Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/mrtrix3/mrtrix3_3.0.3-2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/mrtrix3-3.0.3-2bp1pinva/mrtrix3_3.0.3-2_amd64.buildinfo Get source package info: mrtrix3=3.0.3-2 Source URL: http://snapshot.notset.fr/mr/package/mrtrix3/3.0.3-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 adwaita-icon-theme=41.0-1 autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5+b1 bc=1.07.1-3+b1 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-13 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.5-1 dh-autoreconf=20 dh-python=5.20211217 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:11.2.0-2 g++-11=11.2.0-13 gcc=4:11.2.0-2 gcc-11=11.2.0-13 gcc-11-base=11.2.0-13 gettext=0.21-4 gettext-base=0.21-4 gfortran=4:11.2.0-2 gfortran-11=11.2.0-13 gir1.2-atk-1.0=2.36.0-3 gir1.2-freedesktop=1.70.0-2 gir1.2-gdkpixbuf-2.0=2.42.6+dfsg-2 gir1.2-glib-2.0=1.70.0-2 gir1.2-gtk-2.0=2.24.33-2 gir1.2-harfbuzz-0.0=2.7.4-1 gir1.2-pango-1.0=1.48.10+ds1-1 grep=3.7-1 groff-base=1.22.4-7 gtk-update-icon-cache=3.24.30-4 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hicolor-icon-theme=0.17-2 hostname=3.23 ibverbs-providers=38.0-1 icu-devtools=67.1-7 imagemagick=8:6.9.11.60+dfsg-1.3 imagemagick-6-common=8:6.9.11.60+dfsg-1.3 imagemagick-6.q16=8:6.9.11.60+dfsg-1.3 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libamd2=1:5.10.1+dfsg-4 libaom3=3.2.0-2 libarchive-zip-perl=1.68-1 libarpack2=3.8.0-1 libasan6=11.2.0-13 libasound2=1.2.5.1-1 libasound2-data=1.2.5.1-1 libatk1.0-0=2.36.0-3 libatk1.0-data=2.36.0-3 libatk1.0-dev=2.36.0-3 libatkmm-1.6-1v5=2.28.2-1 libatkmm-1.6-dev=2.28.2-1 libatomic1=11.2.0-13 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbinutils=2.37-10 libblas-dev=3.10.0-2 libblas3=3.10.0-2 libblkid-dev=2.37.2-4 libblkid1=2.37.2-4 libbrotli-dev=1.0.9-2+b3 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbtf1=1:5.10.1+dfsg-4 libbz2-1.0=1.0.8-5 libc-bin=2.33-1 libc-dev-bin=2.33-1 libc6=2.33-1 libc6-dev=2.33-1 libcairo-gobject2=1.16.0-5 libcairo-script-interpreter2=1.16.0-5 libcairo2=1.16.0-5 libcairo2-dev=1.16.0-5 libcairomm-1.0-1v5=1.12.2-4 libcairomm-1.0-dev=1.12.2-4 libcamd2=1:5.10.1+dfsg-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcbor0.8=0.8.0-2 libcc1-0=11.2.0-13 libccolamd2=1:5.10.1+dfsg-4 libcholmod3=1:5.10.1+dfsg-4 libcolamd2=1:5.10.1+dfsg-4 libcom-err2=1.46.4-1 libcombblas1.16.0=1.6.2-6 libcrypt-dev=1:4.4.27-1 libcrypt1=1:4.4.27-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcups2=2.3.3op2-7 libcurl3-gnutls=7.79.1-2 libcurl4=7.79.1-2 libcurl4-openssl-dev=7.79.1-2 libcxsparse3=1:5.10.1+dfsg-4 libdatrie-dev=0.2.13-2 libdatrie1=0.2.13-2 libdav1d5=0.9.2-1+b1 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-3 libde265-0=1.0.8-1 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdeflate-dev=1.8-1 libdeflate0=1.8-1 libdouble-conversion3=3.1.5-7 libdpkg-perl=1.21.1 libdrm-amdgpu1=2.4.109-2 libdrm-common=2.4.109-2 libdrm-intel1=2.4.109-2 libdrm-nouveau2=2.4.109-2 libdrm-radeon1=2.4.109-2 libdrm2=2.4.109-2 libedit2=3.1-20210910-1 libegl-dev=1.3.4-2+b1 libegl-mesa0=21.2.6-1 libegl1=1.3.4-2+b1 libeigen3-dev=3.4.0-2 libelf1=0.186-1 libevdev2=1.12.0+dfsg-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.4.1-3 libexpat1-dev=2.4.1-3 libfabric1=1.11.0-3 libffi-dev=3.4.2-3 libffi8=3.4.2-3 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-mpi3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfido2-1=1.9.0-1 libfile-stripnondeterminism-perl=1.13.0-1 libflac8=1.3.3-2 libfltk-gl1.3=1.3.5-3 libfltk1.3=1.3.5-3 libfontconfig-dev=2.13.1-4.2 libfontconfig1=2.13.1-4.2 libfontconfig1-dev=2.13.1-4.2 libfreetype-dev=2.11.0+dfsg-1 libfreetype6=2.11.0+dfsg-1 libfreetype6-dev=2.11.0+dfsg-1 libfribidi-dev=1.0.8-2 libfribidi0=1.0.8-2 libgbm1=21.2.6-1 libgcc-11-dev=11.2.0-13 libgcc-s1=11.2.0-13 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgdk-pixbuf-2.0-0=2.42.6+dfsg-2 libgdk-pixbuf-2.0-dev=2.42.6+dfsg-2 libgdk-pixbuf2.0-bin=2.42.6+dfsg-2 libgdk-pixbuf2.0-common=2.42.6+dfsg-2 libgfortran-11-dev=11.2.0-13 libgfortran5=11.2.0-13 libgirepository-1.0-1=1.70.0-2 libgl-dev=1.3.4-2+b1 libgl1=1.3.4-2+b1 libgl1-mesa-dev=21.2.6-1 libgl1-mesa-dri=21.2.6-1 libgl2ps1.4=1.4.2+dfsg1-2 libglapi-mesa=21.2.6-1 libgles-dev=1.3.4-2+b1 libgles1=1.3.4-2+b1 libgles2=1.3.4-2+b1 libglib2.0-0=2.70.2-1 libglib2.0-bin=2.70.2-1 libglib2.0-data=2.70.2-1 libglib2.0-dev=2.70.2-1 libglib2.0-dev-bin=2.70.2-1 libglibmm-2.4-1v5=2.66.2-1 libglibmm-2.4-dev=2.66.2-1 libglpk40=5.0-1 libglu1-mesa=9.0.1-1 libglu1-mesa-dev=9.0.1-1 libglvnd-core-dev=1.3.4-2+b1 libglvnd-dev=1.3.4-2+b1 libglvnd0=1.3.4-2+b1 libglx-dev=1.3.4-2+b1 libglx-mesa0=21.2.6-1 libglx0=1.3.4-2+b1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-4 libgomp1=11.2.0-13 libgpg-error0=1.43-1 libgraphicsmagick++-q16-12=1.4+really1.3.37-1 libgraphicsmagick-q16-3=1.4+really1.3.37-1 libgraphite2-3=1.3.14-1 libgraphite2-dev=1.3.14-1 libgsl-dev=2.7.1+dfsg-3 libgsl27=2.7.1+dfsg-3 libgslcblas0=2.7.1+dfsg-3 libgssapi-krb5-2=1.18.3-7 libgtk2.0-0=2.24.33-2 libgtk2.0-common=2.24.33-2 libgtk2.0-dev=2.24.33-2 libgtkglext1=1.2.0-11 libgtkglext1-dev=1.2.0-11 libgtkmm-2.4-1v5=1:2.24.5-4+b1 libgtkmm-2.4-dev=1:2.24.5-4+b1 libgudev-1.0-0=237-2 libharfbuzz-dev=2.7.4-1 libharfbuzz-gobject0=2.7.4-1 libharfbuzz-icu0=2.7.4-1 libharfbuzz0b=2.7.4-1 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhdf5-openmpi-103-1=1.10.7+repack-4 libheif1=1.12.0-2+b3 libhogweed6=3.7.3-1 libhwloc-plugins=2.7.0-1 libhwloc15=2.7.0-1 libhypre=2.22.1-3 libibverbs1=38.0-1 libice-dev=2:1.0.10-1 libice6=2:1.0.10-1 libicu-dev=67.1-7 libicu67=67.1-7 libidn2-0=2.3.2-2 libinput-bin=1.19.2-1 libinput10=1.19.2-1 libisl23=0.24-2 libitm1=11.2.0-13 libjack-jackd2-0=1.9.19~dfsg-2 libjbig-dev=2.1-3.1+b2 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libklu1=1:5.10.1+dfsg-4 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack-dev=3.10.0-2 liblapack3=3.10.0-2 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.59+dfsg-1 libllvm12=1:12.0.1-17+b1 liblqr-1-0=0.4.2-2.1 liblsan0=11.2.0-13 libltdl7=2.4.6-15 liblz4-1=1.9.3-2 liblzma-dev=5.2.5-2 liblzma5=5.2.5-2 liblzo2-2=2.10-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmagickcore-6.q16-6=8:6.9.11.60+dfsg-1.3 libmagickwand-6.q16-6=8:6.9.11.60+dfsg-1.3 libmd0=1.0.4-1 libmd4c0=0.4.8-1 libmetis5=5.1.0.dfsg-7 libmount-dev=2.37.2-4 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libmtdev1=1.1.6-1 libmumps-5.4=5.4.1-2 libncurses-dev=6.3-1 libncurses6=6.3-1 libncursesw6=6.3-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnl-3-200=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma1=2.0.14-3 liboctave-dev=6.2.0-1 liboctave8=6.2.0-1 libogg0=1.3.4-0.1 libopengl-dev=1.3.4-2+b1 libopengl0=1.3.4-2+b1 libopenjp2-7=2.4.0-3 libopenmpi3=4.1.2-1 libopus0=1.3.1-0.1 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpango-1.0-0=1.48.10+ds1-1 libpango1.0-dev=1.48.10+ds1-1 libpangocairo-1.0-0=1.48.10+ds1-1 libpangoft2-1.0-0=1.48.10+ds1-1 libpangomm-1.4-1v5=2.46.1-1 libpangomm-1.4-dev=2.46.1-1 libpangoxft-1.0-0=1.48.10+ds1-1 libpciaccess0=0.16-1 libpcre16-3=2:8.39-13 libpcre2-16-0=10.39-3 libpcre2-32-0=10.39-3 libpcre2-8-0=10.39-3 libpcre2-dev=10.39-3 libpcre2-posix3=10.39-3 libpcre3=2:8.39-13 libpcre3-dev=2:8.39-13 libpcre32-3=2:8.39-13 libpcrecpp0v5=2:8.39-13 libperl5.32=5.32.1-6 libpetsc-real3.15=3.15.5+dfsg1-1 libpipeline1=1.5.4-1 libpixman-1-0=0.40.0-1 libpixman-1-dev=0.40.0-1 libpmix2=4.1.1~rc6-1 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libportaudio2=19.6.0-1.1 libpsl5=0.21.0-1.2 libpsm-infinipath1=3.3+20.604758e7-6.1 libpsm2-2=11.2.185-1 libpthread-stubs0-dev=0.4-1 libptscotch-6.1=6.1.1-2 libpython3-stdlib=3.9.8-1 libpython3.9-minimal=3.9.9-2 libpython3.9-stdlib=3.9.9-2 libqhull8.0=2020.2-4 libqrupdate1=1.1.2-4 libqscintilla2-qt5-15=2.11.6+dfsg-4+b1 libqscintilla2-qt5-l10n=2.11.6+dfsg-4 libqt5concurrent5=5.15.2+dfsg-14 libqt5core5a=5.15.2+dfsg-14 libqt5dbus5=5.15.2+dfsg-14 libqt5gui5=5.15.2+dfsg-14 libqt5help5=5.15.2-5+b1 libqt5network5=5.15.2+dfsg-14 libqt5opengl5=5.15.2+dfsg-14 libqt5opengl5-dev=5.15.2+dfsg-14 libqt5printsupport5=5.15.2+dfsg-14 libqt5sql5=5.15.2+dfsg-14 libqt5svg5=5.15.2-3 libqt5svg5-dev=5.15.2-3 libqt5test5=5.15.2+dfsg-14 libqt5widgets5=5.15.2+dfsg-14 libqt5xml5=5.15.2+dfsg-14 libquadmath0=11.2.0-13 librdmacm1=38.0-1 libreadline-dev=8.1-2 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsamplerate0=0.2.2-1 libsasl2-2=2.1.27+dfsg2-2 libsasl2-modules-db=2.1.27+dfsg2-2 libscalapack-openmpi2.1=2.1.0-4 libscotch-6.1=6.1.1-2 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libselinux1-dev=3.3-1+b1 libsemanage-common=3.3-1 libsemanage2=3.3-1+b1 libsensors-config=1:3.6.0-7 libsensors5=1:3.6.0-7 libsepol-dev=3.3-1 libsepol2=3.3-1 libsigc++-2.0-0v5=2.10.4-2 libsigc++-2.0-dev=2.10.4-2 libsigsegv2=2.13-1 libsm-dev=2:1.2.3-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-4 libsndfile1=1.0.31-2 libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl-dev=1.1.1l-1 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-13 libstdc++6=11.2.0-13 libsub-override-perl=0.09-2 libsuitesparseconfig5=1:5.10.1+dfsg-4 libsundials-ida4=5.8.0+dfsg-1 libsundials-nvecparallel-petsc4=5.8.0+dfsg-1 libsundials-nvecserial4=5.8.0+dfsg-1 libsundials-sunlinsol2=5.8.0+dfsg-1 libsundials-sunmatrix2=5.8.0+dfsg-1 libsuperlu-dist7=7.2.0+dfsg1-2 libsuperlu5=5.3.0+dfsg1-2 libsystemd0=249.7-1 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libtext-unidecode-perl=1.30-1 libthai-data=0.1.29-1 libthai-dev=0.1.29-1 libthai0=0.1.29-1 libtiff-dev=4.3.0-2 libtiff5=4.3.0-2 libtiffxx5=4.3.0-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtrilinos-amesos12=12.18.1-2+b1 libtrilinos-aztecoo12=12.18.1-2+b1 libtrilinos-epetra12=12.18.1-2+b1 libtrilinos-epetraext12=12.18.1-2+b1 libtrilinos-galeri12=12.18.1-2+b1 libtrilinos-ifpack12=12.18.1-2+b1 libtrilinos-kokkos12=12.18.1-2+b1 libtrilinos-ml12=12.18.1-2+b1 libtrilinos-teuchos12=12.18.1-2+b1 libtrilinos-trilinosss12=12.18.1-2+b1 libtrilinos-triutils12=12.18.1-2+b1 libtrilinos-zoltan12=12.18.1-2+b1 libtsan0=11.2.0-13 libubsan1=11.2.0-13 libuchardet0=0.0.7-1 libucx0=1.12.0-1 libudev1=249.7-1 libumfpack5=1:5.10.1+dfsg-4 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libvorbis0a=1.3.7-1 libvorbisenc2=1.3.7-1 libvulkan-dev=1.2.189.0-2 libvulkan1=1.2.189.0-2 libwacom-common=1.12-1 libwacom2=1.12-1 libwayland-client0=1.19.0-2+b1 libwayland-server0=1.19.0-2+b1 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libwmf0.2-7=0.2.8.4-17+b1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libx11-dev=2:1.7.2-2+b1 libx11-xcb1=2:1.7.2-2+b1 libx265-199=3.5-2 libxau-dev=1:1.0.9-1 libxau6=1:1.0.9-1 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-icccm4=0.4.1-1.1 libxcb-image0=0.4.0-1+b3 libxcb-keysyms1=0.4.0-1+b2 libxcb-present0=1.14-3 libxcb-randr0=1.14-3 libxcb-render-util0=0.3.9-1+b1 libxcb-render0=1.14-3 libxcb-render0-dev=1.14-3 libxcb-shape0=1.14-3 libxcb-shm0=1.14-3 libxcb-shm0-dev=1.14-3 libxcb-sync1=1.14-3 libxcb-util1=0.4.0-1+b1 libxcb-xfixes0=1.14-3 libxcb-xinerama0=1.14-3 libxcb-xinput0=1.14-3 libxcb-xkb1=1.14-3 libxcb1=1.14-3 libxcb1-dev=1.14-3 libxcomposite-dev=1:0.4.5-1 libxcomposite1=1:0.4.5-1 libxcursor-dev=1:1.2.0-2 libxcursor1=1:1.2.0-2 libxdamage-dev=1:1.1.5-2 libxdamage1=1:1.1.5-2 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext-dev=2:1.3.4-1 