Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/mrtrix3/mrtrix3_3.0~rc3+git135-g2b8e7d0c2-5_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/mrtrix3-3.0~rc3+git135-g2b8e7d0c2-5qaeubwkw/mrtrix3_3.0~rc3+git135-g2b8e7d0c2-5_all.buildinfo Get source package info: mrtrix3=3.0~rc3+git135-g2b8e7d0c2-5 Source URL: http://snapshot.notset.fr/mr/package/mrtrix3/3.0~rc3+git135-g2b8e7d0c2-5/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adwaita-icon-theme=3.34.0-2 autoconf=2.69-11.1 automake=1:1.16.1-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-6 bc=1.07.1-2+b2 binutils=2.34-4 binutils-common=2.34-4 binutils-x86-64-linux-gnu=2.34-4 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.8 bzip2=1.0.8-2 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.2.1-31 dash=0.5.10.2-6 debconf=1.5.73 debhelper=12.9 debianutils=4.9.1 dh-autoreconf=19 dh-python=4.20191017 dh-strip-nondeterminism=1.6.3-2 diffutils=1:3.7-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-5 fdisk=2.34-0.1 file=1:5.38-4 findutils=4.7.0-1 fontconfig=2.13.1-2+b1 fontconfig-config=2.13.1-2 fonts-dejavu-core=2.37-1 g++=4:9.2.1-3.1 g++-9=9.2.1-31 gcc=4:9.2.1-3.1 gcc-10-base=10-20200304-1 gcc-9=9.2.1-31 gcc-9-base=9.2.1-31 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gfortran=4:9.2.1-3.1 gfortran-9=9.2.1-31 gir1.2-atk-1.0=2.34.1-1 gir1.2-freedesktop=1.62.0-5+b1 gir1.2-gdkpixbuf-2.0=2.40.0+dfsg-3 gir1.2-glib-2.0=1.62.0-5+b1 gir1.2-gtk-2.0=2.24.32-4 gir1.2-harfbuzz-0.0=2.6.4-1 gir1.2-pango-1.0=1.42.4-8 grep=3.4-1 groff-base=1.22.4-4 gtk-update-icon-cache=3.24.14-1 gzip=1.10-1 hdf5-helpers=1.10.4+repack-11 hicolor-icon-theme=0.17-2 hostname=3.23 icu-devtools=63.2-2 imagemagick=8:6.9.10.23+dfsg-2.1+b2 imagemagick-6-common=8:6.9.10.23+dfsg-2.1 imagemagick-6.q16=8:6.9.10.23+dfsg-2.1+b2 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-6 libaec-dev=1.0.4-1 libaec0=1.0.4-1 libamd2=1:5.7.1+dfsg-2 libarchive-zip-perl=1.67-2 libarpack2=3.7.0-3 libasan5=9.2.1-31 libasound2=1.2.2-2.1 libasound2-data=1.2.2-2.1 libatk1.0-0=2.34.1-1 libatk1.0-data=2.34.1-1 libatk1.0-dev=2.34.1-1 libatkmm-1.6-1v5=2.28.0-2 libatkmm-1.6-dev=2.28.0-2 libatomic1=10-20200304-1 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-2 libaudit1=1:2.8.5-2+b1 libavahi-client3=0.7-5 libavahi-common-data=0.7-5 libavahi-common3=0.7-5 libbinutils=2.34-4 libblas-dev=3.9.0-1 libblas3=3.9.0-1 libblkid-dev=2.34-0.1 libblkid1=2.34-0.1 libbrotli1=1.0.7-6 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libc-bin=2.29-10 libc-dev-bin=2.29-10 libc6=2.29-10 libc6-dev=2.29-10 libcairo-gobject2=1.16.0-4 libcairo-script-interpreter2=1.16.0-4 libcairo2=1.16.0-4 libcairo2-dev=1.16.0-4 libcairomm-1.0-1v5=1.12.2-4 libcairomm-1.0-dev=1.12.2-4 libcamd2=1:5.7.1+dfsg-2 libcap-ng0=0.7.9-2.1+b2 libcc1-0=10-20200304-1 libccolamd2=1:5.7.1+dfsg-2 libcholmod3=1:5.7.1+dfsg-2 libcolamd2=1:5.7.1+dfsg-2 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libfontconfig1=2.13.1-2+b1 libfontconfig1-dev=2.13.1-2+b1 libfreetype-dev=2.10.1-2 libfreetype6=2.10.1-2 libfreetype6-dev=2.10.1-2 libfribidi-dev=1.0.8-2 libfribidi0=1.0.8-2 libgbm1=19.3.3-1 libgcc-9-dev=9.2.1-31 libgcc-s1=10-20200304-1 libgcc1=1:10-20200304-1 libgcrypt20=1.8.5-5 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgdk-pixbuf2.0-0=2.40.0+dfsg-3 libgdk-pixbuf2.0-bin=2.40.0+dfsg-3 libgdk-pixbuf2.0-common=2.40.0+dfsg-3 libgdk-pixbuf2.0-dev=2.40.0+dfsg-3 libgfortran-9-dev=9.2.1-31 libgfortran5=10-20200304-1 libgirepository-1.0-1=1.62.0-5+b1 libgl-dev=1.3.1-1 libgl1=1.3.1-1 libgl1-mesa-dev=19.3.3-1 libgl1-mesa-dri=19.3.3-1 libgl2ps1.4=1.4.0+dfsg1-3 libglapi-mesa=19.3.3-1 libgles-dev=1.3.1-1 libgles1=1.3.1-1 libgles2=1.3.1-1 libglib2.0-0=2.64.0-2 libglib2.0-bin=2.64.0-2 libglib2.0-data=2.64.0-2 libglib2.0-dev=2.64.0-2 libglib2.0-dev-bin=2.64.0-2 libglibmm-2.4-1v5=2.62.0-1 libglibmm-2.4-dev=2.62.0-1 libglpk40=4.65-2 libglu1-mesa=9.0.1-1 libglu1-mesa-dev=9.0.1-1 libglvnd-dev=1.3.1-1 libglvnd0=1.3.1-1 libglx-dev=1.3.1-1 libglx-mesa0=19.3.3-1 libglx0=1.3.1-1 libgmp10=2:6.2.0+dfsg-4 libgnutls30=3.6.12-2 libgomp1=10-20200304-1 libgpg-error0=1.37-1 libgraphicsmagick++-q16-12=1.4+really1.3.35-1 libgraphicsmagick-q16-3=1.4+really1.3.35-1 libgraphite2-3=1.3.13-11 libgraphite2-dev=1.3.13-11 libgsl-dev=2.5+dfsg-6+b1 libgsl23=2.5+dfsg-6+b1 libgslcblas0=2.5+dfsg-6+b1 libgssapi-krb5-2=1.17-6 libgtk2.0-0=2.24.32-4 libgtk2.0-common=2.24.32-4 libgtk2.0-dev=2.24.32-4 libgtkglext1=1.2.0-9 libgtkglext1-dev=1.2.0-9 libgtkmm-2.4-1v5=1:2.24.5-4 libgtkmm-2.4-dev=1:2.24.5-4 libgudev-1.0-0=233-1 libharfbuzz-dev=2.6.4-1 libharfbuzz-gobject0=2.6.4-1 libharfbuzz-icu0=2.6.4-1 libharfbuzz0b=2.6.4-1 libhdf5-103=1.10.4+repack-11 libhdf5-cpp-103=1.10.4+repack-11 libhdf5-dev=1.10.4+repack-11 libheif1=1.6.1-1 libhogweed5=3.5.1+really3.5.1-2 libice-dev=2:1.0.9-2 libice6=2:1.0.9-2 libicu-dev=63.2-2 libicu63=63.2-2 libidn2-0=2.3.0-1 libinput-bin=1.15.3-1 libinput10=1.15.3-1 libisl22=0.22.1-1 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libxkbcommon0=0.10.0-1 libxml-libxml-perl=2.0134+dfsg-2 libxml-namespacesupport-perl=1.12-1 libxml-sax-base-perl=1.09-1 libxml-sax-perl=1.02+dfsg-1 libxml2=2.9.10+dfsg-4 libxml2-utils=2.9.10+dfsg-4 libxmu-dev=2:1.1.2-2+b3 libxmu-headers=2:1.1.2-2 libxmu6=2:1.1.2-2+b3 libxrandr-dev=2:1.5.1-1 libxrandr2=2:1.5.1-1 libxrender-dev=1:0.9.10-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxt-dev=1:1.1.5-1+b3 libxt6=1:1.1.5-1+b3 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.7-4 libzstd1=1.4.4+dfsg-3 linux-libc-dev=5.4.19-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-1.2 man-db=2.9.1-1 matlab-support-dev=0.0.21.1 mawk=1.3.4.20200120-2 mime-support=3.64 ncurses-base=6.2-1 ncurses-bin=6.2-1 octave=5.2.0-1 octave-common=5.2.0-1 pango1.0-tools=1.42.4-8 patch=2.7.6-6 perl=5.30.0-9 perl-base=5.30.0-9 perl-modules-5.30=5.30.0-9 pkg-config=0.29-6 po-debconf=1.0.21 python3=3.8.2-1 python3-distutils=3.8.2-2 python3-lib2to3=3.8.2-2 python3-minimal=3.8.2-1 python3.8=3.8.2-1 python3.8-minimal=3.8.2-1 qt5-qmake=5.12.5+dfsg-9 qt5-qmake-bin=5.12.5+dfsg-9 qtbase5-dev=5.12.5+dfsg-9 qtbase5-dev-tools=5.12.5+dfsg-9 qtchooser=66-2 readline-common=8.0-4 sed=4.7-1 sensible-utils=0.0.12+nmu1 shared-mime-info=1.10-1 sysvinit-utils=2.96-2.1 tar=1.30+dfsg-6+b1 tex-common=6.13 texinfo=6.7.0.dfsg.2-5 ucf=3.0038+nmu1 util-linux=2.34-0.1 uuid-dev=2.34-0.1 x11-common=1:7.7+20 x11proto-composite-dev=1:2019.2-1 x11proto-core-dev=2019.2-1 x11proto-damage-dev=1:2019.2-1 x11proto-dev=2019.2-1 x11proto-fixes-dev=1:2019.2-1 x11proto-input-dev=2019.2-1 x11proto-randr-dev=2019.2-1 x11proto-xext-dev=2019.2-1 x11proto-xinerama-dev=2019.2-1 xkb-data=2.29-2 xorg-sgml-doctools=1:1.11-1 xtrans-dev=1.4.0-1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200411T143911Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200311T211915Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d mrtrix3=3.0~rc3+git135-g2b8e7d0c2-5 && mkdir -p /build/mrtrix3-hHPmSz && dpkg-source --no-check -x /*.dsc /build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2 && chown -R builduser:builduser /build/mrtrix3-hHPmSz" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1584019094" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/mrtrix3-hHPmSz /tmp/mrtrix3-3.0~rc3+git135-g2b8e7d0c2-5qaeubwkw bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200311T211915Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.nknwPQTe0k as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.nknwPQTe0k Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200311T211915Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200311T211915Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (671 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4511 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.29-10) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200411T143911Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200311T211915Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.nknwPQTe0k Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200411T143911Z unstable InRelease [146 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20200311T211915Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20200411T143911Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200411T143911Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200411T143911Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20200411T143911Z unstable/main amd64 Packages [11.2 MB] Fetched 33.9 MB in 30s (1141 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.nknwPQTe0k I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d mrtrix3=3.0~rc3+git135-g2b8e7d0c2-5 && mkdir -p /build/mrtrix3-hHPmSz && dpkg-source --no-check -x /*.dsc /build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2 && chown -R builduser:builduser /build/mrtrix3-hHPmSz"' exec /tmp/mmdebstrap.nknwPQTe0k Reading package lists... NOTICE: 'mrtrix3' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mrtrix3.git Please use: git clone https://salsa.debian.org/med-team/mrtrix3.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 17.6 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main mrtrix3 3.0~rc3+git135-g2b8e7d0c2-5 (dsc) [2402 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main mrtrix3 3.0~rc3+git135-g2b8e7d0c2-5 (tar) [17.5 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main mrtrix3 3.0~rc3+git135-g2b8e7d0c2-5 (diff) [44.2 kB] Fetched 17.6 MB in 15s (1196 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'mrtrix3_3.0~rc3+git135-g2b8e7d0c2-5.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting mrtrix3 in /build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2 dpkg-source: info: unpacking mrtrix3_3.0~rc3+git135-g2b8e7d0c2.orig.tar.gz dpkg-source: info: unpacking mrtrix3_3.0~rc3+git135-g2b8e7d0c2-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying up_blend_python dpkg-source: info: applying changeset_7fb509cf35d5862f073faaa7e136e987486960d9.diff dpkg-source: info: applying changeset_1c1d3304791bd029bca744ff6634bfa4824f6938.diff dpkg-source: info: applying deb_run_tests dpkg-source: info: applying debian_build_cfg dpkg-source: info: applying python3.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1584019094" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.nknwPQTe0k dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0~rc3+git135-g2b8e7d0c2-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' ./build clean find . -name '*.pyc' -delete rm clean \ config configure.log build.log \ core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp rm: cannot remove 'clean': No such file or directory rm: cannot remove 'config': No such file or directory rm: cannot remove 'configure.log': No such file or directory rm: cannot remove 'core/version.cpp': No such file or directory rm: cannot remove 'lib/mrtrix3/_version.py': No such file or directory rm: cannot remove 'src/exec_version.cpp': No such file or directory make[1]: [debian/rules:68: override_dh_clean] Error 1 (ignored) dh_clean make[1]: Leaving directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' debian/rules binary-indep dh binary-indep dh_update_autotools_config -i dh_autoreconf -i debian/rules override_dh_auto_configure make[1]: Entering directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' ./configure -openmp # -debug MRtrix build type requested: release version with openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (Debian 9.2.1-31) 9.2.1 20200306 Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.3.7 Checking for zlib compression library: 1.2.11 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.1.0 Checking for FFTW library: fftw-3.3.8-sse2-avx Checking for OpenMP support: ok Checking for Qt moc: moc (version 5.12.5) Checking for Qt qmake: qmake (version 5.12.5) Checking for Qt rcc: rcc (version 5.12.5) Checking for Qt: 5.12.5 writing configuration to file './config': ok make[1]: Leaving directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' debian/rules override_dh_auto_build make[1]: Entering directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' ./build -verbose active config is default reading configuration from "config"... getting git version in folder "."