Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/muscle/muscle_3.8.1551-2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/muscle-3.8.1551-2guqenrh_/muscle_3.8.1551-2_amd64.buildinfo Get source package info: muscle=1:3.8.1551-2 Source URL: http://snapshot.notset.fr/mr/package/muscle/1:3.8.1551-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11 automake=1:1.16.1-4 autopoint=0.19.8.1-9 autotools-dev=20180224.1 base-files=10.1 base-passwd=3.5.46 bash=5.0-2 binutils=2.31.1-12 binutils-common=2.31.1-12 binutils-x86-64-linux-gnu=2.31.1-12 bsdmainutils=11.1.2+b1 bsdutils=1:2.33.1-0.1 build-essential=12.5 bzip2=1.0.6-9 coreutils=8.30-1 cpp=4:8.2.0-2 cpp-8=8.2.0-21 dash=0.5.10.2-5 debconf=1.5.70 debhelper=12.1 debianutils=4.8.6.1 dh-autoreconf=19 dh-strip-nondeterminism=1.1.1-1 diffutils=1:3.7-2 dpkg=1.19.4 dpkg-dev=1.19.4 dwz=0.12-3 fdisk=2.33.1-0.1 file=1:5.35-2 findutils=4.6.0+git+20190209-2 g++=4:8.2.0-2 g++-8=8.2.0-21 gcc=4:8.2.0-2 gcc-8=8.2.0-21 gcc-8-base=8.2.0-21 gettext=0.19.8.1-9 gettext-base=0.19.8.1-9 grep=3.3-1 groff-base=1.22.4-2 gzip=1.9-3 hostname=3.21 init-system-helpers=1.56+nmu1 intltool-debian=0.35.0+20060710.5 libacl1=2.2.52-5 libarchive-zip-perl=1.64-1 libasan5=8.2.0-21 libatomic1=8.2.0-21 libattr1=1:2.4.47-4 libaudit-common=1:2.8.4-2 libaudit1=1:2.8.4-2 libbinutils=2.31.1-12 libblkid1=2.33.1-0.1 libbsd0=0.9.1-1 libbz2-1.0=1.0.6-9 libc-bin=2.28-7 libc-dev-bin=2.28-7 libc6=2.28-7 libc6-dev=2.28-7 libcap-ng0=0.7.9-2 libcc1-0=8.2.0-21 libcroco3=0.6.12-3 libdb5.3=5.3.28+dfsg1-0.3 libdebconfclient0=0.247 libdpkg-perl=1.19.4 libelf1=0.176-1 libfdisk1=2.33.1-0.1 libffi6=3.2.1-9 libfile-stripnondeterminism-perl=1.1.1-1 libgcc-8-dev=8.2.0-21 libgcc1=1:8.2.0-21 libgcrypt20=1.8.4-5 libgdbm-compat4=1.18.1-3 libgdbm6=1.18.1-3 libglib2.0-0=2.58.3-1 libgmp10=2:6.1.2+dfsg-4 libgomp1=8.2.0-21 libgpg-error0=1.35-1 libicu63=63.1-6 libisl19=0.20-2 libitm1=8.2.0-21 liblsan0=8.2.0-21 liblz4-1=1.8.3-1 liblzma5=5.2.4-1 libmagic-mgc=1:5.35-2 libmagic1=1:5.35-2 libmount1=2.33.1-0.1 libmpc3=1.1.0-1 libmpfr6=4.0.2-1 libmpx2=8.2.0-21 libncurses6=6.1+20181013-2 libncursesw6=6.1+20181013-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre3=2:8.39-11 libperl5.28=5.28.1-4 libpipeline1=1.5.1-2 libquadmath0=8.2.0-21 libseccomp2=2.3.3-4 libselinux1=2.8-1+b1 libsigsegv2=2.12-2 libsmartcols1=2.33.1-0.1 libstdc++-8-dev=8.2.0-21 libstdc++6=8.2.0-21 libsystemd0=240-6 libtinfo6=6.1+20181013-2 libtool=2.4.6-10 libtsan0=8.2.0-21 libubsan1=8.2.0-21 libuchardet0=0.0.6-3 libudev1=240-6 libunistring2=0.9.10-1 libuuid1=2.33.1-0.1 libxml2=2.9.4+dfsg1-7+b3 linux-libc-dev=4.19.20-1 login=1:4.5-1.1 m4=1.4.18-2 make=4.2.1-1.2 man-db=2.8.5-2 mawk=1.3.3-17+b3 ncurses-base=6.1+20181013-2 ncurses-bin=6.1+20181013-2 patch=2.7.6-3 perl=5.28.1-4 perl-base=5.28.1-4 perl-modules-5.28=5.28.1-4 po-debconf=1.0.21 sed=4.7-1 sensible-utils=0.0.12 sysvinit-utils=2.93-8 tar=1.30+dfsg-5 util-linux=2.33.1-0.1 xz-utils=5.2.4-1 zlib1g=1:1.2.11.dfsg-1 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20190219T152903Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d muscle=1:3.8.1551-2 && mkdir -p /build/muscle-4jPBcw && dpkg-source --no-check -x /*.dsc /build/muscle-4jPBcw/muscle-3.8.1551 && chown -R builduser:builduser /build/muscle-4jPBcw" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/muscle-4jPBcw/muscle-3.8.1551 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1550870003" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/muscle-4jPBcw /tmp/muscle-3.8.1551-2guqenrh_ buster /dev/null deb http://snapshot.notset.fr/archive/debian/20190219T152903Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.Kel5l5YrZb as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.Kel5l5YrZb Reading package lists... Building dependency tree... util-linux is already the newest version (2.33.1-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 373 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20190219T152903Z unstable/main amd64 libfakeroot amd64 1.23-1 [45.9 kB] Get:2 http://snapshot.notset.fr/archive/debian/20190219T152903Z unstable/main amd64 fakeroot amd64 1.23-1 [85.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (815 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4422 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.23-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.23-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.23-1_amd64.deb ... Unpacking fakeroot (1.23-1) ... Setting up libfakeroot:amd64 (1.23-1) ... Setting up fakeroot (1.23-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.28-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20190219T152903Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.Kel5l5YrZb Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20190219T152903Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1117 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.Kel5l5YrZb I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d muscle=1:3.8.1551-2 && mkdir -p /build/muscle-4jPBcw && dpkg-source --no-check -x /*.dsc /build/muscle-4jPBcw/muscle-3.8.1551 && chown -R builduser:builduser /build/muscle-4jPBcw"' exec /tmp/mmdebstrap.Kel5l5YrZb Reading package lists... NOTICE: 'muscle' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/muscle.git Please use: git clone https://salsa.debian.org/med-team/muscle.