Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/o/octave-bim/octave-bim_1.1.5-7_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/octave-bim-1.1.5-7jw58a_hv/octave-bim_1.1.5-7_all.buildinfo Get source package info: octave-bim=1.1.5-7 Source URL: http://snapshot.notset.fr/mr/package/octave-bim/1.1.5-7/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 aglfn=1.7+git20191031.4036a9c-2 autoconf=2.69-11.1 automake=1:1.16.2-3 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-6 binutils=2.35-1 binutils-common=2.35-1 binutils-x86-64-linux-gnu=2.35-1 bsdextrautils=2.36-1 bsdutils=1:2.35.2-9 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 cme=1.032-1 coreutils=8.32-3 cpp=4:10.1.0-1 cpp-10=10.2.0-3 dash=0.5.10.2-7 debconf=1.5.74 debhelper=13.2 debianutils=4.11 dh-autoreconf=19 dh-octave=0.7.6 dh-octave-autopkgtest=0.7.6 dh-strip-nondeterminism=1.9.0-1 diffstat=1.63-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.38-5 findutils=4.7.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-freefont-otf=20120503-10 g++=4:10.1.0-1 g++-10=10.2.0-3 gcc=4:10.1.0-1 gcc-10=10.2.0-3 gcc-10-base=10.2.0-3 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gfortran=4:10.1.0-1 gfortran-10=10.2.0-3 gmsh=4.6.0+ds1-1 gnuplot-data=5.2.8+dfsg1-2 gnuplot-nox=5.2.8+dfsg1-2 gpg=2.2.20-1 gpgconf=2.2.20-1 grep=3.4-1 groff-base=1.22.4-5 gzip=1.10-2 hdf5-helpers=1.10.6+repack-2 hostname=3.23 ibverbs-providers=29.0-1 init-system-helpers=1.58 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libaec-dev=1.0.4-1 libaec0=1.0.4-1 libalgorithm-c3-perl=0.10-1 libaliased-perl=0.34-1 libamd2=1:5.8.1+dfsg-1 libapp-cmd-perl=0.331-1 libapt-pkg-perl=0.1.36+b3 libapt-pkg6.0=2.1.7 libarchive-zip-perl=1.68-1 libarpack2=3.7.0-3 libarray-intspan-perl=2.004-1 libasan6=10.2.0-3 libasound2=1.2.2-2.3 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libhash-fieldhash-perl=0.15-1+b2 libhash-merge-perl=0.301-1 libhdf5-103-1=1.10.6+repack-2 libhdf5-cpp-103-1=1.10.6+repack-2 libhdf5-dev=1.10.6+repack-2 libhdf5-fortran-102=1.10.6+repack-2 libhdf5-hl-100=1.10.6+repack-2 libhdf5-hl-cpp-100=1.10.6+repack-2 libhdf5-hl-fortran-100=1.10.6+repack-2 libhdf5-openmpi-103-1=1.10.6+repack-2 libhdf5-openmpi-cpp-103-1=1.10.6+repack-2 libhdf5-openmpi-dev=1.10.6+repack-2 libhdf5-openmpi-fortran-102=1.10.6+repack-2 libhdf5-openmpi-hl-100=1.10.6+repack-2 libhdf5-openmpi-hl-cpp-100=1.10.6+repack-2 libhdf5-openmpi-hl-fortran-100=1.10.6+repack-2 libhogweed6=3.6-2 libhtml-parser-perl=3.72-5 libhtml-tagset-perl=3.20-4 libhtml-tree-perl=5.07-2 libhttp-cookies-perl=6.08-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.25-1 libhttp-negotiate-perl=6.01-1 libhwloc-dev=2.2.0+dfsg-3 libhwloc-plugins=2.2.0+dfsg-3 libhwloc15=2.2.0+dfsg-3 libibverbs-dev=29.0-1 libibverbs1=29.0-1 libice6=2:1.0.9-2 libicu67=67.1-3 libidn2-0=2.3.0-1 libilmbase24=2.3.0-6 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libstring-escape-perl=2010.002-2 libstring-rewriteprefix-perl=0.008-1 libstruct-dumb-perl=0.12-1 libsub-exporter-perl=0.987-1 libsub-exporter-progressive-perl=0.001013-1 libsub-identify-perl=0.14-1+b2 libsub-install-perl=0.928-1 libsub-name-perl=0.26-1 libsub-override-perl=0.09-2 libsub-quote-perl=2.006006-1 libsub-uplevel-perl=0.2800-1 libsuitesparseconfig5=1:5.8.1+dfsg-1 libsystemd0=245.6-3 libsz2=1.0.4-1 libtasn1-6=4.16.0-2 libtbb2=2020.2-2 libtest-exception-perl=0.43-1 libtest-metrics-any-perl=0.01-2 libtext-autoformat-perl=1.750000-1 libtext-glob-perl=0.11-1 libtext-levenshtein-damerau-perl=0.41-1 libtext-levenshteinxs-perl=0.03-4+b7 libtext-reform-perl=1.20-3 libtext-template-perl=1.59-1 libtext-unidecode-perl=1.30-1 libtext-xslate-perl=3.5.8-1 libthai-data=0.1.28-3 libthai0=0.1.28-3 libtiff5=4.1.0+git191117-2 libtime-duration-perl=1.21-1 libtime-moment-perl=0.44-1+b2 libtimedate-perl=2.3300-1 libtinfo6=6.2-1 libtool=2.4.6-14 libtry-tiny-perl=0.30-1 libtsan0=10.2.0-3 libtype-tiny-perl=1.010002-1 libubsan1=10.2.0-3 libuchardet0=0.0.7-1 libucx0=1.8.1-2 libudev1=245.6-3 libumfpack5=1:5.8.1+dfsg-1 libunicode-utf8-perl=0.62-1+b1 libunistring2=0.9.10-4 liburi-perl=1.76-2 libuuid1=2.35.2-9 libvariable-magic-perl=0.62-1+b2 libvorbis0a=1.3.6-2 libvorbisenc2=1.3.6-2 libvoro++1=0.4.6+dfsg1-3 libvulkan1=1.2.141.0-1 libwacom-common=1.3-2 libwacom2=1.3-2 libwayland-client0=1.18.0-1 libwayland-server0=1.18.0-1 libwebp6=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libwmf0.2-7=0.2.8.4-17 libwww-perl=6.46-1 libwww-robotrules-perl=6.02-1 libx11-6=2:1.6.9-2+b1 libx11-data=2:1.6.9-2 libx11-dev=2:1.6.9-2+b1 libx11-xcb1=2:1.6.9-2+b1 libxau-dev=1:1.0.8-1+b2 libxau6=1:1.0.8-1+b2 libxcb-dri2-0=1.14-2 libxcb-dri3-0=1.14-2 libxcb-glx0=1.14-2 libxcb-icccm4=0.4.1-1.1 libxcb-image0=0.4.0-1+b2 libxcb-keysyms1=0.4.0-1+b2 libxcb-present0=1.14-2 libxcb-randr0=1.14-2 libxcb-render-util0=0.3.9-1+b1 libxcb-render0=1.14-2 libxcb-shape0=1.14-2 libxcb-shm0=1.14-2 libxcb-sync1=1.14-2 libxcb-util0=0.3.8-3+b2 libxcb-xfixes0=1.14-2 libxcb-xinerama0=1.14-2 libxcb-xinput0=1.14-2 libxcb-xkb1=1.14-2 libxcb1=1.14-2 libxcb1-dev=1.14-2 libxcursor1=1:1.2.0-2 libxdamage1=1:1.1.5-2 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxfixes3=1:5.0.3-2 libxft2=2.3.2-2 libxinerama1=2:1.1.4-2 libxkbcommon-x11-0=0.10.0-1 libxkbcommon0=0.10.0-1 libxml-libxml-perl=2.0134+dfsg-2 libxml-namespacesupport-perl=1.12-1 libxml-sax-base-perl=1.09-1 libxml-sax-perl=1.02+dfsg-1 libxml-writer-perl=0.625-1 libxml2=2.9.10+dfsg-5+b1 libxnvctrl0=450.57-1 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxxf86vm1=1:1.1.4-1+b2 libyaml-0-2=0.2.2-1 libyaml-libyaml-perl=0.82+repack-1 libyaml-perl=1.30-1 libyaml-tiny-perl=1.73-1 libz3-4=4.8.8-1 libzstd1=1.4.5+dfsg-3 licensecheck=3.0.47-1 lintian=2.85.0 linux-libc-dev=5.7.6-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2-1 ncurses-bin=6.2-1 netbase=6.1 ocl-icd-libopencl1=2.2.12-4 octave=5.2.0-3+b1 octave-common=5.2.0-3 