParticleParameters() returns multipoleAtomZ as None HippoNonbondedForce.getParticleParameters() returns multipoleAtomX as None HippoNonbondedForce.getParticleParameters() returns multipoleAtomY as None LangevinIntegrator.getTemperature() returns unit.kelvin LangevinIntegrator.getFriction() returns unit.picosecond**-1 LangevinMiddleIntegrator.getTemperature() returns unit.kelvin LangevinMiddleIntegrator.getFriction() returns unit.picosecond**-1 LocalCoordinatesSite.getLocalPosition() returns unit.nanometer MonteCarloAnisotropicBarostat.getDefaultPressure() returns unit.bar MonteCarloAnisotropicBarostat.getDefaultTemperature() returns unit.kelvin MonteCarloBarostat.getDefaultPressure() returns unit.bar MonteCarloBarostat.getDefaultTemperature() returns unit.kelvin MonteCarloFlexibleBarostat.getDefaultPressure() returns unit.bar MonteCarloFlexibleBarostat.getDefaultTemperature() returns unit.kelvin MonteCarloMembraneBarostat.getDefaultPressure() returns unit.bar MonteCarloMembraneBarostat.getDefaultSurfaceTension() returns unit.bar*unit.nanometer MonteCarloMembraneBarostat.getDefaultTemperature() returns unit.kelvin NonbondedForce.getCutoffDistance() returns unit.nanometers NonbondedForce.getSwitchingDistance() returns unit.nanometers NonbondedForce.getPMEParameters() returns alpha as unit.nanometer**-1 NonbondedForce.getPMEParameters() returns nx as None NonbondedForce.getPMEParameters() returns ny as None NonbondedForce.getPMEParameters() returns nz as None NonbondedForce.getParticleParameters() returns charge as unit.elementary_charge NonbondedForce.getParticleParameters() returns sigma as unit.nanometer NonbondedForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole NonbondedForce.getExceptionParameters() returns particle1 as None NonbondedForce.getExceptionParameters() returns particle2 as None NonbondedForce.getExceptionParameters() returns chargeProd as unit.elementary_charge*unit.elementary_charge NonbondedForce.getExceptionParameters() returns sigma as unit.nanometer NonbondedForce.getExceptionParameters() returns epsilon as unit.kilojoule_per_mole NoseHooverChain.getTemperature() returns unit.kelvin NoseHooverChain.getRelativeTemperature() returns unit.kelvin NoseHooverChain.getCollisionFrequency() returns unit.picosecond**-1 NoseHooverChain.getRelativeCollisionFrequency() returns unit.picosecond**-1 PeriodicTorsionForce.getTorsionParameters() returns particle1 as None PeriodicTorsionForce.getTorsionParameters() returns particle2 as None PeriodicTorsionForce.getTorsionParameters() returns particle3 as None PeriodicTorsionForce.getTorsionParameters() returns particle4 as None PeriodicTorsionForce.getTorsionParameters() returns periodicity as None PeriodicTorsionForce.getTorsionParameters() returns phase as unit.radian PeriodicTorsionForce.getTorsionParameters() returns k as unit.kilojoule_per_mole RBTorsionForce.getTorsionParameters() returns particle1 as None RBTorsionForce.getTorsionParameters() returns particle2 as None RBTorsionForce.getTorsionParameters() returns particle3 as None RBTorsionForce.getTorsionParameters() returns particle4 as None RBTorsionForce.getTorsionParameters() returns c0 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c1 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c2 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c3 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c4 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c5 as unit.kilojoules_per_mole RMSDForce.getReferencePositions() returns unit.nanometer RPMDIntegrator.getTemperature() returns unit.kelvin RPMDIntegrator.getFriction() returns unit.picosecond**-1 RPMDIntegrator.getTotalEnergy() returns unit.kilojoules_per_mole RPMDMonteCarloBarostat.getDefaultPressure() returns unit.bar State.getTime() returns unit.picosecond State.getKineticEnergy() returns unit.kilojoules_per_mole State.getPotentialEnergy() returns unit.kilojoules_per_mole State.getPeriodicBoxVectors() returns unit.nanometers State.getPeriodicBoxVolume() returns unit.nanometers**3 System.getParticleMass() returns unit.amu System.getConstraintParameters() returns particle1 as None System.getConstraintParameters() returns particle2 as None System.getConstraintParameters() returns distance as unit.nanometer System.getDefaultPeriodicBoxVectors() returns a as unit.nanometer System.getDefaultPeriodicBoxVectors() returns b as unit.nanometer System.getDefaultPeriodicBoxVectors() returns c as unit.nanometer VariableLangevinIntegrator.getTemperature() returns unit.kelvin VariableLangevinIntegrator.getFriction() returns unit.picosecond**-1 VariableLangevinIntegrator.getMaximumStepSize() returns unit.picosecond VariableVerletIntegrator.getMaximumStepSize() returns unit.picosecond [ 40%] Creating OpenMM Python module sources with swig... cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/src/swig_doxygen && /usr/bin/swig -python -c++ -outdir /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/openmm -o OpenMMSwig.cxx OpenMM.i [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/CustomTorsionForceImpl.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/Force.cpp OpenMMSwigHeaders.i:649: Warning 314: 'None' is a python keyword, renaming to '_None' [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/ForceImpl.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/GBSAOBCForce.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/GBSAOBCForceImpl.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/GayBerneForce.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/GayBerneForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/GayBerneForceImpl.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/HarmonicAngleForce.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicAngleForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/HarmonicAngleForceImpl.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/HarmonicBondForce.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/HarmonicBondForceImpl.cpp OpenMMSwigHeaders.i:475: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:586: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:589: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:592: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:598: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:603: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:719: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:737: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:835: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/LangevinIntegrator.cpp.o [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Integrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/LangevinIntegrator.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/LangevinIntegrator.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/LangevinIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/LangevinIntegrator.cpp /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/Integrator.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/Integrator.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/Integrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/Integrator.cpp OpenMMSwigHeaders.i:1012: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1048: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/LangevinMiddleIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/LangevinMiddleIntegrator.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/LangevinMiddleIntegrator.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/LangevinMiddleIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/LangevinMiddleIntegrator.cpp OpenMMSwigHeaders.i:1098: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1151: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/LocalEnergyMinimizer.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/LocalEnergyMinimizer.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/LocalEnergyMinimizer.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/LocalEnergyMinimizer.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/LocalEnergyMinimizer.cpp OpenMMSwigHeaders.i:1184: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1189: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1192: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostat.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostat.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostat.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/MonteCarloAnisotropicBarostat.cpp OpenMMSwigHeaders.i:1222: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostatImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostatImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostatImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloAnisotropicBarostatImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/MonteCarloAnisotropicBarostatImpl.cpp OpenMMSwigHeaders.i:1310: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1396: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1431: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1434: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. ./swig_lib/python/extend.i:414: Warning 509: Overloaded method OpenMM::CustomIntegrator::getPerDofVariable(int) const effectively ignored, OpenMMSwigHeaders.i:1432: Warning 509: as it is shadowed by OpenMM::CustomIntegrator::getPerDofVariable(int,std::vector< Vec3,std::allocator< Vec3 > > &) const. OpenMMSwigHeaders.i:1526: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1609: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1648: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1737: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1799: Warning 453: Can't apply (ContextImpl &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1872: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1908: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1932: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1955: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2083: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2086: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostat.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostat.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostat.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/MonteCarloBarostat.cpp OpenMMSwigHeaders.i:2089: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostatImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostatImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostatImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloBarostatImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/MonteCarloBarostatImpl.cpp OpenMMSwigHeaders.i:2372: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2437: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2466: Warning 453: Can't apply (ContextImpl &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2467: Warning 453: Can't apply (ContextImpl &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2502: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2517: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2608: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2609: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2610: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2630: Warning 453: Can't apply (OpenMM::SerializationNode &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2664: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2665: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2666: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloFlexibleBarostat.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include 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/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/MonteCarloFlexibleBarostat.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloFlexibleBarostatImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloFlexibleBarostatImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloFlexibleBarostatImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloFlexibleBarostatImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/MonteCarloFlexibleBarostatImpl.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 42%] Built target BuildModule [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostat.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostat.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostat.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/MonteCarloMembraneBarostat.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/MonteCarloMembraneBarostatImpl.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/NonbondedForce.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/NonbondedForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/NonbondedForceImpl.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverChain.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverChain.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverChain.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverChain.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/NoseHooverChain.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 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-I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverIntegrator.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverIntegrator.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/NoseHooverIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/NoseHooverIntegrator.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/OSRngSeed.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 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-I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/OSRngSeed.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/OSRngSeed.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/OSRngSeed.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/OSRngSeed.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/PeriodicTorsionForce.cpp.o /usr/bin/c++ 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/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/PeriodicTorsionForceImpl.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include 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-I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/VectorExpression.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/VectorExpression.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/VectorExpression.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/VectorExpression.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VerletIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/VerletIntegrator.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/VerletIntegrator.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/VerletIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/VerletIntegrator.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VirtualSite.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/VirtualSite.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/VirtualSite.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/VirtualSite.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/src/VirtualSite.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o -MF CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o.d -o CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/src/Kernel.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o -MF CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/src/KernelImpl.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/Platform.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/olla/src/Platform.cpp.o -MF CMakeFiles/OpenMM.dir/olla/src/Platform.cpp.o.d -o CMakeFiles/OpenMM.dir/olla/src/Platform.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/src/Platform.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/src/quern.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern_factorization.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/quern/src/quern_factorization.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/quern/src/quern_factorization.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern_factorization.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/src/quern_factorization.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern_order.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM 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-I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/quern/src/quern_order.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/quern/src/quern_order.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern_order.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/src/quern_order.cpp [ 46%] Building CXX object 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/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/src/quern_solver.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/CompiledExpression.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include 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CMakeFiles/OpenMM.dir/libraries/lepton/src/CompiledExpression.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/src/CompiledExpression.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionProgram.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include 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CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionProgram.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionProgram.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionProgram.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/src/ExpressionProgram.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionTreeNode.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionTreeNode.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionTreeNode.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ExpressionTreeNode.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/src/ExpressionTreeNode.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/Operation.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/lepton/src/Operation.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/lepton/src/Operation.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/lepton/src/Operation.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/src/Operation.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include 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-ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/src/ParsedExpression.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/src/Parser.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DHAVE_SSE2=1 -MD -MT CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/src/SFMT.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/src/lbfgs.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/libraries/hilbert/src/hilbert.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/src/SHA1.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernelFactory.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ObcParameters.cpp.o -MF CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ObcParameters.cpp.o.d -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ObcParameters.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference/ObcParameters.cpp [ 48%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ReferenceAndersenThermostat.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/SimTKOpenMMUtilities.cpp.o -MF CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/SimTKOpenMMUtilities.cpp.o.d -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/SimTKOpenMMUtilities.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference/SimTKOpenMMUtilities.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/fftpack.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit 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-I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/CMMotionRemoverProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/CMMotionRemoverProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/CMMotionRemoverProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/CMMotionRemoverProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CompoundIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/CompoundIntegratorProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/CompoundIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/CompoundIntegratorProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/CompoundIntegratorProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomAngleForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/CustomAngleForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/CustomAngleForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/CustomAngleForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/CustomAngleForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomBondForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/CustomBondForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/CustomBondForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/CustomBondForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/CustomBondForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomCVForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM 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-I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/CustomCVForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/CustomCVForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/CustomCVForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/CustomCVForceProxy.cpp [ 55%] Building 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CMakeFiles/OpenMM.dir/serialization/src/CustomCompoundBondForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/CustomCompoundBondForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomCentroidBondForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include 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-DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/CustomCentroidBondForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/CustomCentroidBondForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/CustomCentroidBondForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/CustomCentroidBondForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomExternalForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include 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-D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/CustomExternalForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/CustomExternalForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/CustomExternalForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/CustomExternalForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomGBForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/CustomHbondForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/CustomHbondForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/CustomHbondForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/CustomHbondForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 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-I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/CustomIntegratorProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/CustomIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/CustomIntegratorProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/CustomIntegratorProxy.cpp [ 55%] Building CXX object 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-DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/CustomTorsionForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/CustomTorsionForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/CustomTorsionForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/CustomTorsionForceProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/GBSAOBCForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/GBSAOBCForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/GBSAOBCForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/GBSAOBCForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/GBSAOBCForceProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/GayBerneForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/GayBerneForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/GayBerneForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/GayBerneForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/GayBerneForceProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/HarmonicAngleForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/HarmonicAngleForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/HarmonicAngleForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/HarmonicAngleForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/HarmonicAngleForceProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/HarmonicBondForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 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[ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/LangevinIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/MonteCarloBarostatProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/MonteCarloBarostatProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/MonteCarloBarostatProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/MonteCarloBarostatProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/MonteCarloFlexibleBarostatProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src 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/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/MonteCarloMembraneBarostatProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/NonbondedForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include 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CMakeFiles/OpenMM.dir/serialization/src/NonbondedForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/NonbondedForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/NonbondedForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/NonbondedForceProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/NoseHooverIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include 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-DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/NoseHooverIntegratorProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/NoseHooverIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/NoseHooverIntegratorProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/NoseHooverIntegratorProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/PeriodicTorsionForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/RBTorsionForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/RBTorsionForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/RBTorsionForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/RBTorsionForceProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/RMSDForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS 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-I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/RMSDForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/RMSDForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/RMSDForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/RMSDForceProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/SerializationNode.