Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/mshr/mshr_2019.2.0~git20200924.c27eb18+dfsg1-5_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/mshr-2019.2.0~git20200924.c27eb18+dfsg1-535a76kr5/mshr_2019.2.0~git20200924.c27eb18+dfsg1-5_all.buildinfo Get source package info: mshr=2019.2.0~git20200924.c27eb18+dfsg1-5 Source URL: http://snapshot.notset.fr/mr/package/mshr/2019.2.0~git20200924.c27eb18+dfsg1-5/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-5 bsdutils=1:2.36.1-4 build-essential=12.9 bzip2=1.0.8-4 cmake=3.18.4-1+b1 cmake-data=3.18.4-1 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 cpp-9=9.3.0-20 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.1 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.8.0-1 fonts-mathjax=2.7.9+dfsg-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gcc-9=9.3.0-20 gcc-9-base=9.3.0-20 gettext=0.21-3 gettext-base=0.21-3 gfortran=4:10.2.1-1 gfortran-10=10.2.1-6 gfortran-9=9.3.0-20 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 ibverbs-providers=33.0-1 icu-devtools=67.1-5 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libaec-dev=1.0.4-1 libaec0=1.0.4-1 libamd2=1:5.8.1+dfsg-2 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libarpack2=3.8.0-1 libarpack2-dev=3.8.0-1 libasan5=9.3.0-20 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblas-dev=3.9.0-3 libblas3=3.9.0-3 libblkid1=2.36.1-4 libboost-atomic1.74-dev=1.74.0-7 libboost-atomic1.74.0=1.74.0-7 libboost-chrono-dev=1.74.0.3 libboost-chrono1.74-dev=1.74.0-7 libboost-chrono1.74.0=1.74.0-7 libboost-date-time1.74-dev=1.74.0-7 libboost-date-time1.74.0=1.74.0-7 libboost-dev=1.74.0.3 libboost-filesystem-dev=1.74.0.3 libboost-filesystem1.74-dev=1.74.0-7 libboost-filesystem1.74.0=1.74.0-7 libboost-iostreams-dev=1.74.0.3 libboost-iostreams1.74-dev=1.74.0-7 libboost-iostreams1.74.0=1.74.0-7 libboost-math-dev=1.74.0.3 libboost-math1.74-dev=1.74.0-7 libboost-math1.74.0=1.74.0-7 libboost-mpi-dev=1.74.0.3 libboost-mpi1.74-dev=1.74.0-7 libboost-mpi1.74.0=1.74.0-7 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-7 libboost-program-options1.74.0=1.74.0-7 libboost-regex1.74-dev=1.74.0-7 libboost-regex1.74.0=1.74.0-7 libboost-serialization-dev=1.74.0.3 libboost-serialization1.74-dev=1.74.0-7 libboost-serialization1.74.0=1.74.0-7 libboost-system-dev=1.74.0.3 libboost-system1.74-dev=1.74.0-7 libboost-system1.74.0=1.74.0-7 libboost-thread-dev=1.74.0.3 libboost-thread1.74-dev=1.74.0-7 libboost-thread1.74.0=1.74.0-7 libboost-timer-dev=1.74.0.3 libboost-timer1.74-dev=1.74.0-7 libboost-timer1.74.0=1.74.0-7 libboost1.74-dev=1.74.0-7 libbrotli1=1.0.9-2+b2 libbsd0=0.10.0-1 libbtf1=1:5.8.1+dfsg-2 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcamd2=1:5.8.1+dfsg-2 libcap-ng0=0.7.9-2.2+b1 libcbor0=0.5.0+dfsg-2 libcc1-0=10.2.1-6 libccolamd2=1:5.8.1+dfsg-2 libcgal-dev=5.2-1+b1 libcholmod3=1:5.8.1+dfsg-2 libcolamd2=1:5.8.1+dfsg-2 libcom-err2=1.45.6-1 libcombblas1.16.0=1.6.2-6 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libcurl3-gnutls=7.74.0-1 libcurl4=7.74.0-1 libcurl4-gnutls-dev=7.74.0-1 libcxsparse3=1:5.8.1+dfsg-2 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.256 libdebhelper-perl=13.3.1 libdeflate-dev=1.7-1 libdeflate0=1.7-1 libdolfin-dev=2019.2.0~git20200629.946dbd3+lfs-4 libdolfin-dev-common=2019.2.0~git20200629.946dbd3+lfs-4 libdolfin2019.2=2019.2.0~git20200629.946dbd3+lfs-4 libdolfin64-2019.2=2019.2.0~git20200629.946dbd3+lfs-4 libdolfin64-dev=2019.2.0~git20200629.946dbd3+lfs-4 libdpkg-perl=1.20.7.1 libedit2=3.1-20191231-2+b1 libeigen3-dev=3.3.9-1 libelf1=0.182-3 libevent-2.1-7=2.1.12-stable-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-dev=2.1.12-stable-1 libevent-extra-2.1-7=2.1.12-stable-1 libevent-openssl-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libfabric1=1.11.0-2 libffi7=3.3-5 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-mpi-dev=3.3.8-2 libfftw3-mpi3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfido2-1=1.5.0-2 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.1-6 libgcc-9-dev=9.3.0-20 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran-10-dev=10.2.1-6 libgfortran-9-dev=9.3.0-20 libgfortran5=10.2.1-6 libglib2.0-0=2.66.4-1 libgmp-dev=2:6.2.1+dfsg-1 libgmp10=2:6.2.1+dfsg-1 libgmpxx4ldbl=2:6.2.1+dfsg-1 libgnutls30=3.7.0-5 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgraphblas3=1:5.8.1+dfsg-2 libgssapi-krb5-2=1.18.3-4 libhdf5-mpi-dev=1.10.6+repack-2 libhdf5-openmpi-103-1=1.10.6+repack-2 libhdf5-openmpi-cpp-103-1=1.10.6+repack-2 libhdf5-openmpi-dev=1.10.6+repack-2 libhdf5-openmpi-fortran-102=1.10.6+repack-2 libhdf5-openmpi-hl-100=1.10.6+repack-2 libhdf5-openmpi-hl-cpp-100=1.10.6+repack-2 libhdf5-openmpi-hl-fortran-100=1.10.6+repack-2 libhogweed6=3.6-2 libhwloc-dev=2.4.0+dfsg-3 libhwloc-plugins=2.4.0+dfsg-3 libhwloc15=2.4.0+dfsg-3 libhypre=2.18.2-1 libhypre-dev=2.18.2-1 libibverbs-dev=33.0-1 libibverbs1=33.0-1 libicu-dev=67.1-5 libicu67=67.1-5 libidn2-0=2.3.0-4 