octave-msh=1.0.10-8 octave-splines=1.3.3-1 openmpi-bin=4.0.4-2 openmpi-common=4.0.4-2 openssh-client=1:8.3p1-1 openssl=1.1.1g-1 passwd=1:4.8.1-1 patch=2.7.6-6 patchutils=0.4.2-1 perl=5.30.3-4 perl-base=5.30.3-4 perl-modules-5.30=5.30.3-4 perl-openssl-defaults=5 po-debconf=1.0.21 readline-common=8.0-4 sed=4.7-1 sensible-utils=0.0.12+nmu1 shared-mime-info=1.15-1 sysvinit-utils=2.96-3 t1utils=1.41-4 tar=1.30+dfsg-7 tex-common=6.15 texinfo=6.7.0.dfsg.2-5 ucf=3.0043 util-linux=2.35.2-9 x11-common=1:7.7+20 x11proto-core-dev=2020.1-1 x11proto-dev=2020.1-1 xkb-data=2.29-2 xorg-sgml-doctools=1:1.11-1 xtrans-dev=1.4.0-1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200801T150407Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200723T030638Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d octave-bim=1.1.5-7 && mkdir -p /build/octave-bim-v2QSUA && dpkg-source --no-check -x /*.dsc /build/octave-bim-v2QSUA/octave-bim-1.1.5 && chown -R builduser:builduser /build/octave-bim-v2QSUA" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/octave-bim-v2QSUA/octave-bim-1.1.5 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1595260371" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/octave-bim-v2QSUA /tmp/octave-bim-1.1.5-7jw58a_hv bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200723T030638Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.pBPMtASwTQ as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.pBPMtASwTQ Reading package lists... Building dependency tree... util-linux is already the newest version (2.35.2-9). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200723T030638Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200723T030638Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (704 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4579 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-1) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200801T150407Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200723T030638Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.pBPMtASwTQ Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200801T150407Z unstable InRelease [146 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20200723T030638Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20200801T150407Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200801T150407Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200801T150407Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20200801T150407Z unstable/main amd64 Packages [11.3 MB] Fetched 34.0 MB in 30s (1132 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.pBPMtASwTQ I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d octave-bim=1.1.5-7 && mkdir -p /build/octave-bim-v2QSUA && dpkg-source --no-check -x /*.dsc /build/octave-bim-v2QSUA/octave-bim-1.1.5 && chown -R builduser:builduser /build/octave-bim-v2QSUA"' exec /tmp/mmdebstrap.pBPMtASwTQ Reading package lists... NOTICE: 'octave-bim' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/pkg-octave-team/octave-bim.git Please use: git clone https://salsa.debian.org/pkg-octave-team/octave-bim.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 41.1 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main octave-bim 1.1.5-7 (dsc) [2141 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main octave-bim 1.1.5-7 (tar) [34.6 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main octave-bim 1.1.5-7 (diff) [4412 B] Fetched 41.1 kB in 0s (402 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'octave-bim_1.1.5-7.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting octave-bim in /build/octave-bim-v2QSUA/octave-bim-1.1.5 dpkg-source: info: unpacking octave-bim_1.1.5.orig.tar.gz dpkg-source: info: unpacking octave-bim_1.1.5-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying data-file-link-in-tutorial.diff dpkg-source: info: applying add-lacking-semicolon.patch dpkg-source: info: applying xtest-in-bim1c_norm.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/octave-bim-v2QSUA/octave-bim-1.1.5 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1595260371" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.pBPMtASwTQ dpkg-buildpackage: info: source package octave-bim dpkg-buildpackage: info: source version 1.1.5-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Rafael Laboissière dpkg-source --before-build . debian/rules clean dh clean --buildsystem=octave --with=octave dh_auto_clean -O--buildsystem=octave dh_octave_clean make[1]: *** src: No such file or directory. Stop. dh_autoreconf_clean -O--buildsystem=octave dh_clean -O--buildsystem=octave debian/rules binary-indep dh binary-indep --buildsystem=octave --with=octave dh_update_autotools_config -i -O--buildsystem=octave dh_autoreconf -i -O--buildsystem=octave dh_octave_version -i -O--buildsystem=octave Checking the Octave version... ok dh_auto_configure -i -O--buildsystem=octave dh_auto_build -i -O--buildsystem=octave dh_auto_test -i -O--buildsystem=octave create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=octave dh_prep -i -O--buildsystem=octave dh_auto_install -i -O--buildsystem=octave octave --no-gui --no-history --silent --no-init-file --no-window-system /usr/share/dh-octave/install-pkg.m warning: creating installation directory /build/octave-bim-v2QSUA/octave-bim-1.1.5/debian/octave-bim/usr/share/octave/packages warning: called from install at line 30 column 5 pkg at line 441 column 9 /usr/share/dh-octave/install-pkg.m at line 43 column 1 For information about changes from previous versions of the bim package, run 'news bim'. rmdir: failed to remove '/build/octave-bim-v2QSUA/octave-bim-1.1.5/debian/octave-bim/usr/lib/x86_64-linux-gnu/octave/packages': No such file or directory chmod: cannot access 'debian/*/usr/lib/*/octave/packages/*/*/*.oct': No such file or directory chmod: cannot access 'debian/*/usr/lib/*/octave/packages/*/*/*.mex': No such file or directory dh_octave_check -i -O--buildsystem=octave Checking package... Checking m files ... [inst/bim3a_osc_laplacian.