Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/mrtrix3/mrtrix3_3.0.3-2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/mrtrix3-3.0.3-277tf3xvt/mrtrix3_3.0.3-2_amd64.buildinfo Get source package info: mrtrix3=3.0.3-2 Source URL: http://snapshot.notset.fr/mr/package/mrtrix3/3.0.3-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 adwaita-icon-theme=41.0-1 autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5+b1 bc=1.07.1-3+b1 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-13 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.5-1 dh-autoreconf=20 dh-python=5.20211217 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:11.2.0-2 g++-11=11.2.0-13 gcc=4:11.2.0-2 gcc-11=11.2.0-13 gcc-11-base=11.2.0-13 gettext=0.21-4 gettext-base=0.21-4 gfortran=4:11.2.0-2 gfortran-11=11.2.0-13 gir1.2-atk-1.0=2.36.0-3 gir1.2-freedesktop=1.70.0-2 gir1.2-gdkpixbuf-2.0=2.42.6+dfsg-2 gir1.2-glib-2.0=1.70.0-2 gir1.2-gtk-2.0=2.24.33-2 gir1.2-harfbuzz-0.0=2.7.4-1 gir1.2-pango-1.0=1.48.10+ds1-1 grep=3.7-1 groff-base=1.22.4-7 gtk-update-icon-cache=3.24.30-4 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hicolor-icon-theme=0.17-2 hostname=3.23 ibverbs-providers=38.0-1 icu-devtools=67.1-7 imagemagick=8:6.9.11.60+dfsg-1.3 imagemagick-6-common=8:6.9.11.60+dfsg-1.3 imagemagick-6.q16=8:6.9.11.60+dfsg-1.3 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libamd2=1:5.10.1+dfsg-4 libaom3=3.2.0-2 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libcolamd2=1:5.10.1+dfsg-4 libcom-err2=1.46.4-1 libcombblas1.16.0=1.6.2-6 libcrypt-dev=1:4.4.27-1 libcrypt1=1:4.4.27-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcups2=2.3.3op2-7 libcurl3-gnutls=7.79.1-2 libcurl4=7.79.1-2 libcurl4-openssl-dev=7.79.1-2 libcxsparse3=1:5.10.1+dfsg-4 libdatrie-dev=0.2.13-2 libdatrie1=0.2.13-2 libdav1d5=0.9.2-1+b1 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-3 libde265-0=1.0.8-1 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdeflate-dev=1.8-1 libdeflate0=1.8-1 libdouble-conversion3=3.1.5-7 libdpkg-perl=1.21.1 libdrm-amdgpu1=2.4.109-2 libdrm-common=2.4.109-2 libdrm-intel1=2.4.109-2 libdrm-nouveau2=2.4.109-2 libdrm-radeon1=2.4.109-2 libdrm2=2.4.109-2 libedit2=3.1-20210910-1 libegl-dev=1.3.4-2+b1 libegl-mesa0=21.2.6-1 libegl1=1.3.4-2+b1 libeigen3-dev=3.4.0-2 libelf1=0.186-1 libevdev2=1.12.0+dfsg-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.4.1-3 libexpat1-dev=2.4.1-3 libfabric1=1.11.0-3 libffi-dev=3.4.2-3 libffi8=3.4.2-3 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-mpi3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfido2-1=1.9.0-1 libfile-stripnondeterminism-perl=1.13.0-1 libflac8=1.3.3-2 libfltk-gl1.3=1.3.5-3 libfltk1.3=1.3.5-3 libfontconfig-dev=2.13.1-4.2 libfontconfig1=2.13.1-4.2 libfontconfig1-dev=2.13.1-4.2 libfreetype-dev=2.11.0+dfsg-1 libfreetype6=2.11.0+dfsg-1 libfreetype6-dev=2.11.0+dfsg-1 libfribidi-dev=1.0.8-2 libfribidi0=1.0.8-2 libgbm1=21.2.6-1 libgcc-11-dev=11.2.0-13 libgcc-s1=11.2.0-13 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgdk-pixbuf-2.0-0=2.42.6+dfsg-2 libgdk-pixbuf-2.0-dev=2.42.6+dfsg-2 libgdk-pixbuf2.0-bin=2.42.6+dfsg-2 libgdk-pixbuf2.0-common=2.42.6+dfsg-2 libgfortran-11-dev=11.2.0-13 libgfortran5=11.2.0-13 libgirepository-1.0-1=1.70.0-2 libgl-dev=1.3.4-2+b1 libgl1=1.3.4-2+b1 libgl1-mesa-dev=21.2.6-1 libgl1-mesa-dri=21.2.6-1 libgl2ps1.4=1.4.2+dfsg1-2 libglapi-mesa=21.2.6-1 libgles-dev=1.3.4-2+b1 libgles1=1.3.4-2+b1 libgles2=1.3.4-2+b1 libglib2.0-0=2.70.2-1 libglib2.0-bin=2.70.2-1 libglib2.0-data=2.70.2-1 libglib2.0-dev=2.70.2-1 libglib2.0-dev-bin=2.70.2-1 libglibmm-2.4-1v5=2.66.2-1 libglibmm-2.4-dev=2.66.2-1 