libisl23=0.23-1 libitm1=10.2.1-6 libjbig-dev=2.1-3.1+b2 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.0.5-2 libjpeg62-turbo=1:2.0.5-2 libjpeg62-turbo-dev=1:2.0.5-2 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui=1.12.1+dfsg-8 libjs-mathjax=2.7.9+dfsg-1 libjs-sphinxdoc=3.4.3-1 libjs-underscore=1.9.1~dfsg-1 libjsoncpp24=1.9.4-4 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libklu1=1:5.8.1+dfsg-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack-dev=3.9.0-3 liblapack3=3.9.0-3 libldap-2.4-2=2.4.56+dfsg-1 libldl2=1:5.8.1+dfsg-2 liblsan0=10.2.1-6 libltdl-dev=2.4.6-15 libltdl7=2.4.6-15 liblz4-1=1.9.3-1 liblzma-dev=5.2.5-1.0 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmetis5=5.1.0.dfsg-7 libmongoose2=1:5.8.1+dfsg-2 libmount1=2.36.1-4 libmpc3=1.2.0-1 libmpfr-dev=4.1.0-3 libmpfr6=4.1.0-3 libmumps-5.3=5.3.5-1 libmumps-64pord-5.3=5.3.5-1 libmumps-dev=5.3.5-1 libmumps-headers-dev=5.3.5-1 libmumps64-dev=5.3.5-1 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnl-3-200=3.4.0-1+b1 libnl-3-dev=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnl-route-3-dev=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma-dev=2.0.12-1+b1 libnuma1=2.0.12-1+b1 libopenmpi-dev=4.1.0-5 libopenmpi3=4.1.0-5 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libparpack2=3.8.0-1 libparpack2-dev=3.8.0-1 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpetsc-real3.14=3.14.2+dfsg1-1 libpetsc-real3.14-dev=3.14.2+dfsg1-1 libpetsc3.14-dev-common=3.14.2+dfsg1-1 libpetsc64-real3.14=3.14.2+dfsg1-1 libpetsc64-real3.14-dev=3.14.2+dfsg1-1 libpipeline1=1.5.3-1 libpmix-dev=4.0.0-3 libpmix2=4.0.0-3 libprocps8=2:3.3.16-5 libproj-dev=7.2.1-1 libproj19=7.2.1-1 libpsl5=0.21.0-1.1 libpsm-infinipath1=3.3+20.604758e7-6.1 libpsm2-2=11.2.185-1 libptscotch-6.1=6.1.0-2 libptscotch-dev=6.1.0-2 libpython3-all-dev=3.9.1-1 libpython3-dev=3.9.1-1 libpython3-stdlib=3.9.1-1 libpython3.9=3.9.1-2 libpython3.9-dev=3.9.1-2 libpython3.9-minimal=3.9.1-2 libpython3.9-stdlib=3.9.1-2 libquadmath0=10.2.1-6 librbio2=1:5.8.1+dfsg-2 librdmacm1=33.0-1 libreadline8=8.1-1 librhash0=1.4.1-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libscalapack-mpi-dev=2.1.0-4 libscalapack-openmpi-dev=2.1.0-4 libscalapack-openmpi2.1=2.1.0-4 libscotch-6.1=6.1.0-2 libscotch-dev=6.1.0-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsepol1=3.1-1 libsigsegv2=2.12-3 libslepc-real3.14=3.14.1+dfsg1-1 libslepc-real3.14-dev=3.14.1+dfsg1-1 libslepc64-real3.14=3.14.1+dfsg1-1 libslepc64-real3.14-dev=3.14.1+dfsg1-1 libsliplu1=1:5.8.1+dfsg-2 libsmartcols1=2.36.1-4 libspqr2=1:5.8.1+dfsg-2 libsqlite3-0=3.34.0-1 libsqlite3-dev=3.34.0-1 libssh2-1=1.9.0-2 libssl-dev=1.1.1i-1 libssl1.1=1.1.1i-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsuitesparse-dev=1:5.8.1+dfsg-2 libsuitesparseconfig5=1:5.8.1+dfsg-2 libsuperlu-dev=5.2.2+dfsg1-2 libsuperlu-dist-dev=6.2.0+dfsg1-3 libsuperlu-dist6=6.2.0+dfsg1-3 libsuperlu5=5.2.2+dfsg1-2 libsystemd0=247.2-4 libsz2=1.0.4-1 libtasn1-6=4.16.0-2 libtet1.5=1.5.0-5 libtet1.5-dev=1.5.0-5 libtiff-dev=4.2.0-1 libtiff5=4.2.0-1 libtiffxx5=4.2.0-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libucx0=1.10.0~rc1-2 libudev1=247.2-4 libumfpack5=1:5.8.1+dfsg-2 libunistring2=0.9.10-4 libuuid1=2.36.1-4 libuv1=1.40.0-1 libwebp6=0.6.1-2+b1 libx11-6=2:1.7.0-2 libx11-data=2:1.7.0-2 libxau6=1:1.0.8-1+b2 libxcb1=1.14-2.1 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1.1 libxml2=2.9.10+dfsg-6.3+b1 libxml2-dev=2.9.10+dfsg-6.3+b1 libxnvctrl0=460.32.03-1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.5-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=3.0.0 mime-support=3.66 mpi-default-bin=1.13 mpi-default-dev=1.13 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 ocl-icd-libopencl1=2.2.14-2 ocl-icd-opencl-dev=2.2.14-2 opencl-c-headers=3.0~2020.12.18-1 opencl-clhpp-headers=3.0~2.0.13-1 openmpi-bin=4.1.0-5 openmpi-common=4.1.0-5 openssh-client=1:8.4p1-3 passwd=1:4.8.1-1 patch=2.7.6-7 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 procps=2:3.3.16-5 proj-data=7.2.1-1 pybind11-dev=2.6.1-1 python-petsc4py-doc=3.14.0-3 python3=3.9.1-1 python3-all=3.9.1-1 python3-all-dev=3.9.1-1 python3-dev=3.9.1-1 python3-dijitso=2019.2.0~git20190418.c92dcb0-2 python3-distutils=3.9.1-2 python3-ffc=2019.2.0~git20200123.6b621eb-4 python3-fiat=2019.2.0~git20200919.42ceef3-1 python3-lib2to3=3.9.1-2 python3-minimal=3.9.1-1 python3-mpi4py=3.0.3-7+b1 python3-mpmath=1.1.0-2 python3-numpy=1:1.19.4-1+b1 python3-petsc4py=3.14.0-3 python3-petsc4py-64-real=3.14.0-3 python3-petsc4py-64-real3.14=3.14.0-3 python3-petsc4py-real=3.14.0-3 python3-petsc4py-real3.14=3.14.0-3 python3-pkg-resources=51.1.0-1 python3-pybind11=2.6.1-1 python3-setuptools=51.1.0-1 python3-slepc4py=3.14.0-2 python3-slepc4py-64-real=3.14.0-2 python3-slepc4py-64-real3.14=3.14.0-2+b1 python3-slepc4py-real=3.14.0-2 python3-slepc4py-real3.14=3.14.0-2+b1 python3-sympy=1.6.2-3 python3-ufl=2019.2.0~git20200928.057c5f6-1 python3.9=3.9.1-2 