... not found getting git version in folder "."... not found version file "./core/version.cpp" is out of date - updating getting git version in folder "."... not found version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... building targets: bin/sh2peaks bin/mesh2voxel bin/fixelconvert bin/tensor2metric bin/5tt2vis bin/tcktransform bin/mredit bin/mrcalc bin/warp2metric bin/maskfilter bin/dwidenoise bin/mrcrop bin/tckgen bin/tsfvalidate bin/mrresize bin/5ttcheck bin/transformcalc bin/fixel2voxel bin/dcmedit bin/tckedit bin/tcksift2 bin/fod2dec bin/5ttedit bin/mrstats bin/mrconvert bin/warpinit bin/dwi2adc bin/tsfdivide bin/dirflip bin/tckstats bin/voxel2fixel bin/shview bin/tsfmult bin/mrthreshold bin/mrinfo bin/dwiextract bin/mrview bin/mrhistmatch bin/mrmath bin/mrtransform bin/mrdump bin/mtnormalise bin/voxel2mesh bin/dwi2mask bin/dirorder bin/mrcat bin/dirmerge bin/warpcorrect bin/meshconvert bin/tcksample bin/vectorstats bin/tckdfc bin/amp2response bin/tckglobal bin/tsfsmooth bin/transformcompose bin/warpconvert bin/fod2fixel bin/labelconvert bin/shbasis bin/fixel2sh bin/dwi2tensor bin/tsfthreshold bin/mrpad bin/sh2response bin/fixel2tsf bin/mraverageheader bin/sh2amp bin/mrclusterstats bin/connectome2tck bin/amp2sh bin/tckconvert bin/tcksift bin/tck2fixel bin/label2colour bin/fixelcfestats bin/fixelcrop bin/shconv bin/mrfilter bin/mrcheckerboardmask bin/peaks2amp bin/dirsplit bin/connectomestats bin/afdconnectivity bin/dcminfo bin/tckmap bin/fixelreorient bin/mrmetric bin/label2mesh bin/transformconvert bin/mrdegibbs bin/mrhistogram bin/dwi2fod bin/sh2power bin/tckinfo bin/warpinvert bin/fixelcorrespondence bin/dirgen bin/dwinormalise bin/5tt2gmwmi bin/dirstat bin/tsfinfo bin/maskdump bin/mrregister bin/tckresample bin/meshfilter bin/tck2connectome TODO list contains 505 items launching 32 threads g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/patient.cpp -o tmp/core/file/dicom/patient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/mrtrix.cpp -o tmp/core/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/tiff.cpp -o tmp/core/image_io/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_sparse_legacy.cpp -o tmp/core/formats/mrtrix_sparse_legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/permutation.cpp -o tmp/core/math/stats/permutation.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/SH.cpp -o tmp/core/math/SH.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem 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tmp/src/exec_version.o ( 73/505) [CC] tmp/src/surface/filter/base.o ( 74/505) [CC] tmp/src/surface/freesurfer.o ( 75/505) [CC] tmp/src/surface/algo/mesh2image.o ( 76/505) [CC] tmp/src/connectome/lut.o ( 77/505) [CC] tmp/cmd/mesh2voxel.o ( 78/505) [CC] tmp/src/surface/filter/vertex_transform.o ( 79/505) [CC] tmp/src/surface/scalar.o ( 80/505) [CC] tmp/src/surface/mesh_multi.o ( 81/505) [CC] tmp/src/surface/mesh.o ( 82/505) [CC] tmp/src/connectome/connectome.o ( 83/505) [CC] tmp/src/surface/polygon.o ( 84/505) [CC] tmp/cmd/fixelconvert.o ( 85/505) [CC] tmp/cmd/tensor2metric.o ( 86/505) [CC] tmp/src/dwi/gradient.o ( 87/505) [CC] tmp/src/dwi/shells.o ( 88/505) [CC] tmp/cmd/5tt2vis.o ( 89/505) [CC] tmp/src/dwi/tractography/ACT/act.o ( 90/505) [CC] tmp/src/dwi/tractography/roi.o ( 91/505) [CC] tmp/src/dwi/tractography/properties.o ( 92/505) [CC] tmp/src/dwi/tractography/seeding/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti2_utils.cpp -o tmp/core/file/nifti2_utils.o: core/file/nifti2_utils.cpp: In function ‘void MR::File::NIfTI2::write(nifti_2_header&, const MR::Header&, bool)’: core/file/nifti2_utils.cpp:267:17: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 267 | strncpy ( (char*) &NH.magic+4, signature_extra, 4); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 93/505) [CC] tmp/src/dwi/tractography/rng.o ( 94/505) [CC] tmp/cmd/tcktransform.o ( 95/505) [CC] tmp/src/dwi/tractography/file_base.o ( 96/505) [CC] tmp/cmd/mredit.o ( 97/505) [CC] tmp/cmd/mrcalc.o ( 98/505) [CC] tmp/cmd/warp2metric.o ( 99/505) [CC] tmp/cmd/maskfilter.o (100/505) [CC] tmp/cmd/dwidenoise.o (101/505) [CC] tmp/cmd/mrcrop.o (102/505) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o (103/505) [CC] tmp/src/dwi/tractography/tracking/shared.o (104/505) [CC] tmp/src/dwi/directions/predefined.o (105/505) [CC] tmp/src/dwi/tractography/resampling/upsampler.o (106/505) [CC] tmp/src/dwi/fmls.o (107/505) [CC] tmp/src/dwi/tractography/resampling/resampling.o (108/505) [CC] tmp/src/dwi/tractography/tracking/method.o (109/505) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o (110/505) [CC] tmp/src/dwi/tractography/mapping/mapping.o (111/505) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o (112/505) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o: src/surface/mesh.cpp: In member function ‘void MR::Surface::Mesh::save_stl(const string&, bool) const’: src/surface/mesh.cpp:660:17: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound 80 equals destination size [-Wstringop-truncation] 660 | strncpy (header, string.c_str(), 80); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ (113/505) [CC] tmp/src/dwi/tractography/resampling/endpoints.o (114/505) [CC] tmp/src/dwi/tractography/seeding/dynamic.o (115/505) [CC] tmp/src/dwi/tractography/mapping/voxel.o (116/505) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o (117/505) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o (118/505) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o (119/505) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o (120/505) [CC] tmp/src/dwi/directions/set.o (121/505) [CC] tmp/src/dwi/directions/mask.o (122/505) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o (123/505) [CC] tmp/src/dwi/tractography/resampling/downsampler.o (124/505) [CC] tmp/src/dwi/tractography/seeding/basic.o (125/505) [CC] tmp/src/dwi/tractography/seeding/seeding.o (126/505) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o (127/505) [CC] tmp/src/dwi/tractography/tracking/tractography.o (128/505) [CC] tmp/src/dwi/tractography/resampling/arc.o (129/505) [CC] tmp/src/dwi/tractography/tracking/early_exit.o (130/505) [CC] tmp/src/dwi/tractography/mapping/mapper.o (131/505) [CC] tmp/cmd/tckgen.o (132/505) [CC] tmp/cmd/tsfvalidate.o (133/505) [CC] tmp/cmd/mrresize.o (134/505) [CC] tmp/cmd/5ttcheck.o (135/505) [CC] tmp/cmd/transformcalc.o (136/505) [CC] tmp/cmd/fixel2voxel.o (137/505) [CC] tmp/cmd/dcmedit.o (138/505) [CC] tmp/src/dwi/tractography/editing/receiver.o (139/505) [CC] tmp/src/dwi/tractography/editing/editing.o (140/505) [CC] tmp/src/dwi/tractography/weights.o (141/505) [CC] tmp/cmd/tckedit.o (142/505) [CC] tmp/src/dwi/tractography/editing/worker.o (143/505) [CC] tmp/src/dwi/tractography/SIFT/sift.o (144/505) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrresize.cpp -o tmp/cmd/mrresize.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckedit.cpp -o tmp/cmd/tckedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/track_index_range.cpp -o tmp/src/dwi/tractography/SIFT/track_index_range.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/track_contribution.cpp -o tmp/src/dwi/tractography/SIFT/track_contribution.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/streamline_stats.cpp -o tmp/src/dwi/tractography/SIFT2/streamline_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinit.cpp -o tmp/cmd/warpinit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckstats.cpp -o tmp/cmd/tckstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o moc src/gui/color_button.h -o tmp/src/gui/color_button_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/color_button_moc.cpp -o tmp/src/gui/color_button_moc.o rcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/icons.cpp -o tmp/src/gui/shview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/progress.cpp -o tmp/src/gui/dialog/progress.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dicom.cpp -o tmp/src/gui/dialog/dicom.o moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/halfsphere.cpp -o tmp/src/gui/shapes/halfsphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/opengl/lighting_moc.cpp -o tmp/src/gui/opengl/lighting_moc.o moc src/gui/dwi/render_frame.h -o tmp/src/gui/dwi/render_frame_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/font.cpp -o tmp/src/gui/opengl/font.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ cmd/shview.cpp -o tmp/cmd/shview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/shader.cpp -o tmp/src/gui/opengl/shader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/projection.cpp -o tmp/src/gui/projection.o moc src/gui/lighting_dock.h -o tmp/src/gui/lighting_dock_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/lighting_dock_moc.cpp -o tmp/src/gui/lighting_dock_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl_core_3_3.cpp -o tmp/src/gui/opengl/gl_core_3_3.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/lighting_dock.cpp -o tmp/src/gui/lighting_dock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl.cpp -o tmp/src/gui/opengl/gl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/color_button.cpp -o tmp/src/gui/color_button.o (145/505) [CC] tmp/cmd/tcksift2.o (146/505) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o (147/505) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o (148/505) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o (149/505) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o (150/505) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o (151/505) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o (152/505) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o (153/505) [CC] tmp/cmd/fod2dec.o (154/505) [CC] tmp/cmd/5ttedit.o (155/505) [CC] tmp/cmd/mrstats.o (156/505) [CC] tmp/cmd/mrconvert.o (157/505) [CC] tmp/cmd/warpinit.o (158/505) [CC] tmp/cmd/dwi2adc.o (159/505) [CC] tmp/cmd/tsfdivide.o (160/505) [CC] tmp/cmd/dirflip.o (161/505) [CC] tmp/src/dwi/directions/file.o (162/505) [CC] tmp/cmd/tckstats.o (163/505) [CC] tmp/cmd/voxel2fixel.o (164/505) [MOC] tmp/src/gui/color_button_moc.cpp (165/505) [CC] tmp/src/gui/color_button_moc.o (166/505) [RCC] tmp/src/gui/shview/icons.cpp (167/505) [CC] tmp/src/gui/shview/icons.o (168/505) [CC] tmp/src/gui/dialog/progress.o (169/505) [CC] tmp/src/gui/dialog/dicom.o (170/505) [MOC] tmp/src/gui/shview/render_window_moc.cpp (171/505) [CC] tmp/src/gui/shapes/halfsphere.o (172/505) [CC] tmp/src/gui/shview/render_window_moc.o (173/505) [MOC] tmp/src/gui/opengl/lighting_moc.cpp (174/505) [CC] tmp/src/gui/opengl/lighting_moc.o (175/505) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp (176/505) [CC] tmp/src/gui/dwi/render_frame_moc.o (177/505) [CC] tmp/src/gui/opengl/font.o (178/505) [CC] tmp/cmd/shview.o (179/505) [CC] tmp/src/gui/opengl/shader.o (180/505) [CC] tmp/src/gui/dialog/report_exception.o (181/505) [CC] tmp/src/gui/dialog/list.o (182/505) [CC] tmp/src/gui/projection.o (183/505) [MOC] tmp/src/gui/lighting_dock_moc.cpp (184/505) [CC] tmp/src/gui/lighting_dock_moc.o (185/505) [CC] tmp/src/gui/opengl/gl_core_3_3.o (186/505) [CC] tmp/src/gui/lighting_dock.o (187/505) [CC] tmp/src/gui/opengl/gl.o (188/505) [CC] tmp/src/gui/color_button.o (189/505) [CC] tmp/src/gui/dwi/renderer.o (190/505) [CC] tmp/src/gui/shview/render_window.o (191/505) [CC] tmp/src/gui/dwi/render_frame.o (192/505) [CC] tmp/src/gui/dialog/dialog.o (193/505) [MOC] tmp/src/gui/gui_moc.cpp (194/505) [CC] tmp/src/gui/gui_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/shview/../../../../src/gui/shview/render_window.h:19, from tmp/src/gui/shview/render_window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/render_frame.cpp -o tmp/src/gui/dwi/render_frame.