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim3a_osc_laplacian.m ***** shared msh, epsilon, M, nnodes, nelem, x, y, z ***** test msh = bim3c_mesh_properties (msh3m_structured_mesh (0:5, 0:5, 0:5, 1, 1:6)); x = msh.p (1, :).'; y = msh.p (2, :).'; z = msh.p (3, :).'; u = ones (size (x)); M = bim3a_osc_laplacian (msh, 1); assert (M * u, zeros (size (u)), eps * 100) ***** test u = x; bnd = bim3c_unknowns_on_faces (msh, [1, 2]); int = setdiff (1:columns (msh.p), bnd); assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) ***** test u = y; bnd = bim3c_unknowns_on_faces (msh, [3, 4]); int = setdiff (1:columns (msh.p), bnd); assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) ***** test u = z; bnd = bim3c_unknowns_on_faces (msh, [5, 6]); int = setdiff (1:columns (msh.p), bnd); assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) ***** test u = z; bnd = bim3c_unknowns_on_faces (msh, [5, 6]); int = setdiff (1:columns (msh.p), bnd); M = bim3a_osc_laplacian (msh, pi); assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) 5 tests, 5 passed, 0 known failure, 0 skipped [inst/bim3c_norm.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim3c_norm.m ***** test ***** shared L, V, x, y, z, m L = rand (1); V = rand (1); x = linspace (0,L,4); y = x; z = x; m = msh3m_structured_mesh (x,y,z,1,1:6); m.area = msh3m_geometrical_properties (m, 'area'); m.shg = msh3m_geometrical_properties (m, 'shg'); u = V * ones (columns(m.p),1); uinf = bim3c_norm (m, u, 'inf'); uL2 = bim3c_norm (m, u, 'L2'); uH1 = bim3c_norm (m, u, 'H1'); assert ([uinf, uL2, uH1], [V, V*sqrt(L^3), V*sqrt(L^3)], 1e-12); ***** test u = V * (m.p(1,:) + 2*m.p(2,:) + 3*m.p(3,:))'; uinf = bim3c_norm (m, u, 'inf'); uL2 = bim3c_norm (m, u, 'L2'); uH1 = bim3c_norm (m, u, 'H1'); assert ([uinf, uL2, uH1], [6*L*V, V*sqrt(61/6*L^5), V*sqrt(61/6*L^5 + 14*L^3)], 1e-12); ***** test u = V * ones (columns(m.t),1); uinf = bim3c_norm (m, u, 'inf'); uL2 = bim3c_norm (m, u, 'L2'); assert ([uinf, uL2], [V, V*sqrt(L^3)], 1e-12); ***** test u = V * ones (columns(m.t),1); uvect = [u, 2*u, 3*u]; uinf = bim3c_norm (m, uvect, 'inf'); uL2 = bim3c_norm (m, uvect, 'L2'); assert ([uinf, uL2], [3*V, V*sqrt(14*L^3)], 1e-12); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/bim1c_elem_to_nodes.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim1c_elem_to_nodes.m ***** test n = 10; msh = linspace (0, 1, n+1); nel = n; nnod = n+1; u_el = randn (nel, 1); un1 = bim1c_elem_to_nodes (msh, u_el); [un2, m] = bim1c_elem_to_nodes (msh, u_el); un3 = bim1c_elem_to_nodes (m, u_el); [un4, m] = bim1c_elem_to_nodes (m, u_el); assert (un1, un2, 1e-10) assert (un1, un3, 1e-10) assert (un1, un4, 1e-10) 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim2c_intrp.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim2c_intrp.m ***** test msh = bim2c_mesh_properties (msh2m_structured_mesh (linspace (0, 1, 11), linspace (0, 1, 13), 1, 1:4)); x = y = linspace (0, 1, 100).'; u = msh.p(1, :).'; ui = bim2c_intrp (msh, u, [], [x, y]); assert (ui, linspace (0, 1, 100), 10*eps); 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim2a_rhs.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim2a_rhs.m ***** shared mesh,f,g,nnodes,nelem ***** test ***** test ***** test 3 tests, 3 passed, 0 known failure, 0 skipped [inst/bim2a_axisymmetric_boundary_mass.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim2a_axisymmetric_boundary_mass.m ***** test n = 3; [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); mesh = bim2c_mesh_properties(mesh); uex = @(r,z) exp(r); duexdr = @(r,z) uex(r,z); d2uexdr2 = @(r,z) uex(r,z); duexdz = @(r,z) 0*uex(r,z); d2uexdz2 = @(r,z) 0*uex(r,z); Rnodesr = bim2c_unknowns_on_side(mesh,[2]); Rnodesl = bim2c_unknowns_on_side(mesh,[4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); D = 1; vr = 1; vz = 0; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + vr./r .* uex(r,z) + vr * duexdr(r,z) ... - D.*d2uexdz2(r,z) + vz * duexdz(r,z); gr = @(r,z) uex(r,z) - 1 * (-D*duexdr(r,z) + vr*uex(r,z)); gl = @(r,z) uex(r,z) - (-1) * (-D*duexdr(r,z) + vr*uex(r,z)); rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); Mr = bim2a_axisymmetric_boundary_mass(mesh,2); Ml = bim2a_axisymmetric_boundary_mass(mesh,4); S(Rnodesr,Rnodesr) += Mr; rhs(Rnodesr) += diag(Mr) .* gr(mesh.p(1,Rnodesr), mesh.p(2,Rnodesr))'; S(Rnodesl,Rnodesl) += Ml; rhs(Rnodesl) += diag(Ml) .* gl(mesh.p(1,Rnodesl), mesh.p(2,Rnodesl))'; u = S\rhs; assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-7) ***** test n = 10; [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); mesh = bim2c_mesh_properties(mesh); uex = @(r,z) exp(r); duexdr = @(r,z) uex(r,z); d2uexdr2 = @(r,z) uex(r,z); duexdz = @(r,z) 0*uex(r,z); d2uexdz2 = @(r,z) 0*uex(r,z); Rnodesr = bim2c_unknowns_on_side(mesh,[2]); Rnodesl = bim2c_unknowns_on_side(mesh,[4]); Rnodesb = bim2c_unknowns_on_side(mesh,[1]); Rnodest = bim2c_unknowns_on_side(mesh,[3]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); D = 1; vr = 1; vz = 0; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + vr./r .* uex(r,z) + vr * duexdr(r,z) ... - D.*d2uexdz2(r,z) + vz * duexdz(r,z); gr = @(r,z) uex(r,z) - 1 * (-D*duexdr(r,z) + vr*uex(r,z)); gl = @(r,z) uex(r,z) - (-1) * (-D*duexdr(r,z) + vr*uex(r,z)); gb = @(r,z) uex(r,z) - (-1) * (-D*duexdz(r,z) + vz*uex(r,z)); gt = @(r,z) uex(r,z) - 1 * (-D*duexdz(r,z) + vz*uex(r,z)); rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); Mr = bim2a_axisymmetric_boundary_mass(mesh,2); Ml = bim2a_axisymmetric_boundary_mass(mesh,4); Mb = bim2a_axisymmetric_boundary_mass(mesh,1); Mt = bim2a_axisymmetric_boundary_mass(mesh,3); S(Rnodesr,Rnodesr) += Mr; rhs(Rnodesr) += diag(Mr) .* gr(mesh.p(1,Rnodesr), mesh.p(2,Rnodesr))'; S(Rnodesl,Rnodesl) += Ml; rhs(Rnodesl) += diag(Ml) .