Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/n/ngmlr/ngmlr_0.2.7+dfsg-4+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/ngmlr-0.2.7+dfsg-4+b1d7j3owfv/ngmlr_0.2.7+dfsg-4+b1_amd64.buildinfo Get source package info: ngmlr=0.2.7+dfsg-4 Source URL: http://snapshot.notset.fr/mr/package/ngmlr/0.2.7+dfsg-4/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-6 bsdutils=1:2.36.1-6 build-essential=12.9 bzip2=1.0.8-4 cmake=3.18.4-1+b1 cmake-data=3.18.4-1 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.10.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210118-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-3 gettext-base=0.21-3 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblkid1=2.36.1-6 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.45.6-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libcurl3-gnutls=7.74.0-1 libcurl4=7.74.0-1 libcurl4-gnutls-dev=7.74.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.256 libdebhelper-perl=13.3.1 libdeflate-dev=1.7-1 libdeflate0=1.7-1 libdpkg-perl=1.20.7.1 libelf1=0.182-3 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.10.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-5 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libhogweed6=3.6-2 libhts-dev=1.11-4 libhts3=1.11-4 libicu67=67.1-6 libidn2-0=2.3.0-5 libisl23=0.23-1 libitm1=10.2.1-6 libjsoncpp24=1.9.4-4 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libldap-2.4-2=2.4.57+dfsg-1 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma-dev=5.2.5-1.0 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-6 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libprocps8=2:3.3.16-5 libpsl5=0.21.0-1.1 libquadmath0=10.2.1-6 librhash0=1.4.1-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsigsegv2=2.12-3 libsimde-dev=0.7.2-3 libsmartcols1=2.36.1-6 libssh2-1=1.9.0-2 libssl1.1=1.1.1i-2 libssw-dev=1.1-12+b1 libssw0=1.1-12+b1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.2-5 libtasn1-6=4.16.0-2 libtclap-dev=1.2.3-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.2-5 libunistring2=0.9.10-4 libuuid1=2.36.1-6 libuv1=1.40.0-1 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.9-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 po-debconf=1.0.21+nmu1 procps=2:3.3.16-5 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 util-linux=2.36.1-6 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210220T171031Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210127T084213Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d ngmlr=0.2.7+dfsg-4 && mkdir -p /build/ngmlr-VJ90Bp && dpkg-source --no-check -x /*.dsc /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg && cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg && { printf '%s' 'ngmlr (0.2.7+dfsg-4+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild using libsimde-dev 0.7.2-3 -- amd64 / i386 Build Daemon (x86-csail-01) Wed, 27 Jan 2021 09:54:10 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/ngmlr-VJ90Bp" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1611741250" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/ngmlr-VJ90Bp /tmp/ngmlr-0.2.7+dfsg-4+b1d7j3owfv bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210127T084213Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.X8nhFwcL5n as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.X8nhFwcL5n Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210127T084213Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210127T084213Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1015 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4661 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210220T171031Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210127T084213Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.X8nhFwcL5n Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210220T171031Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210127T084213Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210220T171031Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210220T171031Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210220T171031Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210220T171031Z unstable/main amd64 Packages [11.6 MB] Fetched 34.4 MB in 34s (1008 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.X8nhFwcL5n I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d ngmlr=0.2.7+dfsg-4 && mkdir -p /build/ngmlr-VJ90Bp && dpkg-source --no-check -x /*.dsc /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg && cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg && { printf '%s' 'ngmlr (0.2.7+dfsg-4+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild using libsimde-dev 0.7.2-3 -- amd64 / i386 Build Daemon (x86-csail-01) Wed, 27 Jan 2021 09:54:10 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/ngmlr-VJ90Bp"' exec /tmp/mmdebstrap.X8nhFwcL5n Reading package lists... NOTICE: 'ngmlr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ngmlr.git Please use: git clone https://salsa.debian.org/med-team/ngmlr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 676 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main ngmlr 0.2.7+dfsg-4 (dsc) [2119 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main ngmlr 0.2.7+dfsg-4 (tar) [668 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main ngmlr 0.2.7+dfsg-4 (diff) [6468 B] Fetched 676 kB in 1s (915 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'ngmlr_0.2.7+dfsg-4.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting ngmlr in /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg dpkg-source: info: unpacking ngmlr_0.2.7+dfsg.orig.tar.gz dpkg-source: info: unpacking ngmlr_0.2.7+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-libs.patch dpkg-source: info: applying spellings.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying fix-type-incompatibilities.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1611741250" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.X8nhFwcL5n dpkg-buildpackage: info: source package ngmlr dpkg-buildpackage: info: source version 0.2.7+dfsg-4+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-csail-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --buildsystem cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake dh_auto_configure -a -O--buildsystem=cmake cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu dh_auto_build -a -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg -B/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/depend make[3]: Entering directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/depend cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/recompile_always.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ngmlr.dir/DependInfo.cmake --color= Dependee "/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/recompile_always.dir/DependInfo.cmake" is newer than depender "/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/recompile_always.dir/depend.internal". Dependee "/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/recompile_always.dir/depend.internal". Scanning dependencies of target recompile_always make[3]: Leaving directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/build make[3]: Entering directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && touch /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/main.cpp make[3]: Leaving directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' Dependee "/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ngmlr.dir/DependInfo.cmake" is newer than depender "/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ngmlr.dir/depend.internal". 