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o moc src/gui/gui.h -o tmp/src/gui/gui_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/gui_moc.cpp -o tmp/src/gui/gui_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/gui.cpp -o tmp/src/gui/gui.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/file.cpp -o tmp/src/gui/dialog/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/lighting.cpp -o tmp/src/gui/opengl/lighting.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o (195/505) [CC] tmp/src/gui/gui.o (196/505) [CC] tmp/src/gui/dialog/file.o (197/505) [CC] tmp/src/gui/opengl/lighting.o (198/505) [CC] tmp/cmd/tsfmult.o (199/505) [CC] tmp/cmd/mrthreshold.o (200/505) [CC] tmp/cmd/mrinfo.o (201/505) [CC] tmp/cmd/dwiextract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o: In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from tmp/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:25, from tmp/src/gui/dwi/render_frame_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (202/505) [CC] tmp/src/gui/mrview/tool/fixel/directory.o (203/505) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o (204/505) [CC] tmp/src/gui/mrview/mode/base.o (205/505) [CC] tmp/src/gui/dialog/image_properties.o (206/505) [CC] tmp/src/gui/mrview/tool/view.o (207/505) [CC] tmp/src/gui/mrview/window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ cmd/shview.cpp -o tmp/cmd/shview.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from cmd/shview.cpp:22: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/file_data_vector.cpp -o tmp/src/gui/mrview/tool/connectome/file_data_vector.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/base.cpp -o tmp/src/gui/mrview/mode/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/image_properties.cpp -o tmp/src/gui/dialog/image_properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/view.cpp -o tmp/src/gui/mrview/tool/view.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o moc src/gui/mrview/spin_box.h -o tmp/src/gui/mrview/spin_box_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/spin_box_moc.cpp -o tmp/src/gui/mrview/spin_box_moc.o moc src/gui/mrview/mode/lightbox.h -o tmp/src/gui/mrview/mode/lightbox_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/lightbox_moc.cpp -o tmp/src/gui/mrview/mode/lightbox_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/adjust_button.cpp -o tmp/src/gui/mrview/adjust_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/selection.cpp -o tmp/src/gui/mrview/tool/connectome/selection.o rcc icons/mrview.qrc -o tmp/src/gui/mrview/icons.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/icons.cpp -o tmp/src/gui/mrview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/image4D.cpp -o tmp/src/gui/mrview/tool/fixel/image4D.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/colourmap_observers.cpp -o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o moc src/gui/mrview/tool/odf/odf.h -o tmp/src/gui/mrview/tool/odf/odf_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/odf_moc.cpp -o tmp/src/gui/mrview/tool/odf/odf_moc.o (208/505) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp (209/505) [CC] tmp/src/gui/mrview/spin_box_moc.o (210/505) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp (211/505) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o (212/505) [CC] tmp/src/gui/mrview/adjust_button.o (213/505) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o (214/505) [CC] tmp/src/gui/mrview/tool/connectome/selection.o (215/505) [RCC] tmp/src/gui/mrview/icons.cpp (216/505) [CC] tmp/src/gui/mrview/icons.o (217/505) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o (218/505) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/projection.cpp -o tmp/src/gui/projection.o: In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/projection.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/projection.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (219/505) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp (220/505) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o (221/505) [CC] tmp/src/gui/mrview/tool/overlay.o (222/505) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (223/505) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o (224/505) [CC] tmp/src/gui/mrview/tool/connectome/node.o (225/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o (226/505) [CC] tmp/src/gui/mrview/tool/odf/preview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/shview/render_window.h:19, from src/gui/shview/render_window.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (227/505) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (228/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o (229/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (230/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/render_frame.cpp -o tmp/src/gui/dwi/render_frame.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ src/gui/dwi/render_frame.cpp: In member function ‘virtual void MR::GUI::DWI::RenderFrame::paintGL()’: src/gui/dwi/render_frame.cpp:173:143: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 173 | P = GL::frustum (-horizontal+OS_x*incx, -horizontal+ (1+OS_x) *incx, -vertical+OS_y*incy, -vertical+ (1+OS_y) *incy, near_, dist+3.0); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ src/gui/dwi/render_frame.cpp:176:89: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 176 | P = GL::frustum (-horizontal, horizontal, -vertical, vertical, near_, dist+3.0); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/dwi/render_frame.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o moc src/gui/mrview/tool/connectome/selection.h -o tmp/src/gui/mrview/tool/connectome/selection_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/selection_moc.cpp -o tmp/src/gui/mrview/tool/connectome/selection_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o moc src/gui/mrview/tool/tractography/tractography.h -o tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o moc src/gui/mrview/adjust_button.h -o tmp/src/gui/mrview/adjust_button_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/adjust_button_moc.cpp -o tmp/src/gui/mrview/adjust_button_moc.o (231/505) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp (232/505) [CC] tmp/src/gui/mrview/adjust_button_moc.o (233/505) [CC] tmp/src/gui/mrview/tool/screen_capture.o (234/505) [CC] tmp/src/gui/mrview/mode/lightbox.o (235/505) [CC] tmp/cmd/mrview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/lightbox_moc.cpp -o tmp/src/gui/mrview/mode/lightbox_moc.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/lightbox.h:19, from tmp/src/gui/mrview/mode/lightbox_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (236/505) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (237/505) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/odf_moc.cpp -o tmp/src/gui/mrview/tool/odf/odf_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/odf.h:20, from tmp/src/gui/mrview/tool/odf/odf_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ cmd/mrview.cpp -o tmp/cmd/mrview.o moc src/gui/mrview/tool/connectome/connectome.h -o tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o moc src/gui/mrview/tool/view.h -o tmp/src/gui/mrview/tool/view_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/view_moc.cpp -o tmp/src/gui/mrview/tool/view_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o (238/505) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o (239/505) [CC] tmp/src/gui/mrview/volume.o (240/505) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp (241/505) [CC] tmp/src/gui/mrview/tool/view_moc.o (242/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o: In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/renderer.cpp:21: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/renderer.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (243/505) [CC] tmp/src/gui/mrview/tool/odf/odf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractography.h:19, from tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (244/505) [CC] tmp/src/gui/mrview/tool/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/undoentry.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (245/505) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/selection.cpp -o tmp/src/gui/mrview/tool/connectome/selection.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/selection.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (246/505) [CC] tmp/src/gui/mrview/tool/odf/item.o (247/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/colourmap_observers.cpp -o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/colourmap_observers.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (248/505) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (249/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o (250/505) [MOC] tmp/src/gui/mrview/displayable_moc.cpp (251/505) [CC] tmp/src/gui/mrview/displayable_moc.o (252/505) [CC] tmp/src/gui/mrview/tool/connectome/edge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/fixel/../../../../../../src/gui/mrview/tool/fixel/fixel.h:19, from tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o moc src/gui/mrview/tool/connectome/node_list.h -o tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp -o tmp/src/gui/mrview/tool/connectome/node_list_moc.o moc src/gui/mrview/displayable.h -o tmp/src/gui/mrview/displayable_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/displayable_moc.cpp -o tmp/src/gui/mrview/displayable_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o (253/505) [CC] tmp/src/gui/mrview/tool/odf/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/preview.h:19, from src/gui/mrview/tool/odf/preview.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (254/505) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o (255/505) [CC] tmp/src/gui/shapes/sphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/view.cpp -o tmp/src/gui/mrview/tool/view.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/view.h:19, from src/gui/mrview/tool/view.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (256/505) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/base.cpp -o tmp/src/gui/mrview/mode/base.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/base.cpp:18: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/base.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/base.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/base.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/base.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/base.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/base.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (257/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (258/505) [CC] tmp/src/gui/mrview/colourmap_button_moc.o (259/505) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/node.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (260/505) [CC] tmp/src/gui/dialog/opengl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/image4D.cpp -o tmp/src/gui/mrview/tool/fixel/image4D.