Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/n/ngs-sdk/ngs-sdk_2.10.9-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/ngs-sdk-2.10.9-15gg_5vr3/ngs-sdk_2.10.9-1_amd64.buildinfo Get source package info: ngs-sdk=2.10.9-1 Source URL: http://snapshot.notset.fr/mr/package/ngs-sdk/2.10.9-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 apt=2.1.18 autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-5 bsdutils=1:2.36.1-5 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20200601 ca-certificates-java=20190909 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 d-shlibs=0.98 dash=0.5.11+git20200708+dd9ef66-5 dctrl-tools=2.24-3+b1 debconf=1.5.74 debhelper=13.3.1 debian-archive-keyring=2019.1 debianutils=4.11.2 default-jdk=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 devscripts=2.20.5 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-5 dirmngr=2.2.20-1 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20201015-2 fakeroot=1.25.3-1.1 file=1:5.39-3 findutils=4.8.0-1 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-3 gettext-base=0.21-3 gnupg=2.2.20-1 gnupg-l10n=2.2.20-1 gnupg-utils=2.2.20-1 gpg=2.2.20-1 gpg-agent=2.2.20-1 gpg-wks-client=2.2.20-1 gpg-wks-server=2.2.20-1 gpgconf=2.2.20-1 gpgsm=2.2.20-1 gpgv=2.2.20-1 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 java-common=0.72 javahelper=0.77 libacl1=2.2.53-9 libapt-pkg6.0=2.1.18 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libasound2=1.2.4-1.1 libasound2-data=1.2.4-1.1 libassuan0=2.5.4-1 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libavahi-client3=0.8-3 libavahi-common-data=0.8-3 libavahi-common3=0.8-3 libb-hooks-op-check-perl=0.22-1+b3 libbinutils=2.35.1-7 libblkid1=2.36.1-5 libbrotli1=1.0.9-2+b2 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libclass-method-modifiers-perl=2.13-1 libcom-err2=1.45.6-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libcups2=2.3.3op1-7 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.20-1 libdebconfclient0=0.256 libdebhelper-perl=13.3.1 libdevel-callchecker-perl=0.008-1+b2 libdpkg-perl=1.20.7.1 libdrm-amdgpu1=2.4.103-2 libdrm-common=2.4.103-2 libdrm-intel1=2.4.103-2 libdrm-nouveau2=2.4.103-2 libdrm-radeon1=2.4.103-2 libdrm2=2.4.103-2 libdynaloader-functions-perl=0.003-1.1 libedit2=3.1-20191231-2+b1 libelf1=0.182-3 libencode-locale-perl=1.05-1.1 libexpat1=2.2.10-1 libfakeroot=1.25.3-1.1 libffi7=3.3-5 libfile-dirlist-perl=0.05-2 libfile-homedir-perl=1.006-1 libfile-listing-perl=6.14-1 libfile-stripnondeterminism-perl=1.9.0-1 libfile-touch-perl=0.11-1 libfile-which-perl=1.23-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgif7=5.1.9-1 libgl1=1.3.2-1 libgl1-mesa-dri=20.3.3-1 libglapi-mesa=20.3.3-1 libglib2.0-0=2.66.4-1 libglvnd0=1.3.2-1 libglx-mesa0=20.3.3-1 libglx0=1.3.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-5 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-4 libharfbuzz0b=2.6.7-1 libhogweed6=3.6-2 libhtml-parser-perl=3.75-1+b1 libhtml-tagset-perl=3.20-4 libhtml-tree-perl=5.07-2 libhttp-cookies-perl=6.10-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.27-1 libhttp-negotiate-perl=6.01-1 libicu67=67.1-6 libidn2-0=2.3.0-4 libimport-into-perl=1.002005-1 libio-html-perl=1.001-1.1 libio-pty-perl=1:1.15-2 libio-socket-ssl-perl=2.068-1 libipc-run-perl=20200505.0-1 libisl23=0.23-1 libitm1=10.2.1-6 libjpeg62-turbo=1:2.0.5-2 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libksba8=1.5.0-3 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.56+dfsg-1 libllvm11=1:11.0.1-2 liblsan0=10.2.1-6 liblwp-mediatypes-perl=6.04-1 liblwp-protocol-https-perl=6.10-1 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmodule-runtime-perl=0.016-1 libmoo-perl=2.004004-1 libmount1=2.36.1-5 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-2 libnet-http-perl=6.20-1 libnet-ssleay-perl=1.88-3+b1 libnettle8=3.6-2 libnpth0=1.6-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.29-1 libnss3=2:3.60-1 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libparams-classify-perl=0.015-1+b3 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libpcsclite1=1.9.0-1 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-2 libpython3.9-stdlib=3.9.1-2 libquadmath0=10.2.1-6 libreadline8=8.1-1 librole-tiny-perl=2.002003-1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsensors-config=1:3.6.0-5 libsensors5=1:3.6.0-5 libsepol1=3.1-1 libsigsegv2=2.12-3 libsmartcols1=2.36.1-5 libsqlite3-0=3.34.0-1 libssl1.1=1.1.1i-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libstrictures-perl=2.000006-1 libsub-override-perl=0.09-2 libsub-quote-perl=2.006006-1 libsystemd0=247.2-4 libtasn1-6=4.16.0-2 libtimedate-perl=2.3300-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtry-tiny-perl=0.30-1 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.2-4 libunistring2=0.9.10-4 liburi-perl=5.06-1 libuuid1=2.36.1-5 libvulkan1=1.2.162.0-1 libwww-perl=6.52-1 libwww-robotrules-perl=6.02-1 libx11-6=2:1.7.0-2 libx11-data=2:1.7.0-2 libx11-xcb1=2:1.7.0-2 libxau6=1:1.0.8-1+b2 libxcb-dri2-0=1.14-2.1 libxcb-dri3-0=1.14-2.1 libxcb-glx0=1.14-2.1 libxcb-present0=1.14-2.1 libxcb-shm0=1.14-2.1 libxcb-sync1=1.14-2.1 libxcb-xfixes0=1.14-2.1 libxcb1=1.14-2.1 libxdamage1=1:1.1.5-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1.1 libxfixes3=1:5.0.3-2 libxi6=2:1.7.10-1 libxml2=2.9.10+dfsg-6.3+b1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libxxhash0=0.8.0-2 libz3-4=4.8.9-1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.5-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 markdown=1.0.1-10.1 maven-repo-helper=1.9.4 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 netbase=6.2 openjdk-11-jdk=11.0.10+8-1 openjdk-11-jdk-headless=11.0.10+8-1 openjdk-11-jre=11.0.10+8-1 openjdk-11-jre-headless=11.0.10+8-1 openssl=1.1.1i-1 passwd=1:4.8.1-1 patch=2.7.6-7 patchutils=0.4.2-1 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 perl-openssl-defaults=5 pinentry-curses=1.1.0-4 po-debconf=1.0.21+nmu1 python3=3.9.1-1 python3-all=3.9.1-1 python3-distutils=3.9.1-2 python3-lib2to3=3.9.1-2 python3-minimal=3.9.1-1 python3.9=3.9.1-2 python3.9-minimal=3.9.1-2 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020f-1 ucf=3.0043 util-linux=2.36.1-5 wdiff=1.2.2-2+b1 x11-common=1:7.7+21 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210124T144050Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210115T083904Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d ngs-sdk=2.10.9-1 && mkdir -p /build/ngs-sdk-btETL1 && dpkg-source --no-check -x /*.dsc /build/ngs-sdk-btETL1/ngs-sdk-2.10.9 && chown -R builduser:builduser /build/ngs-sdk-btETL1" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/ngs-sdk-btETL1/ngs-sdk-2.10.9 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1610905976" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/ngs-sdk-btETL1 /tmp/ngs-sdk-2.10.9-15gg_5vr3 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210115T083904Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.MuZYe0QYX_ as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.MuZYe0QYX_ Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-5). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210115T083904Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210115T083904Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1027 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4661 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210124T144050Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210115T083904Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.MuZYe0QYX_ Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210124T144050Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210115T083904Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210124T144050Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210124T144050Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210124T144050Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210124T144050Z unstable/main amd64 Packages [11.7 MB] Fetched 34.4 MB in 30s (1145 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.MuZYe0QYX_ I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d ngs-sdk=2.10.9-1 && mkdir -p /build/ngs-sdk-btETL1 && dpkg-source --no-check -x /*.dsc /build/ngs-sdk-btETL1/ngs-sdk-2.10.9 && chown -R builduser:builduser /build/ngs-sdk-btETL1"' exec /tmp/mmdebstrap.MuZYe0QYX_ Reading package lists... NOTICE: 'ngs-sdk' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ngs-sdk.git Please use: git clone https://salsa.debian.org/med-team/ngs-sdk.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1114 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main ngs-sdk 2.10.9-1 (dsc) [2299 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main ngs-sdk 2.10.9-1 (tar) [1100 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main ngs-sdk 2.10.9-1 (diff) [11.8 kB] Fetched 1114 kB in 1s (1290 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'ngs-sdk_2.10.9-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting ngs-sdk in /build/ngs-sdk-btETL1/ngs-sdk-2.10.9 dpkg-source: info: unpacking ngs-sdk_2.10.9.orig.tar.gz dpkg-source: info: unpacking ngs-sdk_2.10.9-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_jni.patch dpkg-source: info: applying do_not_exclude_certain_architectures_explicitly.patch dpkg-source: info: applying fallback-on-generic-atomic32.patch dpkg-source: info: applying enable-ppc64el.patch dpkg-source: info: applying more_archs I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/ngs-sdk-btETL1/ngs-sdk-2.10.9 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1610905976" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.MuZYe0QYX_ dpkg-buildpackage: info: source package ngs-sdk dpkg-buildpackage: info: source version 2.10.9-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3,javahelper,jh_maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9' if [ -e ngs-sdk/Makefile.config.linux.x86_64 ] ; then \ # dh_auto_clean --sourcedirectory=ngs-sdk ; \ dh_auto_clean ; \ fi rm -rf ngs-java/x86_64-linux-gnu rm -rf ngs-bam/x86_64-linux-gnu rm -f ngs-bam/Makefile.config rm -f ngs-bam/Makefile.config.install.linux.x86_64.prl rm -f ngs-bam/Makefile.config.linux.x86_64 rm -f ngs-bam/reconfigure rm -rf ngs-sdk/ngs/unix/generic rm -rf ngs-sdk/x86_64-linux-gnu rm -rf ngs-python/build make[1]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9' jh_clean mh_clean dh_clean debian/rules binary-arch dh binary-arch --with python3,javahelper,jh_maven_repo_helper dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9' mkdir ngs-sdk/ngs/unix/generic && cp debian/atomic32.h ngs-sdk/ngs/unix/generic/ # # that's no standard configure script lacking support of default options \ ./configure --build=x86_64-linux-gnu --prefix=/usr -- --source=1.7 CONFIGURING ngs-sdk Configuring NGS-SDK package checking system type... Linux checking OS distributor... checking machine architecture... x86_64 checking for supported architecture... x86_64 (64 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... gcc tool chain is supported checking for g++... yes checking for Python 3... /usr/bin/python3 checking whether gcc accepts -Wno-array-bounds... yes checking whether g++ accepts -static-libstdc++... no configure: creating 'ld.linux.exe_cmd.sh' configure: creating 'Makefile.config.linux.x86_64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk build output path: /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel includedir: /usr/include bindir: /usr/bin libdir: /usr/lib sharedir: /usr/share CC = gcc -c CPP = g++ configured with: "'--build=x86_64-linux-gnu' '--prefix=/usr' '--' '--source=1.7'" CONFIGURING ngs-java Configuring NGS-JAVA package checking system type... Linux checking OS distributor... checking machine architecture... x86_64 checking for supported architecture... x86_64 (64 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... jdk tool chain is supported checking for javac... yes checking for Python 3... /usr/bin/python3 configure: creating 'Makefile.config.linux.x86_64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java build output path: /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java includedir: /usr/include bindir: /usr/bin libdir: /usr/lib sharedir: /usr/share javadir: /usr/jar configured with: "'--build=x86_64-linux-gnu' '--prefix=/usr' '--' '--source=1.7'" CONFIGURING ngs-python Configuring NGS-PYTHON package