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[ 0%] Built target recompile_always Scanning dependencies of target ngmlr make[3]: Leaving directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/build make[3]: Entering directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' [ 4%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o [ 8%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/CS.cpp [ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/AlignmentMatrix.cpp cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ArgParser.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/ArgParser.cpp [ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/AlignmentMatrixFast.cpp [ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/CSstatic.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/CSstatic.cpp [ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/ConvexAlign.cpp [ 28%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/ConvexAlignFast.cpp [ 32%] Building CXX object src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/LinearRegression.cpp [ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/Logging.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/Logging.cpp [ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/MappedRead.cpp /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/Logging.cpp: In function ‘void __Log::LogToConsole(bool, int, const char*, const char*, ...)’: /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/Logging.cpp:100:2: warning: second parameter of ‘va_start’ not last named argument [-Wvarargs] 100 | va_start(args, count); | ^~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/main.cpp /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’: /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/Logging.cpp:125:27: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=] 125 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, | ^~~~ /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/Logging.cpp:125:22: note: directive argument in the range [-2147483647, 2147483647] 125 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/Logging.cpp:7: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 20 and 72 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/main.cpp:56:146: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^ In file included from /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/Log.h:8, from /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/NGM.h:11, from /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/main.cpp:5: /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/main.cpp:56:101: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^~~~~~~~ /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/ILog.h:44:56: note: in definition of macro ‘Message’ 44 | #define Message(s, ...) _Message(0, module_name, s , ##__VA_ARGS__) | ^~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/NGM.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/NGM.cpp [ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/NGMTask.cpp [ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/AlignmentBuffer.cpp [ 60%] Building CXX object src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/PrefixTable.cpp [ 64%] Building CXX object src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/ReadProvider.cpp [ 68%] Building CXX object src/CMakeFiles/ngmlr.dir/SamParser.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/SamParser.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/SamParser.cpp [ 72%] Building CXX object src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/SAMWriter.cpp [ 76%] Building CXX object src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/SequenceProvider.cpp [ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp:17:3: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 17 | throw "Elements left in buffer!"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp:17:3: note: in C++11 destructors default to ‘noexcept’ [ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/ScoreBuffer.cpp [ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/StrippedSW.cpp [ 92%] Building CXX object src/CMakeFiles/ngmlr.dir/unix.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/unix.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/unix.cpp [ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -c /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/src/unix_threads.cpp [100%] Linking CXX executable ../../bin/ngmlr-0.2.7/ngmlr cd /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngmlr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o CMakeFiles/ngmlr.dir/ArgParser.cpp.o CMakeFiles/ngmlr.dir/CS.cpp.o CMakeFiles/ngmlr.dir/CSstatic.cpp.o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o CMakeFiles/ngmlr.dir/Logging.cpp.o CMakeFiles/ngmlr.dir/MappedRead.cpp.o CMakeFiles/ngmlr.dir/main.cpp.o CMakeFiles/ngmlr.dir/NGM.cpp.o CMakeFiles/ngmlr.dir/NGMTask.cpp.o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o CMakeFiles/ngmlr.dir/SamParser.cpp.o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o CMakeFiles/ngmlr.dir/unix.cpp.o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -o ../../bin/ngmlr-0.2.7/ngmlr -lz -lpthread -lssw make[3]: Leaving directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' [100%] Built target ngmlr make[2]: Leaving directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' dh_auto_test -a -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake dh_auto_install -a -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/ngmlr-VJ90Bp/ngmlr-0.2.7\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg -B/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/debian/ngmlr/usr/bin/ngmlr make[1]: Leaving directory '/build/ngmlr-VJ90Bp/ngmlr-0.2.7+dfsg/obj-x86_64-linux-gnu' dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake dh_installexamples -a -O--buildsystem=cmake dh_installman -a -O--buildsystem=cmake dh_installsystemduser -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake dh_fixperms -a -O--buildsystem=cmake dh_missing -a -O--buildsystem=cmake dh_dwz -a -a -O--buildsystem=cmake dh_strip -a -a -O--buildsystem=cmake dh_makeshlibs -a -a -O--buildsystem=cmake dh_shlibdeps -a -a -O--buildsystem=cmake dh_installdeb -a -O--buildsystem=cmake dh_gencontrol -a -O--buildsystem=cmake dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+dfsg-4+b1_amd64.deb'. dpkg-deb: building package 'ngmlr-dbgsym' in '../ngmlr-dbgsym_0.2.7+dfsg-4+b1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../ngmlr_0.2.7+dfsg-4+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/ngmlr-VJ90Bp /tmp/ngmlr-0.2.7+dfsg-4+b1d7j3owfv I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.X8nhFwcL5n... I: success in 495.4183 seconds md5: ngmlr-dbgsym_0.2.7+dfsg-4+b1_amd64.deb: OK md5: ngmlr_0.2.7+dfsg-4+b1_amd64.deb: OK sha1: ngmlr-dbgsym_0.2.7+dfsg-4+b1_amd64.deb: OK sha1: ngmlr_0.2.7+dfsg-4+b1_amd64.deb: OK sha256: ngmlr-dbgsym_0.2.7+dfsg-4+b1_amd64.deb: OK sha256: ngmlr_0.2.7+dfsg-4+b1_amd64.deb: OK Checksums: OK