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/image4D.h:19, from src/gui/mrview/tool/fixel/image4D.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (261/505) [CC] tmp/src/gui/mrview/mode/ortho.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/tractography/tractography.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/sphere.cpp -o tmp/src/gui/shapes/sphere.o moc src/gui/mrview/colourmap_button.h -o tmp/src/gui/mrview/colourmap_button_moc.cpp moc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/colourmap_button_moc.cpp -o tmp/src/gui/mrview/colourmap_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/opengl.cpp -o tmp/src/gui/dialog/opengl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/ortho.cpp -o tmp/src/gui/mrview/mode/ortho.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/cursor.cpp -o tmp/src/gui/cursor.o moc src/gui/mrview/tool/overlay.h -o tmp/src/gui/mrview/tool/overlay_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o (262/505) [CC] tmp/src/gui/cursor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/overlay.h:19, from src/gui/mrview/tool/overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (263/505) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp (264/505) [CC] tmp/src/gui/mrview/tool/overlay_moc.o (265/505) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp (266/505) [CC] tmp/src/gui/mrview/combo_box_error_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/displayable_moc.cpp -o tmp/src/gui/mrview/displayable_moc.o: In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from tmp/src/gui/mrview/../../../../src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/displayable_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (267/505) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/volume.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (268/505) [CC] tmp/src/gui/mrview/mode/slice.o (269/505) [MOC] tmp/src/gui/mrview/window_moc.cpp (270/505) [CC] tmp/src/gui/mrview/window_moc.o (271/505) [CC] tmp/src/gui/mrview/colourmap_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/lightbox.h:19, from src/gui/mrview/mode/lightbox.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (272/505) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (273/505) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/view_moc.cpp -o tmp/src/gui/mrview/tool/view_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/view.h:19, from tmp/src/gui/mrview/tool/view_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ moc src/gui/mrview/combo_box_error.h -o tmp/src/gui/mrview/combo_box_error_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/combo_box_error_moc.cpp -o tmp/src/gui/mrview/combo_box_error_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o moc src/gui/mrview/window.h -o tmp/src/gui/mrview/window_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/window_moc.cpp -o tmp/src/gui/mrview/window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap_button.cpp -o tmp/src/gui/mrview/colourmap_button.o moc src/gui/mrview/tool/roi_editor/roi.h -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o moc src/gui/mrview/mode/ortho.h -o tmp/src/gui/mrview/mode/ortho_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o (274/505) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp (275/505) [CC] tmp/src/gui/mrview/mode/ortho_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o: In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/connectome.h:32, from tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (276/505) [CC] tmp/src/gui/mrview/gui_image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/base.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (277/505) [CC] tmp/src/gui/shapes/cylinder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp -o tmp/src/gui/mrview/tool/connectome/node_list_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/connectome/../../../../../../src/gui/mrview/tool/connectome/node_list.h:21, from tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (278/505) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ cmd/mrview.cpp -o tmp/cmd/mrview.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/projection.h: In instantiation of ‘void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]’: /usr/include/c++/9/bits/stl_uninitialized.h:222:18: required from ‘static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueType = false]’ /usr/include/c++/9/bits/stl_uninitialized.h:273:17: required from ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection]’ /usr/include/c++/9/bits/stl_uninitialized.h:384:39: required from ‘_ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection]’ /usr/include/c++/9/bits/stl_vector.h:1593:33: required from ‘void std::vector<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection]’ /usr/include/c++/9/bits/stl_vector.h:522:9: required from ‘std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::vector<_Tp, _Alloc>::allocator_type = std::allocator]’ ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared ‘constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&)’ is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/mrview/displayable.h:21, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from cmd/mrview.cpp:21: src/gui/opengl/shader.h:140:22: note: because ‘MR::GUI::GL::Shader::Program’ has user-provided ‘MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&)’ 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from src/gui/gui.h:19, from cmd/mrview.cpp:16: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method ‘MR::GUI::Projection::Projection(const MR::GUI::Projection&)’ first required here 75 | { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (279/505) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp (280/505) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o (281/505) [CC] tmp/src/gui/mrview/colourmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/screen_capture.cpp:20: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (282/505) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp (283/505) [CC] tmp/src/gui/dialog/image_properties_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/directory.h:19, from src/gui/mrview/tool/fixel/directory.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o moc src/gui/mrview/tool/screen_capture.h -o tmp/src/gui/mrview/tool/screen_capture_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap.cpp -o tmp/src/gui/mrview/colourmap.o moc src/gui/dialog/image_properties.h -o tmp/src/gui/dialog/image_properties_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cube.cpp -o tmp/src/gui/shapes/cube.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o moc src/gui/mrview/tool/tractography/track_scalar_file.h -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (284/505) [CC] tmp/src/gui/shapes/cube.o (285/505) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o (286/505) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (287/505) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/tractogram.h:20, from tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (288/505) [CC] tmp/src/gui/mrview/mode/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/connectome/node_list.h:21, from src/gui/mrview/tool/connectome/node_list.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (289/505) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/matrix_list.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (290/505) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp (291/505) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o (292/505) [CC] tmp/src/gui/mrview/combo_box_error.o (293/505) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/edge.cpp:24: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (294/505) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o (295/505) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/window_moc.cpp -o tmp/src/gui/mrview/window_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from tmp/src/gui/mrview/../../../../src/gui/mrview/window.h:24, from tmp/src/gui/mrview/window_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o moc src/gui/mrview/tool/odf/preview.h -o tmp/src/gui/mrview/tool/odf/preview_moc.cpp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/preview_moc.cpp -o tmp/src/gui/mrview/tool/odf/preview_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/combo_box_error.cpp -o tmp/src/gui/mrview/combo_box_error.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractogram.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o (296/505) [CC] tmp/src/gui/mrview/displayable.o (297/505) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/ortho.cpp -o tmp/src/gui/mrview/mode/ortho.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/projection.h: In instantiation of ‘void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]’: /usr/include/c++/9/bits/stl_uninitialized.h:222:18: required from ‘static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueType = false]’ /usr/include/c++/9/bits/stl_uninitialized.h:273:17: required from ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection]’ /usr/include/c++/9/bits/stl_uninitialized.h:384:39: required from ‘_ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection]’ /usr/include/c++/9/bits/stl_vector.h:1593:33: required from ‘void std::vector<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection]’ /usr/include/c++/9/bits/stl_vector.h:522:9: required from ‘std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::vector<_Tp, _Alloc>::allocator_type = std::allocator]’ ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared ‘constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&)’ is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/opengl/font.h:19, from src/gui/projection.h:20, from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/ortho.h:20, from src/gui/mrview/mode/ortho.cpp:16: src/gui/opengl/shader.h:140:22: note: because ‘MR::GUI::GL::Shader::Program’ has user-provided ‘MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&)’ 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from src/gui/mrview/mode/ortho.h:19, from src/gui/mrview/mode/ortho.cpp:16: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method ‘MR::GUI::Projection::Projection(const MR::GUI::Projection&)’ first required here 75 | { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (298/505) [CC] tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o: In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/overlay.h:19, from tmp/src/gui/mrview/tool/overlay_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (299/505) [CC] tmp/cmd/mrmath.