* gl(mesh.p(1,Rnodesl), mesh.p(2,Rnodesl))'; S(Rnodesb,Rnodesb) += Mb; rhs(Rnodesb) += diag(Mb) .* gb(mesh.p(1,Rnodesb), mesh.p(2,Rnodesb))'; S(Rnodest,Rnodest) += Mt; rhs(Rnodest) += diag(Mt) .* gt(mesh.p(1,Rnodest), mesh.p(2,Rnodest))'; u = S\rhs; assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-7) 2 tests, 2 passed, 0 known failure, 0 skipped [inst/bim2a_axisymmetric_rhs.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim2a_axisymmetric_rhs.m ***** shared mesh,f,g,nnodes,nelem ***** test ***** test ***** test 3 tests, 3 passed, 0 known failure, 0 skipped [inst/bim2a_axisymmetric_advection_diffusion.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim2a_axisymmetric_advection_diffusion.m ***** test n = 3; [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); mesh = bim2c_mesh_properties(mesh); uex = @(r,z) exp(r); duexdr = @(r,z) uex(r,z); d2uexdr2 = @(r,z) uex(r,z); duexdz = @(r,z) 0*uex(r,z); d2uexdz2 = @(r,z) 0*uex(r,z); Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); D = 1; vr = 1; vz = 0; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + vr./r .* uex(r,z) + vr * duexdr(r,z) ... - D.*d2uexdz2(r,z) + vz * duexdz(r,z); rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-7) ***** test n = 20; [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); mesh = bim2c_mesh_properties(mesh); uex = @(r,z) exp(r) .* exp(1-z); duexdr = @(r,z) uex(r,z); d2uexdr2 = @(r,z) uex(r,z); duexdz = @(r,z) -uex(r,z); d2uexdz2 = @(r,z) uex(r,z); Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); D = 1; vr = 1; vz = 1; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + vr./r .* uex(r,z) + vr * duexdr(r,z) ... - D.*d2uexdz2(r,z) + vz * duexdz(r,z); rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-3) ***** test n = 10; [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); mesh = bim2c_mesh_properties(mesh); uex = @(r,z) exp(r) .* exp(1-z); duexdr = @(r,z) uex(r,z); d2uexdr2 = @(r,z) uex(r,z); duexdz = @(r,z) -uex(r,z); d2uexdz2 = @(r,z) uex(r,z); Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); D = 1; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 1/D * mesh.p(1,:)'; f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + 1./r .* uex(r,z) + duexdr(r,z) ... - D.*d2uexdz2(r,z); rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-3) ***** test n = 10; [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); mesh = bim2c_mesh_properties(mesh); uex = @(r,z) exp(r) .* exp(1-z); duexdr = @(r,z) uex(r,z); d2uexdr2 = @(r,z) uex(r,z); duexdz = @(r,z) -uex(r,z); d2uexdz2 = @(r,z) uex(r,z); Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); D = 1; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 1/D * 1/2*(mesh.p(1,:)').^2; f = @(r,z) 1./r.*(1+r).*(r-D) .* uex(r,z); rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-3) ***** test n = 3; [mesh] = msh2m_structured_mesh(linspace(-2,-1,n+1),linspace(0,1,n+1),1,1:4); mesh = bim2c_mesh_properties(mesh); uex = @(r,z) exp(r); duexdr = @(r,z) uex(r,z); d2uexdr2 = @(r,z) uex(r,z); duexdz = @(r,z) 0*uex(r,z); d2uexdz2 = @(r,z) 0*uex(r,z); Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); D = 1; vr = 1; vz = 0; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + vr./r .* uex(r,z) + vr * duexdr(r,z) ... - D.*d2uexdz2(r,z) + vz * duexdz(r,z); rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(abs(mesh.p(1,:)), mesh.p(2,:))); S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Dnodes) = uex(abs(mesh.p(1,Dnodes)), mesh.p(2,Dnodes)); u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); assert(u,uex(abs(mesh.p(1,:)), mesh.p(2,:))',1e-7) ***** test n = 10; [mesh] = msh2m_structured_mesh(linspace(-2,-1,n+1),linspace(0,1,n+1),1,1:4); mesh = bim2c_mesh_properties(mesh); uex = @(r,z) exp(r) .* exp(1-z); duexdr = @(r,z) uex(r,z); d2uexdr2 = @(r,z) uex(r,z); duexdz = @(r,z) -uex(r,z); d2uexdz2 = @(r,z) uex(r,z); Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); D = 1; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 1/D * 1/2*(mesh.p(1,:)').^2; f = @(r,z) 1./r.*(1+r).*(r-D) .* uex(r,z); rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(abs(mesh.p(1,:)), mesh.p(2,:))); S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Dnodes) = uex(abs(mesh.p(1,Dnodes)), mesh.p(2,Dnodes)); u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); assert(u,uex(abs(mesh.p(1,:)), mesh.p(2,:))',1e-3) ***** test [mesh] = msh2m_structured_mesh([0:.1:1],[0:.1:1],1,1:4); mesh = bim2c_mesh_properties(mesh); x = mesh.p(1,:)'; y = mesh.p(2,:)'; Dnodes = bim2c_unknowns_on_side(mesh,[1:4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); alpha = ones(Nelements,1); eta=ones(Nnodes,1); beta = 0; gamma = ones(Nnodes,1); A = bim2a_axisymmetric_advection_diffusion(mesh,1,1,1,0); B = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); assert(A,B) 7 tests, 7 passed, 0 known failure, 0 skipped [inst/bim1a_axisymmetric_reaction.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim1a_axisymmetric_reaction.m ***** test n = 100; mesh = linspace(0,1,n+1)'; cm = (mesh(1:end-1) + mesh(2:end))/2; uex = @(r) - r.^2 + 1; Nnodes = numel(mesh); Nelements = Nnodes-1; D = 1; v = cm; sigma = 1; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 0; delta = ones(Nelements,1); zeta = sigma*ones(Nnodes,1); f = @(r) 4*D + sigma*uex(r); rhs = bim1a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh)); S = bim1a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); R = bim1a_axisymmetric_reaction(mesh, delta, zeta); S += R; u = zeros(Nnodes,1); u(end) = uex(mesh(end)); u(1:end-1) = S(1:end-1,1:end-1)\(rhs(1:end-1) - S(1:end-1,end)*u(end)); assert(u,uex(mesh),1e-3) ***** test n = 100; mesh = linspace(0,1,n+1)'; cm = (mesh(1:end-1) + mesh(2:end))/2; uex = @(r) - r.