libglpk40=5.0-1 libglu1-mesa=9.0.1-1 libglu1-mesa-dev=9.0.1-1 libglvnd-core-dev=1.3.4-2+b1 libglvnd-dev=1.3.4-2+b1 libglvnd0=1.3.4-2+b1 libglx-dev=1.3.4-2+b1 libglx-mesa0=21.2.6-1 libglx0=1.3.4-2+b1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-4 libgomp1=11.2.0-13 libgpg-error0=1.43-1 libgraphicsmagick++-q16-12=1.4+really1.3.37-1 libgraphicsmagick-q16-3=1.4+really1.3.37-1 libgraphite2-3=1.3.14-1 libgraphite2-dev=1.3.14-1 libgsl-dev=2.7.1+dfsg-3 libgsl27=2.7.1+dfsg-3 libgslcblas0=2.7.1+dfsg-3 libgssapi-krb5-2=1.18.3-7 libgtk2.0-0=2.24.33-2 libgtk2.0-common=2.24.33-2 libgtk2.0-dev=2.24.33-2 libgtkglext1=1.2.0-11 libgtkglext1-dev=1.2.0-11 libgtkmm-2.4-1v5=1:2.24.5-4+b1 libgtkmm-2.4-dev=1:2.24.5-4+b1 libgudev-1.0-0=237-2 libharfbuzz-dev=2.7.4-1 libharfbuzz-gobject0=2.7.4-1 libharfbuzz-icu0=2.7.4-1 libharfbuzz0b=2.7.4-1 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhdf5-openmpi-103-1=1.10.7+repack-4 libheif1=1.12.0-2+b3 libhogweed6=3.7.3-1 libhwloc-plugins=2.7.0-1 libhwloc15=2.7.0-1 libhypre=2.22.1-3 libibverbs1=38.0-1 libice-dev=2:1.0.10-1 libice6=2:1.0.10-1 libicu-dev=67.1-7 libicu67=67.1-7 libidn2-0=2.3.2-2 libinput-bin=1.19.2-1 libinput10=1.19.2-1 libisl23=0.24-2 libitm1=11.2.0-13 libjack-jackd2-0=1.9.19~dfsg-2 libjbig-dev=2.1-3.1+b2 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libklu1=1:5.10.1+dfsg-4 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack-dev=3.10.0-2 liblapack3=3.10.0-2 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.59+dfsg-1 libllvm12=1:12.0.1-17+b1 liblqr-1-0=0.4.2-2.1 liblsan0=11.2.0-13 libltdl7=2.4.6-15 liblz4-1=1.9.3-2 liblzma-dev=5.2.5-2 liblzma5=5.2.5-2 liblzo2-2=2.10-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmagickcore-6.q16-6=8:6.9.11.60+dfsg-1.3 libmagickwand-6.q16-6=8:6.9.11.60+dfsg-1.3 libmd0=1.0.4-1 libmd4c0=0.4.8-1 libmetis5=5.1.0.dfsg-7 libmount-dev=2.37.2-4 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libmtdev1=1.1.6-1 libmumps-5.4=5.4.1-2 libncurses-dev=6.3-1 libncurses6=6.3-1 libncursesw6=6.3-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnl-3-200=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma1=2.0.14-3 liboctave-dev=6.2.0-1 liboctave8=6.2.0-1 libogg0=1.3.4-0.1 libopengl-dev=1.3.4-2+b1 libopengl0=1.3.4-2+b1 libopenjp2-7=2.4.0-3 libopenmpi3=4.1.2-1 libopus0=1.3.1-0.1 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpango-1.0-0=1.48.10+ds1-1 libpango1.0-dev=1.48.10+ds1-1 libpangocairo-1.0-0=1.48.10+ds1-1 libpangoft2-1.0-0=1.48.10+ds1-1 libpangomm-1.4-1v5=2.46.1-1 libpangomm-1.4-dev=2.46.1-1 libpangoxft-1.0-0=1.48.10+ds1-1 libpciaccess0=0.16-1 libpcre16-3=2:8.39-13 libpcre2-16-0=10.39-3 libpcre2-32-0=10.39-3 libpcre2-8-0=10.39-3 libpcre2-dev=10.39-3 libpcre2-posix3=10.39-3 libpcre3=2:8.39-13 libpcre3-dev=2:8.39-13 libpcre32-3=2:8.39-13 libpcrecpp0v5=2:8.39-13 libperl5.32=5.32.1-6 libpetsc-real3.15=3.15.5+dfsg1-1 libpipeline1=1.5.4-1 libpixman-1-0=0.40.0-1 libpixman-1-dev=0.40.0-1 libpmix2=4.1.1~rc6-1 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libportaudio2=19.6.0-1.1 libpsl5=0.21.0-1.2 libpsm-infinipath1=3.3+20.604758e7-6.1 libpsm2-2=11.2.185-1 libpthread-stubs0-dev=0.4-1 libptscotch-6.1=6.1.1-2 libpython3-stdlib=3.9.8-1 libpython3.9-minimal=3.9.9-2 libpython3.9-stdlib=3.9.9-2 libqhull8.0=2020.2-4 libqrupdate1=1.1.2-4 libqscintilla2-qt5-15=2.11.6+dfsg-4+b1 libqscintilla2-qt5-l10n=2.11.6+dfsg-4 libqt5concurrent5=5.15.2+dfsg-14 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libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl-dev=1.1.1l-1 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-13 libstdc++6=11.2.0-13 libsub-override-perl=0.09-2 