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/window.cpp:28: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/projection.h: In instantiation of ‘void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]’: /usr/include/c++/9/bits/stl_uninitialized.h:222:18: required from ‘static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueType = false]’ /usr/include/c++/9/bits/stl_uninitialized.h:273:17: required from ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection]’ /usr/include/c++/9/bits/stl_uninitialized.h:384:39: required from ‘_ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection]’ /usr/include/c++/9/bits/stl_vector.h:1593:33: required from ‘void std::vector<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection]’ /usr/include/c++/9/bits/stl_vector.h:522:9: required from ‘std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::vector<_Tp, _Alloc>::allocator_type = std::allocator]’ ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared ‘constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&)’ is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/opengl/font.h:19, from src/gui/projection.h:20, from src/gui/mrview/mode/base.h:23, from src/gui/mrview/window.cpp:28: src/gui/opengl/shader.h:140:22: note: because ‘MR::GUI::GL::Shader::Program’ has user-provided ‘MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&)’ 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from src/gui/mrview/window.cpp:16: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method ‘MR::GUI::Projection::Projection(const MR::GUI::Projection&)’ first required here 75 | { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (300/505) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/model.h:24, from src/gui/mrview/tool/odf/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (301/505) [CC] tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/base_fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (302/505) [CC] tmp/cmd/mtnormalise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap.cpp -o tmp/src/gui/mrview/colourmap.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/colourmap.cpp:19: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (303/505) [CC] tmp/cmd/voxel2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/projection.h: In instantiation of ‘void std::_Construct(_T1*, _Args&& ...) [with _T1 = MR::GUI::Projection; _Args = {const MR::GUI::Projection&}]’: /usr/include/c++/9/bits/stl_uninitialized.h:222:18: required from ‘static _ForwardIterator std::__uninitialized_fill_n<_TrivialValueType>::__uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; bool _TrivialValueType = false]’ /usr/include/c++/9/bits/stl_uninitialized.h:273:17: required from ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection]’ /usr/include/c++/9/bits/stl_uninitialized.h:384:39: required from ‘_ForwardIterator std::__uninitialized_fill_n_a(_ForwardIterator, _Size, const _Tp&, std::allocator<_Tp2>&) [with _ForwardIterator = MR::GUI::Projection*; _Size = long unsigned int; _Tp = MR::GUI::Projection; _Tp2 = MR::GUI::Projection]’ /usr/include/c++/9/bits/stl_vector.h:1593:33: required from ‘void std::vector<_Tp, _Alloc>::_M_fill_initialize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection]’ /usr/include/c++/9/bits/stl_vector.h:522:9: required from ‘std::vector<_Tp, _Alloc>::vector(std::vector<_Tp, _Alloc>::size_type, const value_type&, const allocator_type&) [with _Tp = MR::GUI::Projection; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = MR::GUI::Projection; std::vector<_Tp, _Alloc>::allocator_type = std::allocator]’ ./core/types.h:255:33: required from here src/gui/projection.h:169:11: warning: implicitly-declared ‘constexpr MR::GUI::GL::Shader::Program::Program(const MR::GUI::GL::Shader::Program&)’ is deprecated [-Wdeprecated-copy] 169 | class Projection : public ModelViewProjection | ^~~~~~~~~~ In file included from src/gui/opengl/font.h:19, from src/gui/projection.h:20, from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:20, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: src/gui/opengl/shader.h:140:22: note: because ‘MR::GUI::GL::Shader::Program’ has user-provided ‘MR::GUI::GL::Shader::Program& MR::GUI::GL::Shader::Program::operator=(MR::GUI::GL::Shader::Program&)’ 140 | Program& operator= (Program& P) { | ^~~~~~~~ In file included from /usr/include/c++/9/bits/stl_tempbuf.h:60, from /usr/include/c++/9/bits/stl_algo.h:62, from /usr/include/c++/9/algorithm:62, from ./core/mrtrix.h:25, from ./core/cmdline_option.h:27, from ./core/app.h:27, from tmp/src/gui/mrview/mode/../../../../../src/gui/mrview/mode/ortho.h:19, from tmp/src/gui/mrview/mode/ortho_moc.cpp:9: /usr/include/c++/9/bits/stl_construct.h:75:7: note: synthesized method ‘MR::GUI::Projection::Projection(const MR::GUI::Projection&)’ first required here 75 | { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (304/505) [CC] tmp/cmd/dwi2mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o: In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from tmp/src/gui/mrview/tool/roi_editor/../../../../../../src/gui/mrview/tool/roi_editor/roi.h:23, from tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (305/505) [CC] tmp/cmd/dirorder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from tmp/src/gui/mrview/tool/../../../../../src/gui/mrview/tool/screen_capture.h:23, from tmp/src/gui/mrview/tool/screen_capture_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (306/505) [CC] tmp/cmd/mrcat.o (307/505) [CC] tmp/cmd/dirmerge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/slice.h:20, from src/gui/mrview/mode/slice.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (308/505) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/roi_editor/model.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (309/505) [CC] tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/connectome/node_overlay.h:22, from src/gui/mrview/tool/connectome/node_overlay.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (310/505) [CC] tmp/cmd/tcksample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from tmp/src/gui/mrview/tool/tractography/../../../../../../src/gui/mrview/tool/tractography/track_scalar_file.h:20, from tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirorder.cpp -o tmp/cmd/dirorder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcat.cpp -o tmp/cmd/mrcat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o g++ tmp/core/file/dicom/patient.o tmp/core/image_io/tiff.o tmp/core/mrtrix.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/math/SH.o tmp/core/math/stats/permutation.o tmp/core/formats/nifti1.o tmp/core/file/mmap.o tmp/core/file/json_utils.o tmp/core/image_io/base.o tmp/core/file/dicom/study.o tmp/core/stats.o tmp/core/image_io/scratch.o tmp/core/formats/tiff.o tmp/core/file/dicom/element.o tmp/core/file/tiff.o tmp/core/file/dicom/tree.o tmp/core/file/dicom/select_cmdline.o tmp/core/file/dicom/dict.o tmp/core/image_io/sparse.o tmp/core/file/name_parser.o tmp/core/file/nifti_utils.o tmp/core/formats/mrtrix_gz.o tmp/core/formats/pipe.o tmp/core/formats/analyse.o tmp/core/math/stats/glm.o tmp/core/formats/xds.o tmp/core/formats/dicom.o tmp/core/algo/histogram.o tmp/core/version.o tmp/core/file/nifti2_utils.o tmp/core/file/dicom/image.o tmp/core/math/bessel.o tmp/core/exception.o tmp/core/formats/mri.o tmp/core/header.o tmp/core/image_io/gz.o tmp/core/signal_handler.o tmp/core/file/dicom/series.o tmp/core/image_io/default.o tmp/core/stride.o tmp/core/formats/nifti2.o tmp/core/formats/list.o tmp/core/math/average_space.o tmp/core/datatype.o tmp/core/file/config.o tmp/core/bitset.o tmp/core/phase_encoding.o tmp/core/axes.o tmp/core/formats/mgh.o tmp/core/file/nifti1_utils.o tmp/core/progressbar.o tmp/core/file/key_value.o tmp/core/formats/mgz.o tmp/core/image_io/ram.o tmp/core/image_io/mosaic.o tmp/core/file/dicom/quick_scan.o tmp/core/adapter/reslice.o tmp/core/formats/ram.o tmp/core/image_io/fetch_store.o tmp/core/file/mgh.o tmp/core/formats/mrtrix.o tmp/core/formats/nifti2_gz.o tmp/core/file/ofstream.o tmp/core/app.o tmp/core/image_io/pipe.o tmp/core/formats/mrtrix_utils.o tmp/core/thread.o tmp/core/formats/nifti1_gz.o tmp/core/file/dicom/mapper.o -shared -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -o lib/libmrtrix.so (311/505) [CC] tmp/src/stats/permtest.o (312/505) [LD] lib/libmrtrix.so g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/displayable.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (313/505) [CC] tmp/src/stats/permstack.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/track_scalar_file.h:20, from src/gui/mrview/tool/tractography/track_scalar_file.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (314/505) [CC] tmp/cmd/vectorstats.o (315/505) [CC] tmp/src/dwi/tractography/mapping/writer.o (316/505) [CC] tmp/cmd/tckdfc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/preview_moc.cpp -o tmp/src/gui/mrview/tool/odf/preview_moc.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from tmp/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19, from tmp/src/gui/mrview/tool/odf/preview_moc.cpp:9: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (317/505) [CC] tmp/cmd/amp2response.o (318/505) [LB] bin/sh2peaks (319/505) [LB] bin/mesh2voxel g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/base.h:21, from src/gui/mrview/tool/fixel/fixel.h:19, from src/gui/mrview/tool/fixel/fixel.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permstack.cpp -o tmp/src/stats/permstack.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/writer.cpp -o tmp/src/dwi/tractography/mapping/writer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o g++ tmp/cmd/sh2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2peaks g++ tmp/src/surface/filter/base.o tmp/src/surface/freesurfer.o tmp/src/surface/algo/mesh2image.o tmp/src/connectome/lut.o tmp/src/exec_version.o tmp/cmd/mesh2voxel.o tmp/src/surface/filter/vertex_transform.o tmp/src/surface/scalar.o tmp/src/surface/mesh_multi.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/surface/polygon.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel g++ tmp/cmd/fixelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconvert g++ tmp/cmd/tensor2metric.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tensor2metric g++ tmp/cmd/5tt2vis.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2vis g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/properties.o tmp/src/exec_version.o tmp/cmd/tcktransform.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcktransform g++ tmp/cmd/mredit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mredit g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/cmd/mrcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcalc g++ tmp/cmd/warp2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warp2metric g++ tmp/cmd/maskfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskfilter g++ tmp/src/exec_version.o tmp/cmd/dwidenoise.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise g++ tmp/cmd/mrcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcrop g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/properties.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfvalidate.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfvalidate g++ tmp/cmd/mrresize.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrresize g++ tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/rng.o tmp/cmd/5ttcheck.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttcheck g++ tmp/cmd/transformcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcalc g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/properties.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o tmp/cmd/fixel2voxel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2voxel g++ tmp/cmd/dcmedit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcmedit g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/editing/receiver.o tmp/src/dwi/tractography/editing/editing.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/cmd/tckedit.o tmp/src/dwi/tractography/editing/worker.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckedit g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/cmd/tcksift2.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/SIFT2/tckfactor.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/SIFT2/reg_calculator.