libxext6=2:1.3.4-1 libxfixes-dev=1:5.0.3-2 libxfixes3=1:5.0.3-2 libxft-dev=2.3.2-2 libxft2=2.3.2-2 libxi-dev=2:1.8-1 libxi6=2:1.8-1 libxinerama-dev=2:1.1.4-2 libxinerama1=2:1.1.4-2 libxkbcommon-x11-0=1.3.1-1 libxkbcommon0=1.3.1-1 libxml-libxml-perl=2.0134+dfsg-2+b1 libxml-namespacesupport-perl=1.12-1.1 libxml-sax-base-perl=1.09-1.1 libxml-sax-perl=1.02+dfsg-3 libxml2=2.9.12+dfsg-5+b1 libxml2-utils=2.9.12+dfsg-5+b1 libxmu-dev=2:1.1.2-2+b3 libxmu-headers=2:1.1.2-2 libxmu6=2:1.1.2-2+b3 libxnvctrl0=470.82.00-1 libxrandr-dev=2:1.5.2-1 libxrandr2=2:1.5.2-1 libxrender-dev=1:0.9.10-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxt-dev=1:1.2.0-1 libxt6=1:1.2.0-1 libxxf86vm1=1:1.1.4-1+b2 libyaml-0-2=0.2.2-1 libz3-4=4.8.12-1+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-2 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 matlab-support-dev=0.0.23 mawk=1.3.4.20200120-2 media-types=4.0.0 mpi-default-bin=1.14 ncurses-base=6.3-1 ncurses-bin=6.3-1 ocl-icd-libopencl1=2.2.14-3 octave=6.2.0-1 octave-common=6.2.0-1 openmpi-bin=4.1.2-1 openmpi-common=4.1.2-1 openssh-client=1:8.7p1-2 pango1.0-tools=1.48.10+ds1-1 passwd=1:4.8.1-2 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 python3=3.9.8-1 python3-distutils=3.9.9-3 python3-lib2to3=3.9.9-3 python3-minimal=3.9.8-1 python3.9=3.9.9-2 python3.9-minimal=3.9.9-2 qt5-qmake=5.15.2+dfsg-14 qt5-qmake-bin=5.15.2+dfsg-14 qtbase5-dev=5.15.2+dfsg-14 qtbase5-dev-tools=5.15.2+dfsg-14 qtchooser=66-2 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 shared-mime-info=2.0-1 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 tex-common=6.17 texinfo=6.8-3 tzdata=2021e-1 ucf=3.0043 util-linux=2.37.2-4 uuid-dev=2.37.2-4 x11-common=1:7.7+23 x11proto-dev=2021.5-1 xkb-data=2.33-1 xorg-sgml-doctools=1:1.11-1.1 xtrans-dev=1.4.0-1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211228T091540Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211228T091540Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211223T212845Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d mrtrix3=3.0.3-2 && mkdir -p /build/mrtrix3-xIM3JB && dpkg-source --no-check -x /*.dsc /build/mrtrix3-xIM3JB/mrtrix3-3.0.3 && chown -R builduser:builduser /build/mrtrix3-xIM3JB" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mrtrix3-xIM3JB/mrtrix3-3.0.3 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1640185087" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/mrtrix3-xIM3JB /tmp/mrtrix3-3.0.3-2bp1pinva bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211223T212845Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.Rwv0S_bJIh as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.Rwv0S_bJIh Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211223T212845Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211223T212845Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1033 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4680 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-1) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211228T091540Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211228T091540Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211223T212845Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.Rwv0S_bJIh Get:1 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211223T212845Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main Sources [11.8 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.1 MB in 20s (1165 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.Rwv0S_bJIh I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d mrtrix3=3.0.3-2 && mkdir -p /build/mrtrix3-xIM3JB && dpkg-source --no-check -x /*.dsc /build/mrtrix3-xIM3JB/mrtrix3-3.0.3 && chown -R builduser:builduser /build/mrtrix3-xIM3JB"' exec /tmp/mmdebstrap.Rwv0S_bJIh Reading package lists... NOTICE: 'mrtrix3' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mrtrix3.git Please use: git clone https://salsa.debian.org/med-team/mrtrix3.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2579 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main mrtrix3 3.0.3-2 (dsc) [2263 B] Get:2 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main mrtrix3 3.0.3-2 (tar) [2546 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main mrtrix3 3.0.3-2 (diff) [30.1 kB] Fetched 2579 kB in 2s (1139 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'mrtrix3_3.0.3-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting mrtrix3 in /build/mrtrix3-xIM3JB/mrtrix3-3.0.3 dpkg-source: info: unpacking mrtrix3_3.0.3.orig.tar.gz dpkg-source: info: unpacking mrtrix3_3.0.3-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian_build_cfg dpkg-source: info: applying python3.patch dpkg-source: info: applying mrtrix_version.patch dpkg-source: info: applying eigen-3.4.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mrtrix3-xIM3JB/mrtrix3-3.0.3 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1640185087" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.Rwv0S_bJIh dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' [ -f config ] && python3 ./build clean || true find . -name '*.pyc' -delete rm clean \ config configure.log build.log \ core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp \ icons/mrview.qrc icons/shview.qrc rm: cannot remove 'clean': No such file or directory rm: cannot remove 'config': No such file or directory rm: cannot remove 'configure.log': No such file or directory rm: cannot remove 'build.log': No such file or directory rm: cannot remove 'core/version.cpp': No such file or directory rm: cannot remove 'lib/mrtrix3/_version.py': No such file or directory rm: cannot remove 'src/exec_version.cpp': No such file or directory rm: cannot remove 'icons/mrview.qrc': No such file or directory rm: cannot remove 'icons/shview.qrc': No such file or directory make[1]: [debian/rules:73: override_dh_clean] Error 1 (ignored) dh_clean make[1]: Leaving directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' ./configure -openmp # -debug MRtrix build type requested: release version with openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (Debian 11.2.0-13) 11.2.0 Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.2.11 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.3.0 Checking for PNG library: Header: 1.6.37; library: 1.6.37 Checking for FFTW library: fftw-3.3.8-sse2-avx Checking for OpenMP support: ok Checking for Qt moc: moc (version 5.15.2) Checking for Qt qmake: qmake (version 5.15.2) Checking for Qt rcc: rcc (version 5.15.2) Checking for Qt: 5.15.2 writing configuration to file './config': ok make[1]: Leaving directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' debian/rules override_dh_auto_build make[1]: Entering directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' ./build -verbose active config is default reading configuration from "config"... is_likely_text: bin/5ttgen: starts with shebang is_likely_text: bin/blend: starts with shebang is_likely_text: bin/convert_bruker: starts with shebang is_likely_text: bin/dwi2response: starts with shebang is_likely_text: bin/dwibiascorrect: starts with shebang is_likely_text: bin/dwicat: starts with shebang is_likely_text: bin/dwifslpreproc: starts with shebang is_likely_text: bin/dwigradcheck: starts with shebang is_likely_text: bin/dwinormalise: starts with shebang is_likely_text: bin/dwishellmath: starts with shebang is_likely_text: bin/for_each: starts with shebang is_likely_text: bin/gen_scheme: starts with shebang is_likely_text: bin/labelsgmfix: starts with shebang is_likely_text: bin/mrtrix3.py: utf-8 encoded is_likely_text: bin/mrtrix_cleanup: starts with shebang is_likely_text: bin/notfound: starts with shebang is_likely_text: bin/population_template: starts with shebang is_likely_text: bin/responsemean: starts with shebang getting MRtrix version from folder "."... fetching version information from "MRTRIX_BASE_VERSION" in "./core/version.h": 3.0.3 Using MRtrix version "3.0.3" version file "./core/version.cpp" is out of date - updating version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... building targets: bin/5tt2gmwmi bin/5tt2vis bin/5ttcheck bin/5ttedit bin/afdconnectivity bin/amp2sh bin/connectome2tck bin/connectomeedit bin/connectomestats bin/dcmedit bin/dcminfo bin/dirflip bin/dirgen bin/dirmerge bin/dirorder bin/dirsplit bin/dirstat bin/dwi2adc bin/dwi2fod bin/dwi2mask bin/dwi2tensor bin/dwidenoise bin/dwiextract bin/fixel2peaks bin/fixel2sh bin/mrtransform bin/fixelcfestats bin/fixelconnectivity bin/fixelconvert bin/fixelcorrespondence bin/fixelcrop bin/fixelfilter bin/fixelreorient bin/fod2dec bin/fod2fixel bin/label2colour bin/label2mesh bin/mtnormalise bin/maskdump bin/maskfilter bin/mesh2voxel bin/meshconvert bin/meshfilter bin/mraverageheader bin/mrcalc bin/mrcat bin/mrcheckerboardmask bin/mrclusterstats bin/warpinit bin/tck2fixel bin/mrdump bin/mrfilter bin/mrgrid bin/mrhistmatch bin/mrhistogram bin/mrinfo bin/mrmath bin/mrmetric bin/mrstats bin/mrthreshold bin/mrview bin/peaks2amp bin/sh2amp bin/sh2peaks bin/sh2power bin/sh2response bin/shbasis bin/shconv bin/shview bin/tck2connectome bin/tckconvert bin/tckdfc bin/tckedit bin/tckgen bin/tckglobal bin/tckinfo bin/tckmap bin/tckresample bin/tcksample bin/tcksift bin/tcksift2 bin/tckstats bin/tcktransform bin/tensor2metric bin/transformcalc bin/transformconvert bin/tsfdivide bin/tsfinfo bin/tsfmult bin/tsfsmooth bin/tsfthreshold bin/tsfvalidate bin/vectorstats bin/voxel2fixel bin/voxel2mesh bin/warp2metric bin/warpconvert bin/warpcorrect bin/warpinvert bin/transformcompose bin/amp2response bin/fixel2tsf bin/fixel2voxel bin/labelconvert bin/labelstats bin/mrcentroid bin/mrcolour bin/mrconvert bin/mrdegibbs bin/mredit bin/mrregister bin/peaks2fixel TODO list contains 546 items launching 10 threads ( 1/546) [CC] tmp/cmd/5tt2gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o ( 2/546) [CC] tmp/core/image_io/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/base.cpp -o tmp/core/image_io/base.o ( 3/546) [CC] tmp/core/image_io/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/tiff.cpp -o tmp/core/image_io/tiff.o ( 4/546) [CC] tmp/core/formats/mri.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mri.cpp -o tmp/core/formats/mri.o ( 5/546) [CC] tmp/core/formats/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter 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-ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/name_parser.cpp -o tmp/core/file/name_parser.o ( 8/546) [CC] tmp/core/math/stats/fwe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc 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tmp/core/math/erfinv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/erfinv.cpp -o tmp/core/math/erfinv.o ( 13/546) [CC] tmp/core/file/dicom/quick_scan.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter 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-ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mrtrix_sparse_legacy.cpp -o tmp/core/formats/mrtrix_sparse_legacy.o ( 16/546) [CC] tmp/core/file/ofstream.