Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/n/nco/nco_5.0.7-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/nco-5.0.7-1yftll9_m/nco_5.0.7-1_amd64.buildinfo Get source package info: nco=5.0.7-1 Source URL: http://snapshot.notset.fr/mr/package/nco/5.0.7-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=antlr=2.7.7+dfsg-12 autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.38-3 binutils-common=2.38-3 binutils-x86-64-linux-gnu=2.38-3 bison=2:3.8.2+dfsg-1 bsdextrautils=2.38-4 bsdutils=1:2.38-4 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 ca-certificates-java=20190909 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.3.0-1 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.7.1 debianutils=5.7-0.2 default-jre-headless=2:1.11-72 dh-autoreconf=20 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.7 dpkg-dev=1.21.7 dwz=0.14-1 file=1:5.41-4 findutils=4.9.0-3 flex=2.6.4-8 fontconfig-config=2.13.1-4.4 fonts-dejavu-core=2.37-2 g++=4:11.2.0-2 g++-11=11.3.0-1 gcc=4:11.2.0-2 gcc-11=11.3.0-1 gcc-11-base=11.3.0-1 gcc-12-base=12-20220428-1 gettext=0.21-6 gettext-base=0.21-6 grep=3.7-1 groff-base=1.22.4-8 gsl-bin=2.7.1+dfsg-3 gzip=1.12-1 hdf5-helpers=1.10.7+repack-4 hostname=3.23 icu-devtools=71.1-2 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 java-common=0.72 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libantlr-dev=2.7.7+dfsg-12+b1 libantlr-java=2.7.7+dfsg-12 libarchive-zip-perl=1.68-1 libasan6=11.3.0-1 libasound2=1.2.6.1-2+b1 libasound2-data=1.2.6.1-2 libatomic1=12-20220428-1 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbinutils=2.38-3 libblkid1=2.38-4 libbrotli1=1.0.9-2+b3 libbz2-1.0=1.0.8-5 libc-bin=2.33-7 libc-dev-bin=2.33-7 libc6=2.33-7 libc6-dev=2.33-7 libcap-ng0=0.7.9-2.2+b2 libcap2=1:2.44-1 libcc1-0=12-20220428-1 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-3 libctf0=2.38-3 libcups2=2.4.1op1-2 libcurl3-gnutls=7.83.0-1 libcurl4=7.83.0-1 libcurl4-openssl-dev=7.83.0-1 libdap-dev=3.20.9-1 libdap27=3.20.9-1 libdapclient6v5=3.20.9-1 libdapserver7v5=3.20.9-1 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.14.0-1 libdebconfclient0=0.262 libdebhelper-perl=13.7.1 libdpkg-perl=1.21.7 libelf1=0.186-1 libexpat1=2.4.8-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libfontconfig1=2.13.1-4.4 libfreetype6=2.11.1+dfsg-2 libgcc-11-dev=11.3.0-1 libgcc-s1=12-20220428-1 libgcrypt20=1.10.1-2 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgfortran5=12-20220428-1 libglib2.0-0=2.72.1-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.4-2 libgomp1=12-20220428-1 libgpg-error0=1.45-2 libgraphite2-3=1.3.14-1 libgsl-dev=2.7.1+dfsg-3 libgsl27=2.7.1+dfsg-3 libgslcblas0=2.7.1+dfsg-3 libgssapi-krb5-2=1.19.2-2+b1 libharfbuzz0b=2.7.4-1+b1 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libicu-dev=71.1-2 libicu71=71.1-2 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=12-20220428-1 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libk5crypto3=1.19.2-2+b1 libkeyutils1=1.6.1-3 libkrb5-3=1.19.2-2+b1 libkrb5support0=1.19.2-2+b1 liblcms2-2=2.12~rc1-2 libldap-2.5-0=2.5.11+dfsg-1 liblsan0=12-20220428-1 liblz4-1=1.9.3-2 liblzma5=5.2.5-2.1 libmagic-mgc=1:5.41-4 libmagic1=1:5.41-4 libmount1=2.38-4 libmpc3=1.2.1-2 libmpfr6=4.1.0-3 libnetcdf-dev=1:4.8.1-1 libnetcdf19=1:4.8.1-1 libnettle8=3.7.3-1 libnghttp2-14=1.47.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.33-1 libnss3=2:3.77-1 libp11-kit0=0.24.1-1 libpam-modules=1.4.0-13 libpam-modules-bin=1.4.0-13 libpam-runtime=1.4.0-13 libpam0g=1.4.0-13 libpcre2-8-0=10.40-1 libpcre3=2:8.39-14 libpcsclite1=1.9.5-3 libperl5.34=5.34.0-4 libpipeline1=1.5.6-1 libpng16-16=1.6.37-5 libpsl5=0.21.0-1.2 libquadmath0=12-20220428-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.28+dfsg-4 libsasl2-modules-db=2.1.28+dfsg-4 libseccomp2=2.5.4-1 libselinux1=3.3-1+b2 libsigsegv2=2.14-1 libsmartcols1=2.38-4 libsqlite3-0=3.38.3-1 libssh2-1=1.10.0-3 libssl-dev=1.1.1n-1 libssl1.1=1.1.1n-1 libstdc++-11-dev=11.3.0-1 libstdc++6=12-20220428-1 libsub-override-perl=0.09-2 libsystemd0=250.4-1 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libtext-unidecode-perl=1.30-1 libtinfo6=6.3+20220423-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-3 libtsan0=11.3.0-1 libubsan1=12-20220428-1 libuchardet0=0.0.7-1 libudev1=250.4-1 libudunits2-0=2.2.28-4 libudunits2-data=2.2.28-4 libudunits2-dev=2.2.28-4 libunistring2=1.0-1 libuuid1=2.38-4 libxml-libxml-perl=2.0207+dfsg+really+2.0134-1 libxml-namespacesupport-perl=1.12-1.1 libxml-sax-base-perl=1.09-1.1 libxml-sax-perl=1.02+dfsg-3 libxml2=2.9.13+dfsg-1+b1 libxml2-dev=2.9.13+dfsg-1+b1 libzstd1=1.5.2+dfsg-1 linux-libc-dev=5.17.3-1 login=1:4.11.1+dfsg1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3+b1 ncurses-base=6.3+20220423-1 ncurses-bin=6.3+20220423-1 netcdf-bin=1:4.8.1-1 openjdk-11-jre-headless=11.0.15+10-1 openssl=1.1.1n-1 patch=2.7.6-7 perl=5.34.0-4 perl-base=5.34.0-4 perl-modules-5.34=5.34.0-4 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.03-1 tar=1.34+dfsg-1 tex-common=6.17 texinfo=6.8-4+b1 ucf=3.0043 util-linux=2.38-4 util-linux-extra=2.38-4 uuid-dev=2.38-4 xz-utils=5.2.5-2.1 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220508T025227Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220508T025227Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220625T145416Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220501T215056Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d nco=5.0.7-1 && mkdir -p /build/nco-Em2TK8 && dpkg-source --no-check -x /*.dsc /build/nco-Em2TK8/nco-5.0.7 && chown -R builduser:builduser /build/nco-Em2TK8" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/nco-Em2TK8/nco-5.0.7 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1651548877" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/nco-Em2TK8 /tmp/nco-5.0.7-1yftll9_m bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.PyL4VSyl5j as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.PyL4VSyl5j Reading package lists... Building dependency tree... util-linux is already the newest version (2.38-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable/main amd64 libfakeroot amd64 1.28-1 [48.2 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable/main amd64 fakeroot amd64 1.28-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 1s (226 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4627 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.28-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.28-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.28-1_amd64.deb ... Unpacking fakeroot (1.28-1) ... Setting up libfakeroot:amd64 (1.28-1) ... Setting up fakeroot (1.28-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220508T025227Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220508T025227Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220625T145416Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220501T215056Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.PyL4VSyl5j