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/SIFT2/fixel_updater.o tmp/src/dwi/tractography/SIFT2/line_search.o tmp/src/dwi/tractography/SIFT2/streamline_stats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/fmls.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift2 (320/505) [LB] bin/fixelconvert (321/505) [LB] bin/tensor2metric (322/505) [LB] bin/5tt2vis (323/505) [LB] bin/tcktransform (324/505) [LB] bin/mredit (325/505) [LB] bin/mrcalc (326/505) [LB] bin/warp2metric (327/505) [LB] bin/maskfilter (328/505) [LB] bin/dwidenoise (329/505) [LB] bin/mrcrop (330/505) [LB] bin/tsfvalidate (331/505) [LB] bin/mrresize (332/505) [LB] bin/5ttcheck (333/505) [LB] bin/transformcalc (334/505) [LB] bin/fixel2voxel (335/505) [LB] bin/dcmedit (336/505) [LB] bin/tckedit (337/505) [LB] bin/tcksift2 (338/505) [LB] bin/fod2dec g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/tool/odf/item.h:24, from src/gui/mrview/tool/odf/item.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/cmd/fod2dec.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2dec g++ tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/5ttedit.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit g++ tmp/src/exec_version.o tmp/cmd/mrstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats g++ tmp/cmd/warpinit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinit g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/src/exec_version.o tmp/cmd/dwi2adc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/properties.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfdivide.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfdivide g++ tmp/cmd/dirflip.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirflip g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/tckstats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/weights.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckstats g++ tmp/cmd/voxel2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2fixel g++ tmp/src/gui/color_button_moc.o tmp/src/dwi/directions/predefined.o tmp/src/gui/shview/icons.o tmp/src/gui/dialog/progress.o tmp/src/gui/dialog/dicom.o tmp/src/gui/shview/render_window_moc.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/opengl/font.o tmp/src/exec_version.o tmp/cmd/shview.o tmp/src/dwi/directions/set.o tmp/src/gui/opengl/shader.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dialog/list.o tmp/src/gui/projection.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/lighting_dock.o tmp/src/gui/opengl/gl.o tmp/src/gui/color_button.o tmp/src/gui/dwi/renderer.o tmp/src/gui/shview/render_window.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/dialog/dialog.o tmp/src/gui/gui_moc.o tmp/src/gui/gui.o tmp/src/gui/dialog/file.o tmp/src/gui/opengl/lighting.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -Wl,-O1 /usr/lib/x86_64-linux-gnu/libQt5OpenGL.so /usr/lib/x86_64-linux-gnu/libQt5Svg.so /usr/lib/x86_64-linux-gnu/libQt5Widgets.so /usr/lib/x86_64-linux-gnu/libQt5Gui.so /usr/lib/x86_64-linux-gnu/libQt5Core.so /usr/lib/x86_64-linux-gnu/libGL.so -lpthread -o bin/shview g++ tmp/src/dwi/tractography/rng.o tmp/cmd/tsfmult.o tmp/src/dwi/tractography/properties.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfmult g++ tmp/cmd/mrthreshold.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrthreshold g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/cmd/mrinfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrinfo g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/cmd/dwiextract.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwiextract g++ tmp/cmd/dirorder.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder g++ tmp/cmd/dirmerge.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirmerge g++ tmp/src/surface/filter/base.o tmp/src/surface/freesurfer.o tmp/src/connectome/lut.o tmp/cmd/meshconvert.o tmp/src/exec_version.o tmp/src/surface/filter/vertex_transform.o tmp/src/surface/scalar.o tmp/src/surface/mesh_multi.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/surface/polygon.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/mhsampler.cpp -o tmp/src/dwi/tractography/GT/mhsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o (339/505) [LB] bin/5ttedit (340/505) [LB] bin/mrstats (341/505) [LB] bin/warpinit (342/505) [LB] bin/dwi2adc (343/505) [LB] bin/tsfdivide (344/505) [LB] bin/dirflip (345/505) [LB] bin/tckstats (346/505) [LB] bin/voxel2fixel (347/505) [LB] bin/shview (348/505) [LB] bin/tsfmult (349/505) [LB] bin/mrthreshold (350/505) [LB] bin/mrinfo (351/505) [LB] bin/dwiextract (352/505) [LB] bin/dirorder (353/505) [LB] bin/dirmerge (354/505) [LB] bin/meshconvert (355/505) [CC] tmp/src/dwi/tractography/GT/particlegrid.o (356/505) [CC] tmp/src/dwi/tractography/GT/mhsampler.o (357/505) [CC] tmp/src/dwi/tractography/GT/gt.o (358/505) [CC] tmp/src/dwi/tractography/GT/internalenergy.o (359/505) [CC] tmp/src/dwi/tractography/GT/particle.o (360/505) [CC] tmp/cmd/tckglobal.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/fixel/base_fixel.h:30, from src/gui/mrview/tool/fixel/legacy.h:19, from src/gui/mrview/tool/fixel/legacy.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (361/505) [CC] tmp/src/dwi/tractography/GT/externalenergy.o (362/505) [CC] tmp/cmd/tsfsmooth.o (363/505) [CC] tmp/cmd/transformcompose.o (364/505) [CC] tmp/cmd/warpconvert.o (365/505) [CC] tmp/cmd/fod2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/window.h:24, from src/gui/mrview/tool/connectome/shaders.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (366/505) [CC] tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/tool/roi_editor/item.h:25, from src/gui/mrview/tool/roi_editor/item.cpp:19: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (367/505) [CC] tmp/cmd/shbasis.o (368/505) [LB] bin/warpcorrect (369/505) [CC] tmp/cmd/fixel2sh.o (370/505) [LB] bin/vectorstats g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/mode/volume.h:21, from src/gui/mrview/mode/volume.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (371/505) [CC] tmp/cmd/dwi2tensor.o (372/505) [CC] tmp/cmd/tsfthreshold.o (373/505) [CC] tmp/cmd/mrpad.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/volume.h:24, from src/gui/mrview/gui_image.h:22, from src/gui/mrview/gui_image.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcompose.cpp -o tmp/cmd/transformcompose.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shbasis.cpp -o tmp/cmd/shbasis.o g++ tmp/cmd/warpcorrect.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpcorrect g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o g++ tmp/src/stats/permtest.o tmp/src/stats/permstack.o tmp/src/exec_version.o tmp/cmd/vectorstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/vectorstats g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrpad.cpp -o tmp/cmd/mrpad.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o (374/505) [CC] tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractogram.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram.o: In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/mrview/displayable.h:22, from src/gui/mrview/tool/tractography/tractogram.h:20, from src/gui/mrview/tool/tractography/tractogram.cpp:17: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (375/505) [CC] tmp/cmd/fixel2tsf.o (376/505) [CC] tmp/src/registration/transform/initialiser_helpers.o (377/505) [CC] tmp/src/registration/transform/convergence_check.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o: In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/projection.h:21, from src/gui/dwi/render_frame.h:25, from src/gui/mrview/tool/odf/odf.cpp:22: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o g++ tmp/cmd/mrhistmatch.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/properties.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfsmooth.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfsmooth g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/src/exec_version.o tmp/cmd/mrconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/properties.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o tmp/cmd/tsfthreshold.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfthreshold g++ tmp/src/surface/freesurfer.o tmp/src/connectome/lut.o tmp/src/exec_version.o tmp/cmd/voxel2mesh.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/surface/polygon.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2mesh g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o g++ tmp/cmd/mrpad.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrpad g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o g++ tmp/cmd/labelconvert.o tmp/src/connectome/lut.o tmp/src/connectome/connectome.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelconvert g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o g++ tmp/cmd/transformcompose.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcompose g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o (378/505) [CC] tmp/cmd/mraverageheader.o (379/505) [LB] bin/mrhistmatch (380/505) [CC] tmp/src/registration/transform/initialiser.o (381/505) [LB] bin/tsfsmooth (382/505) [CC] tmp/src/registration/transform/rigid.o (383/505) [LB] bin/mrconvert (384/505) [CC] tmp/cmd/sh2amp.o (385/505) [CC] tmp/cmd/mrclusterstats.o (386/505) [LB] bin/tsfthreshold (387/505) [LB] bin/voxel2mesh (388/505) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/roi_editor/roi.h:23, from src/gui/mrview/tool/roi_editor/roi.cpp:18: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ (389/505) [CC] tmp/src/stats/tfce.o (390/505) [CC] tmp/cmd/connectome2tck.o (391/505) [LB] bin/mrpad (392/505) [CC] tmp/src/dwi/tractography/connectome/exemplar.o (393/505) [LB] bin/labelconvert (394/505) [CC] tmp/src/dwi/tractography/connectome/extract.o (395/505) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o (396/505) [LB] bin/transformcompose (397/505) [CC] tmp/src/dwi/tractography/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -std=gnu++11 -Wall -W -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CORE_LIB -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o: In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h: In member function ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator*=(const MR::GUI::GL::mat4&)’: src/gui/opengl/transformation.h:127:31: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 127 | *this = (*this) * a; | ^ src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h: In member function ‘void MR::GUI::ModelViewProjection::set(const MR::GUI::GL::mat4&, const MR::GUI::GL::mat4&)’: src/gui/projection.h:45:16: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 45 | MV = modelview; | ^~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:46:15: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 46 | P = projection; | ^~~~~~~~~~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:47:21: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 47 | MVP = P * MV; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:49:28: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 49 | iMV = GL::inv (MV); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:50:26: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 50 | iP = GL::inv (P); | ^ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ In file included from src/gui/mrview/mode/base.h:23, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/projection.h:51:24: warning: implicitly-declared ‘MR::GUI::GL::mat4& MR::GUI::GL::mat4::operator=(const MR::GUI::GL::mat4&)’ is deprecated [-Wdeprecated-copy] 51 | iMVP = iMV * iP; | ^~ In file included from src/gui/mrview/mode/base.h:22, from src/gui/mrview/tool/connectome/connectome.h:32, from src/gui/mrview/tool/connectome/connectome.cpp:16: src/gui/opengl/transformation.h:69:11: note: because ‘MR::GUI::GL::mat4’ has user-provided ‘MR::GUI::GL::mat4::mat4(const MR::GUI::GL::mat4&)’ 69 | mat4 (const mat4& a) { memcpy (m, a.m, sizeof(m)); } | ^~~~ g++ tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/gui/color_button_moc.o tmp/src/dwi/directions/predefined.