checking system type... Linux checking OS distributor... checking machine architecture... x86_64 checking for supported architecture... x86_64 (64 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... gcc tool chain is supported checking for g++... yes checking for Python 3... /usr/bin/python3 checking whether gcc accepts -Wno-array-bounds... yes checking whether g++ accepts -static-libstdc++... no checking for ngs-sdk package... configure: optional ngs-sdk package not found: skipped. checking for ncbi-vdb package... configure: optional ncbi-vdb package not found: skipped. configure: creating 'ld.linux.exe_cmd.sh' configure: creating 'Makefile.config.linux.x86_64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-python/x86_64-linux-gnu/ngs-python build output path: /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-python/x86_64-linux-gnu/ngs-python/linux/gcc/x86_64/rel includedir: /usr/include bindir: /usr/bin libdir: /usr/lib sharedir: /usr/share pythondir: /usr CC = gcc -c CPP = g++ configured with: "'--build=x86_64-linux-gnu' '--prefix=/usr' '--' '--source=1.7'" make[1]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9' jh_linkjars -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9' #dh_auto_build --sourcedirectory=ngs-sdk echo "DEBPKGNAME: EBPKGNAME" DEBPKGNAME: EBPKGNAME dh_auto_build --sourcedirectory=ngs-sdk cd ngs-sdk && make -j4 make[2]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk' make[3]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch' make[3]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language' make[3]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter' make[4]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++' make[4]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java' mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadCollectionItf.pic.o jni_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++ g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceSequence.pic.o ReferenceSequence.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o jni_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceIterator.pic.o ReferenceIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceItf.pic.o jni_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Reference.pic.o Reference.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o jni_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupIterator.pic.o PileupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupIteratorItf.pic.o jni_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Pileup.pic.o Pileup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupItf.pic.o jni_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEventIterator.pic.o PileupEventIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o jni_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEvent.pic.o PileupEvent.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventItf.pic.o jni_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/AlignmentIterator.pic.o AlignmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o jni_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentItf.pic.o jni_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD ar rc /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadCollectionItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupEventItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceSequenceItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/AlignmentItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadGroupItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/FragmentItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StatisticsItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StringItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/Refcount.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrorMsg.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrBlock.pic.o rm -f /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.2 ln -s libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.2 rm -f /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a ln -s libngs-adapt-c++.a.2 /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a rm -f /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++-static.a ln -s libngs-adapt-c++.a /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++-static.a make[3]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/adapter' make[4]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python' mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentItf.pic.o py_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o jni_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupItf.pic.o jni_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o py_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentItf.pic.o py_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadIteratorItf.pic.o jni_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/FragmentIterator.pic.o FragmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentIteratorItf.pic.o py_FragmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadItf.pic.o jni_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Fragment.pic.o Fragment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PackageItf.pic.o py_PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_FragmentItf.pic.o jni_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Statistics.pic.o Statistics.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventItf.pic.o py_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_StatisticsItf.pic.o jni_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_Package.pic.o jni_Package.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD ar rc /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadCollection.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceSequence.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceIterator.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Reference.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupIterator.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Pileup.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEventIterator.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEvent.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/AlignmentIterator.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Alignment.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroupIterator.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroup.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadIterator.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Read.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/FragmentIterator.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Fragment.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Statistics.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/StringRef.pic.o make[4]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/c++' g++ -c -std=c++11 -o 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-I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_Refcount.pic.o jni_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ErrorMsg.pic.o jni_ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD ar rc /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadCollectionItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceItf.pic.o 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/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PackageItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StringItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/Refcount.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/VTable.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrBlock.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrorMsg.pic.o make[3]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/dispatch' g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD ar rc /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-java.a /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadCollectionItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupIteratorItf.pic.o 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/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD ar rc /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentIteratorItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PackageItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupIteratorItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadCollectionItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadIteratorItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StatisticsItf.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_Refcount.pic.o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StringItf.pic.o make[4]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language/python' make[3]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/language' make[3]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk' rm -rf /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++ mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++ ( cd /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++; ar x /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a; ar t /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-btETL1\/ngs-sdk-2.10.9\/ngs-sdk\/x86_64-linux-gnu\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-bind-c++\/\1/' > /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++/manifest ) rm -rf /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp rm -rf /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java rm -rf /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python ( cd /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp; ar x /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a; ar t /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-btETL1\/ngs-sdk-2.10.9\/ngs-sdk\/x86_64-linux-gnu\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-disp\/\1/' > /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp/manifest ) mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python ( cd /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java; ar x /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-java.a; ar t /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-btETL1\/ngs-sdk-2.10.9\/ngs-sdk\/x86_64-linux-gnu\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-bind-java\/\1/' > /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java/manifest ) ( cd /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python; ar x /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a; ar t /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-btETL1\/ngs-sdk-2.10.9\/ngs-sdk\/x86_64-linux-gnu\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-bind-python\/\1/' > /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python/manifest ) ( ar rc /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a.2.10.9 `cat /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++/manifest /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp/manifest` ) g++ -DNDEBUG -O3 -shared -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.2.10.9 -Wl,-soname=libngs-sdk.so.2 `cat /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java/manifest /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python/manifest` -L/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib -lngs-disp rm -f /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a.2 ln -s libngs-c++.a.2.10.9 /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a.2 rm -f /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a ln -s libngs-c++.a.2 /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a rm -f /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++-static.a ln -s libngs-c++.a /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++-static.a rm -f /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.2 ln -s libngs-sdk.so.2.10.9 /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.2 rm -f /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so ln -s libngs-sdk.so.2 /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so make[3]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk' make[2]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk' # Remove ngs-bam generation, expects ngs-sdk and cannot find a way # to specify it #cd ngs-bam && LD_LIBRARY_PATH=../ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib ./configure --build=x86_64-linux-gnu --prefix=/usr --with-ngs-sdk-prefix=../ngs-sdk #dh_auto_build --sourcedirectory=ngs-bam dh_auto_build --sourcedirectory=ngs-java -- JAVAC="javac -source 1.7 -target 1.7" cd ngs-java && make -j4 "JAVAC=javac -source 1.7 -target 1.7" make[2]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java' make[3]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java' mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls javac -source 1.7 -target 1.7 /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/ErrorMsg.