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/StateProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/StateProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/StateProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/StateProxy.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/TabulatedFunctionProxies.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/TabulatedFunctionProxies.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/TabulatedFunctionProxies.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/TabulatedFunctionProxies.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/TabulatedFunctionProxies.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/VariableLangevinIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/VariableLangevinIntegratorProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/VariableLangevinIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/VariableLangevinIntegratorProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/VariableLangevinIntegratorProxy.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/VariableVerletIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/VariableVerletIntegratorProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/VariableVerletIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/VariableVerletIntegratorProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/VariableVerletIntegratorProxy.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/VerletIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/VerletIntegratorProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/VerletIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/VerletIntegratorProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/VerletIntegratorProxy.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/XmlSerializer.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/XmlSerializer.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/XmlSerializer.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/XmlSerializer.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/XmlSerializer.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/dtoa.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/dtoa.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/dtoa.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/dtoa.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/dtoa.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/g_fmt.cpp.o /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/dtoa.cpp: In function ‘double strtod2(const char*, char**)’: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/dtoa.cpp:2650:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2650 | if (match(&s,"nf")) { | ^~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/dtoa.cpp:2652:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2652 | if (!match(&s,"inity")) | ^~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/dtoa.cpp:2661:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2661 | if (match(&s, "an")) { | ^~~~ /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/g_fmt.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/g_fmt.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/g_fmt.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/g_fmt.cpp /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/dtoa.cpp: In function ‘char* dtoa(double, int, int, int*, int*, char**)’: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/dtoa.cpp:3725:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 3725 | return nrv_alloc("Infinity", rve, 8); | ^~~~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/dtoa.cpp:3727:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 3727 | return nrv_alloc("NaN", rve, 3); | ^~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/src/dtoa.cpp:3735:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 3735 | return nrv_alloc("0", rve, 1); | ^~~ [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/irrxml/src/irrXML.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include 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CMakeFiles/OpenMM.dir/libraries/asmjit/base/assembler.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/asmjit/base/assembler.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/assembler.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit/base/assembler.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/codebuilder.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMM_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include 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-I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 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-I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/asmjit/base/inst.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/asmjit/base/inst.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/inst.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit/base/inst.cpp [ 61%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/osutils.cpp.o [ 61%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/operand.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 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-I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o -MF CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o.d -o CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCMAPTorsionForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/build make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -MF CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o.d -o CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCMMotionRemover.cpp make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/DependInfo.cmake --color= [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o -MF CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o.d -o CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCustomBondForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/build [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -MF CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o.d -o CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceBrownianIntegrator.cpp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o -MF CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o.d -o CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCompoundIntegrator.cpp [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o -MF CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o.d -o CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceAndersenThermostat.cpp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o -MF CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o.d -o CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCheckpoints.cpp [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o -MF CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o.d -o CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCustomCVForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o -MF CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o.d -o CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCustomAngleForce.cpp [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o -MF CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o.d -o CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCustomCentroidBondForce.cpp [ 63%] Linking CXX executable ../../../TestReferenceCMMotionRemover cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCMMotionRemover.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -o ../../../TestReferenceCMMotionRemover -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 63%] Linking CXX executable ../../../TestReferenceCheckpoints cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCheckpoints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o -o ../../../TestReferenceCheckpoints -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target TestReferenceCMMotionRemover make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o -MF CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o.d -o CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCustomCompoundBondForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target TestReferenceCheckpoints make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o -MF CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o.d -o CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCustomExternalForce.cpp [ 63%] Linking CXX executable ../../../TestReferenceAndersenThermostat cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAndersenThermostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o -o ../../../TestReferenceAndersenThermostat -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target TestReferenceAndersenThermostat make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -MF CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o.d -o CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCustomGBForce.cpp [ 63%] Linking CXX executable ../../../TestReferenceBrownianIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceBrownianIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -o ../../../TestReferenceBrownianIntegrator -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target TestReferenceBrownianIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o -MF CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o.d -o CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCustomHbondForce.cpp [ 65%] Linking CXX executable ../../../TestReferenceCMAPTorsionForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCMAPTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o -o ../../../TestReferenceCMAPTorsionForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceCMAPTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o -MF CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o.d -o CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCustomIntegrator.cpp [ 65%] Linking CXX executable ../../../TestReferenceCustomCVForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCVForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o -o ../../../TestReferenceCustomCVForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceCustomCVForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Linking CXX executable ../../../TestReferenceCustomExternalForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomExternalForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o -o ../../../TestReferenceCustomExternalForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o -MF CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o.d -o CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCustomManyParticleForce.cpp [ 68%] Linking CXX executable ../../../TestReferenceCompoundIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCompoundIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o -o ../../../TestReferenceCompoundIntegrator -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 68%] Linking CXX executable ../../../TestReferenceCustomBondForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o -o ../../../TestReferenceCustomBondForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCustomExternalForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCompoundIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/DependInfo.cmake --color= [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -MF CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o.d -o CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCustomNonbondedForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o -MF CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o.d -o CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceCustomTorsionForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCustomBondForce make -f platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Linking CXX executable ../../../TestReferenceCustomAngleForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o -o ../../../TestReferenceCustomAngleForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o -MF CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o.d -o CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceDispersionPME.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCustomAngleForce make -f platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o -MF CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o.d -o CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceEwald.cpp [ 68%] Linking CXX executable ../../../TestReferenceCustomHbondForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomHbondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o -o ../../../TestReferenceCustomHbondForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCustomHbondForce make -f platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o -MF CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o.d -o CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceGBSAOBCForce.cpp [ 68%] Linking CXX executable ../../../TestReferenceCustomCompoundBondForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCompoundBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o -o ../../../TestReferenceCustomCompoundBondForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCustomCompoundBondForce make -f platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o -MF CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o.d -o CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceGayBerneForce.cpp [ 68%] Linking CXX executable ../../../TestReferenceCustomTorsionForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o -o ../../../TestReferenceCustomTorsionForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCustomTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -MF CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o.d -o CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceHarmonicAngleForce.cpp [ 68%] Linking CXX executable ../../../TestReferenceCustomCentroidBondForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCentroidBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o -o ../../../TestReferenceCustomCentroidBondForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCustomCentroidBondForce make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o -MF CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o.d -o CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceHarmonicBondForce.cpp [ 68%] Linking CXX executable ../../../TestReferenceGBSAOBCForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceGBSAOBCForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o -o ../../../TestReferenceGBSAOBCForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceGBSAOBCForce make -f platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o -MF CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o.d -o CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceKineticEnergy.cpp [ 70%] Linking CXX executable ../../../TestReferenceCustomGBForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomGBForce.dir/link.txt --verbose=1 [ 70%] Linking CXX executable ../../../TestReferenceHarmonicAngleForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHarmonicAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -o ../../../TestReferenceCustomGBForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -o ../../../TestReferenceHarmonicAngleForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceHarmonicAngleForce make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceCustomGBForce make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/depend make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o -MF CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o.d -o CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceLangevinIntegrator.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o -MF CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o.d -o CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceLangevinMiddleIntegrator.cpp [ 70%] Linking CXX executable ../../../TestReferenceGayBerneForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceGayBerneForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o -o ../../../TestReferenceGayBerneForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 70%] Linking CXX executable ../../../TestReferenceHarmonicBondForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHarmonicBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o -o ../../../TestReferenceHarmonicBondForce -Wl,-rpath,"\$ORIGIN:" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceGayBerneForce make -f platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/build make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceHarmonicBondForce make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o -MF CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o.d -o CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceMonteCarloAnisotropicBarostat.cpp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o -MF CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o.d -o CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceLocalEnergyMinimizer.cpp [ 70%] Linking CXX executable ../../../TestReferenceCustomManyParticleForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomManyParticleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o -o ../../../TestReferenceCustomManyParticleForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 70%] Linking CXX executable ../../../TestReferenceKineticEnergy cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceKineticEnergy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o -o ../../../TestReferenceKineticEnergy -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceCustomManyParticleForce make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o -MF CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o.d -o CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceMonteCarloBarostat.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceKineticEnergy make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloFlexibleBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloFlexibleBarostat.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloFlexibleBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloFlexibleBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloFlexibleBarostat.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloFlexibleBarostat.dir/TestReferenceMonteCarloFlexibleBarostat.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloFlexibleBarostat.dir/TestReferenceMonteCarloFlexibleBarostat.cpp.o -MF CMakeFiles/TestReferenceMonteCarloFlexibleBarostat.dir/TestReferenceMonteCarloFlexibleBarostat.cpp.o.d -o CMakeFiles/TestReferenceMonteCarloFlexibleBarostat.dir/TestReferenceMonteCarloFlexibleBarostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceMonteCarloFlexibleBarostat.cpp [ 70%] Linking CXX executable ../../../TestReferenceLangevinIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLangevinIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o -o ../../../TestReferenceLangevinIntegrator -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceLangevinIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o -MF CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o.d -o CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceMonteCarloMembraneBarostat.cpp [ 70%] Linking CXX executable ../../../TestReferenceLocalEnergyMinimizer cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o -o ../../../TestReferenceLocalEnergyMinimizer -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceLocalEnergyMinimizer make -f platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o -MF CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o.d -o CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceNeighborList.cpp [ 70%] Linking CXX executable ../../../TestReferenceCustomIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o -o ../../../TestReferenceCustomIntegrator -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceCustomIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/DependInfo.cmake --color= [ 70%] Linking CXX executable ../../../TestReferenceMonteCarloFlexibleBarostat cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloFlexibleBarostat.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloFlexibleBarostat.dir/TestReferenceMonteCarloFlexibleBarostat.cpp.o -o ../../../TestReferenceMonteCarloFlexibleBarostat -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o -MF CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o.d -o CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceNonbondedForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceMonteCarloFlexibleBarostat make -f platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -MF CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o.d -o CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceNoseHooverIntegrator.cpp [ 72%] Linking CXX executable ../../../TestReferenceMonteCarloAnisotropicBarostat cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o -o ../../../TestReferenceMonteCarloAnisotropicBarostat -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 72%] Linking CXX executable ../../../TestReferenceNeighborList cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNeighborList.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o -o ../../../TestReferenceNeighborList -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 72%] Linking CXX executable ../../../TestReferenceLangevinMiddleIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o -o ../../../TestReferenceLangevinMiddleIntegrator -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceMonteCarloAnisotropicBarostat make -f platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceNeighborList make -f platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/DependInfo.cmake --color= [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o -MF CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o.d -o CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferencePeriodicTorsionForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -MF CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o.d -o CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceRBTorsionForce.cpp [ 72%] Linking CXX executable ../../../TestReferenceMonteCarloBarostat [ 72%] Built target TestReferenceLangevinMiddleIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloBarostat.dir/link.txt --verbose=1 make -f platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o -o ../../../TestReferenceMonteCarloBarostat -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o -MF CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o.d -o CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceRMSDForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceMonteCarloBarostat make -f platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Linking CXX executable ../../../TestReferenceMonteCarloMembraneBarostat cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/link.txt --verbose=1 [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o -MF CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o.d -o CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceRandom.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o -o ../../../TestReferenceMonteCarloMembraneBarostat -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceMonteCarloMembraneBarostat make -f platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o -MF CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o.d -o CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceSettle.cpp [ 72%] Linking CXX executable ../../../TestReferenceRandom cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRandom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRandom.dir/TestReferenceRandom.cpp.o -o ../../../TestReferenceRandom -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceRandom make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o -MF CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o.d -o CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceVariableLangevinIntegrator.cpp [ 72%] Linking CXX executable ../../../TestReferenceDispersionPME cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDispersionPME.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o -o ../../../TestReferenceDispersionPME -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceDispersionPME make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o -MF CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o.d -o CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceVariableVerletIntegrator.cpp [ 72%] Linking CXX executable ../../../TestReferenceSettle cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceSettle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o -o ../../../TestReferenceSettle -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceSettle make -f platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o -MF CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o.d -o CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceVerletIntegrator.cpp [ 72%] Linking CXX executable ../../../TestReferenceCustomNonbondedForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomNonbondedForce.dir/link.txt --verbose=1 [ 72%] Linking CXX executable ../../../TestReferenceRMSDForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRMSDForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -o ../../../TestReferenceCustomNonbondedForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o -o ../../../TestReferenceRMSDForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Linking CXX executable ../../../TestReferenceRBTorsionForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRBTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -o ../../../TestReferenceRBTorsionForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 72%] Built target TestReferenceRMSDForce make -f platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o -MF CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o.d -o CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests/TestReferenceVirtualSites.cpp [ 72%] Linking CXX executable ../../../TestReferencePeriodicTorsionForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferencePeriodicTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o -o ../../../TestReferencePeriodicTorsionForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceCustomNonbondedForce make -f platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/build.make platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/sharedTarget /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/build.make platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuBondForce.cpp [ 72%] Built target TestReferenceRBTorsionForce make -f plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build.make plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build.make plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target TestReferencePeriodicTorsionForce make -f plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/build.make plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/build.make plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMRPMD_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o -MF CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o.d -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/src/RPMDIntegrator.cpp [ 72%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp [ 72%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuCustomGBForce.cpp [ 72%] Linking CXX executable ../../../TestReferenceNoseHooverIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNoseHooverIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -o ../../../TestReferenceNoseHooverIntegrator -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o [ 72%] Built target TestReferenceNoseHooverIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaMultipoleForce.cpp make -f plugins/drude/CMakeFiles/OpenMMDrude.dir/build.make plugins/drude/CMakeFiles/OpenMMDrude.