Get:1 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm InRelease [130 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220625T145416Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main Sources [11.9 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main amd64 Packages [11.4 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220625T145416Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220625T145416Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220625T145416Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220625T145416Z unstable/main amd64 Packages [12.5 MB] Fetched 36.1 MB in 29s (1225 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.PyL4VSyl5j I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d nco=5.0.7-1 && mkdir -p /build/nco-Em2TK8 && dpkg-source --no-check -x /*.dsc /build/nco-Em2TK8/nco-5.0.7 && chown -R builduser:builduser /build/nco-Em2TK8"' exec /tmp/mmdebstrap.PyL4VSyl5j Reading package lists... NOTICE: 'nco' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debian-gis-team/nco.git Please use: git clone https://salsa.debian.org/debian-gis-team/nco.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5817 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main nco 5.0.7-1 (dsc) [2029 B] Get:2 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main nco 5.0.7-1 (tar) [5802 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220508T025227Z bookworm/main nco 5.0.7-1 (diff) [12.3 kB] Fetched 5817 kB in 5s (1285 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'nco_5.0.7-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting nco in /build/nco-Em2TK8/nco-5.0.7 dpkg-source: info: unpacking nco_5.0.7.orig.tar.gz dpkg-source: info: unpacking nco_5.0.7-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/nco-Em2TK8/nco-5.0.7 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1651548877" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.PyL4VSyl5j dpkg-buildpackage: info: source package nco dpkg-buildpackage: info: source version 5.0.7-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Bas Couwenberg dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem autoconf dh_auto_clean -O--buildsystem=autoconf dh_autoreconf_clean -O--buildsystem=autoconf debian/rules override_dh_clean make[1]: Entering directory '/build/nco-Em2TK8/nco-5.0.7' dh_clean data/big.nc \ data/in_1.nc \ data/in_2.nc \ data/nco_bm.stderr \ debian/rules.old \ doc/nco.info \ doc/nco.info-1 \ doc/nco.info-2 \ doc/nco.info-3 make[1]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7' debian/rules build-arch dh build-arch --buildsystem autoconf dh_update_autotools_config -a -O--buildsystem=autoconf dh_autoreconf -a -O--buildsystem=autoconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'autobld'. libtoolize: copying file 'autobld/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:176: installing 'autobld/compile' configure.ac:162: installing 'autobld/missing' src/nco++/Makefile.am: installing 'autobld/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/nco-Em2TK8/nco-5.0.7' dh_auto_configure -- \ --libdir=/usr/lib/nco \ --disable-nco_cplusplus \ --disable-static \ --disable-udunits \ --enable-dap \ --enable-gsl \ --enable-ncap2 \ --enable-netcdf4 \ --enable-udunits2 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --libdir=/usr/lib/nco --disable-nco_cplusplus --disable-static --disable-udunits --enable-dap --enable-gsl --enable-ncap2 --enable-netcdf4 --enable-udunits2 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu ./configure: line 3543: git: command not found checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking whether yytext is a pointer... yes checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for working memcmp... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for working strtod... yes checking for canonicalize_file_name... yes checking for creat... yes checking for floor... no checking for gethostname... yes checking for getpagesize... yes checking for getrusage... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkstemp... yes checking for pow... no checking for readlink... yes checking for realpath... yes checking for regcomp... yes checking for setlocale... yes checking for sqrt... no checking for strchr... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for egrep... (cached) /bin/grep -E checking for fcntl.h... yes checking for getopt.h... yes checking for libintl.h... yes checking for limits.h... yes checking for locale.h... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for cstdlib... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for ptrdiff_t... yes checking size of int*... 8 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no ################################# # Test for netCDF # ################################ checking for netcdf.h... yes checking for nc_open in -lnetcdf... yes ################################# # Test for netCDF4 support # ################################# checking for gcc options needed to detect all undeclared functions... none needed checking whether NC_CHUNKED is declared... yes configure: netcdf.h contains netCDF4 definitions checking for nc_def_var_chunking in -lnetcdf... yes configure: Good news: Simple program compiles and links to netCDF4 library checking for netcdf_mem.h... yes checking for gcc option to support OpenMP... -fopenmp configure: OpenMP support enabled Beginning generic tests for DAP support Testing for DAP-netCDF support (is DAP in libnetcdf.a?)... checking for daperror in -lnetcdf... yes configure: DAP support enabled checking for getopt_long... yes checking for sinf in -lsunmath... no checking for gettext in -lintl... no checking for res_init in -lresolv... no checking for main in -lsocket... no checking for main in -lthread... no checking for nco_open in -lnco... no checking for nc_inq_format... yes checking for nc_inq_path... yes checking for nc_set_log_level... yes checking for nc_rename_grp... yes checking for getopt... yes checking for getopt_long... (cached) yes checking for atan2... no checking for acosf... no checking for asinf... no checking for atanf... no checking for atan2f... no checking for cosf... no checking for expf... no checking for fabsf... no checking for fmodf... no checking for log10f... no checking for logf... no checking for powf... no checking for sinf... no checking for sqrtf... no checking for tanf... no checking for erff... no checking for erfcf... no checking for gammaf... no checking for acoshf... no checking for asinhf... no checking for atanhf... no checking for coshf... no checking for sinhf... no checking for tanhf... no checking for ceilf... no checking for floorf... no checking for nearbyint... no checking for rint... no checking for round... no checking for trunc... no checking for nearbyintf... no checking for rintf... no checking for roundf... no checking for