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp 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tmp/core/formats/mrtrix_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o ( 21/546) [CC] tmp/core/formats/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mgh.cpp -o tmp/core/formats/mgh.o ( 22/546) [CC] tmp/core/progressbar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/progressbar.cpp -o tmp/core/progressbar.o ( 23/546) [CC] tmp/core/file/dicom/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/mapper.cpp -o tmp/core/file/dicom/mapper.o ( 24/546) [CC] tmp/core/datatype.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc 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-DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/nifti2.cpp -o tmp/core/formats/nifti2.o ( 27/546) [CC] tmp/core/phase_encoding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/phase_encoding.cpp -o tmp/core/phase_encoding.o ( 28/546) [CC] tmp/core/image_io/scratch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/scratch.cpp -o tmp/core/image_io/scratch.o ( 29/546) [CC] tmp/core/file/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/tiff.cpp -o tmp/core/file/tiff.o ( 30/546) [CC] tmp/core/axes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/axes.cpp -o tmp/core/axes.o ( 31/546) [CC] tmp/core/formats/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/dicom.cpp -o tmp/core/formats/dicom.o ( 32/546) [CC] tmp/core/formats/mrtrix_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mrtrix_utils.cpp -o tmp/core/formats/mrtrix_utils.o ( 33/546) [CC] tmp/core/file/mmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/mmap.cpp -o tmp/core/file/mmap.o ( 34/546) [CC] tmp/core/dwi/gradient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/dwi/gradient.cpp -o tmp/core/dwi/gradient.o ( 35/546) [CC] tmp/core/math/zstatistic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/zstatistic.cpp -o tmp/core/math/zstatistic.o ( 36/546) [CC] tmp/core/header.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/header.cpp -o tmp/core/header.o ( 37/546) [CC] tmp/core/image_io/sparse.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/sparse.cpp -o tmp/core/image_io/sparse.o ( 38/546) [CC] tmp/core/formats/mgz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o ( 39/546) [CC] tmp/core/stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/stats.cpp -o tmp/core/stats.o ( 40/546) [CC] tmp/core/image_io/fetch_store.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/fetch_store.cpp -o tmp/core/image_io/fetch_store.o ( 41/546) [CC] tmp/core/formats/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/png.cpp -o tmp/core/formats/png.o ( 42/546) [CC] tmp/core/image_io/gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core 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-DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/tiff.cpp -o tmp/core/formats/tiff.o ( 45/546) [CC] tmp/core/signal_handler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/signal_handler.cpp -o tmp/core/signal_handler.o ( 46/546) [CC] tmp/core/math/average_space.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/average_space.cpp -o tmp/core/math/average_space.o ( 47/546) [CC] tmp/core/app.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter 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tmp/core/math/betainc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/betainc.cpp -o tmp/core/math/betainc.o ( 52/546) [CC] tmp/core/file/dicom/dict.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o ( 53/546) [CC] tmp/core/formats/xds.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/xds.cpp -o tmp/core/formats/xds.o ( 54/546) [CC] tmp/core/file/dicom/select_cmdline.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/select_cmdline.cpp -o tmp/core/file/dicom/select_cmdline.o ( 55/546) [CC] tmp/core/version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 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-fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/series.cpp -o tmp/core/file/dicom/series.o ( 71/546) [CC] tmp/core/exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 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-fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o ( 87/546) [CC] tmp/src/dwi/tractography/rng.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter 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version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o ( 92/546) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu 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tmp/src/dwi/tractography/SIFT/proc_mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o ( 95/546) [CC] tmp/src/dwi/directions/set.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o ( 96/546) [CC] tmp/src/dwi/tractography/resampling/resampling.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/resampling.cpp -o tmp/src/dwi/tractography/resampling/resampling.o ( 97/546) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o ( 98/546) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o ( 99/546) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o (100/546) [CC] tmp/src/dwi/tractography/file_base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o (101/546) [CC] tmp/src/dwi/fmls.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o (104/546) [CC] tmp/src/dwi/directions/mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o (105/546) [CC] tmp/src/dwi/tractography/resampling/upsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/upsampler.cpp -o 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-DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/predefined.cpp -o tmp/src/dwi/directions/predefined.o (108/546) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o (109/546) [CC] tmp/src/dwi/tractography/resampling/arc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/arc.cpp -o tmp/src/dwi/tractography/resampling/arc.o (110/546) [CC] tmp/src/dwi/tractography/resampling/downsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o (113/546) [CC] tmp/cmd/connectome2tck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o (116/546) [CC] tmp/src/dwi/tractography/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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tmp/src/dwi/tractography/weights.o (118/546) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o (119/546) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o (120/546) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o (121/546) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o (122/546) [CC] tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o (123/546) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o (124/546) [CC] tmp/cmd/dcmedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat 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g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o (127/546) [CC] tmp/src/dwi/directions/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter 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tmp/cmd/dirsplit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o (132/546) [CC] tmp/cmd/dirstat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o (133/546) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o (134/546) [CC] tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o (135/546) [CC] tmp/src/dwi/sdeconv/msmt_csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/sdeconv/msmt_csd.cpp -o 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-idirafter /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o (141/546) [CC] tmp/cmd/fixel2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2peaks.cpp -o tmp/cmd/fixel2peaks.o (142/546) [CC] tmp/cmd/fixel2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o (143/546) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o (144/546) [CC] tmp/src/registration/multi_contrast.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/multi_contrast.cpp -o tmp/src/registration/multi_contrast.o (145/546) [CC] tmp/src/fixel/index_remapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/index_remapper.cpp -o tmp/src/fixel/index_remapper.o (146/546) [CC] tmp/src/fixel/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/matrix.cpp -o tmp/src/fixel/matrix.o (147/546) [CC] tmp/src/stats/cfe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cfe.cpp -o tmp/src/stats/cfe.o (148/546) [CC] tmp/src/fixel/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/filter/smooth.cpp -o tmp/src/fixel/filter/smooth.o (149/546) [LD] lib/libmrtrix.so g++ tmp/core/image_io/base.o tmp/core/image_io/tiff.o tmp/core/formats/mri.o tmp/core/formats/pipe.o tmp/core/dwi/shells.o tmp/core/file/name_parser.o tmp/core/math/stats/fwe.o tmp/core/formats/par.o tmp/core/filter/connected_components.o tmp/core/image_io/default.o tmp/core/math/erfinv.o tmp/core/file/dicom/quick_scan.o tmp/core/file/mgh.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/file/ofstream.o tmp/core/file/dicom/element.o tmp/core/file/nifti_utils.o tmp/core/image_io/pipe.o tmp/core/formats/mrtrix_gz.o tmp/core/formats/mgh.o tmp/core/progressbar.o tmp/core/file/dicom/mapper.o tmp/core/datatype.o tmp/core/math/SH.o tmp/core/formats/nifti2.o tmp/core/phase_encoding.o tmp/core/image_io/scratch.o tmp/core/file/tiff.o tmp/core/axes.o tmp/core/formats/dicom.o tmp/core/formats/mrtrix_utils.o tmp/core/file/mmap.o tmp/core/dwi/gradient.o tmp/core/math/zstatistic.o tmp/core/header.o tmp/core/image_io/sparse.o tmp/core/formats/mgz.o tmp/core/stats.o tmp/core/image_io/fetch_store.o tmp/core/formats/png.o tmp/core/image_io/gz.o tmp/core/file/dicom/image.o tmp/core/formats/tiff.o tmp/core/signal_handler.o tmp/core/math/average_space.o tmp/core/app.o tmp/core/thread.o tmp/core/file/key_value.o tmp/core/file/dicom/tree.o tmp/core/math/betainc.o tmp/core/file/dicom/dict.o tmp/core/formats/xds.o tmp/core/file/dicom/select_cmdline.o tmp/core/version.o tmp/core/formats/nifti2_gz.o tmp/core/mrtrix.o tmp/core/image_io/variable_scaling.o tmp/core/formats/nifti1.o tmp/core/image_io/mosaic.o tmp/core/file/config.o tmp/core/formats/nifti1_gz.o tmp/core/math/bessel.o tmp/core/file/png.o tmp/core/math/stats/import.o tmp/core/file/json_utils.o tmp/core/file/dicom/patient.o tmp/core/misc/bitset.o tmp/core/algo/histogram.o tmp/core/file/dicom/series.o tmp/core/exception.o tmp/core/math/stats/shuffle.o tmp/core/adapter/reslice.o tmp/core/image_io/ram.o tmp/core/formats/ram.o tmp/core/file/dicom/study.o tmp/core/formats/list.o tmp/core/image_io/png.o tmp/core/math/stats/glm.o tmp/core/formats/mrtrix.o tmp/core/stride.o -shared -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -o lib/libmrtrix.so (150/546) [CC] tmp/cmd/fixelcfestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o (151/546) [CC] tmp/cmd/fixelconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelconnectivity.cpp -o tmp/cmd/fixelconnectivity.o (152/546) [CC] tmp/cmd/fixelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o (153/546) [CC] tmp/cmd/fixelcorrespondence.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o (154/546) [CC] tmp/cmd/fixelcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o (155/546) [CC] tmp/src/fixel/filter/connect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/filter/connect.cpp -o tmp/src/fixel/filter/connect.o (156/546) [CC] tmp/cmd/fixelfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelfilter.cpp -o tmp/cmd/fixelfilter.o (157/546) [CC] tmp/cmd/fixelreorient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o (158/546) [LB] bin/5tt2gmwmi g++ tmp/cmd/5tt2gmwmi.