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/CMakeFiles/OpenMMDrude.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/CMakeFiles/OpenMMDrude.dir/build.make plugins/drude/CMakeFiles/OpenMMDrude.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrude_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/src/DrudeForce.cpp [ 74%] Linking CXX executable ../../../TestReferenceVariableLangevinIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o -o ../../../TestReferenceVariableLangevinIntegrator -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Built target TestReferenceVariableLangevinIntegrator make -f serialization/tests/CMakeFiles/TestSerializationNode.dir/build.make serialization/tests/CMakeFiles/TestSerializationNode.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializationNode.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializationNode.dir/build.make serialization/tests/CMakeFiles/TestSerializationNode.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Building CXX object serialization/tests/CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o -MF CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o.d -o CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializationNode.cpp [ 74%] Linking CXX executable ../../../TestReferenceVerletIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVerletIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o -o ../../../TestReferenceVerletIntegrator -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 74%] Linking CXX executable ../../../TestReferenceNonbondedForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o -o ../../../TestReferenceNonbondedForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Built target TestReferenceVerletIntegrator [ 74%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrude_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/src/DrudeForceImpl.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Built target TestReferenceNonbondedForce [ 74%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrude_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/src/DrudeHelpers.cpp [ 74%] Linking CXX executable ../../../TestReferenceVariableVerletIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVariableVerletIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o -o ../../../TestReferenceVariableVerletIntegrator -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Built target TestReferenceVariableVerletIntegrator [ 74%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMRPMD_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o -MF CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o.d -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/src/RPMDMonteCarloBarostat.cpp [ 74%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrude_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/src/DrudeIntegrator.cpp make -f serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Building CXX object serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o -MF CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o.d -o CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeAndersenThermostat.cpp [ 74%] Linking CXX executable ../../../TestReferenceEwald cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceEwald.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o -o ../../../TestReferenceEwald -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make -f serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/depend [ 74%] Linking CXX executable ../../TestSerializationNode cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializationNode.dir/link.txt --verbose=1 make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/DependInfo.cmake --color= [ 74%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMRPMD_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o -MF CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o.d -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o -o ../../TestSerializationNode -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaMultipoleForceImpl.cpp [ 74%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o -MF CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o.d -o CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCMAPTorsion.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Built target TestSerializationNode make -f serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/DependInfo.cmake --color= [ 74%] Built target TestReferenceEwald make -f serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/depend make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/DependInfo.cmake --color= [ 74%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o -MF CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o.d -o CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCMMotionRemover.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o -MF CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o.d -o CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCustomAngleForce.cpp make -f serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o -MF CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o.d -o CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCustomBondForce.cpp [ 74%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrude_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/src/DrudeLangevinIntegrator.cpp [ 74%] Linking CXX executable ../../TestSerializeCMMotionRemover cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCMMotionRemover.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o -o ../../TestSerializeCMMotionRemover -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Linking CXX executable ../../TestSerializeAndersenThermostat cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeAndersenThermostat.dir/link.txt --verbose=1 [ 74%] Built target TestSerializeCMMotionRemover /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o -o ../../TestSerializeAndersenThermostat -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 74%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrude_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/src/DrudeNoseHooverIntegrator.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Built target TestSerializeAndersenThermostat [ 74%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrude_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/src/DrudeSCFIntegrator.cpp [ 74%] Linking CXX executable ../../../TestReferenceVirtualSites cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVirtualSites.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o -o ../../../TestReferenceVirtualSites -Wl,-rpath,"\$ORIGIN" ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Linking CXX executable ../../TestSerializeCustomBondForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomBondForce.dir/link.txt --verbose=1 [ 74%] Built target TestReferenceVirtualSites make -f serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/depend /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o -o ../../TestSerializeCustomBondForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -MF CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o.d -o CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCustomCVForce.cpp [ 74%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Linking CXX executable ../../TestSerializeCMAPTorsion cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCMAPTorsion.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o -o ../../TestSerializeCMAPTorsion -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 74%] Built target TestSerializeCustomBondForce [ 74%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrude_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o -MF CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/src/DrudeForceProxy.cpp [ 74%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrude_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o -MF CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/src/DrudeLangevinIntegratorProxy.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 74%] Built target TestSerializeCMAPTorsion make -f serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Linking CXX executable ../../TestSerializeCustomAngleForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomAngleForce.dir/link.txt --verbose=1 [ 76%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o -MF CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o.d -o CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCustomCentroidBondForce.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o -o ../../TestSerializeCustomAngleForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 76%] Linking CXX shared library ../../libOpenMMRPMD.so cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMRPMD.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMRPMD.so -o ../../libOpenMMRPMD.so CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o -Wl,-rpath,"\$ORIGIN:" /usr/lib/x86_64-linux-gnu/libdl.so ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target TestSerializeCustomAngleForce make -f serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/DependInfo.cmake --color= [ 76%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrude_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o -MF CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/src/DrudeNoseHooverIntegratorProxy.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o -MF CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o.d -o CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCustomCompoundBondForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target OpenMMRPMD make -f serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -MF CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o.d -o CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCustomExternalForce.cpp [ 76%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrude_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -MF CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/src/DrudeSerializationProxyRegistration.cpp [ 76%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuCustomManyParticleForce.cpp [ 76%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuCustomNonbondedForce.cpp [ 76%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuGBSAOBCForce.cpp [ 76%] Linking CXX shared library ../../libOpenMMDrude.so cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMDrude.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMDrude.so -o ../../libOpenMMDrude.so CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -Wl,-rpath,"\$ORIGIN:" /usr/lib/x86_64-linux-gnu/libdl.so ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 76%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target OpenMMDrude make -f serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o -MF CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o.d -o CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCustomGBForce.cpp [ 76%] Linking CXX executable ../../TestSerializeCustomExternalForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomExternalForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -o ../../TestSerializeCustomExternalForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 76%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuGayBerneForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target TestSerializeCustomExternalForce make -f serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o -MF CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o.d -o CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCustomHbondForce.cpp [ 76%] Linking CXX executable ../../TestSerializeCustomCVForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCVForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -o ../../TestSerializeCustomCVForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target TestSerializeCustomCVForce [ 76%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuKernelFactory.cpp [ 76%] Linking CXX executable ../../TestSerializeCustomGBForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomGBForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o -o ../../TestSerializeCustomGBForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 76%] Linking CXX executable ../../TestSerializeCustomCompoundBondForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCompoundBondForce.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target TestSerializeCustomGBForce make -f serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/depend /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o -o ../../TestSerializeCustomCompoundBondForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/DependInfo.cmake --color= [ 76%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaVdwForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o -MF CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o.d -o CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCustomManyParticleForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target TestSerializeCustomCompoundBondForce make -f serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o -MF CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o.d -o CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCustomNonbondedForce.cpp [ 76%] Linking CXX executable ../../TestSerializeCustomCentroidBondForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCentroidBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o -o ../../TestSerializeCustomCentroidBondForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target TestSerializeCustomCentroidBondForce make -f serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o -MF CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o.d -o CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeCustomTorsionForce.cpp [ 76%] Linking CXX executable ../../TestSerializeCustomHbondForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomHbondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o -o ../../TestSerializeCustomHbondForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 76%] Linking CXX executable ../../TestSerializeCustomManyParticleForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomManyParticleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o -o ../../TestSerializeCustomManyParticleForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target TestSerializeCustomHbondForce make -f serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o -MF CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o.d -o CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeGBSAOBCForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target TestSerializeCustomManyParticleForce make -f serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/DependInfo.cmake --color= [ 76%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaVdwForceImpl.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o -MF CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o.d -o CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeGayBerneForce.cpp [ 78%] Linking CXX executable ../../TestSerializeCustomNonbondedForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o -o ../../TestSerializeCustomNonbondedForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 78%] Linking CXX executable ../../TestSerializeCustomTorsionForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o -o ../../TestSerializeCustomTorsionForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Built target TestSerializeCustomNonbondedForce make -f serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Building CXX object serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o -MF CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o.d -o CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeHarmonicAngleForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Built target TestSerializeCustomTorsionForce make -f serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Building CXX object serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o -MF CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o.d -o CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeHarmonicBondForce.cpp [ 78%] Linking CXX executable ../../TestSerializeGBSAOBCForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeGBSAOBCForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o -o ../../TestSerializeGBSAOBCForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Built target TestSerializeGBSAOBCForce [ 78%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuKernels.cpp [ 78%] Linking CXX executable ../../TestSerializeHarmonicAngleForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeHarmonicAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o -o ../../TestSerializeHarmonicAngleForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 78%] Linking CXX executable ../../TestSerializeGayBerneForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeGayBerneForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o -o ../../TestSerializeGayBerneForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Built target TestSerializeHarmonicAngleForce [ 78%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuLangevinDynamics.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Built target TestSerializeGayBerneForce make -f serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Building CXX object serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o -MF CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o.d -o CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeIntegrator.cpp [ 78%] Linking CXX executable ../../TestSerializeHarmonicBondForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeHarmonicBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o -o ../../TestSerializeHarmonicBondForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Built target TestSerializeHarmonicBondForce make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o -MF CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o.d -o CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeMonteCarloAnisotropicBarostat.cpp [ 78%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForce.cpp [ 78%] Linking CXX executable ../../TestSerializeMonteCarloAnisotropicBarostat cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o -o ../../TestSerializeMonteCarloAnisotropicBarostat -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 78%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuLangevinMiddleDynamics.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Built target TestSerializeMonteCarloAnisotropicBarostat make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -MF CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o.d -o CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeMonteCarloBarostat.cpp [ 78%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp [ 78%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuNeighborList.cpp [ 78%] Linking CXX executable ../../TestSerializeMonteCarloBarostat cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -o ../../TestSerializeMonteCarloBarostat -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 78%] Built target TestSerializeMonteCarloBarostat make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloFlexibleBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloFlexibleBarostat.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloFlexibleBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloFlexibleBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloFlexibleBarostat.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloFlexibleBarostat.dir/TestSerializeMonteCarloFlexibleBarostat.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeMonteCarloFlexibleBarostat.dir/TestSerializeMonteCarloFlexibleBarostat.cpp.o -MF CMakeFiles/TestSerializeMonteCarloFlexibleBarostat.dir/TestSerializeMonteCarloFlexibleBarostat.cpp.o.d -o CMakeFiles/TestSerializeMonteCarloFlexibleBarostat.dir/TestSerializeMonteCarloFlexibleBarostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeMonteCarloFlexibleBarostat.cpp [ 82%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src/HippoNonbondedForce.cpp [ 82%] Linking CXX executable ../../TestSerializeMonteCarloFlexibleBarostat cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloFlexibleBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloFlexibleBarostat.dir/TestSerializeMonteCarloFlexibleBarostat.cpp.o -o ../../TestSerializeMonteCarloFlexibleBarostat -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target TestSerializeMonteCarloFlexibleBarostat make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o -MF CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o.d -o CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeMonteCarloMembraneBarostat.cpp [ 82%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/src/HippoNonbondedForceImpl.cpp [ 82%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp [ 82%] Linking CXX executable ../../TestSerializeMonteCarloMembraneBarostat cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/link.txt --verbose=1 [ 82%] Linking CXX executable ../../TestSerializeIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o -o ../../TestSerializeIntegrator -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o -o ../../TestSerializeMonteCarloMembraneBarostat -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 82%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/src/AmoebaMultipoleForceProxy.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target TestSerializeIntegrator make -f serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/depend make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/DependInfo.cmake --color= [ 82%] Built target TestSerializeMonteCarloMembraneBarostat make -f serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o [ 82%] Building CXX object serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -MF CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o.d -o CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeNonbondedForce.cpp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o -MF CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o.d -o CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeNoseHooverIntegrator.cpp [ 82%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/src/AmoebaSerializationProxyRegistration.cpp [ 82%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/src/AmoebaTorsionTorsionForceProxy.cpp [ 82%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuNonbondedForce.cpp [ 82%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/src/AmoebaVdwForceProxy.cpp [ 82%] Linking CXX executable ../../TestSerializeNoseHooverIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeNoseHooverIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o -o ../../TestSerializeNoseHooverIntegrator -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target TestSerializeNoseHooverIntegrator make -f serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o -MF CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o.d -o CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializePeriodicTorsionForce.cpp [ 82%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/src/AmoebaWcaDispersionForceProxy.cpp [ 82%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoeba_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/src/HippoNonbondedForceProxy.cpp [ 82%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -mavx -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuNonbondedForceAvx.cpp [ 82%] Linking CXX executable ../../TestSerializeNonbondedForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -o ../../TestSerializeNonbondedForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target TestSerializeNonbondedForce make -f serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o -MF CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o.d -o CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeRBTorsionForce.cpp [ 82%] Linking CXX executable ../../TestSerializePeriodicTorsionForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializePeriodicTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o -o ../../TestSerializePeriodicTorsionForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target TestSerializePeriodicTorsionForce make -f serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o -MF CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o.d -o CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeRMSDForce.cpp [ 82%] Linking CXX shared library ../../libOpenMMAmoeba.so cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMAmoeba.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMAmoeba.so -o ../../libOpenMMAmoeba.so CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o -Wl,-rpath,"\$ORIGIN:" /usr/lib/x86_64-linux-gnu/libdl.so ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Linking CXX executable ../../TestSerializeRBTorsionForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeRBTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o -o ../../TestSerializeRBTorsionForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 82%] Built target OpenMMAmoeba make -f serialization/tests/CMakeFiles/TestSerializeState.dir/build.make serialization/tests/CMakeFiles/TestSerializeState.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeState.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeState.dir/build.make serialization/tests/CMakeFiles/TestSerializeState.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object serialization/tests/CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o -MF CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o.d -o CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeState.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target TestSerializeRBTorsionForce make -f serialization/tests/CMakeFiles/TestSerializeSystem.dir/build.make serialization/tests/CMakeFiles/TestSerializeSystem.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeSystem.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeSystem.dir/build.make serialization/tests/CMakeFiles/TestSerializeSystem.