libsuitesparseconfig5=1:5.10.1+dfsg-4 libsundials-ida4=5.8.0+dfsg-1 libsundials-nvecparallel-petsc4=5.8.0+dfsg-1 libsundials-nvecserial4=5.8.0+dfsg-1 libsundials-sunlinsol2=5.8.0+dfsg-1 libsundials-sunmatrix2=5.8.0+dfsg-1 libsuperlu-dist7=7.2.0+dfsg1-2 libsuperlu5=5.3.0+dfsg1-2 libsystemd0=249.7-1 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libtext-unidecode-perl=1.30-1 libthai-data=0.1.29-1 libthai-dev=0.1.29-1 libthai0=0.1.29-1 libtiff-dev=4.3.0-2 libtiff5=4.3.0-2 libtiffxx5=4.3.0-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtrilinos-amesos12=12.18.1-2+b1 libtrilinos-aztecoo12=12.18.1-2+b1 libtrilinos-epetra12=12.18.1-2+b1 libtrilinos-epetraext12=12.18.1-2+b1 libtrilinos-galeri12=12.18.1-2+b1 libtrilinos-ifpack12=12.18.1-2+b1 libtrilinos-kokkos12=12.18.1-2+b1 libtrilinos-ml12=12.18.1-2+b1 libtrilinos-teuchos12=12.18.1-2+b1 libtrilinos-trilinosss12=12.18.1-2+b1 libtrilinos-triutils12=12.18.1-2+b1 libtrilinos-zoltan12=12.18.1-2+b1 libtsan0=11.2.0-13 libubsan1=11.2.0-13 libuchardet0=0.0.7-1 libucx0=1.12.0-1 libudev1=249.7-1 libumfpack5=1:5.10.1+dfsg-4 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libvorbis0a=1.3.7-1 libvorbisenc2=1.3.7-1 libvulkan-dev=1.2.189.0-2 libvulkan1=1.2.189.0-2 libwacom-common=1.12-1 libwacom2=1.12-1 libwayland-client0=1.19.0-2+b1 libwayland-server0=1.19.0-2+b1 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libwmf0.2-7=0.2.8.4-17+b1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libx11-dev=2:1.7.2-2+b1 libx11-xcb1=2:1.7.2-2+b1 libx265-199=3.5-2 libxau-dev=1:1.0.9-1 libxau6=1:1.0.9-1 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-icccm4=0.4.1-1.1 libxcb-image0=0.4.0-1+b3 libxcb-keysyms1=0.4.0-1+b2 libxcb-present0=1.14-3 libxcb-randr0=1.14-3 libxcb-render-util0=0.3.9-1+b1 libxcb-render0=1.14-3 libxcb-render0-dev=1.14-3 libxcb-shape0=1.14-3 libxcb-shm0=1.14-3 libxcb-shm0-dev=1.14-3 libxcb-sync1=1.14-3 libxcb-util1=0.4.0-1+b1 libxcb-xfixes0=1.14-3 libxcb-xinerama0=1.14-3 libxcb-xinput0=1.14-3 libxcb-xkb1=1.14-3 libxcb1=1.14-3 libxcb1-dev=1.14-3 libxcomposite-dev=1:0.4.5-1 libxcomposite1=1:0.4.5-1 libxcursor-dev=1:1.2.0-2 libxcursor1=1:1.2.0-2 libxdamage-dev=1:1.1.5-2 libxdamage1=1:1.1.5-2 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext-dev=2:1.3.4-1 libxext6=2:1.3.4-1 libxfixes-dev=1:5.0.3-2 libxfixes3=1:5.0.3-2 libxft-dev=2.3.2-2 libxft2=2.3.2-2 libxi-dev=2:1.8-1 libxi6=2:1.8-1 libxinerama-dev=2:1.1.4-2 libxinerama1=2:1.1.4-2 libxkbcommon-x11-0=1.3.1-1 libxkbcommon0=1.3.1-1 libxml-libxml-perl=2.0134+dfsg-2+b1 libxml-namespacesupport-perl=1.12-1.1 libxml-sax-base-perl=1.09-1.1 libxml-sax-perl=1.02+dfsg-3 libxml2=2.9.12+dfsg-5+b1 libxml2-utils=2.9.12+dfsg-5+b1 libxmu-dev=2:1.1.2-2+b3 libxmu-headers=2:1.1.2-2 libxmu6=2:1.1.2-2+b3 libxnvctrl0=470.82.00-1 libxrandr-dev=2:1.5.2-1 libxrandr2=2:1.5.2-1 libxrender-dev=1:0.9.10-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxt-dev=1:1.2.0-1 libxt6=1:1.2.0-1 libxxf86vm1=1:1.1.4-1+b2 libyaml-0-2=0.2.2-1 libz3-4=4.8.12-1+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-2 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 matlab-support-dev=0.0.23 mawk=1.3.4.20200120-2 media-types=4.0.0 mpi-default-bin=1.14 ncurses-base=6.3-1 ncurses-bin=6.3-1 ocl-icd-libopencl1=2.2.14-3 octave=6.2.0-1 octave-common=6.2.0-1 openmpi-bin=4.1.2-1 openmpi-common=4.1.2-1 openssh-client=1:8.7p1-2 pango1.0-tools=1.48.10+ds1-1 passwd=1:4.8.1-2 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 python3=3.9.8-1 python3-distutils=3.9.9-3 python3-lib2to3=3.9.9-3 python3-minimal=3.9.8-1 python3.9=3.9.9-2 python3.9-minimal=3.9.9-2 qt5-qmake=5.15.2+dfsg-14 