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2gmwmi (159/546) [LB] bin/5tt2vis g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/cmd/5tt2vis.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2vis (160/546) [LB] bin/5ttcheck g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o tmp/cmd/5ttcheck.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttcheck (161/546) [LB] bin/5ttedit g++ tmp/cmd/5ttedit.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit (162/546) [LB] bin/afdconnectivity g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/cmd/afdconnectivity.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity (163/546) [LB] bin/amp2sh g++ tmp/cmd/amp2sh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2sh (164/546) [LB] bin/connectome2tck g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/connectome/extract.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/weights.o tmp/src/exec_version.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectome2tck (165/546) [LB] bin/connectomeedit g++ tmp/src/stats/tfce.o tmp/src/connectome/enhance.o tmp/src/exec_version.o tmp/cmd/connectomeedit.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomeedit (166/546) [LB] bin/connectomestats g++ tmp/src/stats/tfce.o tmp/src/connectome/enhance.o tmp/src/stats/permtest.o tmp/src/exec_version.o tmp/src/connectome/connectome.o tmp/cmd/connectomestats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomestats (167/546) [LB] bin/dcmedit g++ tmp/cmd/dcmedit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcmedit (168/546) [LB] bin/dcminfo g++ tmp/src/exec_version.o tmp/cmd/dcminfo.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcminfo (169/546) [LB] bin/dirflip g++ tmp/cmd/dirflip.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirflip (170/546) [LB] bin/dirgen g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirgen.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen (171/546) [LB] bin/dirmerge g++ tmp/cmd/dirmerge.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirmerge (172/546) [LB] bin/dirorder g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirorder.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder (173/546) [LB] bin/dirsplit g++ tmp/src/dwi/directions/file.o tmp/cmd/dirsplit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit (174/546) [LB] bin/dirstat g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirstat.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat (175/546) [LB] bin/dwi2adc g++ tmp/cmd/dwi2adc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc (176/546) [LB] bin/dwi2fod g++ tmp/src/dwi/sdeconv/csd.o tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o tmp/src/dwi/sdeconv/msmt_csd.o tmp/cmd/dwi2fod.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2fod (177/546) [LB] bin/dwi2mask g++ tmp/cmd/dwi2mask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2mask (178/546) [LB] bin/dwi2tensor g++ tmp/cmd/dwi2tensor.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2tensor (179/546) [LB] bin/dwidenoise g++ tmp/src/exec_version.o tmp/cmd/dwidenoise.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise (180/546) [LB] bin/dwiextract g++ tmp/cmd/dwiextract.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwiextract (181/546) [LB] bin/fixel2peaks g++ tmp/cmd/fixel2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2peaks (182/546) [LB] bin/fixel2sh g++ tmp/cmd/fixel2sh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2sh (183/546) [LB] bin/fixelcfestats g++ tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/stats/permtest.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/fixel/filter/smooth.o tmp/cmd/fixelcfestats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcfestats (184/546) [LB] bin/fixelconnectivity g++ tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/mapping/voxel.o tmp/cmd/fixelconnectivity.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconnectivity (185/546) [LB] bin/fixelcorrespondence g++ tmp/cmd/fixelcorrespondence.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence (186/546) [LB] bin/fixelcrop g++ tmp/cmd/fixelcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcrop (187/546) [LB] bin/fixelfilter g++ tmp/src/fixel/index_remapper.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/fixel/filter/connect.o tmp/src/dwi/directions/set.o tmp/cmd/fixelfilter.o tmp/src/fixel/filter/smooth.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/resampling/downsampler.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelfilter (188/546) [LB] bin/fixelreorient g++ tmp/cmd/fixelreorient.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient (189/546) [CC] tmp/cmd/fod2dec.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o (190/546) [CC] tmp/cmd/fod2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o (191/546) [CC] tmp/cmd/label2colour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/label2colour.cpp -o tmp/cmd/label2colour.o (192/546) [CC] tmp/src/connectome/lut.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/lut.cpp -o tmp/src/connectome/lut.o (193/546) [LB] bin/fixelconvert g++ tmp/cmd/fixelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconvert (194/546) [CC] tmp/src/surface/scalar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/scalar.cpp -o tmp/src/surface/scalar.o (195/546) [CC] tmp/src/surface/polygon.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/polygon.cpp -o tmp/src/surface/polygon.o (196/546) [CC] tmp/src/surface/mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o (197/546) [CC] tmp/cmd/label2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o (198/546) [CC] tmp/src/surface/mesh_multi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o (199/546) [CC] tmp/src/surface/freesurfer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o (200/546) [CC] tmp/cmd/mtnormalise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o (201/546) [CC] tmp/cmd/maskdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o (202/546) [CC] tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o (203/546) [CC] tmp/src/surface/algo/mesh2image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o (204/546) [CC] tmp/cmd/mesh2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o (205/546) [LB] bin/label2colour g++ tmp/cmd/label2colour.o tmp/src/connectome/connectome.o tmp/src/exec_version.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2colour (206/546) [LB] bin/maskdump g++ tmp/cmd/maskdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskdump (207/546) [CC] tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o (208/546) [CC] tmp/src/surface/filter/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o (209/546) [CC] tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o (210/546) [LB] bin/label2mesh g++ tmp/src/surface/scalar.o tmp/src/connectome/lut.o tmp/src/surface/polygon.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/exec_version.o tmp/cmd/label2mesh.o tmp/src/surface/mesh_multi.o tmp/src/surface/freesurfer.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh (211/546) [CC] tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o (212/546) [LB] bin/mrtransform g++ tmp/cmd/mrtransform.o tmp/src/registration/multi_contrast.o tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrtransform (213/546) [CC] tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o (214/546) [LB] bin/fod2fixel g++ tmp/cmd/fod2fixel.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/fmls.o tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/mask.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2fixel (215/546) [CC] tmp/src/registration/transform/rigid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o (216/546) [LB] bin/fod2dec g++ tmp/src/dwi/directions/predefined.o tmp/cmd/fod2dec.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2dec (217/546) [LB] bin/mesh2voxel g++ tmp/src/surface/scalar.o tmp/src/connectome/lut.o tmp/src/surface/polygon.o tmp/src/surface/algo/mesh2image.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/cmd/mesh2voxel.o tmp/src/surface/filter/vertex_transform.o tmp/src/exec_version.o tmp/src/surface/filter/base.o tmp/src/surface/mesh_multi.o tmp/src/surface/freesurfer.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel (218/546) [CC] tmp/cmd/mraverageheader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o (219/546) [LB] bin/maskfilter g++ tmp/src/exec_version.o tmp/cmd/maskfilter.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskfilter (220/546) [CC] tmp/src/registration/transform/convergence_check.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o (221/546) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o (222/546) [CC] tmp/src/registration/transform/initialiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o (223/546) [CC] tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o (224/546) [LB] bin/mtnormalise g++ tmp/src/exec_version.o tmp/cmd/mtnormalise.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mtnormalise (225/546) [CC] tmp/cmd/mrcat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcat.cpp -o tmp/cmd/mrcat.o (226/546) [CC] tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o (227/546) [LB] bin/meshfilter g++ tmp/cmd/meshfilter.o tmp/src/surface/scalar.o tmp/src/connectome/lut.o tmp/src/surface/polygon.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/exec_version.o tmp/src/surface/filter/smooth.o tmp/src/surface/filter/base.o tmp/src/surface/mesh_multi.o tmp/src/surface/freesurfer.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshfilter (228/546) [LB] bin/meshconvert g++ tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/cmd/meshconvert.o tmp/src/surface/filter/vertex_transform.o tmp/src/surface/freesurfer.o tmp/src/exec_version.o tmp/src/surface/filter/base.o tmp/src/surface/mesh_multi.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert (229/546) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o (230/546) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o (231/546) [CC] tmp/cmd/warpinit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpinit.cpp -o tmp/cmd/warpinit.o (232/546) [CC] tmp/src/dwi/tractography/mapping/writer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/writer.cpp -o tmp/src/dwi/tractography/mapping/writer.o (233/546) [CC] tmp/cmd/tck2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o (234/546) [LB] bin/mrcheckerboardmask g++ tmp/cmd/mrcheckerboardmask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcheckerboardmask (235/546) [CC] tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o (236/546) [LB] bin/warpinit g++ tmp/cmd/warpinit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinit (237/546) [CC] tmp/cmd/mrfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o (238/546) [LB] bin/mrclusterstats g++ tmp/src/stats/tfce.o tmp/src/exec_version.o tmp/cmd/mrclusterstats.o tmp/src/stats/permtest.o tmp/src/stats/cluster.