^2 + 1; Nnodes = numel(mesh); Nelements = Nnodes-1; D = 1; v = cm; sigma = 1; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 1/D*v; delta = ones(Nelements,1); zeta = sigma*ones(Nnodes,1); f = @(r) 4*D + 2 - 4*r.^2 + sigma*uex(r); rhs = bim1a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh)); S = bim1a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); R = bim1a_axisymmetric_reaction(mesh, delta, zeta); S += R; u = zeros(Nnodes,1); u(end) = uex(mesh(end)); u(1:end-1) = S(1:end-1,1:end-1)\(rhs(1:end-1) - S(1:end-1,end)*u(end)); assert(u,uex(mesh),1e-3) ***** test x = linspace(0,1,101); A = bim1a_axisymmetric_reaction(x,1,1); delta = ones(100,1); zeta = ones(101,1); B = bim1a_axisymmetric_reaction(x,delta,zeta); assert(A,B) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/bim3a_rhs.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim3a_rhs.m ***** shared mesh,f,g,nnodes,nelem ***** test ***** test ***** test 3 tests, 3 passed, 0 known failure, 0 skipped [inst/bim3c_mesh_properties.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim3c_mesh_properties.m ***** shared mesh ***** test ***** test ***** test ***** test 4 tests, 4 passed, 0 known failure, 0 skipped [inst/bim1a_axisymmetric_advection_upwind.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim1a_axisymmetric_advection_upwind.m ***** test nn = 20; mesh = linspace(1,2,nn+1)'; D = 1; v = 0; sigma = 0; uex = @(r) exp(r); duexdr = @(r) uex(r); d2uexdr2 = @(r) uex(r); f = @(r,z) -D./r.*duexdr(r) - D.*d2uexdr2(r) ... + v./r .* uex(r) + v * duexdr(r) ... + sigma * uex(r); uex_left = uex(mesh(1)); uex_right = uex(mesh(end)); Ar = bim1a_axisymmetric_laplacian (mesh, D, 1); Adv = bim1a_axisymmetric_advection_upwind (mesh, v*ones(nn,1)); R = bim1a_axisymmetric_reaction (mesh, sigma, 1); M = Ar + Adv + R; M(1,:) *= 0; M(1,1) = 1; M(end,:) *= 0; M(end, end) = 1; rhs = bim1a_axisymmetric_rhs (mesh, 1, f(mesh)); rhs(1) = uex_left; rhs(end) = uex_right; uh = M \ rhs; assert(uh, uex(mesh), 1e-3); 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim1a_axisymmetric_advection_diffusion.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim1a_axisymmetric_advection_diffusion.m ***** test n = 3; mesh = linspace(1,2,n+1)'; uex = @(r) exp(r); duexdr = @(r) uex(r); d2uexdr2 = @(r) uex(r); Nnodes = numel(mesh); Nelements = Nnodes-1; D = 1; v = 1; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 1/D*v*ones(Nelements,1); f = @(r) -D./r.*duexdr(r) - D.*d2uexdr2(r) ... + v./r .* uex(r) + v * duexdr(r); rhs = bim1a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh)); S = bim1a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u([1,end]) = uex(mesh([1 end])); u(2:end-1) = S(2:end-1,2:end-1)\(rhs(2:end-1) - S(2:end-1,[1 end])*u([1 end])); assert(u,uex(mesh),1e-7) ***** test n = 100; mesh = linspace(0,1,n+1)'; cm = (mesh(1:end-1) + mesh(2:end))/2; uex = @(r) - r.^2 + 1; Nnodes = numel(mesh); Nelements = Nnodes-1; D = 1; v = 0; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = v; f = @(r) 4*D; rhs = bim1a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh)); S = bim1a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(end) = uex(mesh(end)); u(1:end-1) = S(1:end-1,1:end-1)\(rhs(1:end-1) - S(1:end-1,end)*u(end)); assert(u,uex(mesh),1e-3) ***** test n = 100; mesh = linspace(0,1,n+1)'; cm = (mesh(1:end-1) + mesh(2:end))/2; uex = @(r) - r.^2 + 1; Nnodes = numel(mesh); Nelements = Nnodes-1; D = 1; v = cm; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 1/D*v; f = @(r) 4*D + 2 - 4*r.^2; rhs = bim1a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh)); S = bim1a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(end) = uex(mesh(end)); u(1:end-1) = S(1:end-1,1:end-1)\(rhs(1:end-1) - S(1:end-1,end)*u(end)); assert(u,uex(mesh),1e-3) ***** test x = linspace(0,1,101); A = bim1a_axisymmetric_advection_diffusion(x,1,1,1,0); alpha = ones(100,1); gamma = ones(101,1); eta = gamma; B = bim1a_axisymmetric_advection_diffusion(x,alpha,gamma,eta,0); assert(A,B) 4 tests, 4 passed, 0 known failure, 0 skipped [inst/bim3a_osc_advection_diffusion.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim3a_osc_advection_diffusion.m ***** shared msh, epsilon, M, nnodes, nelem, x, y, z ***** test msh = bim3c_mesh_properties (msh3m_structured_mesh (0:5, 0:5, 0:5, 1, 1:6)); x = msh.p (1, :).'; y = msh.p (2, :).'; z = msh.p (3, :).'; u = ones (size (x)); M = bim3a_osc_advection_diffusion (msh, 1, 0); assert (M * u, zeros (size (u)), eps * 100) ***** test u = x; bnd = bim3c_unknowns_on_faces (msh, [1, 2]); int = setdiff (1:columns (msh.p), bnd); assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) ***** test u = y; bnd = bim3c_unknowns_on_faces (msh, [3, 4]); int = setdiff (1:columns (msh.p), bnd); assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) ***** test u = z; bnd = bim3c_unknowns_on_faces (msh, [5, 6]); int = setdiff (1:columns (msh.p), bnd); assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) ***** test u = z; bnd = bim3c_unknowns_on_faces (msh, [5, 6]); int = setdiff (1:columns (msh.p), bnd); M = bim3a_osc_advection_diffusion (msh, pi, 0); assert (M(int, int) * u(int), -M(int, bnd) * u(bnd), 100 * eps) ***** test M = bim3a_osc_advection_diffusion (msh, 1, x); assert (norm (sum (M, 1), inf), 0, eps * 100) ***** test M = bim3a_osc_advection_diffusion (msh, 1, y); assert (norm (sum (M, 1), inf), 0, eps * 100) ***** test M = bim3a_osc_advection_diffusion (msh, 1, z); assert (norm (sum (M, 1), inf), 0, eps * 100) ***** demo gmsh_input = [["Point(1) = {0, 0, 0, .1}; \n"], ... ["Point(2) = {1, 0, 0, .1}; \n"], ... ["Point(3) = {0, -.3, 0, .1}; \n"], ... ["Point(4) = {0, +.3, 0, .1}; \n"], ... ["Point(5) = {1, -.3, 0, .1}; \n"], ... ["Point(6) = {1, 0.3, 0, .1}; \n"], ... ["Point(7) = {0, 0, -.3, .1}; \n"], ... ["Point(8) = {0, 0, +.3, .1}; \n"], ... ["Point(9) = {1, 0, -.3, .1}; \n"], ... ["Point(10) = {1, 0, 0.3, .1}; \n"], ... ["Circle(1) = {4, 1, 7}; \n"], ... ["Circle(2) = {7, 1, 