truncf... no checking for getopt_long... (cached) yes checking for strdup... yes checking for strcasecmp... yes checking for strsep... yes checking for strcasestr... yes checking for htonl... yes checking for htons... yes checking for ntohl... yes checking for ntohs... yes checking for __builtin_bswap16... no checking for __builtin_bswap32... no checking for __builtin_bswap64... no ########################################################## # Sorting out MacOS build parameters # ########################################################## ################################# # Testing for ANTLR support # ################################# checking for runantlr... runantlr configure: antlr library was found checking whether NCO C++ interface library libnco_c++ should be built... no ######################################## # Testing for GSL support # ######################################## configure: These GSL library and header tests must succeed for GSL support: checking for gsl_sf_gamma_inc in -lgsl... yes checking for /usr/include/gsl/gsl_sf_gamma.h... yes configure: GSL support enabled ######################################## # Testing for CCR support # ######################################## checking where to put HDF5 plugins... . checking whether Community Codec Repository library should be used... no checking for regex.h... yes checking for sys/types.h... (cached) yes checking for regexec... yes checking for regcomp... (cached) yes checking for regfree... yes ######################################## # Testing for UDUNITS support # ######################################## checking for XML_ParserCreate in -lexpat... no checking for /usr/include/udunits2/udunits2.h... no checking for /usr/include/udunits2.h... yes checking for /usr/lib/x86_64-linux-gnu/libudunits2.a... yes checking for /usr/lib/i386-linux-gnu/libudunits2.a... no checking for /opt/local/include/udunits2/udunits2.h... no checking for /opt/local/lib/libudunits2.a... no checking for /opt/local/lib/libudunits2.dylib... no checking for ... no configure: WARNING: file UDUNITS2 XML database file was not found but will still attempt to build NCO with UDUnits2 support. configure: NB: Following tests of UDUnits2 library and header must succeed for UDUnits2 support: checking for ut_read_xml in -ludunits2... yes checking for udunits2.h... yes configure: UDUnits2 support enabled checking for ncgen... /usr/bin/ncgen configure: Creating sample netCDF data files for self-tests ############################### # Require Shared Libs? # ############################### checking for makeinfo... yes MAKEINFO_VERSION=6.8 configure: Documentation support enabled checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating src/Makefile config.status: creating src/nco/Makefile config.status: creating man/Makefile config.status: creating src/nco++/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Parameters: AR_FLAGS............. cr CC................... gcc CFLAGS............... -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE CPP.................. gcc -E CPPFLAGS............. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include CXX.................. g++ CXXFLAGS............. -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security ENABLE_CCR........... no ENABLE_DAP........... yes ENABLE_GSL........... yes ENABLE_NETCDF4....... yes ENABLE_OPENMP........ yes ENABLE_UDUNITS....... no ENABLE_UDUNITS2...... yes GSL_ROOT............. /usr HAVE_ANTLR........... runantlr HAVE_MAKEINFO........ yes HAVE_NETCDF4_H....... yes HDF5_PLUGIN_PATH..... . HOST................. HOSTNAME............. 6029c5af1266 LDFLAGS.............. -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu LIBS................. -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 NETCDF_ROOT.......... /usr OPENMP_CFLAGS........ -fopenmp host................. x86_64-pc-linux-gnu install prefix ...... /usr ******************************************************************* Configuration complete. You are now ready to run 'make'. Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). If the build fails, please examine the file 'configure.eg' in the top-level NCO directory. It contains examples known to build NCO for various platforms and compilers. ******************************************************************* make[1]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7' debian/rules override_dh_auto_build make[1]: Entering directory '/build/nco-Em2TK8/nco-5.0.7' dh_auto_build make -j10 make[2]: Entering directory '/build/nco-Em2TK8/nco-5.0.7' make all-recursive make[3]: Entering directory '/build/nco-Em2TK8/nco-5.0.7' Making all in data make[4]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/data' /usr/bin/ncgen -o big.nc big.cdl /usr/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl /build/nco-Em2TK8/nco-5.0.7/src/nco/ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc /usr/bin/ncgen -k netCDF-4 -o in_4.nc in.cdl /bin/bash: line 1: /build/nco-Em2TK8/nco-5.0.7/src/nco/ncks: No such file or directory make[4]: [Makefile:585: in_4c.nc] Error 127 (ignored) /usr/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl /usr/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl /usr/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl /usr/bin/ncgen -k netCDF-4 -o split.nc split.cdl /usr/bin/ncgen -k netCDF-4 -o ref_utf8.nc ref_utf8.cdl make[4]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/data' Making all in src make[4]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/src' Making all in nco make[5]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncatted.o ncatted.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_att_utl.lo nco_att_utl.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_aux.lo nco_aux.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_bnr.lo nco_bnr.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cln_utl.lo nco_cln_utl.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_dmn.lo nco_cnf_dmn.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_typ.lo nco_cnf_typ.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnk.lo nco_cnk.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_arm.lo nco_cnv_arm.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_csm.lo nco_cnv_csm.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncatted.c:103: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnk.c -fPIC -DPIC -o .libs/nco_cnk.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_cnk.h:17, from nco_cnk.c:45: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_aux.c -fPIC -DPIC -o .libs/nco_aux.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_att_utl.c -fPIC -DPIC -o .libs/nco_att_utl.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_aux.h:17, from nco_aux.c:22: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_att_utl.h:21, from nco_att_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_bnr.c -fPIC -DPIC -o .libs/nco_bnr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_arm.c -fPIC -DPIC -o .libs/nco_cnv_arm.