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats (239/546) [LB] bin/mrdump g++ tmp/cmd/mrdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdump (240/546) [CC] tmp/cmd/mrgrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrgrid.cpp -o tmp/cmd/mrgrid.o (241/546) [CC] tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o (242/546) [CC] tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o (243/546) [LB] bin/tck2fixel g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel (244/546) [LB] bin/mrcalc g++ tmp/cmd/mrcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcalc (245/546) [CC] tmp/cmd/mrinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o (246/546) [LB] bin/mrcat g++ tmp/cmd/mrcat.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat (247/546) [CC] tmp/cmd/mrmath.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o (248/546) [CC] tmp/cmd/mrmetric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o (249/546) [LB] bin/mrfilter g++ tmp/cmd/mrfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrfilter (250/546) [CC] tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o (251/546) [CC] tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o (252/546) [LB] bin/mraverageheader g++ tmp/src/registration/transform/rigid.o tmp/src/registration/multi_contrast.o tmp/src/exec_version.o tmp/cmd/mraverageheader.o tmp/src/registration/transform/convergence_check.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/transform/initialiser.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader (253/546) [CC] tmp/src/gui/mrview/gui_image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o (254/546) [LB] bin/mrinfo g++ tmp/cmd/mrinfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrinfo (255/546) [CC] tmp/src/gui/mrview/sync/client.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/client.cpp -o tmp/src/gui/mrview/sync/client.o (256/546) [LB] bin/mrhistogram g++ tmp/src/exec_version.o tmp/cmd/mrhistogram.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistogram (257/546) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp moc src/gui/mrview/tool/connectome/connectome.h -o tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (258/546) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp moc src/gui/mrview/tool/connectome/node_list.h -o tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (259/546) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o (260/546) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp -o tmp/src/gui/mrview/tool/connectome/node_list_moc.o (261/546) [LB] bin/mrhistmatch g++ tmp/cmd/mrhistmatch.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch (262/546) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp moc src/gui/mrview/tool/odf/preview.h -o tmp/src/gui/mrview/tool/odf/preview_moc.cpp (263/546) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/preview_moc.cpp -o tmp/src/gui/mrview/tool/odf/preview_moc.o (264/546) [LB] bin/mrgrid g++ tmp/cmd/mrgrid.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrgrid (265/546) [LB] bin/mrstats g++ tmp/cmd/mrstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats (266/546) [CC] tmp/src/gui/opengl/lighting.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/lighting.cpp -o tmp/src/gui/opengl/lighting.o (267/546) [CC] tmp/src/gui/mrview/tool/connectome/selection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/selection.cpp -o tmp/src/gui/mrview/tool/connectome/selection.o (268/546) [LB] bin/mrthreshold g++ tmp/cmd/mrthreshold.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrthreshold (269/546) [MOC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp moc src/gui/mrview/sync/interprocesscommunicator.h -o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp (270/546) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp -o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o (271/546) [CC] tmp/src/gui/mrview/sync/processlock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/processlock.cpp -o tmp/src/gui/mrview/sync/processlock.o (272/546) [CC] tmp/src/gui/mrview/colourmap_menu.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap_menu.cpp -o tmp/src/gui/mrview/colourmap_menu.o (273/546) [CC] tmp/src/gui/mrview/sync/localsocketreader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/localsocketreader.cpp -o tmp/src/gui/mrview/sync/localsocketreader.o (274/546) [CC] tmp/src/gui/dialog/report_exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o (275/546) [CC] tmp/src/gui/dialog/opengl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/opengl.cpp -o tmp/src/gui/dialog/opengl.o (278/546) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o (279/546) [MOC] tmp/src/gui/mrview/sync/localsocketreader_moc.cpp moc src/gui/mrview/sync/localsocketreader.h -o tmp/src/gui/mrview/sync/localsocketreader_moc.cpp (280/546) [CC] tmp/src/gui/mrview/sync/localsocketreader_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/localsocketreader_moc.cpp -o tmp/src/gui/mrview/sync/localsocketreader_moc.o (277/546) [CC] tmp/src/gui/shapes/cube.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cube.cpp -o tmp/src/gui/shapes/cube.o (276/546) [CC] tmp/src/gui/dwi/renderer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o (281/546) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o (282/546) [MOC] tmp/src/gui/mrview/window_moc.cpp moc src/gui/mrview/window.h -o tmp/src/gui/mrview/window_moc.cpp (283/546) [CC] tmp/src/gui/mrview/window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/window_moc.cpp -o tmp/src/gui/mrview/window_moc.o (284/546) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (285/546) [MOC] tmp/src/gui/mrview/sync/syncmanager_moc.cpp moc src/gui/mrview/sync/syncmanager.h -o tmp/src/gui/mrview/sync/syncmanager_moc.cpp (286/546) [CC] tmp/src/gui/mrview/sync/syncmanager_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/syncmanager_moc.cpp -o tmp/src/gui/mrview/sync/syncmanager_moc.o (287/546) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/file_data_vector.cpp -o tmp/src/gui/mrview/tool/connectome/file_data_vector.o (288/546) [CC] tmp/src/gui/mrview/colourmap_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap_button.cpp -o tmp/src/gui/mrview/colourmap_button.o (289/546) [CC] tmp/src/gui/mrview/tool/odf/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o (290/546) [CC] tmp/src/gui/gui.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/gui.cpp -o tmp/src/gui/gui.o (291/546) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp moc src/gui/mrview/tool/tractography/track_scalar_file.h -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (292/546) [CC] tmp/src/colourmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/colourmap.cpp -o tmp/src/colourmap.o (293/546) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (294/546) [CC] tmp/src/gui/mrview/tool/odf/preview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o (295/546) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp moc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (296/546) [CC] tmp/src/gui/cursor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/cursor.cpp -o tmp/src/gui/cursor.o (297/546) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o (298/546) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp moc src/gui/mrview/mode/ortho.h -o tmp/src/gui/mrview/mode/ortho_moc.cpp (299/546) [CC] tmp/src/gui/mrview/mode/ortho_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o (300/546) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o (301/546) [CC] tmp/src/gui/opengl/font.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/font.cpp -o tmp/src/gui/opengl/font.o (302/546) [CC] tmp/src/gui/projection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/projection.cpp -o tmp/src/gui/projection.o (303/546) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/interprocesscommunicator.cpp -o tmp/src/gui/mrview/sync/interprocesscommunicator.o (304/546) [CC] tmp/src/gui/mrview/tool/view.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/view.cpp -o tmp/src/gui/mrview/tool/view.o (305/546) [MOC] tmp/src/gui/opengl/lighting_moc.cpp moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp (306/546) [CC] tmp/src/gui/opengl/lighting_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/opengl/lighting_moc.cpp -o tmp/src/gui/opengl/lighting_moc.o (307/546) [CC] tmp/src/gui/mrview/file_open.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/file_open.cpp -o tmp/src/gui/mrview/file_open.o (308/546) [RCC] tmp/src/gui/mrview/icons.cpp rcc icons/mrview.qrc -o tmp/src/gui/mrview/icons.cpp (309/546) [CC] tmp/src/gui/mrview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/icons.cpp -o tmp/src/gui/mrview/icons.o (310/546) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp moc src/gui/mrview/spin_box.h -o tmp/src/gui/mrview/spin_box_moc.cpp (311/546) [CC] tmp/src/gui/mrview/spin_box_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/spin_box_moc.cpp -o tmp/src/gui/mrview/spin_box_moc.o (312/546) [CC] tmp/src/gui/dialog/progress.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/progress.cpp -o tmp/src/gui/dialog/progress.o (313/546) [CC] tmp/src/gui/dialog/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dicom.cpp -o tmp/src/gui/dialog/dicom.o (314/546) [MOC] tmp/src/gui/lighting_dock_moc.cpp moc src/gui/lighting_dock.h -o tmp/src/gui/lighting_dock_moc.cpp (315/546) [CC] tmp/src/gui/lighting_dock_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/lighting_dock_moc.cpp -o tmp/src/gui/lighting_dock_moc.o (316/546) [CC] tmp/src/gui/mrview/tool/odf/odf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o (317/546) [CC] tmp/src/gui/mrview/displayable.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o (318/546) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o (319/546) [CC] tmp/src/gui/mrview/mode/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o (320/546) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp moc src/gui/dialog/image_properties.h -o tmp/src/gui/dialog/image_properties_moc.cpp (321/546) [CC] tmp/src/gui/dialog/image_properties_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o (322/546) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o (323/546) [CC] tmp/src/gui/mrview/combo_box_error.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/combo_box_error.cpp -o tmp/src/gui/mrview/combo_box_error.o (324/546) [CC] tmp/src/gui/dialog/dialog.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o (325/546) [CC] tmp/src/gui/mrview/tool/fixel/directory.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o (326/546) [CC] tmp/src/gui/mrview/tool/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o (327/546) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o (328/546) [CC] tmp/src/gui/color_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/color_button.cpp -o tmp/src/gui/color_button.o (329/546) [CC] tmp/src/gui/mrview/mode/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/base.cpp -o tmp/src/gui/mrview/mode/base.o (330/546) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o (331/546) [CC] tmp/src/gui/mrview/sync/syncmanager.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/syncmanager.cpp -o tmp/src/gui/mrview/sync/syncmanager.o (332/546) [CC] tmp/src/gui/shapes/sphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/sphere.cpp -o tmp/src/gui/shapes/sphere.o (333/546) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp moc src/gui/mrview/tool/roi_editor/roi.h -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (334/546) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o (335/546) [CC] tmp/src/gui/mrview/colourbars.