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/mrview/mode/base.o tmp/src/gui/opengl/font.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/mrview/tool/view.o tmp/src/gui/mrview/window.o tmp/src/surface/polygon.o tmp/src/gui/projection.o tmp/src/surface/freesurfer.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/adjust_button.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/dwi/gradient.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/src/gui/mrview/icons.o tmp/src/gui/dwi/renderer.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/gui_moc.o tmp/src/gui/gui.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/dialog/file.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/mrview/tool/overlay.o tmp/src/gui/dialog/progress.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/gui/dialog/report_exception.o tmp/src/surface/mesh.o tmp/src/gui/mrview/mode/lightbox.o tmp/cmd/mrview.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/dwi/tractography/properties.o tmp/src/gui/color_button.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/volume.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/gui/dialog/dialog.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/connectome/connectome.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/dialog/dicom.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/connectome/lut.o tmp/src/exec_version.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/surface/mesh_multi.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/opengl/shader.o tmp/src/dwi/tractography/roi.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/lighting_dock.o tmp/src/gui/dialog/opengl.o tmp/src/gui/mrview/mode/ortho.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/cursor.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/gui/opengl/gl.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/gui/mrview/mode/slice.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/shapes/cylinder.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/mrview/colourmap.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/shapes/cube.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/mrview/combo_box_error.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/dwi/tractography/file_base.o tmp/src/gui/mrview/displayable.o tmp/src/surface/scalar.o tmp/src/gui/dialog/list.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/rng.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/opengl/lighting.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -Wl,-O1 /usr/lib/x86_64-linux-gnu/libQt5OpenGL.so /usr/lib/x86_64-linux-gnu/libQt5Svg.so /usr/lib/x86_64-linux-gnu/libQt5Widgets.so /usr/lib/x86_64-linux-gnu/libQt5Gui.so /usr/lib/x86_64-linux-gnu/libQt5Core.so /usr/lib/x86_64-linux-gnu/libGL.so -lpthread -o bin/mrview g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o g++ tmp/src/dwi/directions/predefined.o tmp/src/dwi/directions/mask.o tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/fmls.o tmp/cmd/fod2fixel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2fixel g++ tmp/src/dwi/tractography/algorithms/iFOD2.o tmp/src/dwi/tractography/tracking/shared.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/tracking/method.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/gradient.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/seeding/gmwmi.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/seeding/dynamic.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/ACT/gmwmi.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/seeding/basic.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/seeding.o tmp/src/dwi/tractography/tracking/write_kernel.o tmp/src/dwi/tractography/tracking/tractography.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/tracking/early_exit.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/rng.o tmp/cmd/tckgen.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckgen g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ tmp/cmd/fixel2sh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2sh g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/cmd/tcksample.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksample g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o g++ tmp/src/exec_version.o tmp/cmd/mrdump.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdump g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2colour.cpp -o tmp/cmd/label2colour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cfe.cpp -o tmp/src/stats/cfe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/src/exec_version.o tmp/cmd/sh2response.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2response g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shconv.cpp -o tmp/cmd/shconv.o g++ tmp/cmd/warpconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpconvert g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o g++ tmp/cmd/shbasis.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shbasis g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/GT/particlegrid.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/GT/mhsampler.o tmp/src/dwi/gradient.o tmp/src/exec_version.o tmp/src/dwi/tractography/GT/gt.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/GT/internalenergy.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/GT/particle.o tmp/cmd/tckglobal.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/GT/externalenergy.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckglobal g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/src/exec_version.o tmp/cmd/mrcat.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/src/exec_version.o tmp/cmd/dwi2mask.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2mask g++ tmp/src/dwi/shells.o tmp/cmd/dwi2tensor.o tmp/src/exec_version.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2tensor g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/cmd/fixel2tsf.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2tsf g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckmap.cpp -o tmp/cmd/tckmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o g++ tmp/src/dwi/tractography/properties.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/src/dwi/tractography/connectome/extract.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/rng.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectome2tck g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o g++ tmp/cmd/peaks2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2amp g++ tmp/src/connectome/lut.o tmp/src/connectome/connectome.o tmp/cmd/label2colour.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2colour g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformconvert.cpp -o tmp/cmd/transformconvert.o g++ tmp/cmd/mrcheckerboardmask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcheckerboardmask g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o g++ tmp/cmd/dcminfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcminfo g++ tmp/src/stats/permtest.o tmp/src/dwi/directions/predefined.o tmp/cmd/mrclusterstats.o tmp/src/stats/cluster.o tmp/src/stats/permstack.o tmp/src/stats/tfce.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirsplit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2power.cpp -o tmp/cmd/sh2power.o g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/writer.o tmp/cmd/tckdfc.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckdfc g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/cmd/sh2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2amp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o g++ tmp/src/dwi/shells.o tmp/cmd/amp2response.o tmp/src/exec_version.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2response g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirgen.cpp -o tmp/cmd/dirgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwinormalise.cpp -o tmp/cmd/dwinormalise.o g++ tmp/cmd/connectomestats.o tmp/src/connectome/enhance.o tmp/src/stats/permtest.o tmp/src/stats/permstack.o tmp/src/stats/tfce.o tmp/src/connectome/connectome.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomestats g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o g++ tmp/src/exec_version.o tmp/cmd/transformconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformconvert g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o g++ tmp/cmd/fixelcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcrop g++ tmp/cmd/tckinfo.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/properties.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckinfo g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfinfo.cpp -o tmp/cmd/tsfinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o g++ tmp/src/exec_version.o tmp/cmd/shconv.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shconv g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o g++ tmp/cmd/mtnormalise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mtnormalise g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/linear.cpp -o tmp/src/registration/linear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o g++ tmp/cmd/mrhistogram.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistogram g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o g++ tmp/cmd/sh2power.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckresample.cpp -o tmp/cmd/tckresample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o g++ tmp/cmd/mrdegibbs.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdegibbs g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o g++ tmp/cmd/dirgen.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/properties.o tmp/cmd/tsfinfo.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfinfo g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/x86_64-linux-gnu -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o g++ tmp/src/surface/freesurfer.o tmp/src/connectome/lut.o tmp/src/exec_version.o tmp/cmd/label2mesh.o tmp/src/surface/scalar.o tmp/src/surface/mesh_multi.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/surface/polygon.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh g++ tmp/src/exec_version.o tmp/cmd/warpinvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinvert g++ tmp/cmd/maskdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskdump g++ tmp/src/dwi/tractography/ACT/act.o tmp/cmd/5tt2gmwmi.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2gmwmi g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/properties.o tmp/cmd/tckconvert.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckconvert g++ tmp/src/surface/filter/base.o tmp/src/connectome/lut.o tmp/src/exec_version.o tmp/cmd/meshfilter.o tmp/src/surface/mesh_multi.o tmp/src/surface/mesh.o tmp/src/surface/polygon.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/smooth.o tmp/src/surface/scalar.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshfilter g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/cmd/afdconnectivity.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity g++ tmp/cmd/fixelreorient.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/src/exec_version.o tmp/cmd/dwinormalise.