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_cnv_arm.h:17, from nco_cnv_arm.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_dmn.c -fPIC -DPIC -o .libs/nco_cnf_dmn.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cln_utl.c -fPIC -DPIC -o .libs/nco_cln_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_csm.c -fPIC -DPIC -o .libs/nco_cnv_csm.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_bnr.h:17, from nco_bnr.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/ctype.h:25, from nco_cln_utl.h:21, from nco_cln_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_cnf_dmn.h:17, from nco_cnf_dmn.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_cnv_csm.h:17, from nco_cnv_csm.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_typ.c -fPIC -DPIC -o .libs/nco_cnf_typ.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_cnf_typ.h:17, from nco_cnf_typ.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_crt.lo nco_crt.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ctl.lo nco_ctl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_crt.c -fPIC -DPIC -o .libs/nco_crt.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from nco_crt.h:55, from nco_crt.c:49: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dbg.lo nco_dbg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ctl.c -fPIC -DPIC -o .libs/nco_ctl.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dmn_utl.lo nco_dmn_utl.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_ctl.h:21, from nco_ctl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_fl_utl.lo nco_fl_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dbg.c -fPIC -DPIC -o .libs/nco_dbg.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_dbg.h:17, from nco_dbg.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dmn_utl.c -fPIC -DPIC -o .libs/nco_dmn_utl.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_dmn_utl.h:21, from nco_dmn_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_fl_utl.c -fPIC -DPIC -o .libs/nco_fl_utl.o In file included from /usr/include/errno.h:25, from nco_fl_utl.h:21, from nco_fl_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_flt.lo nco_flt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_flt.c -fPIC -DPIC -o .libs/nco_flt.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_flt.h:17, from nco_flt.c:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_fl_utl.c: In function ‘nco_fl_nm_prs’: nco_fl_utl.c:1488:45: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] 1488 | (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2); | ^~ nco_fl_utl.c:1488:41: note: directive argument in the range [-2147483648, 2147483645] 1488 | (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2); | ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from nco_fl_utl.h:26, from nco_fl_utl.c:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from nco_flt.h:17, from nco_flt.c:19: In function ‘fprintf’, inlined from ‘nco_flt_prs’ at nco_flt.c:42:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:105:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 105 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_utl.lo nco_grp_utl.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_trv.lo nco_grp_trv.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_kd.lo nco_kd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_utl.c -fPIC -DPIC -o .libs/nco_grp_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_trv.c -fPIC -DPIC -o .libs/nco_grp_trv.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_grp_trv.h:21, from nco_grp_trv.c:14: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/assert.h:35, from nco_grp_utl.h:21, from nco_grp_utl.c:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lmt.lo nco_lmt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_kd.c -fPIC -DPIC -o .libs/nco_kd.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lst_utl.lo nco_lst_utl.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_kd.h:58, from nco_kd.c:72: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lmt.c -fPIC -DPIC -o .libs/nco_lmt.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_lmt.h:21, from nco_lmt.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_map.lo nco_map.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lst_utl.c -fPIC -DPIC -o .libs/nco_lst_utl.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_lst_utl.h:21, from nco_lst_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_md5.lo nco_md5.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_map.c -fPIC -DPIC -o .libs/nco_map.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/11/include/limits.h:203, from /usr/lib/gcc/x86_64-linux-gnu/11/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/11/include/limits.h:34, from nco_map.h:17, from nco_map.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_lst_utl.c: In function ‘nco_fmt_sng_printf_subst’: nco_lst_utl.c:38:89: warning: unknown escape sequence: '\.' 38 | const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */ | ^ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mmr.lo nco_mmr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_md5.c -fPIC -DPIC -o .libs/nco_md5.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_md5.h:22, from nco_md5.c:25: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_msa.lo nco_msa.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mss_val.lo nco_mss_val.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mta.lo nco_mta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mmr.c -fPIC -DPIC -o .libs/nco_mmr.o In file included from /usr/include/errno.h:25, from nco_mmr.h:21, from nco_mmr.c:27: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_msa.c -fPIC -DPIC -o .libs/nco_msa.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_msa.h:21, from nco_msa.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_netcdf.lo nco_netcdf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mss_val.c -fPIC -DPIC -o .libs/nco_mss_val.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mta.c -fPIC -DPIC -o .libs/nco_mta.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_mss_val.h:21, from nco_mss_val.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_mta.h:21, from nco_mta.c:12: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_omp.lo nco_omp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_netcdf.c -fPIC -DPIC -o .libs/nco_netcdf.o In file included from /usr/include/ctype.h:25, from nco_netcdf.h:43, from nco_netcdf.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_pck.lo nco_pck.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_omp.c -fPIC -DPIC -o .libs/nco_omp.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_omp.h:17, from nco_omp.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_pck.c -fPIC -DPIC -o .libs/nco_pck.