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/Statistics.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/Fragment.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/FragmentIterator.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/Read.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/ReadIterator.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/ReadGroup.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/ReadGroupIterator.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/Alignment.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/AlignmentIterator.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/PileupEvent.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/PileupEventIterator.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/Pileup.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/PileupIterator.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/Reference.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/ReferenceIterator.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/ReadCollection.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/Package.java -d /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls -classpath /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls -sourcepath /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls/ngs-java-api ( cd /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/; jar cf /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-src.jar `find gov ngs -name "*.java"`; chmod -x,o-w,g+w /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-src.jar ) || ( rm -f /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-src.jar && false ) Generating javadocs... javac -source 1.7 -target 1.7 /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/examples/examples/AlignTest.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/examples/examples/AlignSliceTest.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/examples/examples/FragTest.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/examples/examples/PileupTest.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/examples/examples/RefTest.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/examples/examples/ReadGroupTest.java -d /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls -classpath /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls -sourcepath /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls/ngs-examples warning: [options] bootstrap class path not set in conjunction with -source 7 warning: [options] bootstrap class path not set in conjunction with -source 7 1 warning javac -source 1.7 -target 1.7 /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/Refcount.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/StatisticsItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/FragmentItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/FragmentIteratorItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadIteratorItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadGroupItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadGroupIteratorItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/AlignmentItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/AlignmentIteratorItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/PileupEventItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/PileupEventIteratorItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/PileupItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/PileupIteratorItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReferenceItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReferenceIteratorItf.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadCollectionItf.java -d /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls -classpath /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls -sourcepath /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls/ngs-java-itf warning: [options] bootstrap class path not set in conjunction with -source 7 Creating destination directory: "/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/javadoc/" Note: /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/ngs/itf/Refcount.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 1 warning ( cd /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls; jar cf /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-examples.jar `find examples -name "*.class"`; chmod -x,o-w,g+w /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-examples.jar ) || ( rm -f /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-examples.jar && false ) Note: /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/ngs/itf/Refcount.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 1 warning javac -source 1.7 -target 1.7 /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/DownloadManager.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/FileCreator.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/HttpManager.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibDependencies.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibManager.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibPathIterator.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibVersionChecker.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LMProperties.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/Logger.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/Manager.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/NGS.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/Version.