python3.9-dev=3.9.1-2 python3.9-minimal=3.9.1-2 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 sphinx-common=3.4.3-1 swig=4.0.2-1 swig4.0=4.0.2-1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020f-1 util-linux=2.36.1-4 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210117T204310Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210111T210416Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d mshr=2019.2.0~git20200924.c27eb18+dfsg1-5 && mkdir -p /build/mshr-7kpuB5 && dpkg-source --no-check -x /*.dsc /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1 && chown -R builduser:builduser /build/mshr-7kpuB5" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1610495753" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/mshr-7kpuB5 /tmp/mshr-2019.2.0~git20200924.c27eb18+dfsg1-535a76kr5 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210111T210416Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.A86Lkq93m6 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.A86Lkq93m6 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210111T210416Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210111T210416Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (585 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4661 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210117T204310Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210111T210416Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.A86Lkq93m6 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210117T204310Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210111T210416Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210117T204310Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210117T204310Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210117T204310Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210117T204310Z unstable/main amd64 Packages [11.6 MB] Fetched 34.4 MB in 28s (1216 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.A86Lkq93m6 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d mshr=2019.2.0~git20200924.c27eb18+dfsg1-5 && mkdir -p /build/mshr-7kpuB5 && dpkg-source --no-check -x /*.dsc /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1 && chown -R builduser:builduser /build/mshr-7kpuB5"' exec /tmp/mmdebstrap.A86Lkq93m6 Reading package lists... NOTICE: 'mshr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/fenics/mshr.git Please use: git clone https://salsa.debian.org/science-team/fenics/mshr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 139 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main mshr 2019.2.0~git20200924.c27eb18+dfsg1-5 (dsc) [3073 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main mshr 2019.2.0~git20200924.c27eb18+dfsg1-5 (tar) [122 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main mshr 2019.2.0~git20200924.c27eb18+dfsg1-5 (diff) [13.2 kB] Fetched 139 kB in 0s (788 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'mshr_2019.2.0~git20200924.c27eb18+dfsg1-5.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting mshr in /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1 dpkg-source: info: unpacking mshr_2019.2.0~git20200924.c27eb18+dfsg1.orig.tar.bz2 dpkg-source: info: unpacking mshr_2019.2.0~git20200924.c27eb18+dfsg1-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_controls.diff dpkg-source: info: applying fix_mesh3_internal.patch dpkg-source: info: applying enable_CGAL5_CXX14.patch dpkg-source: info: applying build_CGAL5.patch dpkg-source: info: applying lib_rename.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1610495753" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.A86Lkq93m6 dpkg-buildpackage: info: source package mshr dpkg-buildpackage: info: source version 2019.2.0~git20200924.c27eb18+dfsg1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . fakeroot debian/rules clean py3versions: no X-Python3-Version in control file, using supported versions dh clean --buildsystem=cmake \ --with python3 \ --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_clean rm -rf python/build* rm -rf python/mshr.egg-info rm -rf debian/tmp64 rm -rf obj-x86_64-linux-gnu obj-x86_64-linux-gnu-64 make[1]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1' dh_autoreconf_clean -O--buildsystem=cmake -O--no-parallel dh_clean -O--buildsystem=cmake -O--no-parallel debian/rules build-indep py3versions: no X-Python3-Version in control file, using supported versions dh build-indep --buildsystem=cmake \ --with python3 \ --no-parallel dh_update_autotools_config -i -O--buildsystem=cmake -O--no-parallel dh_autoreconf -i -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security" /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/ cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D "CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security" /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18\+dfsg1/ .