qt5-qmake-bin=5.15.2+dfsg-14 qtbase5-dev=5.15.2+dfsg-14 qtbase5-dev-tools=5.15.2+dfsg-14 qtchooser=66-2 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 shared-mime-info=2.0-1 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 tex-common=6.17 texinfo=6.8-3 tzdata=2021e-1 ucf=3.0043 util-linux=2.37.2-4 uuid-dev=2.37.2-4 x11-common=1:7.7+23 x11proto-dev=2021.5-1 xkb-data=2.33-1 xorg-sgml-doctools=1:1.11-1.1 xtrans-dev=1.4.0-1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211228T091540Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211228T091540Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211223T212845Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d mrtrix3=3.0.3-2 && mkdir -p /build/mrtrix3-xIM3JB && dpkg-source --no-check -x /*.dsc /build/mrtrix3-xIM3JB/mrtrix3-3.0.3 && chown -R builduser:builduser /build/mrtrix3-xIM3JB" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mrtrix3-xIM3JB/mrtrix3-3.0.3 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1640185087" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/mrtrix3-xIM3JB /tmp/mrtrix3-3.0.3-277tf3xvt bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211223T212845Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.S_hbNSrndQ as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.S_hbNSrndQ Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211223T212845Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211223T212845Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1020 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4680 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-1) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211228T091540Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211228T091540Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211223T212845Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.S_hbNSrndQ Get:1 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211223T212845Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main Sources [11.8 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.1 MB in 20s (1165 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.S_hbNSrndQ I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d mrtrix3=3.0.3-2 && mkdir -p /build/mrtrix3-xIM3JB && dpkg-source --no-check -x /*.dsc /build/mrtrix3-xIM3JB/mrtrix3-3.0.3 && chown -R builduser:builduser /build/mrtrix3-xIM3JB"' exec /tmp/mmdebstrap.S_hbNSrndQ Reading package lists... NOTICE: 'mrtrix3' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mrtrix3.git Please use: git clone https://salsa.debian.org/med-team/mrtrix3.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2579 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main mrtrix3 3.0.3-2 (dsc) [2263 B] Get:2 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main mrtrix3 3.0.3-2 (tar) [2546 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211228T091540Z bookworm/main mrtrix3 3.0.3-2 (diff) [30.1 kB] Fetched 2579 kB in 2s (1196 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'mrtrix3_3.0.3-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting mrtrix3 in /build/mrtrix3-xIM3JB/mrtrix3-3.0.3 dpkg-source: info: unpacking mrtrix3_3.0.3.orig.tar.gz dpkg-source: info: unpacking mrtrix3_3.0.3-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian_build_cfg dpkg-source: info: applying python3.patch dpkg-source: info: applying mrtrix_version.patch dpkg-source: info: applying eigen-3.4.