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryLoadError.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryNotFoundError.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryIncompatibleVersionError.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/ConnectionProblemCause.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/DownloadDisabledCause.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/InvalidLibraryCause.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/JvmErrorCause.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/LibraryLoadCause.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/OutdatedJarCause.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/PrereleaseReqLibCause.java /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/UnsupportedArchCause.java -d /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls -classpath /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls -sourcepath /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls/ngs-java-ncbi ( cd /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/javadoc ; jar cf /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-doc.jar `find . -type f`; chmod -x,o-w,g+w /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-doc.jar ) || ( rm -f /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-doc.jar && false ) warning: [options] bootstrap class path not set in conjunction with -source 7 1 warning ( cd /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/cls; jar cf /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-java.jar `find . -name "*.class"`; chmod -x,o-w,g+w /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-java.jar ) || ( rm -f /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java/x86_64-linux-gnu/ngs-java/jar/ngs-java.jar && false ) make[3]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java' make[2]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-java' markdown README.md > README.html make[1]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9' make -C ngs-sdk/test make[2]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/test' make[3]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/test/test_engine' mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/test/test_engine g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/test/test_engine/test_engine.pic.o test_engine.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/test/test_engine -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -DNDEBUG -O3 --shared -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libtest_engine.so /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/test/test_engine/test_engine.pic.o -L/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib -L/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib -lngs-adapt-c++ -lngs-bind-c++ -lngs-disp make[3]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/test/test_engine' make[3]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test' mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/bin mkdir -p /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/test/ngs-test g++ -c -std=c++11 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/test/ngs-test/main.o main.cpp -DNDEBUG -O3 -I. -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/x86_64 -MD g++ -DNDEBUG -O3 -o /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/bin/test-ngs /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/obj/test/ngs-test/main.o -L/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib -L/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/ilib -ltest_engine -lngs-bind-c++ -lngs-disp make[3]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test' make[2]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/test' # Tests of Java binding disabled because need external lib ncbi-vdb, # not available in Debian at this time #CLASSPATH=../x86_64-linux-gnu/ngs-java/jar/ngs-java.jar LD_LIBRARY_PATH=ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib: make -C ngs-java/examples #CLASSPATH=../x86_64-linux-gnu/ngs-java/jar/ngs-java.jar LD_LIBRARY_PATH=../../ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib: make -C ngs-java/examples run_all make[1]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-a \ --exclude-la \ --movedev "ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib/*.a*" usr/lib/x86_64-linux-gnu \ --movedev "ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/*/rel/ilib/*.a" usr/lib/x86_64-linux-gnu \ --movedev ngs-sdk/ngs usr/include \ ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib/libngs-sdk.so Library package automatic movement utility set -e install -d -m 755 debian/libngs-sdk-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libngs-sdk2/usr/lib/x86_64-linux-gnu mv ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so debian/libngs-sdk-dev/usr/lib/x86_64-linux-gnu mv /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.2 debian/libngs-sdk2/usr/lib/x86_64-linux-gnu mv /build/ngs-sdk-btETL1/ngs-sdk-2.10.9/ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.2.10.9 debian/libngs-sdk2/usr/lib/x86_64-linux-gnu PKGDEV=libngs-sdk-dev PKGSHL=libngs-sdk2 install -d -m 755 debian/libngs-sdk-dev/usr/lib/x86_64-linux-gnu mv ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib/*.a* debian/libngs-sdk-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libngs-sdk-dev/usr/lib/x86_64-linux-gnu mv ngs-sdk/x86_64-linux-gnu/ngs-sdk/linux/gcc/*/rel/ilib/*.a debian/libngs-sdk-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libngs-sdk-dev/usr/include mv ngs-sdk/ngs debian/libngs-sdk-dev/usr/include make[1]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9' debian/rules override_dh_install make[1]: Entering directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9' dh_install -ppython3-ngs set -e && for i in 3.9; do \ cd ngs-python ; \ python$i ./setup.py install --install-layout=deb --root ../debian/python3-ngs; \ cd .. ; \ done /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'include_package_data' warnings.warn(msg) running install running build running build_py creating build creating build/lib creating build/lib/ngs copying ngs/Fragment.py -> build/lib/ngs copying