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Using header-only CGAL -- Targetting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.48") -- Boost include dirs: /usr/include -- Boost libraries: -- Using gcc version 4 or later. Adding -frounding-math CMake Warning (dev) at /usr/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:273 (message): The package name passed to `find_package_handle_standard_args` (TETGEN) does not match the name of the calling package (TetGen). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) CMakeLists.txt:32 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:59 (find_package) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:59 (find_package) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:59 (find_package) -- Found Boost: /usr/include (found version "1.74.0") found components: system filesystem program_options -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.3.9", minimum required is "3.1.0") CMake Warning (dev) at CMakeLists.txt:83 (option): Policy CMP0077 is not set: option() honors normal variables. Run "cmake --help-policy CMP0077" for policy details. Use the cmake_policy command to set the policy and suppress this warning. For compatibility with older versions of CMake, option is clearing the normal variable 'CGAL_HEADER_ONLY'. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) /usr/share/dolfin/cmake/UseDOLFIN.cmake:34 (find_package) CMakeLists.txt:95 (include) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) /usr/share/dolfin/cmake/UseDOLFIN.cmake:34 (find_package) CMakeLists.txt:95 (include) -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;SLEPc' -- Testing disabled -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu PETSC_DIR=/usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu-64 -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security" /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/ -DLIB_NAME_EXT="64" -DDOLFIN_LIB_NAME_EXT="64" cd obj-x86_64-linux-gnu-64 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D "CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security" /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18\+dfsg1/ -DLIB_NAME_EXT=64 -DDOLFIN_LIB_NAME_EXT=64 .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Using header-only CGAL -- Targetting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.48") -- Boost include dirs: /usr/include -- Boost libraries: -- Using gcc version 4 or later. Adding -frounding-math CMake Warning (dev) at /usr/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:273 (message): The package name passed to `find_package_handle_standard_args` (TETGEN) does not match the name of the calling package (TetGen). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) CMakeLists.txt:32 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:59 (find_package) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:59 (find_package) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:59 (find_package) -- Found Boost: /usr/include (found version "1.74.0") found components: system filesystem program_options -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.3.9", minimum required is "3.1.0") CMake Warning (dev) at CMakeLists.txt:83 (option): Policy CMP0077 is not set: option() honors normal variables. Run "cmake --help-policy CMP0077" for policy details. Use the cmake_policy command to set the policy and suppress this warning. For compatibility with older versions of CMake, option is clearing the normal variable 'CGAL_HEADER_ONLY'. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) /usr/share/dolfin/cmake/UseDOLFIN.cmake:34 (find_package) CMakeLists.txt:95 (include) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) /usr/share/dolfin/cmake/UseDOLFIN.cmake:34 (find_package) CMakeLists.txt:95 (include) -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;SLEPc' -- Testing disabled -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu-64 make[1]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real dh_auto_build --builddir=obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1 -B/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu/CMakeFiles /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/depend make[4]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu' cd /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1 /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1 /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/mshr.dir/DependInfo.cmake --color= Dependee "/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/mshr.dir/DependInfo.cmake" is newer than depender "/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/mshr.dir/depend.internal". Dependee "/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/mshr.dir/depend.internal". Scanning dependencies of target mshr make[4]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/build make[4]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu' [ 4%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/ASCFileReader.cpp [ 9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALDomain2D.cpp [ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALDomain3D.