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object serialization/tests/CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o -MF CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o.d -o CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeSystem.cpp [ 82%] Linking CXX executable ../../TestSerializeRMSDForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeRMSDForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o -o ../../TestSerializeRMSDForce -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 82%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -mavx2 -mfma -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuNonbondedForceAvx2.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target TestSerializeRMSDForce make -f serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/build.make serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/build.make serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 85%] Building CXX object serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o -MF CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o.d -o CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/tests/TestSerializeTabulatedFunctions.cpp [ 85%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuNonbondedForceFvec.cpp [ 85%] Linking CXX executable ../../TestSerializeSystem cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeSystem.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o -o ../../TestSerializeSystem -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuNonbondedForceVec4.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target TestSerializeSystem make -f tests/CMakeFiles/TestEnforcePeriodicBox.dir/build.make tests/CMakeFiles/TestEnforcePeriodicBox.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestEnforcePeriodicBox.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestEnforcePeriodicBox.dir/build.make tests/CMakeFiles/TestEnforcePeriodicBox.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -MF CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o.d -o CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests/TestEnforcePeriodicBox.cpp [ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuPlatform.cpp [ 87%] Linking CXX executable ../../TestSerializeState cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeState.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o -o ../../TestSerializeState -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target TestSerializeState make -f tests/CMakeFiles/TestFindExclusions.dir/build.make tests/CMakeFiles/TestFindExclusions.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindExclusions.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestFindExclusions.dir/build.make tests/CMakeFiles/TestFindExclusions.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o -MF CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o.d -o CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests/TestFindExclusions.cpp [ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuRandom.cpp [ 87%] Linking CXX executable ../TestEnforcePeriodicBox cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEnforcePeriodicBox.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -o ../TestEnforcePeriodicBox -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMCPU_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src/CpuSETTLE.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target TestEnforcePeriodicBox make -f tests/CMakeFiles/TestFindMolecules.dir/build.make tests/CMakeFiles/TestFindMolecules.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindMolecules.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestFindMolecules.dir/build.make tests/CMakeFiles/TestFindMolecules.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o -MF CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o.d -o CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests/TestFindMolecules.cpp make -f tests/CMakeFiles/TestParser.dir/build.make tests/CMakeFiles/TestParser.dir/depend [ 87%] Linking CXX executable ../TestFindExclusions cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFindExclusions.dir/link.txt --verbose=1 make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestParser.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o -o ../TestFindExclusions -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestParser.dir/build.make tests/CMakeFiles/TestParser.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestParser.dir/TestParser.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestParser.dir/TestParser.cpp.o -MF CMakeFiles/TestParser.dir/TestParser.cpp.o.d -o CMakeFiles/TestParser.dir/TestParser.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests/TestParser.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target TestFindExclusions make -f tests/CMakeFiles/TestSplineFitter.dir/build.make tests/CMakeFiles/TestSplineFitter.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSplineFitter.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestSplineFitter.dir/build.make tests/CMakeFiles/TestSplineFitter.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o -MF CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o.d -o CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests/TestSplineFitter.cpp make -f tests/CMakeFiles/TestSystem.dir/build.make tests/CMakeFiles/TestSystem.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSystem.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestSystem.dir/build.make tests/CMakeFiles/TestSystem.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestSystem.dir/TestSystem.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestSystem.dir/TestSystem.cpp.o -MF CMakeFiles/TestSystem.dir/TestSystem.cpp.o.d -o CMakeFiles/TestSystem.dir/TestSystem.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests/TestSystem.cpp [ 87%] Linking CXX executable ../../TestSerializeTabulatedFunctions cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeTabulatedFunctions.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o -o ../../TestSerializeTabulatedFunctions -Wl,-rpath,"\$ORIGIN" ../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target TestSerializeTabulatedFunctions make -f tests/CMakeFiles/TestVectorExpression.dir/build.make tests/CMakeFiles/TestVectorExpression.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorExpression.dir/DependInfo.cmake --color= make -f tests/CMakeFiles/TestVectorize.dir/build.make tests/CMakeFiles/TestVectorize.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorize.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorExpression.dir/build.make tests/CMakeFiles/TestVectorExpression.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorize.dir/build.make tests/CMakeFiles/TestVectorize.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -MF CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o.d -o CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests/TestVectorExpression.cpp [ 87%] Building CXX object tests/CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -msse4.1 -std=gnu++11 -MD -MT tests/CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o -MF CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o.d -o CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests/TestVectorize.cpp make -f tests/CMakeFiles/TestVectorizeAvx.dir/build.make tests/CMakeFiles/TestVectorizeAvx.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorizeAvx.dir/build.make tests/CMakeFiles/TestVectorizeAvx.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -mavx -std=gnu++11 -MD -MT tests/CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o -MF CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o.d -o CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests/TestVectorizeAvx.cpp [ 89%] Linking CXX executable ../TestFindMolecules cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFindMolecules.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o -o ../TestFindMolecules -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Built target TestFindMolecules make -f tests/CMakeFiles/TestVectorizeAvx2.dir/build.make tests/CMakeFiles/TestVectorizeAvx2.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorizeAvx2.dir/build.make tests/CMakeFiles/TestVectorizeAvx2.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object tests/CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -mfma -mavx2 -std=gnu++11 -MD -MT tests/CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o -MF CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o.d -o CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests/TestVectorizeAvx2.cpp [ 89%] Linking CXX executable ../TestVectorizeAvx cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorizeAvx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o -o ../TestVectorizeAvx -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 89%] Linking CXX executable ../TestVectorExpression cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorExpression.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -o ../TestVectorExpression -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Built target TestVectorizeAvx make -f examples/CMakeFiles/HelloArgon.dir/build.make examples/CMakeFiles/HelloArgon.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/examples /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloArgon.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloArgon.dir/build.make examples/CMakeFiles/HelloArgon.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object examples/CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT examples/CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o -MF CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o.d -o CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/examples/HelloArgon.cpp [ 89%] Linking CXX executable ../TestSystem cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSystem.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSystem.dir/TestSystem.cpp.o -o ../TestSystem -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Built target TestVectorExpression make -f examples/CMakeFiles/HelloSodiumChloride.dir/build.make examples/CMakeFiles/HelloSodiumChloride.dir/depend make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/examples /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloSodiumChloride.dir/DependInfo.cmake --color= [ 89%] Built target TestSystem make -f examples/CMakeFiles/HelloEthane.dir/build.make examples/CMakeFiles/HelloEthane.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/examples /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloEthane.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloSodiumChloride.dir/build.make examples/CMakeFiles/HelloSodiumChloride.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object examples/CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT examples/CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o -MF CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o.d -o CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/examples/HelloSodiumChloride.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloEthane.dir/build.make examples/CMakeFiles/HelloEthane.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object examples/CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT examples/CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o -MF CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o.d -o CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/examples/HelloEthane.cpp [ 89%] Linking CXX executable ../HelloArgon cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloArgon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o -o ../HelloArgon -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Built target HelloArgon make -f examples/CMakeFiles/HelloWaterBox.dir/build.make examples/CMakeFiles/HelloWaterBox.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/examples /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloWaterBox.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloWaterBox.dir/build.make examples/CMakeFiles/HelloWaterBox.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object examples/CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT examples/CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o -MF CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o.d -o CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/examples/HelloWaterBox.cpp [ 89%] Linking CXX executable ../TestSplineFitter cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSplineFitter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o -o ../TestSplineFitter -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 89%] Linking CXX executable ../HelloSodiumChloride cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloSodiumChloride.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o -o ../HelloSodiumChloride -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Built target HelloSodiumChloride make -f plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/build.make plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/build.make plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernelFactory.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Built target TestSplineFitter make -f plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/build.make plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/platforms/reference /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/build.make plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMRPMDReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o -MF CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o.d -o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/platforms/reference/src/ReferenceRpmdKernelFactory.cpp [ 89%] Linking CXX executable ../TestVectorizeAvx2 cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorizeAvx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o -o ../TestVectorizeAvx2 -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Built target TestVectorizeAvx2 make -f plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/build.make plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/build.make plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrudeReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o -MF CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o.d -o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/src/ReferenceDrudeKernelFactory.cpp [ 89%] Linking CXX executable ../TestVectorize cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o -o ../TestVectorize -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 89%] Built target TestVectorize [ 89%] Building CXX object plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMRPMDReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -MF CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o.d -o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/platforms/reference/src/ReferenceRpmdKernels.cpp [ 91%] Building CXX object plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMDrudeReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -MF CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o.d -o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/src/ReferenceDrudeKernels.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernels.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceForce.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp [ 91%] Linking CXX executable ../HelloEthane cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloEthane.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o -o ../HelloEthane -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target HelloEthane [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp [ 91%] Linking CXX executable ../HelloWaterBox cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloWaterBox.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o -o ../HelloWaterBox -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target HelloWaterBox [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceVdwForce.cpp [ 91%] Linking CXX shared library ../../../../libOpenMMDrudeReference.so cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMDrudeReference.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMDrudeReference.so -o ../../../../libOpenMMDrudeReference.so CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -Wl,-rpath,"\$ORIGIN:" ../../../../libOpenMMDrude.so ../../../../libOpenMM.so.7.7 -lpthread /usr/lib/x86_64-linux-gnu/libdl.so [ 91%] Linking CXX shared library ../../../../libOpenMMRPMDReference.so cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMRPMDReference.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMRPMDReference.so -o ../../../../libOpenMMRPMDReference.so CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -Wl,-rpath,"\$ORIGIN:" ../../../../libOpenMMRPMD.so ../../../../libOpenMM.so.7.7 -lpthread /usr/lib/x86_64-linux-gnu/libdl.so make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target OpenMMDrudeReference make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o -MF CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o.d -o CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target OpenMMRPMDReference make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 93%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o -MF CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o.d -o CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeLangevinIntegrator.cpp make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 93%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -MF CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o.d -o CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeNoseHoover.cpp [ 95%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -DOpenMMAmoebaReference_EXPORTS -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp [ 95%] Linking CXX executable ../../../../../TestReferenceDrudeNoseHoover cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeNoseHoover.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -o ../../../../../TestReferenceDrudeNoseHoover -Wl,-rpath,"\$ORIGIN" ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o -MF CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o.d -o CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/platforms/reference/tests/TestReferenceDrudeSCFIntegrator.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestReferenceDrudeNoseHoover make -f plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build.make plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build.make plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -MF CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o.d -o CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/platforms/reference/tests/TestReferenceRpmd.cpp [ 95%] Linking CXX executable ../../../../../TestReferenceDrudeForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o -o ../../../../../TestReferenceDrudeForce -Wl,-rpath,"\$ORIGIN" ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestReferenceDrudeForce [ 95%] Linking CXX executable ../../../../../TestReferenceDrudeLangevinIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o -o ../../../../../TestReferenceDrudeLangevinIntegrator -Wl,-rpath,"\$ORIGIN" ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestReferenceDrudeLangevinIntegrator [ 95%] Linking CXX executable ../../../../../TestReferenceDrudeSCFIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o -o ../../../../../TestReferenceDrudeSCFIntegrator -Wl,-rpath,"\$ORIGIN" ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestReferenceDrudeSCFIntegrator [ 95%] Linking CXX executable ../../../../../TestReferenceRpmd cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRpmd.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -o ../../../../../TestReferenceRpmd -Wl,-rpath,"\$ORIGIN" ../../../../../libOpenMMRPMDReference.so ../../../../../libOpenMMRPMD.so ../../../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestReferenceRpmd [ 95%] Linking CXX shared library ../../../libOpenMMCPU.so cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMCPU.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMCPU.so -o ../../../libOpenMMCPU.so CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -Wl,-rpath,"\$ORIGIN:" ../../../libOpenMM.so.7.7 -lpthread /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 95%] Linking CXX executable ../TestParser cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestParser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestParser.dir/TestParser.cpp.o -o ../TestParser -Wl,-rpath,"\$ORIGIN" ../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target TestParser make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target OpenMMCPU make -f platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/DependInfo.cmake --color= make -f platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/DependInfo.cmake --color= make -f platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/depend make -f platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/DependInfo.cmake --color= make -f platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/build make -f platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o -MF CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o.d -o CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuEwald.cpp [ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o -MF CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o.d -o CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuCustomNonbondedForce.cpp [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o -MF CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o.d -o CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuCustomGBForce.cpp [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -MF CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o.d -o CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuCheckpoints.cpp [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o -MF CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o.d -o CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuGBSAOBCForce.cpp cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -MF CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o.d -o CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuDispersionPME.cpp [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o -MF CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o.d -o CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuGayBerneForce.cpp [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -MF CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o.d -o CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuCustomManyParticleForce.cpp [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o -MF CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o.d -o CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuCompoundIntegrator.cpp [ 97%] Linking CXX executable ../../../TestCpuGBSAOBCForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuGBSAOBCForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o -o ../../../TestCpuGBSAOBCForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target TestCpuGBSAOBCForce make -f platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o -MF CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o.d -o CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuHarmonicAngleForce.cpp [ 97%] Linking CXX executable ../../../TestCpuGayBerneForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuGayBerneForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o -o ../../../TestCpuGayBerneForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 97%] Linking CXX executable ../../../TestCpuCheckpoints cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCheckpoints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -o ../../../TestCpuCheckpoints -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target TestCpuGayBerneForce make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o -MF CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o.d -o CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuLangevinIntegrator.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target TestCpuCheckpoints make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [ 97%] Linking CXX executable ../../../TestCpuCustomGBForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomGBForce.dir/link.txt --verbose=1 [100%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o -MF CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o.d -o CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuLangevinMiddleIntegrator.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o -o ../../../TestCpuCustomGBForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuCustomGBForce make -f platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/DependInfo.cmake --color= [100%] Linking CXX executable ../../../TestCpuCompoundIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCompoundIntegrator.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o -o ../../../TestCpuCompoundIntegrator -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [100%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o -MF CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o.d -o CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuNeighborList.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuCompoundIntegrator make -f platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -MF CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o.d -o CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuNonbondedForce.cpp [100%] Linking CXX executable ../../../TestCpuCustomManyParticleForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomManyParticleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -o ../../../TestCpuCustomManyParticleForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [100%] Linking CXX executable ../../../TestCpuHarmonicAngleForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuHarmonicAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o -o ../../../TestCpuHarmonicAngleForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuCustomManyParticleForce make -f platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o -MF CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o.d -o CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuPeriodicTorsionForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuHarmonicAngleForce make -f platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -MF CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o.d -o CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuRBTorsionForce.cpp [100%] Linking CXX executable ../../../TestCpuNeighborList cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuNeighborList.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o -o ../../../TestCpuNeighborList -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuNeighborList make -f platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o -MF CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o.d -o CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/cpu/tests/TestCpuSettle.cpp [100%] Linking CXX executable ../../../TestCpuLangevinIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuLangevinIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o -o ../../../TestCpuLangevinIntegrator -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuLangevinIntegrator [100%] Linking CXX executable ../../../TestCpuLangevinMiddleIntegrator cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o -o ../../../TestCpuLangevinMiddleIntegrator -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [100%] Linking CXX executable ../../../TestCpuSettle cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuSettle.dir/link.txt --verbose=1 [100%] Linking CXX shared library ../../../../libOpenMMAmoebaReference.so cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMAmoebaReference.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuLangevinMiddleIntegrator /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMAmoebaReference.so -o ../../../../libOpenMMAmoebaReference.so CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o -Wl,-rpath,"\$ORIGIN:" ../../../../libOpenMMAmoeba.so ../../../../libOpenMM.so.7.7 -lpthread /usr/lib/x86_64-linux-gnu/libdl.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o -o ../../../TestCpuSettle -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuSettle make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target OpenMMAmoebaReference make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/DependInfo.cmake --color= make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/DependInfo.cmake --color= make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/depend make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -MF CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o.d -o CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -MF CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o.d -o CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaExtrapolatedPolarization.cpp [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -MF CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o.d -o CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaTorsionTorsionForce.cpp [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -MF CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o.d -o CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaMultipoleForce.cpp [100%] Linking CXX executable ../../../TestCpuCustomNonbondedForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o -o ../../../TestCpuCustomNonbondedForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuCustomNonbondedForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -MF CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o.d -o CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaVdwForce.cpp [100%] Linking CXX executable ../../../TestCpuRBTorsionForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuRBTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -o ../../../TestCpuRBTorsionForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [100%] Linking CXX executable ../../../../../TestReferenceAmoebaGeneralizedKirkwoodForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -o ../../../../../TestReferenceAmoebaGeneralizedKirkwoodForce -Wl,-rpath,"\$ORIGIN" ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuRBTorsionForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -MF CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o.d -o CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceHippoNonbondedForce.cpp make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaGeneralizedKirkwoodForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/depend make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openmm-LB2V4D/openmm-7.7.0+dfsg /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build make[4]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src/SimTKReference -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/src -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/asmjit -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/vecmath/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/irrxml/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/csha1/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/hilbert/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lbfgs/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/sfmt/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/lepton/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/quern/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/libraries/jama/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/./include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/tests -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/platforms/reference/tests -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -MF CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o.d -o CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -c /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/platforms/reference/tests/TestReferenceWcaDispersionForce.cpp [100%] Linking CXX executable ../../../TestCpuPeriodicTorsionForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuPeriodicTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o -o ../../../TestCpuPeriodicTorsionForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [100%] Linking CXX executable ../../../TestCpuDispersionPME cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuDispersionPME.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -o ../../../TestCpuDispersionPME -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuPeriodicTorsionForce make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuDispersionPME [100%] Linking CXX executable ../../../../../TestReferenceAmoebaTorsionTorsionForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -o ../../../../../TestReferenceAmoebaTorsionTorsionForce -Wl,-rpath,"\$ORIGIN" ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaTorsionTorsionForce [100%] Linking CXX executable ../../../TestCpuNonbondedForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -o ../../../TestCpuNonbondedForce -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuNonbondedForce [100%] Linking CXX executable ../../../../../TestReferenceAmoebaExtrapolatedPolarization cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -o ../../../../../TestReferenceAmoebaExtrapolatedPolarization -Wl,-rpath,"\$ORIGIN" ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaExtrapolatedPolarization [100%] Linking CXX executable ../../../../../TestReferenceWcaDispersionForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceWcaDispersionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -o ../../../../../TestReferenceWcaDispersionForce -Wl,-rpath,"\$ORIGIN" ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceWcaDispersionForce [100%] Linking CXX executable ../../../TestCpuEwald cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuEwald.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o -o ../../../TestCpuEwald -Wl,-rpath,"\$ORIGIN" ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestCpuEwald [100%] Linking CXX executable ../../../../../TestReferenceAmoebaMultipoleForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -o ../../../../../TestReferenceAmoebaMultipoleForce -Wl,-rpath,"\$ORIGIN" ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaMultipoleForce [100%] Linking CXX executable ../../../../../TestReferenceHippoNonbondedForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHippoNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -o ../../../../../TestReferenceHippoNonbondedForce -Wl,-rpath,"\$ORIGIN" ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceHippoNonbondedForce [100%] Linking CXX executable ../../../../../TestReferenceAmoebaVdwForce cd /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaVdwForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -o ../../../../../TestReferenceAmoebaVdwForce -Wl,-rpath,"\$ORIGIN" ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.7 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaVdwForce make[3]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' cd obj-*/python && python3 setup.py build /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/setup.py:10: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup Compiling openmm/app/internal/compiled.pyx because it changed. [1/1] Cythonizing openmm/app/internal/compiled.pyx author Peter Eastman data_files [] description Python wrapper for OpenMM (a C++ MD package) download_url https://openmm.org ext_modules[, ] license Python Software Foundation License (BSD-like) long_descriptionOpenMM is a toolkit for molecular simulation. It can be used either as a stand-alone application for running simulations, or as a library you call from your own code. It provides a combination of extreme flexibility (through custom forces and integrators), openness, and high performance (especially on recent GPUs) that make it truly unique among simulation codes. name OpenMM package_data{'openmm': [], 'openmm.app': ['data/*.xml', 'data/*.pdb', 'data/amber14/*.xml', 'data/charmm36/*.xml', 'data/implicit/*.xml'], 'openmm.app.internal': []} packages['simtk', 'simtk.unit', 'simtk.openmm', 'simtk.openmm.app', 'openmm', 'openmm.unit', 'openmm', 'openmm.app', 'openmm.app.internal', 'openmm.app.internal.charmm', 'openmm.app.internal.pdbx', 'openmm.app.internal.pdbx.reader', 'openmm.app.internal.pdbx.writer'] platforms ['Linux', 'Mac OS X', 'Windows'] url https://openmm.org version 7.7.0 running build running build_py creating build creating build/lib.linux-x86_64-3.10 creating build/lib.linux-x86_64-3.10/simtk copying simtk/__init__.py -> build/lib.linux-x86_64-3.10/simtk creating build/lib.linux-x86_64-3.10/simtk/unit copying simtk/unit/__init__.py -> build/lib.linux-x86_64-3.10/simtk/unit creating build/lib.linux-x86_64-3.10/simtk/openmm copying simtk/openmm/__init__.py -> build/lib.linux-x86_64-3.10/simtk/openmm creating build/lib.linux-x86_64-3.10/simtk/openmm/app copying simtk/openmm/app/__init__.py -> build/lib.linux-x86_64-3.10/simtk/openmm/app creating build/lib.linux-x86_64-3.10/openmm copying openmm/version.py -> build/lib.linux-x86_64-3.10/openmm copying openmm/__init__.py -> build/lib.linux-x86_64-3.10/openmm copying openmm/amd.py -> build/lib.linux-x86_64-3.10/openmm copying openmm/mtsintegrator.py -> build/lib.linux-x86_64-3.10/openmm copying openmm/testInstallation.py -> build/lib.linux-x86_64-3.10/openmm copying openmm/vec3.py -> build/lib.linux-x86_64-3.10/openmm copying openmm/openmm.py -> build/lib.linux-x86_64-3.10/openmm creating build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/__init__.py -> build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/basedimension.py -> build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/baseunit.py -> build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/constants.py -> build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/doctests.py -> build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/mymatrix.py -> build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/prefix.py -> build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/quantity.py -> build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/standard_dimensions.py -> build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/unit.py -> build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/unit_definitions.py -> build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/unit_math.py -> build/lib.linux-x86_64-3.10/openmm/unit copying openmm/unit/unit_operators.py -> build/lib.linux-x86_64-3.10/openmm/unit creating build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/__init__.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/amberinpcrdfile.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/charmmpsffile.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/amberprmtopfile.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/charmmparameterset.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/checkpointreporter.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/charmmcrdfiles.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/dcdfile.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/dcdreporter.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/desmonddmsfile.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/element.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/forcefield.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/gromacsgrofile.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/gromacstopfile.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/metadynamics.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/modeller.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/pdbfile.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/pdbreporter.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/pdbxfile.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/simulatedtempering.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/simulation.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/statedatareporter.py -> build/lib.linux-x86_64-3.10/openmm/app copying openmm/app/topology.py -> build/lib.linux-x86_64-3.10/openmm/app creating build/lib.linux-x86_64-3.10/openmm/app/internal copying openmm/app/internal/__init__.py -> build/lib.linux-x86_64-3.10/openmm/app/internal copying openmm/app/internal/amber_file_parser.py -> build/lib.linux-x86_64-3.10/openmm/app/internal copying openmm/app/internal/argtracker.py -> build/lib.linux-x86_64-3.10/openmm/app/internal copying openmm/app/internal/customgbforces.py -> build/lib.linux-x86_64-3.10/openmm/app/internal copying openmm/app/internal/pdbstructure.py -> build/lib.linux-x86_64-3.10/openmm/app/internal copying openmm/app/internal/singleton.py -> build/lib.linux-x86_64-3.10/openmm/app/internal copying openmm/app/internal/unitcell.py -> build/lib.linux-x86_64-3.10/openmm/app/internal creating build/lib.linux-x86_64-3.10/openmm/app/internal/charmm copying openmm/app/internal/charmm/__init__.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/charmm copying openmm/app/internal/charmm/_charmmfile.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/charmm copying openmm/app/internal/charmm/exceptions.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/charmm copying openmm/app/internal/charmm/topologyobjects.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/charmm creating build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx copying openmm/app/internal/pdbx/__init__.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx creating build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader copying openmm/app/internal/pdbx/reader/PdbxContainers.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader copying openmm/app/internal/pdbx/reader/PdbxParser.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader copying openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader copying openmm/app/internal/pdbx/reader/PdbxReader.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader copying openmm/app/internal/pdbx/reader/PdbxReaderTests.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader copying openmm/app/internal/pdbx/reader/__init__.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader creating build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/writer copying openmm/app/internal/pdbx/writer/PdbxWriter.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/writer copying openmm/app/internal/pdbx/writer/PdbxWriterTests.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/writer copying openmm/app/internal/pdbx/writer/__init__.py -> build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/writer creating build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/absinth.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amber03.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amber03_obc.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amber10.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amber10_obc.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amber14-all.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amber96.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amber99Test.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amber96_obc.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amber99sb.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amber99_obc.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amber99sbildn.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amber99sbnmr.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amberfb15.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amoeba2009.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amoeba2009_gk.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amoeba2013.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amoeba2013_gk.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amoeba2018_gk.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/amoeba2018.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/charmm36.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/charmm_polar_2013.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/glycam-hydrogens.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/charmm_polar_2019.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/hydrogens.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/iamoeba.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/pdbNames.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/residues.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/spce.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/swm4ndp.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/tip3p.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/tip3pfb.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/tip4pew.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/tip4pfb.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/tip5p.xml -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/DLPE.pdb -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/DOPC.pdb -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/DMPC.pdb -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/DPPC.pdb -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/DLPC.pdb -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/POPC.pdb -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/POPE.pdb -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/spce.pdb -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/test.pdb -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/tip3p.pdb -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/tip4pew.pdb -> build/lib.linux-x86_64-3.10/openmm/app/data copying openmm/app/data/tip5p.pdb -> build/lib.linux-x86_64-3.10/openmm/app/data creating build/lib.linux-x86_64-3.10/openmm/app/data/amber14 copying openmm/app/data/amber14/DNA.OL15.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/amber14 copying openmm/app/data/amber14/GLYCAM_06j-1.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/amber14 copying openmm/app/data/amber14/RNA.OL3.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/amber14 copying openmm/app/data/amber14/DNA.bsc1.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/amber14 copying openmm/app/data/amber14/protein.ff14SB.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/amber14 copying openmm/app/data/amber14/lipid17.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/amber14 copying openmm/app/data/amber14/protein.ff15ipq.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/amber14 copying openmm/app/data/amber14/tip3p.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/amber14 copying openmm/app/data/amber14/spce.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/amber14 copying openmm/app/data/amber14/tip4pew.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/amber14 copying openmm/app/data/amber14/tip4pfb.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/amber14 copying openmm/app/data/amber14/tip3pfb.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/amber14 creating build/lib.linux-x86_64-3.10/openmm/app/data/charmm36 copying openmm/app/data/charmm36/spce.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/charmm36 copying openmm/app/data/charmm36/tip3p-pme-b.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/charmm36 copying openmm/app/data/charmm36/tip3p-pme-f.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/charmm36 copying openmm/app/data/charmm36/tip4p2005.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/charmm36 copying openmm/app/data/charmm36/tip4pew.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/charmm36 copying openmm/app/data/charmm36/tip5pew.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/charmm36 copying openmm/app/data/charmm36/tip5p.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/charmm36 copying openmm/app/data/charmm36/water.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/charmm36 creating build/lib.linux-x86_64-3.10/openmm/app/data/implicit copying openmm/app/data/implicit/gbn.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/implicit copying openmm/app/data/implicit/gbn2.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/implicit copying openmm/app/data/implicit/hct.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/implicit copying openmm/app/data/implicit/obc1.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/implicit copying openmm/app/data/implicit/obc2.xml -> build/lib.linux-x86_64-3.10/openmm/app/data/implicit running build_ext building 'openmm._openmm' extension creating build/temp.linux-x86_64-3.10 creating build/temp.linux-x86_64-3.10/src creating build/temp.linux-x86_64-3.10/src/swig_doxygen x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DMAJOR_VERSION=7 -DMINOR_VERSION=7 -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/olla/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/serialization/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/rpmd/openmmapi/include -I/build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/drude/openmmapi/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c src/swig_doxygen/OpenMMSwig.cxx -o build/temp.linux-x86_64-3.10/src/swig_doxygen/OpenMMSwig.o -std=c++11 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from src/swig_doxygen/OpenMMSwig.cxx:6591: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/OpenMM.h:53, from src/swig_doxygen/OpenMMSwig.cxx:6577: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/GayBerneForce.h: In constructor ‘OpenMM::GayBerneForce::ParticleInfo::ParticleInfo(double, double, int, int, double, double, double, double, double, double)’: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/GayBerneForce.h:286:19: warning: ‘OpenMM::GayBerneForce::ParticleInfo::epsilon’ will be initialized after [-Wreorder] 286 | double sigma, epsilon, sx, sy, sz, ex, ey, ez; | ^~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/GayBerneForce.h:285:9: warning: ‘int OpenMM::GayBerneForce::ParticleInfo::xparticle’ [-Wreorder] 285 | int xparticle, yparticle; | ^~~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/GayBerneForce.h:291:5: warning: when initialized here [-Wreorder] 291 | ParticleInfo(double sigma, double epsilon, int xparticle, int yparticle, double sx, double sy, double sz, double ex, double ey, double ez) : | ^~~~~~~~~~~~ In file included from /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/OpenMM.h:65, from src/swig_doxygen/OpenMMSwig.cxx:6577: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NonbondedForce.h: In constructor ‘OpenMM::NonbondedForce::ParticleOffsetInfo::ParticleOffsetInfo(int, int, double, double, double)’: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NonbondedForce.h:686:19: warning: ‘OpenMM::NonbondedForce::ParticleOffsetInfo::parameter’ will be initialized after [-Wreorder] 686 | int particle, parameter; | ^~~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NonbondedForce.h:686:9: warning: ‘int OpenMM::NonbondedForce::ParticleOffsetInfo::particle’ [-Wreorder] 686 | int particle, parameter; | ^~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NonbondedForce.h:692:5: warning: when initialized here [-Wreorder] 692 | ParticleOffsetInfo(int parameter, int particle, double chargeScale, double sigmaScale, double epsilonScale) : | ^~~~~~~~~~~~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NonbondedForce.h: In constructor ‘OpenMM::NonbondedForce::ExceptionOffsetInfo::ExceptionOffsetInfo(int, int, double, double, double)’: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NonbondedForce.h:703:20: warning: ‘OpenMM::NonbondedForce::ExceptionOffsetInfo::parameter’ will be initialized after [-Wreorder] 703 | int exception, parameter; | ^~~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NonbondedForce.h:703:9: warning: ‘int OpenMM::NonbondedForce::ExceptionOffsetInfo::exception’ [-Wreorder] 703 | int exception, parameter; | ^~~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/NonbondedForce.h:709:5: warning: when initialized here [-Wreorder] 709 | ExceptionOffsetInfo(int parameter, int exception, double chargeProdScale, double sigmaScale, double epsilonScale) : | ^~~~~~~~~~~~~~~~~~~ In file included from /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h:38, from src/swig_doxygen/OpenMMSwig.cxx:6578: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h: In constructor ‘OpenMM::AmoebaVdwForce::VdwInfo::VdwInfo(int, double, double, int, double, bool)’: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h:492:36: warning: ‘OpenMM::AmoebaVdwForce::VdwInfo::epsilon’ will be initialized after [-Wreorder] 492 | double reductionFactor, sigma, epsilon, cutoff; | ^~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h:491:22: warning: ‘int OpenMM::AmoebaVdwForce::VdwInfo::typeIndex’ [-Wreorder] 491 | int parentIndex, typeIndex; | ^~~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h:501:5: warning: when initialized here [-Wreorder] 501 | VdwInfo(int parentIndex, double sigma, double epsilon, int typeIndex, double reductionFactor, bool isAlchemical) : | ^~~~~~~ In file included from /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h:40, from src/swig_doxygen/OpenMMSwig.cxx:6578: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h: In constructor ‘OpenMM::HippoNonbondedForce::ParticleInfo::ParticleInfo(double, const std::vector >&, const std::vector >&, double, double, double, double, double, double, double, double, double, int, int, int, int)’: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:407:33: warning: ‘OpenMM::HippoNonbondedForce::ParticleInfo::quadrupole’ will be initialized after [-Wreorder] 407 | std::vector dipole, quadrupole; | ^~~~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:406:20: warning: ‘double OpenMM::HippoNonbondedForce::ParticleInfo::coreCharge’ [-Wreorder] 406 | double charge, coreCharge, alpha, epsilon, damping, c6, pauliK, pauliQ, pauliAlpha, polarizability; | ^~~~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:414:5: warning: when initialized here [-Wreorder] 414 | ParticleInfo(double charge, const std::vector& dipole, const std::vector& quadrupole, double coreCharge, | ^~~~~~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:406:89: warning: ‘OpenMM::HippoNonbondedForce::ParticleInfo::polarizability’ will be initialized