ngs/Alignment.py -> build/lib/ngs copying ngs/LibChecker.py -> build/lib/ngs copying ngs/Statistics.py -> build/lib/ngs copying ngs/PileupIterator.py -> build/lib/ngs copying ngs/Package.py -> build/lib/ngs copying ngs/__init__.py -> build/lib/ngs copying ngs/Pileup.py -> build/lib/ngs copying ngs/Reference.py -> build/lib/ngs copying ngs/Read.py -> build/lib/ngs copying ngs/PileupEventIterator.py -> build/lib/ngs copying ngs/ReadGroup.py -> build/lib/ngs copying ngs/ReferenceIterator.py -> build/lib/ngs copying ngs/AlignmentIterator.py -> build/lib/ngs copying ngs/Refcount.py -> build/lib/ngs copying ngs/String.py -> build/lib/ngs copying ngs/FragmentIterator.py -> build/lib/ngs copying ngs/ReadCollection.py -> build/lib/ngs copying ngs/LibManager.py -> build/lib/ngs copying ngs/ReferenceSequence.py -> build/lib/ngs copying ngs/ErrorMsg.py -> build/lib/ngs copying ngs/ReadIterator.py -> build/lib/ngs copying ngs/ReadGroupIterator.py -> build/lib/ngs copying ngs/PileupEvent.py -> build/lib/ngs running install_lib creating ../debian/python3-ngs creating ../debian/python3-ngs/usr creating ../debian/python3-ngs/usr/lib creating ../debian/python3-ngs/usr/lib/python3 creating ../debian/python3-ngs/usr/lib/python3/dist-packages creating ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Fragment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Alignment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/LibChecker.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Statistics.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Package.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/__init__.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Pileup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Reference.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Read.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupEventIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadGroup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReferenceIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/AlignmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Refcount.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/String.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/FragmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadCollection.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/LibManager.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReferenceSequence.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ErrorMsg.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadGroupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupEvent.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Fragment.py to Fragment.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Alignment.py to Alignment.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibChecker.py to LibChecker.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Statistics.py to Statistics.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupIterator.py to PileupIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Package.py to Package.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/__init__.py to __init__.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Pileup.py to Pileup.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Reference.py to Reference.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Read.py to Read.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroup.py to ReadGroup.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Refcount.py to Refcount.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/String.py to String.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/FragmentIterator.py to FragmentIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadCollection.py to ReadCollection.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibManager.py to LibManager.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ErrorMsg.py to ErrorMsg.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadIterator.py to ReadIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEvent.py to PileupEvent.cpython-39.pyc running install_egg_info Writing ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs-1.0.egg-info find debian -name "*.pyc" -delete find debian -type d -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/ngs-sdk-btETL1/ngs-sdk-2.10.9' jh_installjavadoc -a dh_installdocs -a dh_installchangelogs -a dh_python3 -a dh_perl -a dh_link -a jh_installlibs -a jh_classpath -a jh_manifest -a jh_depends -a mh_installpoms -a mh_linkjars --skip-clean-poms -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dwz: debian/libngs-sdk2/usr/lib/x86_64-linux-gnu/libngs-sdk.so.2.10.9: .debug_info section not present dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libngs-sdk2' in '../libngs-sdk2_2.10.9-1_amd64.deb'. dpkg-deb: building package 'libngs-sdk-dev' in '../libngs-sdk-dev_2.10.9-1_amd64.deb'. dpkg-deb: building package 'python3-ngs' in '../python3-ngs_2.10.9-1_amd64.deb'. dpkg-deb: building package 'libngs-sdk2-dbgsym' in '../libngs-sdk2-dbgsym_2.10.9-1_amd64.deb'. dpkg-deb: building package 'libngs-java' in '../libngs-java_2.10.9-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../ngs-sdk_2.10.9-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/ngs-sdk-btETL1 /tmp/ngs-sdk-2.10.9-15gg_5vr3 I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_builduser W: deleting files in /tmp: hsperfdata_root I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.MuZYe0QYX_... I: success in 866.1929 seconds md5: libngs-java_2.10.9-1_amd64.deb: OK md5: libngs-sdk-dev_2.10.9-1_amd64.deb: OK md5: libngs-sdk2-dbgsym_2.10.9-1_amd64.deb: OK md5: libngs-sdk2_2.10.9-1_amd64.deb: OK md5: python3-ngs_2.10.9-1_amd64.deb: OK sha1: libngs-java_2.10.9-1_amd64.deb: OK sha1: libngs-sdk-dev_2.10.9-1_amd64.deb: OK sha1: libngs-sdk2-dbgsym_2.10.9-1_amd64.deb: OK sha1: libngs-sdk2_2.10.9-1_amd64.deb: OK sha1: python3-ngs_2.10.9-1_amd64.deb: OK sha256: libngs-java_2.10.9-1_amd64.deb: OK sha256: libngs-sdk-dev_2.10.9-1_amd64.deb: OK sha256: libngs-sdk2-dbgsym_2.10.9-1_amd64.deb: OK sha256: libngs-sdk2_2.10.9-1_amd64.deb: OK sha256: python3-ngs_2.10.9-1_amd64.deb: OK Checksums: OK