3}; \n"], ... ["Circle(3) = {3, 1, 8}; \n"], ... ["Circle(4) = {8, 1, 4}; \n"], ... ["Circle(5) = {6, 2, 9}; \n"], ... ["Circle(6) = {9, 2, 5}; \n"], ... ["Circle(7) = {5, 2, 10}; \n"], ... ["Circle(8) = {10, 2, 6}; \n"], ... ["Line(9) = {4, 6}; \n"], ... ["Line(10) = {3, 5}; \n"], ... ["Line(11) = {8, 10}; \n"], ... ["Line(12) = {7, 9}; \n"], ... ["Line Loop(13) = {4, 1, 2, 3}; \n"], ... ["Plane Surface(14) = {13}; \n"], ... ["Line Loop(15) = {5, 6, 7, 8}; \n"], ... ["Plane Surface(16) = {15}; \n"], ... ["Line Loop(17) = {9, -8, -11, 4}; \n"], ... ["Ruled Surface(18) = {17}; \n"], ... ["Line Loop(19) = {12, -5, -9, 1}; \n"], ... ["Ruled Surface(20) = {19}; \n"], ... ["Line Loop(21) = {12, 6, -10, -2}; \n"], ... ["Ruled Surface(22) = {21}; \n"], ... ["Line Loop(23) = {11, -7, -10, 3}; \n"], ... ["Ruled Surface(24) = {23}; \n"], ... ["Surface Loop(25) = {18, 20, 22, 16, 24, 14}; \n"], ... ["Volume(26) = {25}; \n"]]; fname = tmpnam (); [fid, msg] = fopen (strcat (fname, ".geo"), "w"); if (fid < 0); error (msg); endif fputs (fid, gmsh_input); fclose (fid); msh = bim3c_mesh_properties (msh3m_gmsh (fname, "clscale", ".25")); x = msh.p (1, :).'; u = x; bnd = bim3c_unknowns_on_faces (msh, [14, 16]); int = setdiff (1:columns (msh.p), bnd); Mosc = bim3a_osc_advection_diffusion (msh, 1, msh.p(1,:)'*0); Mgal = bim3a_advection_diffusion (msh, 1, msh.p(1,:)'*0); u(int) = Mosc(int, int) \ ( - Mosc(int, bnd) * u(bnd)); uosc = u; u(int) = Mgal(int, int) \ ( - Mgal(int, bnd) * u(bnd)); ugal = u; fname_out = tmpnam (); printf ("saving results to %s \n", strcat (fname_out, ".vtu")); fpl_vtk_raw_write_field (fname_out, msh, {uosc, "u_osc"; ugal, "u_galerkin"}, {}); unlink (fname); ***** demo gmsh_input = [["Point(1) = {0, 0, 0, .1}; \n"], ... ["Point(2) = {1, 0, 0, .1}; \n"], ... ["Point(3) = {0, -.3, 0, .1}; \n"], ... ["Point(4) = {0, +.3, 0, .1}; \n"], ... ["Point(5) = {1, -.3, 0, .1}; \n"], ... ["Point(6) = {1, 0.3, 0, .1}; \n"], ... ["Point(7) = {0, 0, -.3, .1}; \n"], ... ["Point(8) = {0, 0, +.3, .1}; \n"], ... ["Point(9) = {1, 0, -.3, .1}; \n"], ... ["Point(10) = {1, 0, 0.3, .1}; \n"], ... ["Circle(1) = {4, 1, 7}; \n"], ... ["Circle(2) = {7, 1, 3}; \n"], ... ["Circle(3) = {3, 1, 8}; \n"], ... ["Circle(4) = {8, 1, 4}; \n"], ... ["Circle(5) = {6, 2, 9}; \n"], ... ["Circle(6) = {9, 2, 5}; \n"], ... ["Circle(7) = {5, 2, 10}; \n"], ... ["Circle(8) = {10, 2, 6}; \n"], ... ["Line(9) = {4, 6}; \n"], ... ["Line(10) = {3, 5}; \n"], ... ["Line(11) = {8, 10}; \n"], ... ["Line(12) = {7, 9}; \n"], ... ["Line Loop(13) = {4, 1, 2, 3}; \n"], ... ["Plane Surface(14) = {13}; \n"], ... ["Line Loop(15) = {5, 6, 7, 8}; \n"], ... ["Plane Surface(16) = {15}; \n"], ... ["Line Loop(17) = {9, -8, -11, 4}; \n"], ... ["Ruled Surface(18) = {17}; \n"], ... ["Line Loop(19) = {12, -5, -9, 1}; \n"], ... ["Ruled Surface(20) = {19}; \n"], ... ["Line Loop(21) = {12, 6, -10, -2}; \n"], ... ["Ruled Surface(22) = {21}; \n"], ... ["Line Loop(23) = {11, -7, -10, 3}; \n"], ... ["Ruled Surface(24) = {23}; \n"], ... ["Surface Loop(25) = {18, 20, 22, 16, 24, 14}; \n"], ... ["Volume(26) = {25}; \n"]]; fname = tmpnam (); [fid, msg] = fopen (strcat (fname, ".geo"), "w"); if (fid < 0); error (msg); endif fputs (fid, gmsh_input); fclose (fid); msh = bim3c_mesh_properties (msh3m_gmsh (fname, "clscale", ".25")); x = msh.p (1, :).'; u = x; bnd = bim3c_unknowns_on_faces (msh, [14, 16]); int = setdiff (1:columns (msh.p), bnd); Mosc = bim3a_osc_advection_diffusion (msh, 1, msh.p(1,:)'*0); Mgal = bim3a_advection_diffusion (msh, 1, msh.p(1,:)'*0); f = bim3a_rhs (msh, 10, 1); u(int) = Mosc(int, int) \ (f(int) - Mosc(int, bnd) * u(bnd)); uosc = u; u(int) = Mgal(int, int) \ (f(int) - Mgal(int, bnd) * u(bnd)); ugal = u; fname_out = tmpnam (); printf ("saving results to %s \n", strcat (fname_out, ".vtu")); fpl_vtk_raw_write_field (fname_out, msh, {uosc, "u_osc"; ugal, "u_galerkin"}, {}); unlink (fname); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/bim2c_norm.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim2c_norm.m ***** test ***** shared L, V, x, y, m L = rand (1); V = rand (1); x = linspace (0,L,4); y = x; m = msh2m_structured_mesh (x,y,1,1:4); m.area = msh2m_geometrical_properties (m, 'area'); m.shg = msh2m_geometrical_properties (m, 'shg'); u = V * ones (columns(m.p),1); uinf = bim2c_norm (m, u, 'inf'); uL2 = bim2c_norm (m, u, 'L2'); uH1 = bim2c_norm (m, u, 'H1'); assert ([uinf, uL2, uH1], [V, V*L, V*L], 1e-12); ***** test u = V * (m.p(1,:) + 2*m.p(2,:))'; uinf = bim2c_norm (m, u, 'inf'); uL2 = bim2c_norm (m, u, 'L2'); uH1 = bim2c_norm (m, u, 'H1'); assert ([uinf, uL2, uH1], [3*L*V, V*L^2*sqrt(8/3), V*sqrt(8/3*L^4 + 5*L^2)], 1e-12); ***** test u = V * ones (columns(m.t),1); uinf = bim2c_norm (m, u, 'inf'); uL2 = bim2c_norm (m, u, 'L2'); assert ([uinf, uL2], [V, V*L], 1e-12); ***** test u = V * ones (columns(m.t),1); uvect = [u, 2*u]; uinf = bim2c_norm (m, uvect, 'inf'); uL2 = bim2c_norm (m, uvect, 'L2'); assert ([uinf, uL2], [2*V, V*L*sqrt(5)], 1e-12); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/bim3c_intrp.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim3c_intrp.m ***** test msh = bim3c_mesh_properties (msh3m_structured_mesh (linspace (0, 1, 11), linspace (0, 1, 9), linspace (0, 1, 13), 1, 1:6)); x = y = z = linspace (0, 1, 100).'; u = msh.p(1, :).'; ui = bim3c_intrp (msh, u, [], [x, y, z]); assert (ui, linspace (0, 1, 100), 10*eps); 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim1a_axisymmetric_rhs.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim1a_axisymmetric_rhs.m ***** test x = linspace(0,1,101); A = bim1a_axisymmetric_rhs(x,1,1); delta = ones(100,1); zeta = ones(101,1); B = bim1a_axisymmetric_rhs(x,delta,zeta); assert(A,B) 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim1c_norm.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim1c_norm.m ***** xtest ***** shared L, V, m L = rand (1); V = rand (1); m = linspace (0,1,5).