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mrtrix3-xIM3JB/mrtrix3-3.0.3 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1640185087" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.S_hbNSrndQ dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' [ -f config ] && python3 ./build clean || true find . -name '*.pyc' -delete rm clean \ config configure.log build.log \ core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp \ icons/mrview.qrc icons/shview.qrc rm: cannot remove 'clean': No such file or directory rm: cannot remove 'config': No such file or directory rm: cannot remove 'configure.log': No such file or directory rm: cannot remove 'build.log': No such file or directory rm: cannot remove 'core/version.cpp': No such file or directory rm: cannot remove 'lib/mrtrix3/_version.py': No such file or directory rm: cannot remove 'src/exec_version.cpp': No such file or directory rm: cannot remove 'icons/mrview.qrc': No such file or directory rm: cannot remove 'icons/shview.qrc': No such file or directory make[1]: [debian/rules:73: override_dh_clean] Error 1 (ignored) dh_clean make[1]: Leaving directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' ./configure -openmp # -debug MRtrix build type requested: release version with openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (Debian 11.2.0-13) 11.2.0 Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.2.11 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.3.0 Checking for PNG library: Header: 1.6.37; library: 1.6.37 Checking for FFTW library: fftw-3.3.8-sse2-avx Checking for OpenMP support: ok Checking for Qt moc: moc (version 5.15.2) Checking for Qt qmake: qmake (version 5.15.2) Checking for Qt rcc: rcc (version 5.15.2) Checking for Qt: 5.15.2 writing configuration to file './config': ok make[1]: Leaving directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' debian/rules override_dh_auto_build make[1]: Entering directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' ./build -verbose active config is default reading configuration from "config"... is_likely_text: bin/5ttgen: starts with shebang is_likely_text: bin/blend: starts with shebang is_likely_text: bin/convert_bruker: starts with shebang is_likely_text: bin/dwi2response: starts with shebang is_likely_text: bin/dwibiascorrect: starts with shebang is_likely_text: bin/dwicat: starts with shebang is_likely_text: bin/dwifslpreproc: starts with shebang is_likely_text: bin/dwigradcheck: starts with shebang is_likely_text: bin/dwinormalise: starts with shebang is_likely_text: bin/dwishellmath: starts with shebang is_likely_text: bin/for_each: starts with shebang is_likely_text: bin/gen_scheme: starts with shebang is_likely_text: bin/labelsgmfix: starts with shebang is_likely_text: bin/mrtrix3.py: utf-8 encoded is_likely_text: bin/mrtrix_cleanup: starts with shebang is_likely_text: bin/notfound: starts with shebang is_likely_text: bin/population_template: starts with shebang is_likely_text: bin/responsemean: starts with shebang getting MRtrix version from folder "."... fetching version information from "MRTRIX_BASE_VERSION" in "./core/version.h": 3.0.3 Using MRtrix version "3.0.3" version file "./core/version.cpp" is out of date - updating version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... building targets: bin/5tt2gmwmi bin/5tt2vis bin/5ttcheck bin/5ttedit bin/afdconnectivity bin/amp2sh bin/connectome2tck bin/connectomeedit bin/connectomestats bin/dcmedit bin/dcminfo bin/dirflip bin/dirgen bin/dirmerge bin/dirorder bin/dirsplit bin/dirstat bin/dwi2adc bin/dwi2fod bin/dwi2mask bin/dwi2tensor bin/dwidenoise bin/dwiextract bin/fixel2peaks bin/fixel2sh bin/mrtransform bin/fixelcfestats bin/fixelconnectivity bin/fixelconvert bin/fixelcorrespondence bin/fixelcrop bin/fixelfilter