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/CGAL/Object.h:32, from /usr/include/CGAL/kernel_basic.h:25, from /usr/include/CGAL/basic.h:35, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/meshclean.h:22, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALDomain3D.cpp:31: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/function_output_iterator.hpp:14:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 14 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALDomain3D.cpp:33: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedron_utils.h: In static member function ‘static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)’: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedron_utils.h:855:39: warning: ‘No_intersection_tag’ is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedron_utils.h:32, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALDomain3D.cpp:33: /usr/include/CGAL/Constrained_triangulation_2.h:48:24: note: declared here 48 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALMeshGenerator2D.cpp [ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALMeshGenerator3D.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/CGAL/Object.h:32, from /usr/include/CGAL/kernel_basic.h:25, from /usr/include/CGAL/basic.h:35, from /usr/include/CGAL/Cartesian/Cartesian_base.h:20, from /usr/include/CGAL/Simple_cartesian.h:20, from /usr/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:20, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALMeshGenerator3D.cpp:38: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/function_output_iterator.hpp:14:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 14 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedron_utils.h: In static member function ‘static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)’: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedron_utils.h:855:39: warning: ‘No_intersection_tag’ is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedron_utils.h:32, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42: /usr/include/CGAL/Constrained_triangulation_2.h:48:24: note: declared here 48 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGGeometries3D.cpp [ 31%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGGeometry.cpp [ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem 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/usr/include/CGAL/Simple_cartesian.h:20, from /usr/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:20, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/SurfaceReconstruction.cpp:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/function_output_iterator.hpp:14:1: note: ‘#pragma message: This header is deprecated. 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Scanning dependencies of target mshr make[4]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu-64' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/build make[4]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu-64' [ 4%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/ASCFileReader.cpp [ 9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALDomain2D.cpp [ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALDomain3D.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/CGAL/Object.h:32, from /usr/include/CGAL/kernel_basic.h:25, from /usr/include/CGAL/basic.h:35, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/meshclean.h:22, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALDomain3D.cpp:31: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/function_output_iterator.hpp:14:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 14 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALDomain3D.cpp:33: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedron_utils.h: In static member function ‘static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)’: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedron_utils.h:855:39: warning: ‘No_intersection_tag’ is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedron_utils.h:32, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALDomain3D.cpp:33: /usr/include/CGAL/Constrained_triangulation_2.h:48:24: note: declared here 48 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALMeshGenerator2D.cpp [ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALMeshGenerator3D.