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_pck.h:17, from nco_pck.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ply.lo nco_ply.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ply_lst.lo nco_ply_lst.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ppc.lo nco_ppc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ply_lst.c -fPIC -DPIC -o .libs/nco_ply_lst.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_prn.lo nco_prn.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ply.c -fPIC -DPIC -o .libs/nco_ply.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from nco_ply_lst.h:16, from nco_ply_lst.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rec_var.lo nco_rec_var.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_ply.h:17, from nco_ply.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ppc.c -fPIC -DPIC -o .libs/nco_ppc.o In file included from /usr/include/ctype.h:25, from nco_ppc.h:17, from nco_ppc.c:13: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_prn.c -fPIC -DPIC -o .libs/nco_prn.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_prn.h:21, from nco_prn.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rec_var.c -fPIC -DPIC -o .libs/nco_rec_var.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_rec_var.h:17, from nco_rec_var.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/stdio.h:866, from nco_pck.h:17, from nco_pck.c:10: In function ‘fprintf’, inlined from ‘nco_pck_map_get’ at nco_pck.c:160:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:105:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 105 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rgr.lo nco_rgr.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rth_flt.lo nco_rth_flt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rgr.c -fPIC -DPIC -o .libs/nco_rgr.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/11/include/limits.h:203, from /usr/lib/gcc/x86_64-linux-gnu/11/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/11/include/limits.h:34, from nco_rgr.h:17, from nco_rgr.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_flt.c -fPIC -DPIC -o .libs/nco_rth_flt.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_rth_flt.h:21, from nco_rth_flt.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rth_utl.lo nco_rth_utl.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_scl_utl.lo nco_scl_utl.c nco_prn.c: In function ‘nco_prn_var_val_lmt’: nco_prn.c:1559:53: warning: ‘%s’ directive writing up to 99 bytes into a region of size 86 [-Wformat-overflow=] 1559 | (void)sprintf(var_sng,"%%s%c%%ld--%%ld%c='%s' %%s",arr_lft_dlm,arr_rgt_dlm,dmn_sng); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:866, from nco_prn.h:22, from nco_prn.c:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 118 bytes into a destination of size 100 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_utl.c -fPIC -DPIC -o .libs/nco_rth_utl.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_rth_utl.h:17, from nco_rth_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scl_utl.c -fPIC -DPIC -o .libs/nco_scl_utl.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_scl_utl.h:21, from nco_scl_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_s1d.lo nco_s1d.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_scm.lo nco_scm.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sld.lo nco_sld.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_s1d.c -fPIC -DPIC -o .libs/nco_s1d.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sng_utl.lo nco_sng_utl.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_s1d.h:17, from nco_s1d.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scm.c -fPIC -DPIC -o .libs/nco_scm.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_scm.h:21, from nco_scm.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sld.c -fPIC -DPIC -o .libs/nco_sld.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_sld.h:17, from nco_sld.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sph.lo nco_sph.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_sng_utl.h:21, from nco_sng_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nco_scm.c: In function ‘nco_vrs_prn’: nco_scm.c:227:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 227 | const char date_cpp[]=__DATE__; /* [sng] Date from C pre-processor */ | ^~~~~~~~ nco_scm.c:228:25: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 228 | const char time_cpp[]=__TIME__; /* [sng] Time from C pre-processor */ | ^~~~~~~~ In file included from /usr/include/string.h:519, from nco_scm.h:22, from nco_scm.c:10: In function ‘strncpy’, inlined from ‘cvs_vrs_prs’ at nco_scm.c:83:14: /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_srm.lo nco_srm.c /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ reading between 1 and 2147483647 bytes from a region of size 0 [-Wstringop-overread] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/string_fortified.h: In function ‘cvs_vrs_prs’: nco_scm.c:34:8: note: at offset 7 into source object ‘cvs_Name’ of size 7 34 | char cvs_Name[]="$Name$"; | ^~~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_avg.lo nco_var_avg.c nco_sng_utl.c: In function ‘nm2sng_cdl’: nco_sng_utl.c:270:41: warning: ‘__builtin___snprintf_chk’ output truncated before the last format character [-Wformat-truncation=] 270 | snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); | ^ In file included from /usr/include/stdio.h:866, from nco_sng_utl.h:21, from nco_sng_utl.c:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:10: note: ‘__builtin___snprintf_chk’ output 5 bytes into a destination of size 4 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sph.c -fPIC -DPIC -o .libs/nco_sph.o nco_sng_utl.c: In function ‘nm2sng_fl’: nco_sng_utl.c:425:41: warning: ‘__builtin___snprintf_chk’ output truncated before the last format character [-Wformat-truncation=] 425 | snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); | ^ In file included from /usr/include/stdio.h:866, from nco_sng_utl.h:21, from nco_sng_utl.c:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:71:10: note: ‘__builtin___snprintf_chk’ output 5 bytes into a destination of size 4 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_sph.h:60, from nco_sph.c:49: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_lst.lo nco_var_lst.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_rth.lo nco_var_rth.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_srm.c -fPIC -DPIC -o .libs/nco_srm.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_srm.h:21, from nco_srm.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_var_avg.h:17, from nco_var_avg.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_lst.c -fPIC -DPIC -o .libs/nco_var_lst.o In file included from /usr/include/assert.h:35, from nco_var_lst.h:21, from nco_var_lst.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_rth.c -fPIC -DPIC -o .libs/nco_var_rth.