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourbars.cpp -o tmp/src/gui/mrview/colourbars.o (336/546) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp moc src/gui/dwi/render_frame.h -o tmp/src/gui/dwi/render_frame_moc.cpp (337/546) [CC] tmp/src/gui/dwi/render_frame_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o (338/546) [CC] tmp/src/gui/shapes/cylinder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o (339/546) [CC] tmp/src/gui/lighting_dock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/lighting_dock.cpp -o tmp/src/gui/lighting_dock.o (340/546) [CC] tmp/src/gui/dialog/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o (341/546) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o (342/546) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp moc src/gui/mrview/tool/screen_capture.h -o tmp/src/gui/mrview/tool/screen_capture_moc.cpp (343/546) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o (344/546) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/colourmap_observers.cpp -o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (345/546) [MOC] tmp/src/gui/color_button_moc.cpp moc src/gui/color_button.h -o tmp/src/gui/color_button_moc.cpp (346/546) [CC] tmp/src/gui/color_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/color_button_moc.cpp -o tmp/src/gui/color_button_moc.o (347/546) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp moc src/gui/mrview/tool/connectome/selection.h -o tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (348/546) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/selection_moc.cpp -o tmp/src/gui/mrview/tool/connectome/selection_moc.o (349/546) [CC] tmp/src/gui/mrview/tool/connectome/edge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o (350/546) [CC] tmp/cmd/mrview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ cmd/mrview.cpp -o tmp/cmd/mrview.o (351/546) [CC] tmp/src/gui/mrview/tool/screen_capture.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o (352/546) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/image4D.cpp -o tmp/src/gui/mrview/tool/fixel/image4D.o (353/546) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp moc src/gui/mrview/tool/odf/odf.h -o tmp/src/gui/mrview/tool/odf/odf_moc.cpp (354/546) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/odf_moc.cpp -o tmp/src/gui/mrview/tool/odf/odf_moc.o (355/546) [CC] tmp/src/gui/mrview/tool/overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o (356/546) [CC] tmp/src/gui/mrview/mode/lightbox.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o (357/546) [CC] tmp/src/gui/mrview/window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o (358/546) [CC] tmp/src/gui/mrview/mode/slice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o (359/546) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp moc src/gui/mrview/tool/tractography/tractography.h -o tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (360/546) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o (361/546) [CC] tmp/src/gui/mrview/tool/connectome/node.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o (362/546) [CC] tmp/src/gui/mrview/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o (363/546) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractogram.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram.o (364/546) [CC] tmp/src/gui/dwi/render_frame.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/render_frame.cpp -o tmp/src/gui/dwi/render_frame.o (365/546) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o (366/546) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o (367/546) [CC] tmp/src/gui/dialog/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/file.cpp -o tmp/src/gui/dialog/file.o (368/546) [CC] tmp/src/gui/opengl/shader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/shader.cpp -o tmp/src/gui/opengl/shader.o (369/546) [CC] tmp/src/gui/opengl/gl_core_3_3.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl_core_3_3.cpp -o tmp/src/gui/opengl/gl_core_3_3.o (370/546) [CC] tmp/src/gui/opengl/gl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl.cpp -o tmp/src/gui/opengl/gl.o (371/546) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp moc src/gui/mrview/tool/overlay.h -o tmp/src/gui/mrview/tool/overlay_moc.cpp (372/546) [CC] tmp/src/gui/mrview/tool/overlay_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o (373/546) [CC] tmp/src/gui/shapes/halfsphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/halfsphere.cpp -o tmp/src/gui/shapes/halfsphere.o (374/546) [CC] tmp/src/gui/mrview/tool/odf/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o (375/546) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp moc src/gui/mrview/mode/lightbox.h -o tmp/src/gui/mrview/mode/lightbox_moc.cpp (376/546) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/lightbox_moc.cpp -o tmp/src/gui/mrview/mode/lightbox_moc.o (377/546) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (378/546) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o (379/546) [CC] tmp/src/gui/crosshair.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/crosshair.cpp -o tmp/src/gui/crosshair.o (380/546) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o (381/546) [CC] tmp/src/gui/dialog/image_properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/image_properties.cpp -o tmp/src/gui/dialog/image_properties.o (382/546) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp moc src/gui/mrview/tool/view.h -o tmp/src/gui/mrview/tool/view_moc.cpp (383/546) [CC] tmp/src/gui/mrview/tool/view_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/view_moc.cpp -o tmp/src/gui/mrview/tool/view_moc.o (384/546) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o (385/546) [CC] tmp/src/gui/mrview/adjust_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/adjust_button.cpp -o tmp/src/gui/mrview/adjust_button.o (386/546) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o (387/546) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp moc src/gui/mrview/colourmap_button.h -o tmp/src/gui/mrview/colourmap_button_moc.cpp (388/546) [CC] tmp/src/gui/mrview/colourmap_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/colourmap_button_moc.cpp -o tmp/src/gui/mrview/colourmap_button_moc.o (389/546) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp moc src/gui/mrview/combo_box_error.h -o tmp/src/gui/mrview/combo_box_error_moc.cpp (390/546) [CC] tmp/src/gui/mrview/combo_box_error_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/combo_box_error_moc.cpp -o tmp/src/gui/mrview/combo_box_error_moc.o (391/546) [MOC] tmp/src/gui/mrview/tool/transform_moc.cpp moc src/gui/mrview/tool/transform.h -o tmp/src/gui/mrview/tool/transform_moc.cpp (392/546) [CC] tmp/src/gui/mrview/tool/transform_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/transform_moc.cpp -o tmp/src/gui/mrview/tool/transform_moc.o (393/546) [CC] tmp/src/gui/mrview/tool/transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/transform.cpp -o tmp/src/gui/mrview/tool/transform.o (394/546) [MOC] tmp/src/gui/mrview/displayable_moc.cpp moc src/gui/mrview/displayable.h -o tmp/src/gui/mrview/displayable_moc.cpp (395/546) [CC] tmp/src/gui/mrview/displayable_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/displayable_moc.cpp -o tmp/src/gui/mrview/displayable_moc.o (396/546) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp moc src/gui/mrview/adjust_button.h -o tmp/src/gui/mrview/adjust_button_moc.cpp (397/546) [CC] tmp/src/gui/mrview/adjust_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/adjust_button_moc.cpp -o tmp/src/gui/mrview/adjust_button_moc.o (398/546) [CC] tmp/src/gui/mrview/mode/ortho.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/ortho.cpp -o tmp/src/gui/mrview/mode/ortho.o (399/546) [CC] tmp/cmd/peaks2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o (400/546) [CC] tmp/cmd/sh2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o (401/546) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o (402/546) [CC] tmp/cmd/sh2power.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2power.cpp -o tmp/cmd/sh2power.o (403/546) [CC] tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o (404/546) [CC] tmp/cmd/shbasis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/shbasis.cpp -o tmp/cmd/shbasis.o (405/546) [CC] tmp/cmd/shconv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/shconv.cpp -o tmp/cmd/shconv.o (406/546) [LB] bin/peaks2amp g++ tmp/cmd/peaks2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2amp (407/546) [CC] tmp/cmd/shview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ cmd/shview.cpp -o tmp/cmd/shview.o (408/546) [LB] bin/sh2power g++ tmp/src/exec_version.o tmp/cmd/sh2power.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power (409/546) [LB] bin/mrview g++ tmp/src/gui/mrview/gui_image.o tmp/src/gui/mrview/sync/client.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/opengl/lighting.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o tmp/src/gui/mrview/sync/processlock.o tmp/src/gui/mrview/colourmap_menu.o tmp/src/surface/mesh_multi.o tmp/src/gui/mrview/sync/localsocketreader.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dialog/opengl.o tmp/src/gui/dwi/renderer.o tmp/src/gui/shapes/cube.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/mrview/sync/localsocketreader_moc.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/connectome/connectome.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/gui/mrview/sync/syncmanager_moc.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/gui/gui.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/colourmap.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/cursor.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/gui/opengl/font.o tmp/src/gui/projection.o tmp/src/gui/mrview/sync/interprocesscommunicator.o tmp/src/gui/mrview/tool/view.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/mrview/file_open.o tmp/src/gui/mrview/icons.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/dialog/progress.o tmp/src/gui/dialog/dicom.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/displayable.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/gui/mrview/combo_box_error.o tmp/src/gui/dialog/dialog.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/color_button.o tmp/src/gui/mrview/mode/base.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/mrview/sync/syncmanager.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/polygon.o tmp/src/gui/mrview/colourbars.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/shapes/cylinder.o tmp/src/gui/lighting_dock.o tmp/src/gui/dialog/list.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/exec_version.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/color_button_moc.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/cmd/mrview.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/dwi/tractography/file_base.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/mrview/tool/overlay.o tmp/src/gui/mrview/mode/lightbox.o tmp/src/gui/mrview/window.o tmp/src/gui/mrview/mode/slice.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/dwi/tractography/roi.o tmp/src/gui/mrview/volume.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/surface/mesh.o tmp/src/dwi/tractography/properties.o tmp/src/gui/dwi/render_frame.o tmp/src/dwi/directions/predefined.