^2; m *= L; u = V * ones (size (m))'; uinf = bim1c_norm (m, u, 'inf'); uL2 = bim1c_norm (m, u, 'L2'); uH1 = bim1c_norm (m, u, 'H1'); assert ([uinf, uL2, uH1], [V, V*sqrt(L), V*sqrt(L)], 1e-12); ***** test u = V * m'; uinf = bim1c_norm (m, u, 'inf'); uL2 = bim1c_norm (m, u, 'L2'); uH1 = bim1c_norm (m, u, 'H1'); assert ([uinf, uL2, uH1], [L*V, V*sqrt(L^3/3), V*sqrt(L^3/3 + L)], 1e-12); ***** test u = V * ones (size (diff (m)))'; uinf = bim1c_norm (m, u, 'inf'); uL2 = bim1c_norm (m, u, 'L2'); assert ([uinf, uL2], [V, V*sqrt(L)], 1e-12); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/bim3c_unknowns_on_faces.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim3c_unknowns_on_faces.m ***** shared mesh ***** test ***** test ***** test 3 tests, 3 passed, 0 known failure, 0 skipped [inst/bim1a_advection_diffusion.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim1a_advection_diffusion.m ***** test x = linspace(0,1,101); A = bim1a_advection_diffusion(x,1,1,1,0); alpha = ones(100,1); gamma = ones(101,1); eta = gamma; B = bim1a_advection_diffusion(x,alpha,gamma,eta,0); assert(A,B) 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim2a_axisymmetric_reaction.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim2a_axisymmetric_reaction.m ***** shared mesh,delta,zeta,nnodes,nelem ***** test ***** test ***** test ***** test n = 20; [mesh] = msh2m_structured_mesh(linspace(1,2,n+1),linspace(0,1,n+1),1,1:4); mesh = bim2c_mesh_properties(mesh); uex = @(r,z) exp(r) .* exp(1-z); duexdr = @(r,z) uex(r,z); d2uexdr2 = @(r,z) uex(r,z); duexdz = @(r,z) -uex(r,z); d2uexdz2 = @(r,z) uex(r,z); Dnodes = bim2c_unknowns_on_side(mesh,[1,2,3,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); D = 1; vr = 1; vz = 1; sigma = 1; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); delta = sigma*ones(columns(mesh.t),1); zeta = ones(columns(mesh.p),1); beta = 1/D*[vr*ones(1,Nelements); vz*ones(1,Nelements)]; f = @(r,z) -D./r.*duexdr(r,z) - D.*d2uexdr2(r,z) ... + vr./r .* uex(r,z) + vr * duexdr(r,z) ... - D.*d2uexdz2(r,z) + vz * duexdz(r,z) ... + sigma * uex(r,z); rhs = bim2a_axisymmetric_rhs(mesh, ones(Nelements,1), f(mesh.p(1,:), mesh.p(2,:))); S = bim2a_axisymmetric_advection_diffusion(mesh,alpha,gamma,eta,beta); C = bim2a_axisymmetric_reaction(mesh,delta,zeta); S += C; u = zeros(Nnodes,1); u(Dnodes) = uex(mesh.p(1,Dnodes), mesh.p(2,Dnodes)); u(Varnodes) = S(Varnodes,Varnodes)\(rhs(Varnodes) - S(Varnodes,Dnodes)*u(Dnodes)); assert(u,uex(mesh.p(1,:), mesh.p(2,:))',1e-3) 4 tests, 4 passed, 0 known failure, 0 skipped [inst/bim2a_reaction.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim2a_reaction.m ***** shared mesh,delta,zeta,nnodes,nelem ***** test ***** test ***** test 3 tests, 3 passed, 0 known failure, 0 skipped [inst/bim2c_mesh_properties.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim2c_mesh_properties.m ***** shared mesh ***** test ***** test ***** test 3 tests, 3 passed, 0 known failure, 0 skipped [inst/bim1a_reaction.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim1a_reaction.m ***** test x = linspace(0,1,101); A = bim1a_reaction(x,1,1); delta = ones(100,1); zeta = ones(101,1); B = bim1a_reaction(x,delta,zeta); assert(A,B) 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim3a_reaction.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim3a_reaction.m ***** shared mesh,delta,zeta,nnodes,nelem ***** test ***** test ***** test 3 tests, 3 passed, 0 known failure, 0 skipped [inst/bim3c_global_flux.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim3c_global_flux.m ***** test N = 10; pp = linspace (0, 1, N); msh = bim3c_mesh_properties (msh3m_structured_mesh (pp, pp, pp, 1, 1:6)); u = ones (N^3, 1); v = ones (N^3, 1); alpha = ones (columns (msh.t), 1); F = bim3c_global_flux (msh, u, alpha, v); assert (norm (F(:), inf), 0, 100*eps); 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim3a_laplacian.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim3a_laplacian.m ***** shared mesh,epsilon,kappa,nnodes,nelem ***** test ***** test ***** test 3 tests, 3 passed, 0 known failure, 0 skipped [inst/bim2c_tri_to_nodes.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim2c_tri_to_nodes.m ***** test msh = bim2c_mesh_properties (msh2m_structured_mesh (linspace (0, 1, 3), linspace (0, 1, 3), 1, 1:4, "random")); nel = columns (msh.t); nnod = columns (msh.p); u_tri = randn (nel, 1); un1 = bim2c_tri_to_nodes (msh, u_tri); [un2, m] = bim2c_tri_to_nodes (msh, u_tri); assert (un1, un2, 1e-10) 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim3c_tri_to_nodes.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim3c_tri_to_nodes.m ***** test msh = bim3c_mesh_properties (msh3m_structured_mesh (linspace (0, 1, 31), linspace (0, 1, 13), linspace (0, 1, 13), 1, 1:6)); nel = columns (msh.t); nnod = columns (msh.p); u_tri = randn (nel, 1); un1 = bim3c_tri_to_nodes (msh, u_tri); [un2, m] = bim3c_tri_to_nodes (msh, u_tri); assert (un1, un2, 1e-10) 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim1a_rhs.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim1a_rhs.m ***** test x = linspace(0,1,101); A = bim1a_rhs(x,1,1); delta = ones(100,1); zeta = ones(101,1); B = bim1a_rhs(x,delta,zeta); assert(A,B) 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim1a_advection_upwind.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim1a_advection_upwind.m ***** test n = 200; mesh = linspace(0,1,n+1)'; uex = @(r) - r.^2 + 1; Nnodes = numel(mesh); Nelements = Nnodes-1; D = 1; v = 1; sigma = 0; alpha = D*ones(Nelements,1); gamma = ones(Nnodes,1); eta = ones(Nnodes,1); beta = 1/D*v*ones(Nelements,1); delta = ones(Nelements,1); zeta = sigma*ones(Nnodes,1); f = @(r) 2*D - 2*v.