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 215 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main muscle 1:3.8.1551-2 (dsc) [2027 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main muscle 1:3.8.1551-2 (tar) [190 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main muscle 1:3.8.1551-2 (diff) [23.3 kB] Fetched 215 kB in 0s (778 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'muscle_3.8.1551-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting muscle in /build/muscle-4jPBcw/muscle-3.8.1551 dpkg-source: info: unpacking muscle_3.8.1551.orig.tar.gz dpkg-source: info: unpacking muscle_3.8.1551-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Fix_FTBFS_Hurd.patch dpkg-source: info: applying makefile.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/muscle-4jPBcw/muscle-3.8.1551 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1550870003" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.Kel5l5YrZb dpkg-buildpackage: info: source package muscle dpkg-buildpackage: info: source version 1:3.8.1551-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_auto_clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/muscle-4jPBcw/muscle-3.8.1551' dh_auto_build -- 'GPP=$(CXX)' make -j4 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/build/muscle-4jPBcw/muscle-3.8.1551' g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 aligngivenpath.cpp -o aligngivenpath.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 aligngivenpathsw.cpp -o aligngivenpathsw.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 aligntwomsas.cpp -o aligntwomsas.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 aligntwoprofs.cpp -o aligntwoprofs.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 aln.cpp -o aln.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 alpha.cpp -o alpha.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 anchors.cpp -o anchors.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 bittraceback.cpp -o bittraceback.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 blosum62.cpp -o blosum62.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 blosumla.cpp -o blosumla.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 clust.cpp -o clust.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 cluster.cpp -o cluster.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 clwwt.cpp -o clwwt.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 color.cpp -o color.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 cons.cpp -o cons.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 diaglist.cpp -o diaglist.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 diffobjscore.cpp -o diffobjscore.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 diffpaths.cpp -o diffpaths.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 difftrees.cpp -o difftrees.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 difftreese.cpp -o difftreese.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 distcalc.cpp -o distcalc.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 distfunc.cpp -o distfunc.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 distpwkimura.cpp -o distpwkimura.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 domuscle.cpp -o domuscle.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 dosp.cpp -o dosp.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 dpreglist.cpp -o dpreglist.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 drawtree.cpp -o drawtree.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 edgelist.cpp -o edgelist.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 enumopts.cpp -o enumopts.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 enumtostr.cpp -o enumtostr.o g++ -c -g -O2 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-fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 scorehistory.cpp -o scorehistory.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 scorepp.cpp -o scorepp.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 seq.cpp -o seq.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 seqvect.cpp -o seqvect.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 setblosumweights.cpp -o setblosumweights.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 setgscweights.cpp -o setgscweights.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 setnewhandler.cpp -o setnewhandler.