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_var_rth.h:21, from nco_var_rth.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_scv.lo nco_var_scv.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_utl.lo nco_var_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_scv.c -fPIC -DPIC -o .libs/nco_var_scv.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_var_scv.h:17, from nco_var_scv.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncbo.o ncbo.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncbo.c:57: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/assert.h:35, from nco_var_utl.h:21, from nco_var_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncecat.o ncecat.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncecat.c:45: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncflint.o ncflint.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncflint.c:42: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncecat.c: In function ‘main’: ncecat.c:791:30: warning: ‘%02d’ directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=] 791 | sprintf(grp_out_sfx,"%02d",fl_idx); | ^~~~ ncecat.c:791:29: note: directive argument in the range [0, 2147483647] 791 | sprintf(grp_out_sfx,"%02d",fl_idx); | ^~~~~~ In file included from /usr/include/stdio.h:866, from ncecat.c:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 11 bytes into a destination of size 3 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncks.o ncks.c In file included from /usr/include/assert.h:35, from ncks.c:70: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncks.c: In function ‘main’: ncks.c:649:23: warning: assignment to ‘char’ from ‘void *’ makes integer from pointer without a cast [-Wint-conversion] 649 | *sng_cnv_rcd=NULL; | ^ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncpdq.o ncpdq.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncpdq.c:47: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncra.o ncra.c gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncrename.o ncrename.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncra.c:61: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncrename.c:41: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncwa.o ncwa.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncwa.c:43: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_utl.o ncap_utl.c In file included from /usr/include/assert.h:35, from ncap_utl.c:10: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ test -f ncap_lex.c || /bin/bash ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_lex.o ncap_lex.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from ncap_lex.c:278: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncap_lex.c: In function ‘nco_yylex’: ncap_lex.l:611:34: warning: ‘%s’ directive writing up to 255 bytes into a region of size 147 [-Wformat-overflow=] 611 | (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:866, from ncap_lex.c:278: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 98 or more bytes (assuming 353) into a destination of size 200 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ncap_lex.l:587:36: warning: ‘%s’ directive writing up to 255 bytes into a region of size 147 [-Wformat-overflow=] 587 | (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:866, from ncap_lex.c:278: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 98 or more bytes (assuming 353) into a destination of size 200 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ncap_lex.l:634:34: warning: ‘%s’ directive writing up to 255 bytes into a region of size 164 [-Wformat-overflow=] 634 | (void)sprintf(ncap_err_sng,"#Warning: unable to locate variable %s. So cannot create attribute %s",var_nm,yytext); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:866, from ncap_lex.c:278: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 66 or more bytes (assuming 321) into a destination of size 200 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -release 5.0.7 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o libnco.la -rpath /usr/lib/nco nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_crt.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_flt.lo nco_grp_utl.lo nco_grp_trv.lo nco_kd.lo nco_lmt.lo nco_lst_utl.lo nco_map.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_mta.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ply.lo nco_ply_lst.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_s1d.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_sph.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_crt.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_flt.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_kd.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_map.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_mta.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ply.o .libs/nco_ply_lst.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_s1d.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_sph.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lcurl -lgsl -lgslcblas -ludunits2 -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -Wl,-soname -Wl,libnco-5.0.7.so -o .libs/libnco-5.0.7.so libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-5.0.7.so" "libnco.so") libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncatted ncatted.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncbo ncbo.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncecat ncecat.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncflint ncflint.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncks ncks.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncpdq ncpdq.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncra ncra.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncrename ncrename.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncwa ncwa.o ncap_utl.o ncap_lex.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncecat ncecat.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncflint ncflint.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncra ncra.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncatted ncatted.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncks ncks.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncbo ncbo.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncrename ncrename.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncpdq ncpdq.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=gnu11 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncwa ncwa.o ncap_utl.o ncap_lex.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib/nco make[5]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/src/nco' Making all in nco++ make[5]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Invoke.o Invoke.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncap2.o ncap2.