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwinormalise g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/src/exec_version.o tmp/cmd/amp2sh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2sh g++ tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/cmd/tckresample.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckresample g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/SIFT/gradient_sort.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/cmd/tcksift.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/sifter.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift g++ tmp/cmd/fixelcorrespondence.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/cmd/dirstat.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel g++ tmp/cmd/mrfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrfilter g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/exec_version.o tmp/src/dwi/tractography/connectome/matrix.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tck2connectome.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/roi.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2connectome g++ tmp/src/dwi/directions/predefined.o tmp/cmd/dwi2fod.o tmp/src/dwi/gradient.o tmp/src/exec_version.o tmp/src/dwi/shells.o tmp/src/dwi/sdeconv/csd.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2fod g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/stats/permstack.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/stats/permtest.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/cmd/fixelcfestats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/rng.o tmp/src/stats/cfe.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcfestats g++ tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/transform/convergence_check.o tmp/cmd/mraverageheader.o tmp/src/registration/transform/initialiser.o tmp/src/exec_version.o tmp/src/registration/transform/rigid.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader g++ tmp/cmd/mrmetric.o tmp/src/registration/transform/convergence_check.o tmp/src/exec_version.o tmp/src/registration/transform/rigid.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/cmd/mrmath.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath g++ tmp/src/dwi/directions/predefined.o tmp/cmd/mrtransform.o tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrtransform g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/gaussian/mapper.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/cmd/tckmap.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/gradient.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckmap g++ tmp/src/dwi/directions/predefined.o tmp/src/registration/transform/initialiser.o tmp/src/registration/transform/affine.o tmp/src/registration/linear.o tmp/src/exec_version.o tmp/src/registration/transform/rigid.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/transform/convergence_check.o tmp/src/registration/nonlinear.o tmp/cmd/mrregister.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrregister (398/505) [LB] bin/mrview (399/505) [CC] tmp/cmd/amp2sh.o (400/505) [CC] tmp/cmd/tckconvert.o (401/505) [LB] bin/fod2fixel (402/505) [LB] bin/tckgen (403/505) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o (404/505) [LB] bin/fixel2sh (405/505) [CC] tmp/cmd/tcksift.o (406/505) [LB] bin/tcksample (407/505) [CC] tmp/src/dwi/tractography/SIFT/sifter.o (408/505) [LB] bin/mrdump (409/505) [CC] tmp/cmd/tck2fixel.o (410/505) [CC] tmp/cmd/label2colour.o (411/505) [CC] tmp/cmd/fixelcfestats.o (412/505) [CC] tmp/src/stats/cfe.o (413/505) [CC] tmp/cmd/fixelcrop.o (414/505) [LB] bin/sh2response (415/505) [CC] tmp/cmd/shconv.o (416/505) [LB] bin/warpconvert (417/505) [CC] tmp/cmd/mrfilter.o (418/505) [CC] tmp/cmd/mrcheckerboardmask.o (419/505) [LB] bin/shbasis (420/505) [CC] tmp/cmd/peaks2amp.o (421/505) [CC] tmp/cmd/dirsplit.o (422/505) [LB] bin/tckglobal (423/505) [LB] bin/mrcat (424/505) [CC] tmp/cmd/connectomestats.o (425/505) [CC] tmp/src/connectome/enhance.o (426/505) [CC] tmp/cmd/afdconnectivity.o (427/505) [LB] bin/dwi2mask (428/505) [LB] bin/dwi2tensor (429/505) [CC] tmp/cmd/dcminfo.o (430/505) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o (431/505) [LB] bin/fixel2tsf (432/505) [CC] tmp/cmd/tckmap.o (433/505) [CC] tmp/cmd/fixelreorient.o (434/505) [LB] bin/connectome2tck (435/505) [CC] tmp/cmd/mrmetric.o (436/505) [LB] bin/peaks2amp (437/505) [LB] bin/label2colour (438/505) [CC] tmp/cmd/label2mesh.o (439/505) [CC] tmp/cmd/transformconvert.o (440/505) [LB] bin/mrcheckerboardmask (441/505) [CC] tmp/cmd/mrdegibbs.o (442/505) [LB] bin/dcminfo (443/505) [LB] bin/mrclusterstats (444/505) [CC] tmp/cmd/mrhistogram.o (445/505) [LB] bin/dirsplit (446/505) [CC] tmp/cmd/dwi2fod.o (447/505) [CC] tmp/src/dwi/sdeconv/csd.o (448/505) [CC] tmp/cmd/sh2power.o (449/505) [LB] bin/tckdfc (450/505) [CC] tmp/cmd/tckinfo.o (451/505) [LB] bin/sh2amp (452/505) [CC] tmp/cmd/warpinvert.o (453/505) [CC] tmp/cmd/fixelcorrespondence.o (454/505) [LB] bin/amp2response (455/505) [CC] tmp/cmd/dirgen.o (456/505) [CC] tmp/cmd/dwinormalise.o (457/505) [LB] bin/connectomestats (458/505) [CC] tmp/cmd/5tt2gmwmi.o (459/505) [LB] bin/transformconvert (460/505) [CC] tmp/cmd/dirstat.o (461/505) [LB] bin/fixelcrop (462/505) [LB] bin/tckinfo (463/505) [CC] tmp/cmd/tsfinfo.o (464/505) [CC] tmp/cmd/maskdump.o (465/505) [LB] bin/shconv (466/505) [CC] tmp/src/registration/transform/affine.o (467/505) [LB] bin/mtnormalise (468/505) [CC] tmp/src/registration/linear.o (469/505) [CC] tmp/src/registration/nonlinear.o (470/505) [LB] bin/mrhistogram (471/505) [CC] tmp/cmd/mrregister.o (472/505) [LB] bin/sh2power (473/505) [CC] tmp/cmd/tckresample.o (474/505) [CC] tmp/cmd/meshfilter.o (475/505) [LB] bin/mrdegibbs (476/505) [CC] tmp/src/surface/filter/smooth.o (477/505) [LB] bin/dirgen (478/505) [CC] tmp/src/dwi/tractography/connectome/matrix.o (479/505) [LB] bin/tsfinfo (480/505) [CC] tmp/cmd/tck2connectome.o (481/505) [LB] bin/label2mesh (482/505) [LB] bin/warpinvert (483/505) [LB] bin/maskdump (484/505) [LB] bin/5tt2gmwmi (485/505) [LB] bin/tckconvert (486/505) [LB] bin/meshfilter (487/505) [LB] bin/afdconnectivity (488/505) [LB] bin/fixelreorient (489/505) [LB] bin/dwinormalise (490/505) [LB] bin/amp2sh (491/505) [LB] bin/tckresample (492/505) [LB] bin/tcksift (493/505) [LB] bin/fixelcorrespondence (494/505) [LB] bin/dirstat (495/505) [LB] bin/tck2fixel (496/505) [LB] bin/mrfilter (497/505) [LB] bin/tck2connectome (498/505) [LB] bin/dwi2fod (499/505) [LB] bin/fixelcfestats (500/505) [LB] bin/mraverageheader (501/505) [LB] bin/mrmetric (502/505) [LB] bin/mrmath (503/505) [LB] bin/mrtransform (504/505) [LB] bin/tckmap (505/505) [LB] bin/mrregister make[1]: Leaving directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' debian/rules override_dh_auto_test make[1]: Entering directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' ./run_tests || { cat testing.log; exit 1; } logging to "testing.log" OK building testing commands... OK running "5tt2gmwmi"... 1 of 1 passed running "5tt2vis"... 1 of 1 passed running "5ttedit"... 1 of 1 passed running "amp2sh"... 1 of 1 passed running "dirgen"... 4 of 4 passed running "dwi2adc"... 1 of 1 passed running "dwi2fod"... 5 of 5 passed running "dwi2mask"... 1 of 1 passed running "dwi2tensor"... 8 of 8 passed running "dwidenoise"... 6 of 6 passed running "dwiextract"... 2 of 2 passed running "fixel2sh"... 2 of 2 passed running "fixel2tsf"... 1 of 1 passed running "fixel2voxel"... 13 of 13 passed running "fixelconvert"... 2 of 2 passed running "fixelcorrespondence"... 1 of 1 passed running "fixelcrop"... 1 of 1 passed running "fixelreorient"... 1 of 1 passed running "fod2dec"... 12 of 12 passed running "fod2fixel"... 3 of 3 passed running "label2colour"... 3 of 3 passed running "label2mesh"... 2 of 2 passed running "labelconvert"... 4 of 4 passed running "maskfilter"... 9 of 9 passed running "mesh2voxel"... 1 of 1 passed running "meshconvert"... 10 of 10 passed running "mrcalc"... 4 of 4 passed running "mrcat"... 5 of 5 passed running "mrconvert"... 11 of 11 passed running "mrcrop"... 2 of 2 passed running "mrdegibbs"... 1 of 1 passed running "mrfilter"... 15 of 15 passed running "mrhistmatch"... 2 of 2 passed running "mrhistogram"... 0 of 0 passed running "mrmath"... 4 of 4 passed running "mrpad"... 4 of 4 passed running "mrresize"... 8 of 8 passed running "mrstats"... 2 of 2 passed running "mrthreshold"... 9 of 9 passed running "mrtransform"... 10 of 10 passed running "peaks2amp"... 1 of 1 passed running "population_template"... 2 of 2 passed running "sh2amp"... 3 of 3 passed running "sh2peaks"... 2 of 2 passed running "sh2power"... 0 of 0 passed running "sh2response"... 1 of 1 passed running "shbasis"... 4 of 4 passed running "shconv"... 2 of 2 passed running "tck2connectome"... 3 of 3 passed running "tckconvert"... 8 of 8 passed running "tckgen"... 14 of 14 passed running "tckmap"... 4 of 4 passed running "tckresample"... 5 of 5 passed running "tcksample"... 8 of 8 passed running "tcksift"... 1 of 1 passed running "tcksift2"... 1 of 1 passed running "tcktransform"... 1 of 1 passed running "tensor2metric"... 8 of 8 passed running "transformcalc"... 5 of 5 passed running "transformcompose"... 4 of 4 passed running "transformconvert"... 4 of 4 passed running "tsfdivide"... 1 of 1 passed running "tsfmult"... 1 of 1 passed running "tsfsmooth"... 1 of 1 passed running "tsfthreshold"... 2 of 2 passed running "voxel2fixel"... 1 of 1 passed running "warp2metric"... 3 of 3 passed running "warpcorrect"... 1 of 1 passed running "warpinit"... 1 of 1 passed make[1]: Leaving directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' create-stamp debian/debhelper-build-stamp dh_testroot -i dh_prep -i debian/rules override_dh_install make[1]: Entering directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' dh_install # Remove __pycache__ dirs that were created in build time tests find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' dh_installdocs -i dh_installchangelogs -i dh_installman -i dh_perl -i debian/rules override_dh_link make[1]: Entering directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' cp debian/mrtrix3.links.in debian/mrtrix3.links : # Generate symlinks for all the mr* commands for f in debian/mrtrix3/usr/lib/mrtrix3/bin/mrview; do \ bn=$(basename $f); \ echo "usr/lib/mrtrix3/bin/$bn usr/bin/$bn" >> debian/mrtrix3.links; \ echo "/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/$bn.1.gz" >> debian/mrtrix3.links; \ done echo "/usr/share/mrtrix3/matlab /usr/share/matlab/site/m/mrtrix" >> debian/mrtrix3.links echo "/usr/share/mrtrix3/matlab /usr/share/octave/site/m/mrtrix" >> debian/mrtrix3.links dh_link make[1]: Leaving directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' dh_strip_nondeterminism -i debian/rules override_dh_compress make[1]: Entering directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' dh_compress -X.html make[1]: Leaving directory '/build/mrtrix3-hHPmSz/mrtrix3-3.0-rc3+git135-g2b8e7d0c2' dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'mrtrix3-doc' in '../mrtrix3-doc_3.0~rc3+git135-g2b8e7d0c2-5_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../mrtrix3_3.0~rc3+git135-g2b8e7d0c2-5_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/mrtrix3-hHPmSz /tmp/mrtrix3-3.0~rc3+git135-g2b8e7d0c2-5qaeubwkw I: cleaning package lists and apt cache... W: deleting files in /tmp: mrtrix-tmp-R8rN03.mif I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.nknwPQTe0k... I: success in 17111.6504 seconds md5: mrtrix3-doc_3.0~rc3+git135-g2b8e7d0c2-5_all.deb: OK sha1: mrtrix3-doc_3.0~rc3+git135-g2b8e7d0c2-5_all.deb: OK sha256: mrtrix3-doc_3.0~rc3+git135-g2b8e7d0c2-5_all.deb: OK Checksums: OK