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 spfast.cpp -o spfast.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 sptest.cpp -o sptest.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 stabilize.cpp -o stabilize.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 subfam.cpp -o subfam.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 subfams.cpp -o subfams.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 sw.cpp -o sw.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 termgaps.cpp -o termgaps.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 textfile.cpp -o textfile.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 threewaywt.cpp -o threewaywt.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 tomhydro.cpp -o tomhydro.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 traceback.cpp -o traceback.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 tracebackopt.cpp -o tracebackopt.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 tracebacksw.cpp -o tracebacksw.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 treefrommsa.cpp -o treefrommsa.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 typetostr.cpp -o typetostr.o typetostr.cpp: In function 'const char* SecsToStr(long unsigned int)': typetostr.cpp:13:15: warning: ':' directive writing 1 byte into a region of size between 0 and 14 [-Wformat-overflow=] sprintf(Str, "%02ld:%02ld:%02ld", hh, mm, ss); ^~~~~~~~~~~~~~~~~~~ typetostr.cpp:13:15: note: directive argument in the range [0, 59] typetostr.cpp:13:15: note: directive argument in the range [0, 59] typetostr.cpp:13:9: note: 'sprintf' output between 9 and 23 bytes into a destination of size 16 sprintf(Str, "%02ld:%02ld:%02ld", hh, mm, ss); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 upgma2.cpp -o upgma2.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 usage.cpp -o usage.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 validateids.cpp -o validateids.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 vtml2.cpp -o vtml2.o g++ -c -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 writescorefile.cpp -o writescorefile.o g++ -g -O2 -fdebug-prefix-map=/build/muscle-4jPBcw/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 -o muscle aligngivenpath.o aligngivenpathsw.o aligntwomsas.o aligntwoprofs.o aln.o alpha.o anchors.o bittraceback.o blosum62.o blosumla.o clust.o cluster.o clwwt.o color.o cons.o diaglist.o diffobjscore.o diffpaths.o difftrees.o difftreese.o distcalc.o distfunc.o distpwkimura.o domuscle.o dosp.o dpreglist.o drawtree.o edgelist.o enumopts.o enumtostr.o estring.o fasta.o fasta2.o fastclust.o fastdist.o fastdistjones.o fastdistkbit.o fastdistkmer.o fastdistmafft.o fastdistnuc.o fastscorepath2.o finddiags.o finddiagsn.o glbalign.o glbalign352.o glbaligndiag.o glbalignle.o glbalignsimple.o glbalignsp.o glbalignspn.o glbalignss.o glbalndimer.o globals.o globalslinux.o globalsosx.o globalsother.o globalswin32.o gonnet.o henikoffweight.o henikoffweightpb.o html.o hydro.o intmath.o local.o main.o makerootmsa.o makerootmsab.o maketree.o mhack.o mpam200.o msa.o msa2.o msadistkimura.o msf.o muscle.o muscleout.o nucmx.o nwdasimple.o nwdasimple2.o nwdasmall.o nwrec.o nwsmall.o objscore.o objscore2.o objscoreda.o onexception.o options.o outweights.o pam200mafft.o params.o phy.o phy2.o phy3.o phy4.o phyfromclust.o phyfromfile.o physeq.o phytofile.o posgap.o ppscore.o profdb.o profile.o profilefrommsa.o progalign.o progress.o progressivealign.o pwpath.o readmx.o realigndiffs.o realigndiffse.o refine.o refinehoriz.o refinesubfams.o refinetree.o refinetreee.o refinevert.o refinew.o savebest.o scoredist.o scoregaps.o scorehistory.o scorepp.o seq.o seqvect.o setblosumweights.o setgscweights.o setnewhandler.o spfast.o sptest.o stabilize.o subfam.o subfams.o sw.o termgaps.o textfile.o threewaywt.o tomhydro.o traceback.o tracebackopt.o tracebacksw.o treefrommsa.o typetostr.o upgma2.o usage.o validateids.o vtml2.o writescorefile.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/muscle-4jPBcw/muscle-3.8.1551' make[1]: Leaving directory '/build/muscle-4jPBcw/muscle-3.8.1551' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'muscle-dbgsym' in '../muscle-dbgsym_3.8.1551-2_amd64.deb'. dpkg-deb: building package 'muscle' in '../muscle_3.8.1551-2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../muscle_3.8.1551-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/muscle-4jPBcw /tmp/muscle-3.8.1551-2guqenrh_ I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.Kel5l5YrZb... I: success in 333.1850 seconds md5: muscle-dbgsym_3.8.1551-2_amd64.deb: OK md5: muscle_3.8.1551-2_amd64.deb: OK sha1: muscle-dbgsym_3.8.1551-2_amd64.deb: OK sha1: muscle_3.8.1551-2_amd64.deb: OK sha256: muscle-dbgsym_3.8.1551-2_amd64.deb: OK sha256: muscle_3.8.1551-2_amd64.deb: OK Checksums: OK