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncap2_utl.o ncap2_utl.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncap2_att.o ncap2_att.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sdo_utl.o sdo_utl.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sym_cls.o sym_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fmc_cls.o fmc_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fmc_all_cls.o fmc_all_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fmc_gsl_cls.o fmc_gsl_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o prs_cls.o prs_cls.cc In file included from fmc_gsl_cls.cc:10: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from ncap2_att.hh:5, from ncap2_utl.hh:60, from ncoGrammar.g:31, from fmc_gsl_cls.hh:43, from fmc_gsl_cls.cc:10: ../../config.h:449: note: this is the location of the previous definition 449 | #define NCO_GSL_VERSION 207 | In file included from nco_gsl.hh:31, from fmc_gsl_cls.cc:11: ../../config.h:449: warning: "NCO_GSL_VERSION" redefined 449 | #define NCO_GSL_VERSION 207 | In file included from fmc_gsl_cls.cc:10: fmc_gsl_cls.hh:49: note: this is the location of the previous definition 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from libnco++.hh:26, from ncap2.cc:80: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from fmc_gsl_cls.hh:12, from libnco++.hh:26, from ncap2.cc:80: ../../config.h:449: note: this is the location of the previous definition 449 | #define NCO_GSL_VERSION 207 | In file included from libnco++.hh:26, from Invoke.cc:13: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from fmc_gsl_cls.hh:12, from libnco++.hh:26, from Invoke.cc:13: ../../config.h:449: note: this is the location of the previous definition 449 | #define NCO_GSL_VERSION 207 | g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o NcapVar.o NcapVar.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o NcapVarVector.o NcapVarVector.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncoLexer.o ncoLexer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncoParser.o ncoParser.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncoTree.o ncoTree.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -c -o nco_gsl.o nco_gsl.cc /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security ../nco/libnco.la -lantlr -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/nco-Em2TK8/nco-5.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o ../nco/.libs/libnco.so -lantlr -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp -Wl,-rpath -Wl,/usr/lib/nco make[5]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/src/nco++' make[5]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/src' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/src' make[4]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/src' Making all in man make[4]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/man' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/man' Making all in doc make[4]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/doc' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/bash '/build/nco-Em2TK8/nco-5.0.7/autobld/missing' makeinfo --version) >/dev/null 2>&1; then \ for f in nco.info nco.info-[0-9] nco.info-[0-9][0-9] nco.i[0-9] nco.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/bash '/build/nco-Em2TK8/nco-5.0.7/autobld/missing' makeinfo -I . \ -o nco.info nco.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./nco.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc make[4]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/doc' make[4]: Entering directory '/build/nco-Em2TK8/nco-5.0.7' make[4]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7' make[3]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7' make[2]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7' cd doc && /usr/bin/make clean && /usr/bin/make html make[2]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/doc' test -z "nco.dvi nco.pdf nco.ps nco.html" \ || rm -rf nco.dvi nco.pdf nco.ps nco.html rm -rf .libs _libs rm -rf nco.t2d nco.t2p rm -f *.lo make[2]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/doc' make[2]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/doc' rm -rf nco.htp if /bin/bash '/build/nco-Em2TK8/nco-5.0.7/autobld/missing' makeinfo --html --ifinfo --no-split -I . \ -o nco.htp nco.texi; \ then \ rm -rf nco.html && mv nco.htp nco.html; \ else \ rm -rf nco.htp; exit 1; \ fi make[2]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/doc' cd doc && /usr/bin/make nco.info && sed -i 's/xmp\/fgr[0-9].png/\/usr\/share\/doc\/nco\/&/' nco.info* make[2]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/doc' make[2]: 'nco.info' is up to date. make[2]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/doc' make[1]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7' debian/rules override_dh_auto_test make[1]: Entering directory '/build/nco-Em2TK8/nco-5.0.7' # currently the check phase badly fails dh_auto_test || echo "Ignoring test failures" make[1]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem autoconf dh_testroot -a -O--buildsystem=autoconf dh_prep -a -O--buildsystem=autoconf debian/rules override_dh_auto_install make[1]: Entering directory '/build/nco-Em2TK8/nco-5.0.7' dh_auto_install make -j1 install DESTDIR=/build/nco-Em2TK8/nco-5.0.7/debian/nco AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/nco-Em2TK8/nco-5.0.7' Making install in data make[3]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/data' make[4]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/data' /bin/mkdir -p '/build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin' /usr/bin/install -c ncclimo ncremap '/build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/data' make[3]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/data' Making install in src make[3]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/src' Making install in nco make[4]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/src/nco' make[5]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/src/nco' /bin/mkdir -p '/build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/lib/nco' /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco.la '/build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/libnco-5.0.7.so /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/lib/nco/libnco-5.0.7.so libtool: install: (cd /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/lib/nco && { ln -s -f libnco-5.0.7.so libnco.so || { rm -f libnco.so && ln -s libnco-5.0.7.so libnco.so; }; }) libtool: install: /usr/bin/install -c .libs/libnco.lai /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/lib/nco/libnco.la libtool: warning: remember to run 'libtool --finish /usr/lib/nco' /bin/mkdir -p '/build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin' /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin' libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncatted /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin/ncatted libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncbo /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin/ncbo libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncecat /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin/ncecat libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncflint /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin/ncflint libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncks /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin/ncks libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncpdq /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin/ncpdq libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncra /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin/ncra libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncrename /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin/ncrename libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncwa /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin/ncwa make install-exec-hook make[6]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/src/nco' cd /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff) cd /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea) cd /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces) cd /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat) make[6]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/src/nco' make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/src/nco' make[4]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/src/nco' Making install in nco++ make[4]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/src/nco++' make[5]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/src/nco++' /bin/mkdir -p '/build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin' /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap2 '/build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin' libtool: warning: '../nco/libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncap2 /build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/bin/ncap2 make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/src/nco++' make[4]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/src/nco++' make[4]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/src' make[5]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/src' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/src' make[4]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/src' make[3]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/src' Making install in man make[3]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/man' make[4]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/man' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/share/man/man1' /usr/bin/install -c -m 644 ncap2.1 ncatted.1 ncbo.1 ncclimo.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncra.1 ncremap.1 ncrename.1 ncpdq.1 ncrcat.1 ncwa.1 '/build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/share/man/man1' make[4]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/man' make[3]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/man' Making install in doc make[3]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/doc' make[4]: Entering directory '/build/nco-Em2TK8/nco-5.0.7/doc' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/share/info' /usr/bin/install -c -m 644 ./nco.info ./nco.info-1 ./nco.info-2 ./nco.info-3 ./nco.info-4 '/build/nco-Em2TK8/nco-5.0.7/debian/nco/usr/share/info' make[4]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/doc' make[3]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7/doc' make[3]: Entering directory '/build/nco-Em2TK8/nco-5.0.7' make[4]: Entering directory '/build/nco-Em2TK8/nco-5.0.7' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7' make[3]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7' make[2]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7' find /build/nco-Em2TK8/nco-5.0.7/debian/nco -name '*.h' -delete find /build/nco-Em2TK8/nco-5.0.7/debian/nco -name '*.hh' -delete rm -f debian/nco/usr/lib/nco/libnco.la rm -f debian/nco/usr/share/info/dir make[1]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7' dh_install -a -O--buildsystem=autoconf dh_installdocs -a -O--buildsystem=autoconf dh_installchangelogs -a -O--buildsystem=autoconf dh_installman -a -O--buildsystem=autoconf dh_installinfo -a -O--buildsystem=autoconf dh_installinit -a -O--buildsystem=autoconf dh_installsystemduser -a -O--buildsystem=autoconf dh_lintian -a -O--buildsystem=autoconf dh_perl -a -O--buildsystem=autoconf dh_link -a -O--buildsystem=autoconf dh_strip_nondeterminism -a -O--buildsystem=autoconf dh_compress -a -O--buildsystem=autoconf dh_fixperms -a -O--buildsystem=autoconf dh_missing -a -O--buildsystem=autoconf dh_dwz -a -O--buildsystem=autoconf dwz: debian/nco/usr/bin/ncap2: DWARF compression not beneficial - old size 7224461 new size 7234936 dh_strip -a -O--buildsystem=autoconf debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/nco-Em2TK8/nco-5.0.7' dh_makeshlibs -Xusr/lib/nco make[1]: Leaving directory '/build/nco-Em2TK8/nco-5.0.7' dh_shlibdeps -a -O--buildsystem=autoconf dpkg-shlibdeps: warning: debian/nco/usr/lib/nco/libnco-5.0.7.so contains an unresolvable reference to symbol nco_mta_dlm_get: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=autoconf dh_gencontrol -a -O--buildsystem=autoconf dh_md5sums -a -O--buildsystem=autoconf dh_builddeb -a -O--buildsystem=autoconf dpkg-deb: building package 'nco' in '../nco_5.0.7-1_amd64.deb'. dpkg-deb: building package 'nco-dbgsym' in '../nco-dbgsym_5.0.7-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../nco_5.0.7-1_amd64.buildinfo dpkg-genchanges --build=any -O../nco_5.0.7-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/nco-Em2TK8 /tmp/nco-5.0.7-1yftll9_m I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_root I: removing tempdir /tmp/mmdebstrap.PyL4VSyl5j... I: success in 652.1964 seconds md5: Value of 'md5' differs for nco-dbgsym_5.0.7-1_amd64.deb md5: Size differs for nco-dbgsym_5.0.7-1_amd64.deb md5: Value of 'md5' differs for nco_5.0.7-1_amd64.deb md5: Size differs for nco_5.0.7-1_amd64.deb sha1: Value of 'sha1' differs for nco-dbgsym_5.0.7-1_amd64.deb sha1: Size differs for nco-dbgsym_5.0.7-1_amd64.deb sha1: Value of 'sha1' differs for nco_5.0.7-1_amd64.deb sha1: Size differs for nco_5.0.7-1_amd64.deb sha256: Value of 'sha256' differs for nco-dbgsym_5.0.7-1_amd64.deb sha256: Size differs for nco-dbgsym_5.0.7-1_amd64.deb sha256: Value of 'sha256' differs for nco_5.0.7-1_amd64.deb sha256: Size differs for nco_5.0.7-1_amd64.deb Checksums: FAIL Cannot generate diffoscope for nco-dbgsym_5.0.7-1_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/c250eb307429aea12fb7ae37a40f6fc2218b57a8f72a49b079a57ba1e1c66151/download Cannot generate diffoscope for nco_5.0.7-1_amd64.deb: RetryError[]