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/dialog/file.o tmp/src/gui/opengl/shader.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/opengl/gl.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/crosshair.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/surface/freesurfer.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/mrview/adjust_button.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/dwi/tractography/rng.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/gui/mrview/tool/transform_moc.o tmp/src/gui/mrview/tool/transform.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/gui/mrview/mode/ortho.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -Wl,-O1 /usr/lib/x86_64-linux-gnu/libQt5OpenGL.so /usr/lib/x86_64-linux-gnu/libQt5Svg.so /usr/lib/x86_64-linux-gnu/libQt5Widgets.so /usr/lib/x86_64-linux-gnu/libQt5Gui.so /usr/lib/x86_64-linux-gnu/libQt5Network.so /usr/lib/x86_64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/mrview (410/546) [RCC] tmp/src/gui/shview/icons.cpp rcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp (411/546) [CC] tmp/src/gui/shview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/icons.cpp -o tmp/src/gui/shview/icons.o (412/546) [CC] tmp/src/gui/shview/file_open.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/file_open.cpp -o tmp/src/gui/shview/file_open.o (413/546) [CC] tmp/src/gui/shview/render_window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o (414/546) [MOC] tmp/src/gui/shview/render_window_moc.cpp moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp (415/546) [CC] tmp/src/gui/shview/render_window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -pipe -std=gnu++11 -Wall -Wextra -D_REENTRANT -fPIC -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o (416/546) [CC] tmp/cmd/tck2connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o (417/546) [LB] bin/shview g++ tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/lighting_dock.o tmp/src/gui/opengl/lighting.o tmp/src/gui/dialog/list.o tmp/src/exec_version.o tmp/src/gui/color_button_moc.o tmp/cmd/shview.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dwi/renderer.o tmp/src/gui/shview/icons.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/gui.o tmp/src/dwi/directions/predefined.o tmp/src/gui/dialog/file.o tmp/src/gui/opengl/shader.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/opengl/gl.o tmp/src/gui/opengl/font.o tmp/src/gui/projection.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dialog/progress.o tmp/src/gui/crosshair.o tmp/src/dwi/directions/set.o tmp/src/gui/dialog/dicom.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/shview/file_open.o tmp/src/gui/shview/render_window.o tmp/src/gui/shview/render_window_moc.o tmp/src/gui/dialog/dialog.o tmp/src/gui/color_button.o tmp/src/gui/shapes/halfsphere.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -Wl,-O1 /usr/lib/x86_64-linux-gnu/libQt5OpenGL.so /usr/lib/x86_64-linux-gnu/libQt5Svg.so /usr/lib/x86_64-linux-gnu/libQt5Widgets.so /usr/lib/x86_64-linux-gnu/libQt5Gui.so /usr/lib/x86_64-linux-gnu/libQt5Network.so /usr/lib/x86_64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/shview (418/546) [LB] bin/shconv g++ tmp/src/exec_version.o tmp/cmd/shconv.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shconv (419/546) [LB] bin/sh2peaks g++ tmp/src/exec_version.o tmp/cmd/sh2peaks.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2peaks (420/546) [CC] tmp/src/dwi/tractography/connectome/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o (421/546) [CC] tmp/cmd/tckconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o (422/546) [LB] bin/sh2amp g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/sh2amp.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2amp (423/546) [CC] tmp/cmd/tckdfc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o (424/546) [LB] bin/sh2response g++ tmp/cmd/sh2response.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2response (425/546) [CC] tmp/src/dwi/tractography/editing/receiver.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o (426/546) [CC] tmp/cmd/tckedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckedit.cpp -o tmp/cmd/tckedit.o (427/546) [CC] tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o (428/546) [LB] bin/tck2connectome g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/file_base.o tmp/src/exec_version.o tmp/cmd/tck2connectome.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/connectome/matrix.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2connectome (429/546) [LB] bin/shbasis g++ tmp/cmd/shbasis.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shbasis (430/546) [CC] tmp/src/dwi/tractography/editing/worker.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o (431/546) [LB] bin/mrmetric g++ tmp/src/registration/transform/rigid.o tmp/src/registration/multi_contrast.o tmp/src/exec_version.o tmp/cmd/mrmetric.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric (432/546) [LB] bin/mrmath g++ tmp/src/exec_version.o tmp/cmd/mrmath.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath (433/546) [CC] tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o (434/546) [CC] tmp/src/dwi/tractography/tracking/early_exit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o (435/546) [CC] tmp/src/dwi/tractography/tracking/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o (436/546) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/write_kernel.cpp -o tmp/src/dwi/tractography/tracking/write_kernel.o (437/546) [LB] bin/tckconvert g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tckconvert.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckconvert (438/546) [CC] tmp/src/dwi/tractography/seeding/basic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o (439/546) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o (440/546) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o (441/546) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o (442/546) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD1.cpp -o tmp/src/dwi/tractography/algorithms/iFOD1.o (443/546) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/gmwmi.cpp -o tmp/src/dwi/tractography/seeding/gmwmi.o (444/546) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD2.cpp -o tmp/src/dwi/tractography/algorithms/iFOD2.o (445/546) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o (446/546) [CC] tmp/src/dwi/tractography/tracking/shared.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/shared.cpp -o tmp/src/dwi/tractography/tracking/shared.o (447/546) [CC] tmp/src/dwi/tractography/GT/externalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o (448/546) [LB] bin/tckedit g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/editing/receiver.o tmp/cmd/tckedit.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/editing/editing.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/weights.o tmp/src/exec_version.o tmp/src/dwi/tractography/editing/worker.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckedit (449/546) [CC] tmp/cmd/tckglobal.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o (450/546) [CC] tmp/src/dwi/tractography/GT/internalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o (451/546) [CC] tmp/src/dwi/tractography/GT/mhsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/mhsampler.cpp -o tmp/src/dwi/tractography/GT/mhsampler.o (452/546) [CC] tmp/src/dwi/tractography/GT/particlegrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o (453/546) [CC] tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o (454/546) [CC] tmp/src/dwi/tractography/GT/particle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o (455/546) [CC] tmp/cmd/tckinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o (456/546) [CC] tmp/cmd/tckmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckmap.cpp -o tmp/cmd/tckmap.o (457/546) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o (458/546) [CC] tmp/cmd/tckresample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckresample.cpp -o tmp/cmd/tckresample.o (459/546) [LB] bin/tckdfc g++ tmp/cmd/tckdfc.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckdfc (460/546) [CC] tmp/cmd/tcksample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o (461/546) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/track_index_range.cpp -o tmp/src/dwi/tractography/SIFT/track_index_range.o (462/546) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o (463/546) [LB] bin/tckinfo g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tckinfo.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckinfo (464/546) [LB] bin/tckresample g++ tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tckresample.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckresample (465/546) [CC] tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o (466/546) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/track_contribution.cpp -o tmp/src/dwi/tractography/SIFT/track_contribution.o (467/546) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o (468/546) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o (469/546) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o (470/546) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o (471/546) [LB] bin/tckglobal g++ tmp/src/dwi/tractography/GT/externalenergy.o tmp/cmd/tckglobal.o tmp/src/dwi/tractography/GT/internalenergy.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/GT/mhsampler.o tmp/src/dwi/tractography/GT/particlegrid.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/GT/gt.o tmp/src/dwi/tractography/GT/particle.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckglobal (472/546) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o (473/546) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o (474/546) [LB] bin/tcksample g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/cmd/tcksample.o tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksample (475/546) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o (476/546) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o (477/546) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/streamline_stats.cpp -o tmp/src/dwi/tractography/SIFT2/streamline_stats.o (478/546) [CC] tmp/cmd/tckstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckstats.cpp -o tmp/cmd/tckstats.o (479/546) [CC] tmp/cmd/tcktransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o (480/546) [CC] tmp/cmd/tensor2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tensor2metric.cpp -o tmp/cmd/tensor2metric.o (481/546) [CC] tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o (482/546) [CC] tmp/cmd/transformconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/transformconvert.cpp -o tmp/cmd/transformconvert.o (483/546) [LB] bin/tckstats g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/weights.o tmp/cmd/tckstats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckstats (484/546) [LB] bin/tckgen g++ tmp/src/dwi/tractography/tracking/method.o tmp/src/dwi/tractography/tracking/early_exit.o tmp/src/dwi/tractography/tracking/tractography.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/tracking/write_kernel.o tmp/src/dwi/tractography/seeding/basic.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tckgen.o tmp/src/dwi/tractography/ACT/gmwmi.