after [-Wreorder] 406 | double charge, coreCharge, alpha, epsilon, damping, c6, pauliK, pauliQ, pauliAlpha, polarizability; | ^~~~~~~~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:405:9: warning: ‘int OpenMM::HippoNonbondedForce::ParticleInfo::axisType’ [-Wreorder] 405 | int axisType, multipoleAtomZ, multipoleAtomX, multipoleAtomY; | ^~~~~~~~ /build/openmm-LB2V4D/openmm-7.7.0+dfsg/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:414:5: warning: when initialized here [-Wreorder] 414 | ParticleInfo(double charge, const std::vector& dipole, const std::vector& quadrupole, double coreCharge, | ^~~~~~~~~~~~ In file included from /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/State.h:35, from /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Integrator.h:35, from /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/BrownianIntegrator.h:35, from /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/OpenMM.h:36, from src/swig_doxygen/OpenMMSwig.cxx:6577: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Vec3.h: At global scope: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/openmmapi/include/openmm/Vec3.h:160:13: warning: ‘OpenMM::Vec3 OpenMM::operator*(double, OpenMM::Vec3)’ defined but not used [-Wunused-function] 160 | static Vec3 operator*(double lhs, Vec3 rhs) { | ^~~~~~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_HippoNonbondedForce_setParticleParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:79385:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 79385 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:79176:25: note: declared here 79176 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx:79386:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v5’ [-Wfree-nonheap-object] 79386 | if (SWIG_IsNewObj(res5)) delete arg5; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:79178:25: note: declared here 79178 | std::vector< double > v5 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx:79389:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 79389 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:79176:25: note: declared here 79176 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_HippoNonbondedForce_addParticle(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:78941:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 78941 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:78736:25: note: declared here 78736 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx:78942:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 78942 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:78738:25: note: declared here 78738 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx:78945:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 78945 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:78736:25: note: declared here 78736 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_HippoNonbondedForce_setExtrapolationCoefficients(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:78262:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v2’ [-Wfree-nonheap-object] 78262 | if (SWIG_IsNewObj(res2)) delete arg2; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:78233:25: note: declared here 78233 | std::vector< double > v2 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_Discrete3DFunction_setFunctionParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:68439:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v5’ [-Wfree-nonheap-object] 68439 | if (SWIG_IsNewObj(res5)) delete arg5; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:68395:25: note: declared here 68395 | std::vector< double > v5 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Discrete3DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:68301:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 68301 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:68261:25: note: declared here 68261 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_Discrete2DFunction_setFunctionParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:68123:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 68123 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:68084:25: note: declared here 68084 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Discrete2DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:68003:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 68003 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:67968:25: note: declared here 67968 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_Discrete1DFunction_setFunctionParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:67833:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v2’ [-Wfree-nonheap-object] 67833 | if (SWIG_IsNewObj(res2)) delete arg2; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:67804:25: note: declared here 67804 | std::vector< double > v2 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Discrete1DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:67749:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v1’ [-Wfree-nonheap-object] 67749 | if (SWIG_IsNewObj(res1)) delete arg1; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:67723:25: note: declared here 67723 | std::vector< double > v1 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomNonbondedForce_setFunctionParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:65939:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 65939 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:65865:25: note: declared here 65865 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomNonbondedForce_addFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:65765:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 65765 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:65695:25: note: declared here 65695 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomNonbondedForce_setParticleParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:65104:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 65104 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:65070:25: note: declared here 65070 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomManyParticleForce_setParticleParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:62758:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 62758 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:62717:25: note: declared here 62717 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx:62761:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 62761 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:62717:25: note: declared here 62717 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomHbondForce_setFunctionParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:59346:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 59346 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:59272:25: note: declared here 59272 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomHbondForce_addFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:59172:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 59172 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:59102:25: note: declared here 59102 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomGBForce_setFunctionParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:56336:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 56336 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:56262:25: note: declared here 56262 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomGBForce_addFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:56162:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 56162 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:56092:25: note: declared here 56092 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomGBForce_setParticleParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:55168:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 55168 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:55134:25: note: declared here 55134 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomCompoundBondForce_setFunctionParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:50468:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 50468 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:50394:25: note: declared here 50394 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomCompoundBondForce_addFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:50294:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 50294 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:50224:25: note: declared here 50224 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_Continuous3DFunction_setFunctionParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:43465:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v5’ [-Wfree-nonheap-object] 43465 | if (SWIG_IsNewObj(res5)) delete arg5; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:43337:25: note: declared here 43337 | std::vector< double > v5 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx:43468:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v5’ [-Wfree-nonheap-object] 43468 | if (SWIG_IsNewObj(res5)) delete arg5; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:43337:25: note: declared here 43337 | std::vector< double > v5 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_Continuous2DFunction_setFunctionParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:42561:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 42561 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:42466:25: note: declared here 42466 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx:42564:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 42564 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:42466:25: note: declared here 42466 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_Continuous1DFunction_setFunctionParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:41849:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v2’ [-Wfree-nonheap-object] 41849 | if (SWIG_IsNewObj(res2)) delete arg2; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:41792:25: note: declared here 41792 | std::vector< double > v2 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx:41852:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v2’ [-Wfree-nonheap-object] 41852 | if (SWIG_IsNewObj(res2)) delete arg2; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:41792:25: note: declared here 41792 | std::vector< double > v2 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CMAPTorsionForce_setMapParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:37966:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 37966 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:37927:25: note: declared here 37927 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CMAPTorsionForce_addMap(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:37849:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 37849 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:37814:25: note: declared here 37814 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_AmoebaMultipoleForce_setExtrapolationCoefficients(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:31560:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v2’ [-Wfree-nonheap-object] 31560 | if (SWIG_IsNewObj(res2)) delete arg2; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:31531:25: note: declared here 31531 | std::vector< double > v2 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_AmoebaMultipoleForce_setMultipoleParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:31203:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 31203 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:31078:25: note: declared here 31078 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx:31204:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v5’ [-Wfree-nonheap-object] 31204 | if (SWIG_IsNewObj(res5)) delete arg5; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:31080:25: note: declared here 31080 | std::vector< double > v5 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx:31207:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 31207 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:31078:25: note: declared here 31078 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_AmoebaMultipoleForce_addMultipole(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:30909:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 30909 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:30788:25: note: declared here 30788 | std::vector< double > v3 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx:30910:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 30910 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:30790:25: note: declared here 30790 | std::vector< double > v4 ; | ^~ src/swig_doxygen/OpenMMSwig.cxx:30913:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 30913 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx:30788:25: note: declared here 30788 | std::vector< double > v3 ; | ^~ In function ‘PyObject* _wrap_CustomTorsionForce_setTorsionParameters__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomTorsionForce_setTorsionParameters(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:67481:79: src/swig_doxygen/OpenMMSwig.cxx:67319:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v7’ [-Wfree-nonheap-object] 67319 | if (SWIG_IsNewObj(res7)) delete arg7; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomTorsionForce_setTorsionParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:67266:25: note: declared here 67266 | std::vector< double > v7 ; | ^~ In function ‘PyObject* _wrap_CustomTorsionForce_addTorsion__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomTorsionForce_addTorsion(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:67139:67: src/swig_doxygen/OpenMMSwig.cxx:66995:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v6’ [-Wfree-nonheap-object] 66995 | if (SWIG_IsNewObj(res6)) delete arg6; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomTorsionForce_addTorsion(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:66946:25: note: declared here 66946 | std::vector< double > v6 ; | ^~ In function ‘PyObject* _wrap_CustomNonbondedForce_addParticle__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomNonbondedForce_addParticle(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:64999:62: src/swig_doxygen/OpenMMSwig.cxx:64931:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v2’ [-Wfree-nonheap-object] 64931 | if (SWIG_IsNewObj(res2)) delete arg2; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomNonbondedForce_addParticle(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:64902:25: note: declared here 64902 | std::vector< double > v2 ; | ^~ In function ‘PyObject* _wrap_CustomManyParticleForce_addParticle__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomManyParticleForce_addParticle(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:62611:65: src/swig_doxygen/OpenMMSwig.cxx:62543:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v2’ [-Wfree-nonheap-object] 62543 | if (SWIG_IsNewObj(res2)) delete arg2; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomManyParticleForce_addParticle(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:62514:25: note: declared here 62514 | std::vector< double > v2 ; | ^~ In function ‘PyObject* _wrap_CustomManyParticleForce_addParticle__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomManyParticleForce_addParticle(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:62633:67: src/swig_doxygen/OpenMMSwig.cxx:62500:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v2’ [-Wfree-nonheap-object] 62500 | if (SWIG_IsNewObj(res2)) delete arg2; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomManyParticleForce_addParticle(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:62464:25: note: declared here 62464 | std::vector< double > v2 ; | ^~ In function ‘PyObject* _wrap_CustomManyParticleForce_addParticle__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomManyParticleForce_addParticle(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:62633:67: src/swig_doxygen/OpenMMSwig.cxx:62503:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v2’ [-Wfree-nonheap-object] 62503 | if (SWIG_IsNewObj(res2)) delete arg2; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomManyParticleForce_addParticle(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:62464:25: note: declared here 62464 | std::vector< double > v2 ; | ^~ In function ‘PyObject* _wrap_CustomHbondForce_setAcceptorParameters__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomHbondForce_setAcceptorParameters(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:58554:76: src/swig_doxygen/OpenMMSwig.cxx:58411:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v6’ [-Wfree-nonheap-object] 58411 | if (SWIG_IsNewObj(res6)) delete arg6; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomHbondForce_setAcceptorParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:58363:25: note: declared here 58363 | std::vector< double > v6 ; | ^~ In function ‘PyObject* _wrap_CustomHbondForce_addAcceptor__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomHbondForce_addAcceptor(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:58250:64: src/swig_doxygen/OpenMMSwig.cxx:58125:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v5’ [-Wfree-nonheap-object] 58125 | if (SWIG_IsNewObj(res5)) delete arg5; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomHbondForce_addAcceptor(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:58081:25: note: declared here 58081 | std::vector< double > v5 ; | ^~ In function ‘PyObject* _wrap_CustomHbondForce_setDonorParameters__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomHbondForce_setDonorParameters(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:58048:73: src/swig_doxygen/OpenMMSwig.cxx:57905:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v6’ [-Wfree-nonheap-object] 57905 | if (SWIG_IsNewObj(res6)) delete arg6; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomHbondForce_setDonorParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:57857:25: note: declared here 57857 | std::vector< double > v6 ; | ^~ In function ‘PyObject* _wrap_CustomHbondForce_addDonor__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomHbondForce_addDonor(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:57744:61: src/swig_doxygen/OpenMMSwig.cxx:57619:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v5’ [-Wfree-nonheap-object] 57619 | if (SWIG_IsNewObj(res5)) delete arg5; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomHbondForce_addDonor(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:57575:25: note: declared here 57575 | std::vector< double > v5 ; | ^~ In function ‘PyObject* _wrap_CustomGBForce_addParticle__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomGBForce_addParticle(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:55063:55: src/swig_doxygen/OpenMMSwig.cxx:54995:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v2’ [-Wfree-nonheap-object] 54995 | if (SWIG_IsNewObj(res2)) delete arg2; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomGBForce_addParticle(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:54966:25: note: declared here 54966 | std::vector< double > v2 ; | ^~ In function ‘PyObject* _wrap_CustomExternalForce_setParticleParameters__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomExternalForce_setParticleParameters(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:53807:75: src/swig_doxygen/OpenMMSwig.cxx:53702:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 53702 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomExternalForce_setParticleParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:53664:25: note: declared here 53664 | std::vector< double > v4 ; | ^~ In function ‘PyObject* _wrap_CustomExternalForce_addParticle__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomExternalForce_addParticle(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:53579:63: src/swig_doxygen/OpenMMSwig.cxx:53492:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 53492 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomExternalForce_addParticle(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:53458:25: note: declared here 53458 | std::vector< double > v3 ; | ^~ In function ‘PyObject* _wrap_CustomBondForce_setBondParameters__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomBondForce_setBondParameters(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:46158:69: src/swig_doxygen/OpenMMSwig.cxx:46034:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v5’ [-Wfree-nonheap-object] 46034 | if (SWIG_IsNewObj(res5)) delete arg5; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomBondForce_setBondParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:45991:25: note: declared here 45991 | std::vector< double > v5 ; | ^~ In function ‘PyObject* _wrap_CustomBondForce_addBond__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomBondForce_addBond(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:45892:57: src/swig_doxygen/OpenMMSwig.cxx:45786:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 45786 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomBondForce_addBond(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:45747:25: note: declared here 45747 | std::vector< double > v4 ; | ^~ In function ‘PyObject* _wrap_CustomAngleForce_setAngleParameters__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomAngleForce_setAngleParameters(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:44788:73: src/swig_doxygen/OpenMMSwig.cxx:44645:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v6’ [-Wfree-nonheap-object] 44645 | if (SWIG_IsNewObj(res6)) delete arg6; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomAngleForce_setAngleParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:44597:25: note: declared here 44597 | std::vector< double > v6 ; | ^~ In function ‘PyObject* _wrap_CustomAngleForce_addAngle__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomAngleForce_addAngle(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:44484:61: src/swig_doxygen/OpenMMSwig.cxx:44359:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v5’ [-Wfree-nonheap-object] 44359 | if (SWIG_IsNewObj(res5)) delete arg5; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomAngleForce_addAngle(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:44315:25: note: declared here 44315 | std::vector< double > v5 ; | ^~ In function ‘PyObject* _wrap_new_Continuous3DFunction__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_Continuous3DFunction(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:43073:70: src/swig_doxygen/OpenMMSwig.cxx:42985:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 42985 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Continuous3DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:42862:25: note: declared here 42862 | std::vector< double > v4 ; | ^~ In function ‘PyObject* _wrap_new_Continuous3DFunction__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_Continuous3DFunction(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:43073:70: src/swig_doxygen/OpenMMSwig.cxx:42988:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 42988 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Continuous3DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:42862:25: note: declared here 42862 | std::vector< double > v4 ; | ^~ In function ‘PyObject* _wrap_new_Continuous3DFunction__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_Continuous3DFunction(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:43162:72: src/swig_doxygen/OpenMMSwig.cxx:42836:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 42836 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Continuous3DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:42706:25: note: declared here 42706 | std::vector< double > v4 ; | ^~ In function ‘PyObject* _wrap_new_Continuous3DFunction__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_Continuous3DFunction(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:43162:72: src/swig_doxygen/OpenMMSwig.cxx:42839:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 42839 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Continuous3DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:42706:25: note: declared here 42706 | std::vector< double > v4 ; | ^~ In function ‘PyObject* _wrap_new_Continuous2DFunction__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_Continuous2DFunction(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:42264:64: src/swig_doxygen/OpenMMSwig.cxx:42197:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 42197 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Continuous2DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:42107:25: note: declared here 42107 | std::vector< double > v3 ; | ^~ In function ‘PyObject* _wrap_new_Continuous2DFunction__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_Continuous2DFunction(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:42264:64: src/swig_doxygen/OpenMMSwig.cxx:42200:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 42200 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Continuous2DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:42107:25: note: declared here 42107 | std::vector< double > v3 ; | ^~ In function ‘PyObject* _wrap_new_Continuous2DFunction__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_Continuous2DFunction(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:42329:66: src/swig_doxygen/OpenMMSwig.cxx:42086:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 42086 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Continuous2DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:41989:25: note: declared here 41989 | std::vector< double > v3 ; | ^~ In function ‘PyObject* _wrap_new_Continuous2DFunction__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_Continuous2DFunction(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:42329:66: src/swig_doxygen/OpenMMSwig.cxx:42089:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 42089 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Continuous2DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:41989:25: note: declared here 41989 | std::vector< double > v3 ; | ^~ In function ‘PyObject* _wrap_new_Continuous1DFunction__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_Continuous1DFunction(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:41672:56: src/swig_doxygen/OpenMMSwig.cxx:41631:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v1’ [-Wfree-nonheap-object] 41631 | if (SWIG_IsNewObj(res1)) delete arg1; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Continuous1DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:41579:25: note: declared here 41579 | std::vector< double > v1 ; | ^~ In function ‘PyObject* _wrap_new_Continuous1DFunction__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_Continuous1DFunction(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:41672:56: src/swig_doxygen/OpenMMSwig.cxx:41634:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v1’ [-Wfree-nonheap-object] 41634 | if (SWIG_IsNewObj(res1)) delete arg1; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Continuous1DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:41579:25: note: declared here 41579 | std::vector< double > v1 ; | ^~ In function ‘PyObject* _wrap_new_Continuous1DFunction__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_Continuous1DFunction(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:41707:58: src/swig_doxygen/OpenMMSwig.cxx:41566:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v1’ [-Wfree-nonheap-object] 41566 | if (SWIG_IsNewObj(res1)) delete arg1; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Continuous1DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:41507:25: note: declared here 41507 | std::vector< double > v1 ; | ^~ In function ‘PyObject* _wrap_new_Continuous1DFunction__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_Continuous1DFunction(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:41707:58: src/swig_doxygen/OpenMMSwig.cxx:41569:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v1’ [-Wfree-nonheap-object] 41569 | if (SWIG_IsNewObj(res1)) delete arg1; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_Continuous1DFunction(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:41507:25: note: declared here 41507 | std::vector< double > v1 ; | ^~ In function ‘PyObject* _wrap_new_LocalCoordinatesSite__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_LocalCoordinatesSite(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:81934:60: src/swig_doxygen/OpenMMSwig.cxx:81589:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v2’ [-Wfree-nonheap-object] 81589 | if (SWIG_IsNewObj(res2)) delete arg2; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_LocalCoordinatesSite(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:81522:25: note: declared here 81522 | std::vector< double > v2 ; | ^~ In function ‘PyObject* _wrap_new_LocalCoordinatesSite__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_LocalCoordinatesSite(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:81934:60: src/swig_doxygen/OpenMMSwig.cxx:81590:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 81590 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_LocalCoordinatesSite(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:81524:25: note: declared here 81524 | std::vector< double > v3 ; | ^~ In function ‘PyObject* _wrap_new_LocalCoordinatesSite__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_new_LocalCoordinatesSite(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:81934:60: src/swig_doxygen/OpenMMSwig.cxx:81591:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 81591 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_new_LocalCoordinatesSite(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:81526:25: note: declared here 81526 | std::vector< double > v4 ; | ^~ In function ‘PyObject* _wrap_CustomCompoundBondForce_setBondParameters__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomCompoundBondForce_setBondParameters(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:49837:75: src/swig_doxygen/OpenMMSwig.cxx:49728:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 49728 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomCompoundBondForce_setBondParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:49683:25: note: declared here 49683 | std::vector< double > v4 ; | ^~ In function ‘PyObject* _wrap_CustomCompoundBondForce_addBond__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomCompoundBondForce_addBond(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:49599:63: src/swig_doxygen/OpenMMSwig.cxx:49508:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 49508 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomCompoundBondForce_addBond(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:49467:25: note: declared here 49467 | std::vector< double > v3 ; | ^~ In function ‘PyObject* _wrap_CustomCentroidBondForce_setBondParameters__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomCentroidBondForce_setBondParameters(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:48043:75: src/swig_doxygen/OpenMMSwig.cxx:47934:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 47934 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomCentroidBondForce_setBondParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:47889:25: note: declared here 47889 | std::vector< double > v4 ; | ^~ In function ‘PyObject* _wrap_CustomCentroidBondForce_addBond__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomCentroidBondForce_addBond(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:47805:63: src/swig_doxygen/OpenMMSwig.cxx:47714:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 47714 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomCentroidBondForce_addBond(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:47673:25: note: declared here 47673 | std::vector< double > v3 ; | ^~ In function ‘PyObject* _wrap_CustomCentroidBondForce_setGroupParameters__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomCentroidBondForce_setGroupParameters(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:47649:76: src/swig_doxygen/OpenMMSwig.cxx:47540:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v4’ [-Wfree-nonheap-object] 47540 | if (SWIG_IsNewObj(res4)) delete arg4; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomCentroidBondForce_setGroupParameters(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:47495:25: note: declared here 47495 | std::vector< double > v4 ; | ^~ In function ‘PyObject* _wrap_CustomCentroidBondForce_addGroup__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’, inlined from ‘PyObject* _wrap_CustomCentroidBondForce_addGroup(PyObject*, PyObject*)’ at src/swig_doxygen/OpenMMSwig.cxx:47411:64: src/swig_doxygen/OpenMMSwig.cxx:47320:35: warning: ‘void operator delete(void*)’ called on unallocated object ‘v3’ [-Wfree-nonheap-object] 47320 | if (SWIG_IsNewObj(res3)) delete arg3; | ^~~~ src/swig_doxygen/OpenMMSwig.cxx: In function ‘PyObject* _wrap_CustomCentroidBondForce_addGroup(PyObject*, PyObject*)’: src/swig_doxygen/OpenMMSwig.cxx:47279:25: note: declared here 47279 | std::vector< double > v3 ; | ^~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/src/swig_doxygen/OpenMMSwig.o -L/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu -Wl,--enable-new-dtags,-R/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu -lOpenMM -lOpenMMAmoeba -lOpenMMRPMD -lOpenMMDrude -o build/lib.linux-x86_64-3.10/openmm/_openmm.cpython-310-x86_64-linux-gnu.so building 'openmm.app.internal.compiled' extension creating build/temp.linux-x86_64-3.10/openmm creating build/temp.linux-x86_64-3.10/openmm/app creating build/temp.linux-x86_64-3.10/openmm/app/internal x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c openmm/app/internal/compiled.cpp -o build/temp.linux-x86_64-3.10/openmm/app/internal/compiled.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/openmm-LB2V4D/openmm-7.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/openmm/app/internal/compiled.o -o build/lib.linux-x86_64-3.10/openmm/app/internal/compiled.cpython-310-x86_64-linux-gnu.so make[1]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake debian/rules override_dh_auto_install make[1]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg' dh_auto_install -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j10 install DESTDIR=/build/openmm-LB2V4D/openmm-7.7.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/openmm-LB2V4D/openmm-7.7.0+dfsg -B/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/bin/TestReferenceHarmonicBondForce -- Set runtime path of "/build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/bin/TestReferenceHarmonicBondForce" to "" -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/AlignedArray.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuBondForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuCustomGBForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuCustomManyParticleForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuCustomNonbondedForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuGBSAOBCForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuGayBerneForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuKernelFactory.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuKernels.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuLangevinDynamics.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuLangevinMiddleDynamics.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuNeighborList.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuNonbondedForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuNonbondedForceFvec.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuPlatform.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuRandom.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/CpuSETTLE.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/cpu/windowsExportCpu.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMCPU.so -- Set runtime path of "/build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMCPU.so" to "" -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMAmoebaReference.so -- Set runtime path of "/build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMAmoebaReference.so" to "" -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/OpenMMAmoeba.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/AmoebaGeneralizedKirkwoodForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/AmoebaMultipoleForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/AmoebaTorsionTorsionForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/AmoebaVdwForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/AmoebaWcaDispersionForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/HippoNonbondedForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/amoebaKernels.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaGeneralizedKirkwoodForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaMultipoleForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaTorsionTorsionForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaVdwForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/AmoebaWcaDispersionForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/HippoNonbondedForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/windowsExportAmoeba.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/libOpenMMAmoeba.so -- Set runtime path of "/build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/libOpenMMAmoeba.so" to "" -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMRPMDReference.so -- Set runtime path of "/build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMRPMDReference.so" to "" -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/RPMDIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/RPMDMonteCarloBarostat.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/RPMDUpdater.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/RpmdKernels.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/RPMDMonteCarloBarostatImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/windowsExportRpmd.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/libOpenMMRPMD.so -- Set runtime path of "/build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/libOpenMMRPMD.so" to "" -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMDrudeReference.so -- Set runtime path of "/build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/plugins/libOpenMMDrudeReference.so" to "" -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/OpenMMDrude.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/DrudeForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/DrudeIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/DrudeKernels.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/DrudeLangevinIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/DrudeNoseHooverIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/DrudeSCFIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/DrudeForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/windowsExportDrude.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/libOpenMMDrude.so -- Set runtime path of "/build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/libOpenMMDrude.so" to "" -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/OpenMM.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/Kernel.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/KernelFactory.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/KernelImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/Platform.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/PluginInitializer.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/kernels.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/AndersenThermostat.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/BrownianIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CMAPTorsionForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CMMotionRemover.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CompoundIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/Context.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CustomAngleForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CustomBondForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CustomCVForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CustomCentroidBondForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CustomCompoundBondForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CustomExternalForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CustomGBForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CustomHbondForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CustomIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CustomManyParticleForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CustomNonbondedForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/CustomTorsionForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/Force.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/GBSAOBCForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/GayBerneForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/HarmonicAngleForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/HarmonicBondForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/Integrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/LangevinIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/LangevinMiddleIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/LocalEnergyMinimizer.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/MonteCarloAnisotropicBarostat.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/MonteCarloBarostat.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/MonteCarloFlexibleBarostat.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/MonteCarloMembraneBarostat.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/NonbondedForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/NoseHooverChain.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/NoseHooverIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/OpenMMException.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/PeriodicTorsionForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/RBTorsionForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/RMSDForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/State.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/System.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/TabulatedFunction.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/Units.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/VariableLangevinIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/VariableVerletIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/Vec3.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/VerletIntegrator.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/VirtualSite.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/AndersenThermostatImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/AssertionUtilities.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CMAPTorsionForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CMMotionRemoverImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CompiledExpressionSet.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/ContextImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomAngleForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomBondForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomCVForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomCentroidBondForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomCompoundBondForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomExternalForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomGBForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomHbondForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomIntegratorUtilities.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomManyParticleForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomNonbondedForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/CustomTorsionForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/ForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/GBSAOBCForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/GayBerneForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/HarmonicAngleForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/HarmonicBondForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/MSVC_erfc.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/MonteCarloAnisotropicBarostatImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/MonteCarloBarostatImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/MonteCarloFlexibleBarostatImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/MonteCarloMembraneBarostatImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/NonbondedForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/OSRngSeed.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/PeriodicTorsionForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/RBTorsionForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/RMSDForceImpl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/SplineFitter.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/ThreadPool.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/VectorExpression.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/hardware.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/timer.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorize.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorizeAvx.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorizeAvx2.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorize_neon.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorize_pnacl.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorize_ppc.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/vectorize_sse.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/internal/windowsExport.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ObcParameters.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/RealVec.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceAndersenThermostat.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceAngleBondIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceBondForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceBondIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceBrownianDynamics.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCCMAAlgorithm.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCMAPTorsionIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceConstraintAlgorithm.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceConstraints.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomAngleIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomBondIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomCVForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomCentroidBondIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomCompoundBondIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomDynamics.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomExternalIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomGBIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomHbondIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomManyParticleIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomNonbondedIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceCustomTorsionIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceDynamics.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceGayBerneForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceHarmonicBondIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceKernelFactory.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceKernels.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceLJCoulomb14.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceLJCoulombIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceLangevinMiddleDynamics.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceLincsAlgorithm.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceMonteCarloBarostat.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceNeighborList.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceNoseHooverChain.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceNoseHooverDynamics.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceObc.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferencePME.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferencePairIxn.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferencePlatform.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferencePointFunctions.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceProperDihedralBond.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceRMSDForce.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceRbDihedralBond.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceSETTLEAlgorithm.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceStochasticDynamics.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceTabulatedFunction.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceVariableStochasticDynamics.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceVariableVerletDynamics.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceVerletDynamics.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/ReferenceVirtualSites.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/SimTKOpenMMRealType.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/SimTKOpenMMUtilities.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/reference/fftpack.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/lepton/CompiledExpression.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/lepton/CustomFunction.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/lepton/Exception.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/lepton/ExpressionProgram.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/lepton/ExpressionTreeNode.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/lepton/Operation.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/lepton/ParsedExpression.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/lepton/Parser.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/lepton/windowsIncludes.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/sfmt/SFMT.h -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/include/openmm/serialization/SerializationNode.h -- 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/build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/HelloWaterBox.cpp -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/HelloArgonInC.c -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/HelloSodiumChlorideInC.c -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/HelloArgonInFortran.f90 -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/HelloSodiumChlorideInFortran.f90 -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/simulateAmber.py -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/simulatePdb.py -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/simulateGromacs.py -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/benchmark.py -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/argon-chemical-potential.py -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/input.inpcrd -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/input.prmtop -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/input.pdb -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/input.gro -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/input.top -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/5dfr_minimized.pdb -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/5dfr_solv-cube_equil.pdb -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/apoa1.pdb -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/VisualStudio/HelloArgon.vcproj -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/VisualStudio/HelloArgon.sln -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/VisualStudio/HelloArgonInC.sln -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/VisualStudio/HelloArgonInC.vcproj -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/VisualStudio/HelloArgonInFortran.sln -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/VisualStudio/HelloArgonInFortran.vfproj -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/README.txt -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/Makefile -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/NMakefile -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/MakefileNotes.txt -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/examples/Empty.cpp -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/libOpenMM.so.7.7 -- Installing: /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/libOpenMM.so make[2]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu' dh_install -plibopenmm7.7 debian/tmp/usr/lib/libOpenMM.so.