*r + sigma*uex(r); rhs = bim1a_rhs(mesh, ones(Nelements,1), f(mesh)); S = bim1a_laplacian(mesh,alpha,gamma); A = bim1a_advection_upwind(mesh, beta); R = bim1a_reaction(mesh, delta, zeta); S += (A+R); u = zeros(Nnodes,1); u([1 end]) = uex(mesh([1 end])); u(2:end-1) = S(2:end-1,2:end-1)\(rhs(2:end-1) - S(2:end-1,[1 end])*u([1 end])); assert(u,uex(mesh),1e-3) 1 test, 1 passed, 0 known failure, 0 skipped [inst/bim2a_advection_diffusion.m] >>>>> /build/octave-bim-v2QSUA/octave-bim-1.1.5/inst/bim2a_advection_diffusion.m ***** test [mesh] = msh2m_structured_mesh([0:1/3:1],[0:1/3:1],1,1:4); mesh = bim2c_mesh_properties(mesh); x = mesh.p(1,:)'; Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); alpha = ones(Nelements,1); eta = .1*ones(Nnodes,1); beta = [ones(1,Nelements);zeros(1,Nelements)]; gamma = ones(Nnodes,1); f = bim2a_rhs(mesh,ones(Nelements,1),ones(Nnodes,1)); S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); uex = x - (exp(10*x)-1)/(exp(10)-1); assert(u,uex,1e-7) ***** test [mesh] = msh2m_structured_mesh([0:1/3:1],[0:1/3:1],1,1:4); mesh = bim2c_mesh_properties(mesh); x = mesh.p(1,:)'; Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); alpha = ones(Nelements,1); eta = .1*ones(Nnodes,1); beta = x; gamma = ones(Nnodes,1); f = bim2a_rhs(mesh,ones(Nelements,1),ones(Nnodes,1)); S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); uex = x - (exp(10*x)-1)/(exp(10)-1); assert(u,uex,1e-7) ***** test [mesh] = msh2m_structured_mesh([0:1/3:1],[0:1/3:1],1,1:4); mesh = bim2c_mesh_properties(mesh); x = mesh.p(1,:)'; Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); alpha = 10*ones(Nelements,1); eta = .01*ones(Nnodes,1); beta = x/10; gamma = ones(Nnodes,1); f = bim2a_rhs(mesh,ones(Nelements,1),ones(Nnodes,1)); S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); uex = x - (exp(10*x)-1)/(exp(10)-1); assert(u,uex,1e-7) ***** test [mesh] = msh2m_structured_mesh([0:1/3:1],[0:1/3:1],1,1:4); mesh = bim2c_mesh_properties(mesh); x = mesh.p(1,:)'; Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); alpha = 10*ones(Nelements,1); eta = .001*ones(Nnodes,1); beta = x/100; gamma = 10*ones(Nnodes,1); f = bim2a_rhs(mesh,ones(Nelements,1),ones(Nnodes,1)); S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); uex = x - (exp(10*x)-1)/(exp(10)-1); assert(u,uex,1e-7) ***** test [mesh] = msh2m_structured_mesh([0:1/1e3:1],[0:1/2:1],1,1:4); mesh = bim2c_mesh_properties(mesh); x = mesh.p(1,:)'; Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); alpha = 3*ones(Nelements,1); eta = x+1; beta = [ones(1,Nelements);zeros(1,Nelements)]; gamma = 2*x; ff = 2*(6*x.^2+6*x) - (6*x+6).*(1-2*x)+6*(x-x.^2); f = bim2a_rhs(mesh,ones(Nelements,1),ff); S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); uex = x - x.^2; assert(u,uex,5e-3) ***** test [mesh] = msh2m_structured_mesh([0:1/1e3:1],[0:1/2:1],1,1:4); mesh = bim2c_mesh_properties(mesh); x = mesh.p(1,:)'; Dnodes = bim2c_unknowns_on_side(mesh,[2,4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); alpha = ones(Nelements,1); eta = ones(Nnodes,1); beta = 0; gamma = x+1; ff = 4*x+1; f = bim2a_rhs(mesh,ones(Nelements,1),ff); S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); uex = x - x.^2; assert(u,uex,1e-7) ***** test [mesh] = msh2m_structured_mesh([0:.1:1],[0:.1:1],1,1:4); mesh = bim2c_mesh_properties(mesh); x = mesh.p(1,:)';y = mesh.p(2,:)'; Dnodes = bim2c_unknowns_on_side(mesh,[1:4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); Varnodes = setdiff(1:Nnodes,Dnodes); alpha = ones(Nelements,1); diff = 1e-2; eta=diff*ones(Nnodes,1); beta =[ones(1,Nelements);ones(1,Nelements)]; gamma = x*0+1; ux = y.*(1-exp((y-1)/diff)) .* (1-exp((x-1)/diff)-x.*exp((x-1)/diff)/diff); uy = x.*(1-exp((x-1)/diff)) .* (1-exp((y-1)/diff)-y.*exp((y-1)/diff)/diff); uxx = y.*(1-exp((y-1)/diff)) .* (-2*exp((x-1)/diff)/diff-x.*exp((x-1)/diff)/(diff^2)); uyy = x.*(1-exp((x-1)/diff)) .* (-2*exp((y-1)/diff)/diff-y.*exp((y-1)/diff)/(diff^2)); ff = -diff*(uxx+uyy)+ux+uy; f = bim2a_rhs(mesh,ones(Nelements,1),ff); S = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); u = zeros(Nnodes,1); u(Varnodes) = S(Varnodes,Varnodes)\f(Varnodes); uex = x.*y.*(1-exp((x-1)/diff)).*(1-exp((y-1)/diff)); assert(u,uex,1e-7) ***** test [mesh] = msh2m_structured_mesh([0:.1:1],[0:.1:1],1,1:4); mesh = bim2c_mesh_properties(mesh); x = mesh.p(1,:)'; y = mesh.p(2,:)'; Dnodes = bim2c_unknowns_on_side(mesh,[1:4]); Nnodes = columns(mesh.p); Nelements = columns(mesh.t); alpha = ones(Nelements,1); eta=ones(Nnodes,1); beta = 0; gamma = ones(Nnodes,1); A = bim2a_advection_diffusion(mesh,1,1,1,0); B = bim2a_advection_diffusion(mesh,alpha,gamma,eta,beta); assert(A,B) 8 tests, 8 passed, 0 known failure, 0 skipped Checking C++ files ... Summary: 92 tests, 92 passed, 0 known failures, 0 skipped dh_installdocs -i -O--buildsystem=octave dh_installchangelogs -i -O--buildsystem=octave dh_octave_changelogs -i -O--buildsystem=octave dh_octave_examples -i -O--buildsystem=octave dh_installsystemduser -i -O--buildsystem=octave dh_perl -i -O--buildsystem=octave dh_link -i -O--buildsystem=octave dh_strip_nondeterminism -i -O--buildsystem=octave dh_compress -i -O--buildsystem=octave dh_fixperms -i -O--buildsystem=octave dh_missing -i -O--buildsystem=octave dh_octave_substvar -i -O--buildsystem=octave dh_installdeb -i -O--buildsystem=octave dh_gencontrol -i -O--buildsystem=octave dpkg-gencontrol: warning: package octave-bim: substitution variable ${octave:Upstream-Description} unused, but is defined dh_md5sums -i -O--buildsystem=octave dh_builddeb -i -O--buildsystem=octave dpkg-deb: building package 'octave-bim' in '../octave-bim_1.1.5-7_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../octave-bim_1.1.5-7_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/octave-bim-v2QSUA /tmp/octave-bim-1.1.5-7jw58a_hv I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.pBPMtASwTQ... I: success in 665.2941 seconds md5: octave-bim_1.1.5-7_all.deb: OK sha1: octave-bim_1.1.5-7_all.deb: OK sha256: octave-bim_1.1.5-7_all.deb: OK Checksums: OK