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/CGAL/Object.h:32, from /usr/include/CGAL/kernel_basic.h:25, from /usr/include/CGAL/basic.h:35, from /usr/include/CGAL/Cartesian/Cartesian_base.h:20, from /usr/include/CGAL/Simple_cartesian.h:20, from /usr/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:20, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALMeshGenerator3D.cpp:38: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/function_output_iterator.hpp:14:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 14 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedron_utils.h: In static member function ‘static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)’: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedron_utils.h:855:39: warning: ‘No_intersection_tag’ is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedron_utils.h:32, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42: /usr/include/CGAL/Constrained_triangulation_2.h:48:24: note: declared here 48 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGGeometry.cpp [ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem 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-I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGPrimitives2D.cpp [ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/CSGPrimitives3D.cpp [ 50%] Building CXX object CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY 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-ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/OFFFileReader.cpp [ 72%] Building CXX object CMakeFiles/mshr.dir/src/STLFileReader.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real/include -isystem 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/SurfaceReconstruction.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/CGAL/Object.h:32, from /usr/include/CGAL/kernel_basic.h:25, from /usr/include/CGAL/basic.h:35, from /usr/include/CGAL/Cartesian/Cartesian_base.h:20, from /usr/include/CGAL/Simple_cartesian.h:20, from /usr/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:20, from /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/src/SurfaceReconstruction.cpp:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. 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-isystem /usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -std=c++14 -o CMakeFiles/mshrable.dir/app/mshrable.cpp.o -c /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/app/mshrable.cpp [100%] Linking CXX executable mshrable /usr/bin/cmake -E cmake_link_script CMakeFiles/mshrable.dir/link.txt --verbose=1 /usr/bin/c++ -fpermissive -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/mshrable.dir/app/mshrable.cpp.o -o mshrable libmshr64.so.2019.2.0.dev0 /usr/lib/x86_64-linux-gnu/libdolfin64.so.2019.2.0.dev0 /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real/lib/libslepc64_real.so /usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real/lib/libpetsc64_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so make[4]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu-64' [100%] Built target mshrable make[3]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu-64' /usr/bin/cmake -E cmake_progress_start /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu-64/CMakeFiles 0 make[2]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu-64' make[1]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1' dh_auto_test -i -O--buildsystem=cmake -O--no-parallel create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep py3versions: no X-Python3-Version in control file, using supported versions dh binary-indep --buildsystem=cmake \ --with python3 \ --no-parallel dh_testroot -i -O--buildsystem=cmake -O--no-parallel dh_prep -i -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_install --builddir=obj-x86_64-linux-gnu --destdir=debian/tmp cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1 -B/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so.2019.2.0.dev0 -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so.2019.2 -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/bin/mshrable -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/OFFFileReader.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator2D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/CSGGeometries3D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/DolfinMeshUtils.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives3D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/CSGOperators.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/STLFileReader.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/CSGGeometry.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitive.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain3D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain2D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/GlobalInitializer.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/SurfaceConsistency.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator3D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/ASCFileReader.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/MeshGenerator.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/SurfaceReconstruction.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/Meshes.