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/seeding/seeding.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/algorithms/iFOD1.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/seeding/gmwmi.o tmp/src/dwi/tractography/algorithms/iFOD2.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/seeding/dynamic.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/tracking/shared.o tmp/src/dwi/tractography/resampling/downsampler.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckgen (485/546) [CC] tmp/cmd/tsfdivide.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o (486/546) [LB] bin/transformconvert g++ tmp/cmd/transformconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformconvert (487/546) [CC] tmp/cmd/tsfinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfinfo.cpp -o tmp/cmd/tsfinfo.o (488/546) [LB] bin/tcktransform g++ tmp/cmd/tcktransform.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcktransform (489/546) [CC] tmp/cmd/tsfmult.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o (490/546) [LB] bin/tsfdivide g++ tmp/cmd/tsfdivide.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfdivide (491/546) [LB] bin/tsfinfo g++ tmp/cmd/tsfinfo.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfinfo (492/546) [CC] tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o (493/546) [CC] tmp/cmd/tsfthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o (494/546) [CC] tmp/cmd/tsfvalidate.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o (495/546) [CC] tmp/cmd/vectorstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o (496/546) [LB] bin/tcksift2 g++ tmp/cmd/tcksift2.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/SIFT2/tckfactor.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT2/fixel_updater.o tmp/src/dwi/tractography/SIFT2/reg_calculator.o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o tmp/src/dwi/fmls.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/SIFT2/line_search.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/SIFT2/streamline_stats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift2 (497/546) [LB] bin/tensor2metric g++ tmp/cmd/tensor2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tensor2metric (498/546) [CC] tmp/cmd/voxel2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o (499/546) [LB] bin/tsfmult g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfmult.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfmult (500/546) [CC] tmp/cmd/voxel2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o (501/546) [CC] tmp/cmd/warp2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warp2metric.cpp -o tmp/cmd/warp2metric.o (502/546) [LB] bin/tsfsmooth g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfsmooth.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfsmooth (503/546) [CC] tmp/cmd/warpconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o (504/546) [LB] bin/transformcalc g++ tmp/cmd/transformcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcalc (505/546) [LB] bin/tcksift g++ tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/SIFT/sifter.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/cmd/tcksift.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/SIFT/gradient_sort.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift (506/546) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o (507/546) [LB] bin/tsfvalidate g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfvalidate.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfvalidate (508/546) [CC] tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o (509/546) [CC] tmp/cmd/transformcompose.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/transformcompose.cpp -o tmp/cmd/transformcompose.o (510/546) [LB] bin/vectorstats g++ tmp/src/stats/permtest.o tmp/src/exec_version.o tmp/cmd/vectorstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/vectorstats (511/546) [LB] bin/tsfthreshold g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfthreshold.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfthreshold (512/546) [CC] tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o (513/546) [CC] tmp/cmd/fixel2tsf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o (514/546) [LB] bin/voxel2fixel g++ tmp/cmd/voxel2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2fixel (515/546) [CC] tmp/cmd/fixel2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o (516/546) [LB] bin/warpcorrect g++ tmp/cmd/warpcorrect.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpcorrect (517/546) [CC] tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o (518/546) [LB] bin/tckmap g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/tckmap.o tmp/src/dwi/tractography/mapping/gaussian/mapper.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckmap (519/546) [CC] tmp/cmd/labelstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/labelstats.cpp -o tmp/cmd/labelstats.o (520/546) [LB] bin/warpconvert g++ tmp/cmd/warpconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpconvert (521/546) [CC] tmp/cmd/mrcentroid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcentroid.cpp -o tmp/cmd/mrcentroid.o (522/546) [LB] bin/warpinvert g++ tmp/cmd/warpinvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinvert (523/546) [CC] tmp/cmd/mrcolour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcolour.cpp -o tmp/cmd/mrcolour.o (524/546) [LB] bin/mrcolour g++ tmp/cmd/mrcolour.o tmp/src/colourmap.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcolour (525/546) [LB] bin/mrcentroid g++ tmp/cmd/mrcentroid.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcentroid (526/546) [LB] bin/labelstats g++ tmp/cmd/labelstats.o tmp/src/connectome/connectome.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelstats (527/546) [CC] tmp/cmd/mrconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o (528/546) [LB] bin/labelconvert g++ tmp/src/connectome/connectome.o tmp/src/exec_version.o tmp/cmd/labelconvert.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelconvert (529/546) [CC] tmp/cmd/mrdegibbs.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o (530/546) [CC] tmp/cmd/mredit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mredit.cpp -o tmp/cmd/mredit.o (531/546) [CC] tmp/src/registration/linear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/linear.cpp -o tmp/src/registration/linear.o (532/546) [LB] bin/transformcompose g++ tmp/src/exec_version.o tmp/cmd/transformcompose.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcompose (533/546) [LB] bin/voxel2mesh g++ tmp/src/surface/scalar.o tmp/src/surface/freesurfer.o tmp/src/exec_version.o tmp/cmd/voxel2mesh.o tmp/src/surface/polygon.o tmp/src/surface/mesh.o tmp/src/connectome/connectome.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2mesh (534/546) [CC] tmp/src/registration/nonlinear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o (535/546) [LB] bin/warp2metric g++ tmp/cmd/warp2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warp2metric (536/546) [CC] tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o (537/546) [LB] bin/mredit g++ tmp/cmd/mredit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mredit (538/546) [LB] bin/fixel2tsf g++ tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/exec_version.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/cmd/fixel2tsf.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2tsf (539/546) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o (540/546) [LB] bin/mrdegibbs g++ tmp/src/exec_version.o tmp/cmd/mrdegibbs.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdegibbs (541/546) [CC] tmp/cmd/peaks2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/peaks2fixel.cpp -o tmp/cmd/peaks2fixel.o (542/546) [LB] bin/fixel2voxel g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/fixel2voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2voxel (543/546) [LB] bin/amp2response g++ tmp/cmd/amp2response.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2response (544/546) [LB] bin/mrconvert g++ tmp/cmd/mrconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert (545/546) [LB] bin/peaks2fixel g++ tmp/cmd/peaks2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2fixel (546/546) [LB] bin/mrregister g++ tmp/src/registration/transform/rigid.o tmp/src/registration/multi_contrast.o tmp/src/registration/linear.o tmp/src/registration/transform/convergence_check.o tmp/src/registration/nonlinear.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/transform/initialiser.o tmp/src/dwi/directions/predefined.o tmp/src/registration/transform/affine.o tmp/cmd/mrregister.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrregister make[1]: Leaving directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_install make[1]: Entering directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' dh_install # Remove __pycache__ dirs that were created in build time tests find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' cp debian/mrtrix3.links.in debian/mrtrix3.links : # Generate symlinks for all the mr* commands for f in debian/mrtrix3/usr/lib/mrtrix3/bin/*; do \ bn=$(basename $f); \ if [ "$bn" = "dirsplit" ]; then \ continue; \ fi; \ echo "usr/lib/mrtrix3/bin/$bn usr/bin/$bn" >> debian/mrtrix3.links; \ echo "/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/$bn.1.gz" >> debian/mrtrix3.links; \ done echo "/usr/share/mrtrix3/matlab /usr/share/matlab/site/m/mrtrix" >> debian/mrtrix3.links echo "/usr/share/mrtrix3/matlab /usr/share/octave/site/m/mrtrix" >> debian/mrtrix3.links dh_link make[1]: Leaving directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' dh_compress -X.html make[1]: Leaving directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' dh_shlibdeps -l /build/mrtrix3-xIM3JB/mrtrix3-3.0.3/lib make[1]: Leaving directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'mrtrix3-dbgsym' in '../mrtrix3-dbgsym_3.0.3-2_amd64.deb'. dpkg-deb: building package 'mrtrix3' in '../mrtrix3_3.0.3-2_amd64.deb'. dpkg-genbuildinfo --build=any -O../mrtrix3_3.0.3-2_amd64.buildinfo dpkg-genchanges --build=any -O../mrtrix3_3.0.3-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/mrtrix3-xIM3JB /tmp/mrtrix3-3.0.3-2bp1pinva I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.Rwv0S_bJIh... I: success in 19462.9828 seconds md5: Value of 'md5' differs for mrtrix3-dbgsym_3.0.3-2_amd64.deb md5: Size differs for mrtrix3-dbgsym_3.0.3-2_amd64.deb md5: Value of 'md5' differs for mrtrix3_3.0.3-2_amd64.deb md5: Size differs for mrtrix3_3.0.3-2_amd64.deb sha1: Value of 'sha1' differs for mrtrix3-dbgsym_3.0.3-2_amd64.deb sha1: Size differs for mrtrix3-dbgsym_3.0.3-2_amd64.deb sha1: Value of 'sha1' differs for mrtrix3_3.0.3-2_amd64.deb sha1: Size differs for mrtrix3_3.0.3-2_amd64.deb sha256: Value of 'sha256' differs for mrtrix3-dbgsym_3.0.3-2_amd64.deb sha256: Size differs for mrtrix3-dbgsym_3.0.3-2_amd64.deb sha256: Value of 'sha256' differs for mrtrix3_3.0.3-2_amd64.deb sha256: Size differs for mrtrix3_3.0.3-2_amd64.deb Checksums: FAIL Cannot generate diffoscope for mrtrix3-dbgsym_3.0.3-2_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/510a76c8f782c6ab766f9e8e901a50b6f0f3f6858f5323b122b9273798e1a26b/download Cannot generate diffoscope for mrtrix3_3.0.3-2_amd64.deb: RetryError[]