* usr/lib/x86_64-linux-gnu dh_install -plibopenmm-dev debian/tmp/usr/lib/libOpenMMAmoeba.so usr/lib/x86_64-linux-gnu/openmm dh_install -plibopenmm-dev debian/tmp/usr/lib/libOpenMMDrude.so usr/lib/x86_64-linux-gnu/openmm dh_install -plibopenmm-dev debian/tmp/usr/lib/libOpenMMRPMD.so usr/lib/x86_64-linux-gnu/openmm dh_install -plibopenmm-dev debian/tmp/usr/lib/libOpenMM.so usr/lib/x86_64-linux-gnu dh_install -plibopenmm-plugins debian/tmp/usr/lib/plugins usr/lib/x86_64-linux-gnu/openmm cd obj-*/python && python3 setup.py install --install-layout=deb --root=/build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp /build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu/python/setup.py:10: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup author Peter Eastman data_files [] description Python wrapper for OpenMM (a C++ MD package) download_url https://openmm.org ext_modules[, ] license Python Software Foundation License (BSD-like) long_descriptionOpenMM is a toolkit for molecular simulation. It can be used either as a stand-alone application for running simulations, or as a library you call from your own code. It provides a combination of extreme flexibility (through custom forces and integrators), openness, and high performance (especially on recent GPUs) that make it truly unique among simulation codes. name OpenMM package_data{'openmm': [], 'openmm.app': ['data/*.xml', 'data/*.pdb', 'data/amber14/*.xml', 'data/charmm36/*.xml', 'data/implicit/*.xml'], 'openmm.app.internal': []} packages['simtk', 'simtk.unit', 'simtk.openmm', 'simtk.openmm.app', 'openmm', 'openmm.unit', 'openmm', 'openmm.app', 'openmm.app.internal', 'openmm.app.internal.charmm', 'openmm.app.internal.pdbx', 'openmm.app.internal.pdbx.reader', 'openmm.app.internal.pdbx.writer'] platforms ['Linux', 'Mac OS X', 'Windows'] url https://openmm.org version 7.7.0 running install running build running build_py copying openmm/version.py -> build/lib.linux-x86_64-3.10/openmm running build_ext running install_lib creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3 creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/simtk copying build/lib.linux-x86_64-3.10/simtk/__init__.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/simtk creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/simtk/unit copying build/lib.linux-x86_64-3.10/simtk/unit/__init__.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/simtk/unit creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/simtk/openmm copying build/lib.linux-x86_64-3.10/simtk/openmm/__init__.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/simtk/openmm creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/simtk/openmm/app copying build/lib.linux-x86_64-3.10/simtk/openmm/app/__init__.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/simtk/openmm/app creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm copying build/lib.linux-x86_64-3.10/openmm/__init__.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm copying build/lib.linux-x86_64-3.10/openmm/amd.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm copying build/lib.linux-x86_64-3.10/openmm/mtsintegrator.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm copying build/lib.linux-x86_64-3.10/openmm/testInstallation.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm copying build/lib.linux-x86_64-3.10/openmm/vec3.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm copying build/lib.linux-x86_64-3.10/openmm/openmm.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/__init__.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/basedimension.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/baseunit.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/constants.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/doctests.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/mymatrix.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/prefix.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/quantity.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/standard_dimensions.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/unit.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/unit_definitions.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/unit_math.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit copying build/lib.linux-x86_64-3.10/openmm/unit/unit_operators.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/__init__.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/amberinpcrdfile.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/charmmpsffile.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/amberprmtopfile.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/charmmparameterset.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/checkpointreporter.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/charmmcrdfiles.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/dcdfile.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/dcdreporter.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/desmonddmsfile.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/element.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/forcefield.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/gromacsgrofile.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/gromacstopfile.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/metadynamics.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/modeller.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/pdbfile.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/pdbreporter.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/pdbxfile.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/simulatedtempering.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/simulation.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/statedatareporter.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app copying build/lib.linux-x86_64-3.10/openmm/app/topology.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal copying build/lib.linux-x86_64-3.10/openmm/app/internal/__init__.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal copying build/lib.linux-x86_64-3.10/openmm/app/internal/amber_file_parser.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal copying build/lib.linux-x86_64-3.10/openmm/app/internal/argtracker.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal copying build/lib.linux-x86_64-3.10/openmm/app/internal/customgbforces.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal copying build/lib.linux-x86_64-3.10/openmm/app/internal/pdbstructure.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal copying build/lib.linux-x86_64-3.10/openmm/app/internal/singleton.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal copying build/lib.linux-x86_64-3.10/openmm/app/internal/unitcell.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/charmm copying build/lib.linux-x86_64-3.10/openmm/app/internal/charmm/__init__.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/charmm copying build/lib.linux-x86_64-3.10/openmm/app/internal/charmm/_charmmfile.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/charmm copying build/lib.linux-x86_64-3.10/openmm/app/internal/charmm/exceptions.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/charmm copying build/lib.linux-x86_64-3.10/openmm/app/internal/charmm/topologyobjects.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/charmm creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx copying build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/__init__.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader copying build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader/PdbxContainers.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader copying build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader/PdbxParser.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader copying build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader copying build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader/PdbxReader.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader copying build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader/PdbxReaderTests.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader copying build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/reader/__init__.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/writer copying build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/writer/PdbxWriter.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/writer copying build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/writer/PdbxWriterTests.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/writer copying build/lib.linux-x86_64-3.10/openmm/app/internal/pdbx/writer/__init__.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/writer copying build/lib.linux-x86_64-3.10/openmm/app/internal/compiled.cpython-310-x86_64-linux-gnu.so -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/absinth.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amber03.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amber03_obc.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amber10.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amber10_obc.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14-all.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amber96.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amber99Test.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amber96_obc.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amber99sb.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amber99_obc.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amber99sbildn.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amber99sbnmr.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amberfb15.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amoeba2009.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amoeba2009_gk.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amoeba2013.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amoeba2013_gk.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amoeba2018_gk.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/amoeba2018.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/charmm36.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/charmm_polar_2013.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/glycam-hydrogens.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/charmm_polar_2019.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/hydrogens.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/iamoeba.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/pdbNames.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/residues.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/spce.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/swm4ndp.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/tip3p.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/tip3pfb.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/tip4pew.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/tip4pfb.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/tip5p.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/DLPE.pdb -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/DOPC.pdb -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/DMPC.pdb -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/DPPC.pdb -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/DLPC.pdb -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/POPC.pdb -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/POPE.pdb -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/spce.pdb -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/test.pdb -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/tip3p.pdb -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/tip4pew.pdb -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data copying build/lib.linux-x86_64-3.10/openmm/app/data/tip5p.pdb -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14/DNA.OL15.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14/GLYCAM_06j-1.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14/RNA.OL3.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14/DNA.bsc1.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14/protein.ff14SB.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14/lipid17.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14/protein.ff15ipq.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14/tip3p.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14/spce.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14/tip4pew.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14/tip4pfb.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 copying build/lib.linux-x86_64-3.10/openmm/app/data/amber14/tip3pfb.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/amber14 creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/charmm36 copying build/lib.linux-x86_64-3.10/openmm/app/data/charmm36/spce.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/charmm36 copying build/lib.linux-x86_64-3.10/openmm/app/data/charmm36/tip3p-pme-b.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/charmm36 copying build/lib.linux-x86_64-3.10/openmm/app/data/charmm36/tip3p-pme-f.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/charmm36 copying build/lib.linux-x86_64-3.10/openmm/app/data/charmm36/tip4p2005.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/charmm36 copying build/lib.linux-x86_64-3.10/openmm/app/data/charmm36/tip4pew.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/charmm36 copying build/lib.linux-x86_64-3.10/openmm/app/data/charmm36/tip5pew.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/charmm36 copying build/lib.linux-x86_64-3.10/openmm/app/data/charmm36/tip5p.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/charmm36 copying build/lib.linux-x86_64-3.10/openmm/app/data/charmm36/water.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/charmm36 creating /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/implicit copying build/lib.linux-x86_64-3.10/openmm/app/data/implicit/gbn.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/implicit copying build/lib.linux-x86_64-3.10/openmm/app/data/implicit/gbn2.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/implicit copying build/lib.linux-x86_64-3.10/openmm/app/data/implicit/hct.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/implicit copying build/lib.linux-x86_64-3.10/openmm/app/data/implicit/obc1.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/implicit copying build/lib.linux-x86_64-3.10/openmm/app/data/implicit/obc2.xml -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/data/implicit copying build/lib.linux-x86_64-3.10/openmm/_openmm.cpython-310-x86_64-linux-gnu.so -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm copying build/lib.linux-x86_64-3.10/openmm/version.py -> /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/simtk/__init__.py to __init__.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/simtk/unit/__init__.py to __init__.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/simtk/openmm/__init__.py to __init__.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/simtk/openmm/app/__init__.py to __init__.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/__init__.py to __init__.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/amd.py to amd.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/mtsintegrator.py to mtsintegrator.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/testInstallation.py to testInstallation.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/vec3.py to vec3.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/openmm.py to openmm.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/__init__.py to __init__.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/basedimension.py to basedimension.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/baseunit.py to baseunit.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/constants.py to constants.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/doctests.py to doctests.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/mymatrix.py to mymatrix.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/prefix.py to prefix.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/quantity.py to quantity.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/standard_dimensions.py to standard_dimensions.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/unit.py to unit.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/unit_definitions.py to unit_definitions.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/unit_math.py to unit_math.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/unit/unit_operators.py to unit_operators.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/__init__.py to __init__.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/amberinpcrdfile.py to amberinpcrdfile.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/charmmpsffile.py to charmmpsffile.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/amberprmtopfile.py to amberprmtopfile.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/charmmparameterset.py to charmmparameterset.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/checkpointreporter.py to checkpointreporter.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/charmmcrdfiles.py to charmmcrdfiles.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/dcdfile.py to dcdfile.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/dcdreporter.py to dcdreporter.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/desmonddmsfile.py to desmonddmsfile.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/element.py to element.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/forcefield.py to forcefield.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/gromacsgrofile.py to gromacsgrofile.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/gromacstopfile.py to gromacstopfile.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/metadynamics.py to metadynamics.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/modeller.py to modeller.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/pdbfile.py to pdbfile.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/pdbreporter.py to pdbreporter.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/pdbxfile.py to pdbxfile.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/simulatedtempering.py to simulatedtempering.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/simulation.py to simulation.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/statedatareporter.py to statedatareporter.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/topology.py to topology.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/__init__.py to __init__.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/amber_file_parser.py to amber_file_parser.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/argtracker.py to argtracker.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/customgbforces.py to customgbforces.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py to pdbstructure.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/singleton.py to singleton.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/unitcell.py to unitcell.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/charmm/__init__.py to __init__.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/charmm/_charmmfile.py to _charmmfile.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/charmm/exceptions.py to exceptions.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/charmm/topologyobjects.py to topologyobjects.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/__init__.py to __init__.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxContainers.py to PdbxContainers.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py to PdbxParser.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py to PdbxReadWriteTests.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py to PdbxReader.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReaderTests.py to PdbxReaderTests.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/__init__.py to __init__.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/writer/PdbxWriter.py to PdbxWriter.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/writer/PdbxWriterTests.py to PdbxWriterTests.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/app/internal/pdbx/writer/__init__.py to __init__.cpython-310.pyc byte-compiling /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/openmm/version.py to version.cpython-310.pyc running install_egg_info Writing /build/openmm-LB2V4D/openmm-7.7.0+dfsg/debian/tmp/usr/lib/python3/dist-packages/OpenMM-7.7.0.egg-info make[1]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg' dh_install -a -O--buildsystem=cmake dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake debian/rules override_dh_python3 make[1]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg' dh_python3 find debian/python3-simtk -name '*.py' \ | xargs sed -i 's/^#!\/bin\/env python/#!\/usr\/bin\/python3/' find debian/python3-simtk -name __pycache__ \ | xargs rm -rf find debian/python3-simtk -name '_openmm.*.so' \ | xargs chrpath --replace /usr/lib/x86_64-linux-gnu/openmm debian/python3-simtk/usr/lib/python3/dist-packages/openmm/_openmm.cpython-310-x86_64-linux-gnu.so: RUNPATH=/build/openmm-LB2V4D/openmm-7.7.0+dfsg/obj-x86_64-linux-gnu debian/python3-simtk/usr/lib/python3/dist-packages/openmm/_openmm.cpython-310-x86_64-linux-gnu.so: new RUNPATH: /usr/lib/x86_64-linux-gnu/openmm make[1]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg' dh_installsystemduser -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake dh_fixperms -a -O--buildsystem=cmake dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dwz: debian/python3-simtk/usr/lib/python3/dist-packages/openmm/_openmm.cpython-310-x86_64-linux-gnu.so: DWARF compression not beneficial - old size 8268356 new size 8276822 dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg' dh_shlibdeps --dpkg-shlibdeps-params=--ignore-missing-info dpkg-shlibdeps: warning: cannot find library libOpenMMAmoeba.so needed by debian/python3-simtk/usr/lib/python3/dist-packages/openmm/_openmm.cpython-310-x86_64-linux-gnu.so (ELF format: 'elf64-x86-64' abi: '0201003e00000000'; RPATH: '/usr/lib/x86_64-linux-gnu/openmm') dpkg-shlibdeps: warning: cannot find library libOpenMMRPMD.so needed by debian/python3-simtk/usr/lib/python3/dist-packages/openmm/_openmm.cpython-310-x86_64-linux-gnu.so (ELF format: 'elf64-x86-64' abi: '0201003e00000000'; RPATH: '/usr/lib/x86_64-linux-gnu/openmm') dpkg-shlibdeps: warning: cannot find library libOpenMMDrude.so needed by debian/python3-simtk/usr/lib/python3/dist-packages/openmm/_openmm.cpython-310-x86_64-linux-gnu.so (ELF format: 'elf64-x86-64' abi: '0201003e00000000'; RPATH: '/usr/lib/x86_64-linux-gnu/openmm') dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libopenmm-dev/usr/lib/x86_64-linux-gnu/openmm/libOpenMMDrude.so debian/libopenmm-dev/usr/lib/x86_64-linux-gnu/openmm/libOpenMMAmoeba.so debian/libopenmm-dev/usr/lib/x86_64-linux-gnu/openmm/libOpenMMRPMD.so were not linked against librt.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: cannot find library libOpenMMAmoeba.so needed by debian/libopenmm-plugins/usr/lib/x86_64-linux-gnu/openmm/plugins/libOpenMMAmoebaReference.so (ELF format: 'elf64-x86-64' abi: '0201003e00000000'; RPATH: '') dpkg-shlibdeps: warning: cannot find library libOpenMMDrude.so needed by debian/libopenmm-plugins/usr/lib/x86_64-linux-gnu/openmm/plugins/libOpenMMDrudeReference.so (ELF format: 'elf64-x86-64' abi: '0201003e00000000'; RPATH: '') dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libopenmm-plugins/usr/lib/x86_64-linux-gnu/openmm/plugins/libOpenMMCPU.so debian/libopenmm-plugins/usr/lib/x86_64-linux-gnu/openmm/plugins/libOpenMMAmoebaReference.so debian/libopenmm-plugins/usr/lib/x86_64-linux-gnu/openmm/plugins/libOpenMMDrudeReference.so debian/libopenmm-plugins/usr/lib/x86_64-linux-gnu/openmm/plugins/libOpenMMRPMDReference.so were not linked against librt.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libopenmm7.7/usr/lib/x86_64-linux-gnu/libOpenMM.so.7.7 was not linked against librt.so.1 (it uses none of the library's symbols) make[1]: Leaving directory '/build/openmm-LB2V4D/openmm-7.7.0+dfsg' dh_installdeb -a -O--buildsystem=cmake dh_numpy3 -a -O--buildsystem=cmake dh_gencontrol -a -O--buildsystem=cmake dpkg-gencontrol: warning: package python3-simtk: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package libopenmm-plugins: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libopenmm-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libopenmm7.7: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libopenmm-plugins: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python3-simtk: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package libopenmm-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libopenmm7.7: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'libopenmm-plugins-dbgsym' in '../libopenmm-plugins-dbgsym_7.7.0+dfsg-5_amd64.deb'. dpkg-deb: building package 'python3-simtk-dbgsym' in '../python3-simtk-dbgsym_7.7.0+dfsg-5_amd64.deb'. dpkg-deb: building package 'libopenmm-dev' in '../libopenmm-dev_7.7.0+dfsg-5_amd64.deb'. dpkg-deb: building package 'libopenmm-plugins' in '../libopenmm-plugins_7.7.0+dfsg-5_amd64.deb'. dpkg-deb: building package 'libopenmm7.7' in '../libopenmm7.7_7.7.0+dfsg-5_amd64.deb'. dpkg-deb: building package 'libopenmm7.7-dbgsym' in '../libopenmm7.7-dbgsym_7.7.0+dfsg-5_amd64.deb'. dpkg-deb: building package 'python3-simtk' in '../python3-simtk_7.7.0+dfsg-5_amd64.deb'. dpkg-deb: building package 'libopenmm-dev-dbgsym' in '../libopenmm-dev-dbgsym_7.7.0+dfsg-5_amd64.deb'. dpkg-genbuildinfo --build=any -O../openmm_7.7.0+dfsg-5_amd64.buildinfo dpkg-genchanges --build=any -O../openmm_7.7.0+dfsg-5_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/openmm-LB2V4D /tmp/openmm-7.7.0+dfsg-5g8xkuumv I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.egtT_8UsLr... I: success in 1070.2768 seconds md5: libopenmm-dev-dbgsym_7.7.0+dfsg-5_amd64.deb: OK md5: libopenmm-dev_7.7.0+dfsg-5_amd64.deb: OK md5: libopenmm-plugins-dbgsym_7.7.0+dfsg-5_amd64.deb: OK md5: libopenmm-plugins_7.7.0+dfsg-5_amd64.deb: OK md5: libopenmm7.7-dbgsym_7.7.0+dfsg-5_amd64.deb: OK md5: libopenmm7.7_7.7.0+dfsg-5_amd64.deb: OK md5: Value of 'md5' differs for python3-simtk-dbgsym_7.7.0+dfsg-5_amd64.deb md5: Size differs for python3-simtk-dbgsym_7.7.0+dfsg-5_amd64.deb md5: Value of 'md5' differs for python3-simtk_7.7.0+dfsg-5_amd64.deb md5: Size differs for python3-simtk_7.7.0+dfsg-5_amd64.deb sha1: libopenmm-dev-dbgsym_7.7.0+dfsg-5_amd64.deb: OK sha1: libopenmm-dev_7.7.0+dfsg-5_amd64.deb: OK sha1: libopenmm-plugins-dbgsym_7.7.0+dfsg-5_amd64.deb: OK sha1: libopenmm-plugins_7.7.0+dfsg-5_amd64.deb: OK sha1: libopenmm7.7-dbgsym_7.7.0+dfsg-5_amd64.deb: OK sha1: libopenmm7.7_7.7.0+dfsg-5_amd64.deb: OK sha1: Value of 'sha1' differs for python3-simtk-dbgsym_7.7.0+dfsg-5_amd64.deb sha1: Size differs for python3-simtk-dbgsym_7.7.0+dfsg-5_amd64.deb sha1: Value of 'sha1' differs for python3-simtk_7.7.0+dfsg-5_amd64.deb sha1: Size differs for python3-simtk_7.7.0+dfsg-5_amd64.deb sha256: libopenmm-dev-dbgsym_7.7.0+dfsg-5_amd64.deb: OK sha256: libopenmm-dev_7.7.0+dfsg-5_amd64.deb: OK sha256: libopenmm-plugins-dbgsym_7.7.0+dfsg-5_amd64.deb: OK sha256: libopenmm-plugins_7.7.0+dfsg-5_amd64.deb: OK sha256: libopenmm7.7-dbgsym_7.7.0+dfsg-5_amd64.deb: OK sha256: libopenmm7.7_7.7.0+dfsg-5_amd64.deb: OK sha256: Value of 'sha256' differs for python3-simtk-dbgsym_7.7.0+dfsg-5_amd64.deb sha256: Size differs for python3-simtk-dbgsym_7.7.0+dfsg-5_amd64.deb sha256: Value of 'sha256' differs for python3-simtk_7.7.0+dfsg-5_amd64.deb sha256: Size differs for python3-simtk_7.7.0+dfsg-5_amd64.deb Checksums: FAIL Cannot generate diffoscope for python3-simtk-dbgsym_7.7.0+dfsg-5_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/d9438d3b0a7e3e473b30774ff4fd2eb8a38eae44e2b9c6bd63eb2aeb5319e46c/download Cannot generate diffoscope for python3-simtk_7.7.0+dfsg-5_amd64.deb: RetryError[]