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake make[2]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu' dh_auto_install --builddir=obj-x86_64-linux-gnu-64 --destdir=debian/tmp64 cd obj-x86_64-linux-gnu-64 && make -j1 install DESTDIR=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18\+dfsg1/debian/tmp64 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu-64' /usr/bin/cmake -S/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1 -B/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu-64 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu-64' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu-64' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so.2019.2.0.dev0 -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so.2019.2 -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/bin/mshrable -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/OFFFileReader.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator2D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometries3D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/DolfinMeshUtils.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives3D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/CSGOperators.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/STLFileReader.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometry.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitive.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain3D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain2D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/GlobalInitializer.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/SurfaceConsistency.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator3D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/ASCFileReader.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/MeshGenerator.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/SurfaceReconstruction.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/Meshes.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake -- Installing: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake make[2]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/obj-x86_64-linux-gnu-64' set -e; \ for v in python3.9; do \ cd python; \ PETSC_DIR=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real \ CMAKE_PREFIX_PATH=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr \ $v setup.py build --build-base=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build-$v install --root=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp --install-layout=deb; \ PETSC_DIR=/usr/lib/petscdir/petsc64-3.14/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.14/x86_64-linux-gnu-real \ CMAKE_PREFIX_PATH=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr MSHR_LIB_NAME_EXT="64" DOLFIN_LIB_NAME_EXT="64" \ $v setup.py build --build-base=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64-$v install --root=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64 --install-layout=deb; \ cd ..; \ done -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PythonInterp: /usr/bin/python3.9 (found version "3.9.1") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.9.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.6.1" ) -- Found mshr: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so -- Configuring done -- Generating done -- Build files have been written to: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build running build running build_py creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build-python3.9 creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build-python3.9/lib.linux-x86_64-3.9 creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build-python3.9/lib.linux-x86_64-3.9/mshr copying mshr/__init__.py -> /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build-python3.9/lib.linux-x86_64-3.9/mshr running build_ext building 'mshr.cpp' extension creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build-python3.9/temp.linux-x86_64-3.9 creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build-python3.9/temp.linux-x86_64-3.9/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/include -I/usr/include/python3.9 -c src/mshr.cpp -o /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build-python3.9/temp.linux-x86_64-3.9/src/mshr.o -std=c++14 x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build-python3.9/temp.linux-x86_64-3.9/src/mshr.o -L/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu -lmshr -o /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build-python3.9/lib.linux-x86_64-3.9/mshr/cpp.cpython-39-x86_64-linux-gnu.so running install running install_lib creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/python3 creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/python3/dist-packages creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr copying /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build-python3.9/lib.linux-x86_64-3.9/mshr/__init__.py -> /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr copying /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build-python3.9/lib.linux-x86_64-3.9/mshr/cpp.cpython-39-x86_64-linux-gnu.so -> /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr byte-compiling /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-39.pyc running install_egg_info running egg_info creating mshr.egg-info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt writing manifest file 'mshr.egg-info/SOURCES.txt' reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' Copying mshr.egg-info to /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PythonInterp: /usr/bin/python3.9 (found version "3.9.1") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.9.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.6.1" ) -- Found mshr: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so -- Configuring done -- Generating done -- Build files have been written to: /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64 running build running build_py creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64-python3.9 creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64-python3.9/lib.linux-x86_64-3.9 creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64-python3.9/lib.linux-x86_64-3.9/mshr copying mshr/__init__.py -> /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64-python3.9/lib.linux-x86_64-3.9/mshr running build_ext building 'mshr.cpp' extension creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64-python3.9/temp.linux-x86_64-3.9 creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64-python3.9/temp.linux-x86_64-3.9/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/include -I/usr/include/python3.9 -c src/mshr.cpp -o /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64-python3.9/temp.linux-x86_64-3.9/src/mshr.o -std=c++14 x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64-python3.9/temp.linux-x86_64-3.9/src/mshr.o -L/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu -lmshr64 -o /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64-python3.9/lib.linux-x86_64-3.9/mshr/cpp.cpython-39-x86_64-linux-gnu.so running install running install_lib creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/python3 creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/python3/dist-packages creating /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr copying /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64-python3.9/lib.linux-x86_64-3.9/mshr/__init__.py -> /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr copying /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/python/build64-python3.9/lib.linux-x86_64-3.9/mshr/cpp.cpython-39-x86_64-linux-gnu.so -> /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr byte-compiling /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-39.pyc running install_egg_info running egg_info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' Copying mshr.egg-info to /build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 make[1]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1' dh_install -i -O--buildsystem=cmake -O--no-parallel dh_installdocs -i -O--buildsystem=cmake -O--no-parallel dh_installchangelogs -i -O--buildsystem=cmake -O--no-parallel dh_installexamples -i -O--buildsystem=cmake -O--no-parallel dh_installman -i -O--buildsystem=cmake -O--no-parallel dh_python3 -i -O--buildsystem=cmake -O--no-parallel dh_installsystemduser -i -O--buildsystem=cmake -O--no-parallel dh_perl -i -O--buildsystem=cmake -O--no-parallel dh_link -i -O--buildsystem=cmake -O--no-parallel dh_strip_nondeterminism -i -O--buildsystem=cmake -O--no-parallel dh_compress -i -O--buildsystem=cmake -O--no-parallel dh_fixperms -i -O--buildsystem=cmake -O--no-parallel dh_missing -i -O--buildsystem=cmake -O--no-parallel dh_installdeb -i -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_gencontrol make[1]: Entering directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_gencontrol -- -Vfenics:Upstream-Version=2019.2 \ -Vpybind11:Upstream-Version=2.6 -Vpybind11:Next-Upstream-Version=3 make[1]: Leaving directory '/build/mshr-7kpuB5/mshr-2019.2.0-git20200924.c27eb18+dfsg1' dh_md5sums -i -O--buildsystem=cmake -O--no-parallel dh_builddeb -i -O--buildsystem=cmake -O--no-parallel dpkg-deb: building package 'python3-mshr' in '../python3-mshr_2019.2.0~git20200924.c27eb18+dfsg1-5_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../mshr_2019.2.0~git20200924.c27eb18+dfsg1-5_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/mshr-7kpuB5 /tmp/mshr-2019.2.0~git20200924.c27eb18+dfsg1-535a76kr5 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.A86Lkq93m6... I: success in 3262.8870 seconds md5: python3-mshr_2019.2.0~git20200924.c27eb18+dfsg1-5_all.deb: OK sha1: python3-mshr_2019.2.0~git20200924.c27eb18+dfsg1-5_all.deb: OK sha256: python3-mshr_2019.2.0~git20200924.c27eb18+dfsg1-5_all.deb: OK Checksums: OK