bin/fixelreorient bin/fod2dec bin/fod2fixel bin/label2colour bin/label2mesh bin/mtnormalise bin/maskdump bin/maskfilter bin/mesh2voxel bin/meshconvert bin/meshfilter bin/mraverageheader bin/mrcalc bin/mrcat bin/mrcheckerboardmask bin/mrclusterstats bin/warpinit bin/tck2fixel bin/mrdump bin/mrfilter bin/mrgrid bin/mrhistmatch bin/mrhistogram bin/mrinfo bin/mrmath bin/mrmetric bin/mrstats bin/mrthreshold bin/mrview bin/peaks2amp bin/sh2amp bin/sh2peaks bin/sh2power bin/sh2response bin/shbasis bin/shconv bin/shview bin/tck2connectome bin/tckconvert bin/tckdfc bin/tckedit bin/tckgen bin/tckglobal bin/tckinfo bin/tckmap bin/tckresample bin/tcksample bin/tcksift bin/tcksift2 bin/tckstats bin/tcktransform bin/tensor2metric bin/transformcalc bin/transformconvert bin/tsfdivide bin/tsfinfo bin/tsfmult bin/tsfsmooth bin/tsfthreshold bin/tsfvalidate bin/vectorstats bin/voxel2fixel bin/voxel2mesh bin/warp2metric bin/warpconvert bin/warpcorrect bin/warpinvert bin/transformcompose bin/amp2response bin/fixel2tsf bin/fixel2voxel bin/labelconvert bin/labelstats bin/mrcentroid bin/mrcolour bin/mrconvert bin/mrdegibbs bin/mredit bin/mrregister bin/peaks2fixel TODO list contains 546 items launching 10 threads ( 1/546) [CC] tmp/core/formats/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/list.cpp -o tmp/core/formats/list.o ( 2/546) [CC] tmp/core/formats/mrtrix_sparse_legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mrtrix_sparse_legacy.cpp -o tmp/core/formats/mrtrix_sparse_legacy.o ( 4/546) [CC] tmp/core/file/name_parser.o ( 5/546) [CC] tmp/core/signal_handler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/signal_handler.cpp -o tmp/core/signal_handler.o ( 6/546) [CC] tmp/core/file/ofstream.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/ofstream.cpp -o tmp/core/file/ofstream.o ( 3/546) [CC] tmp/core/image_io/fetch_store.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/fetch_store.cpp -o tmp/core/image_io/fetch_store.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/name_parser.cpp -o tmp/core/file/name_parser.o ( 7/546) [CC] tmp/core/image_io/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/png.cpp -o tmp/core/image_io/png.o ( 8/546) [CC] tmp/core/formats/nifti2_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/nifti2_gz.cpp -o tmp/core/formats/nifti2_gz.o ( 9/546) [CC] tmp/core/file/dicom/series.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/series.cpp -o tmp/core/file/dicom/series.o ( 10/546) [CC] tmp/core/file/config.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/config.cpp -o tmp/core/file/config.o ( 11/546) [CC] tmp/core/math/stats/import.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/stats/import.cpp -o tmp/core/math/stats/import.o ( 12/546) [CC] tmp/core/filter/connected_components.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/filter/connected_components.cpp -o tmp/core/filter/connected_components.o ( 13/546) [CC] tmp/core/file/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/tiff.cpp -o tmp/core/file/tiff.o ( 14/546) [CC] tmp/core/adapter/reslice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/adapter/reslice.cpp -o tmp/core/adapter/reslice.o ( 15/546) [CC] tmp/core/image_io/variable_scaling.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/variable_scaling.cpp -o tmp/core/image_io/variable_scaling.o ( 16/546) [CC] tmp/core/formats/nifti1_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/nifti1_gz.cpp -o tmp/core/formats/nifti1_gz.o ( 17/546) [CC] tmp/core/dwi/gradient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/dwi/gradient.cpp -o tmp/core/dwi/gradient.o ( 18/546) [CC] tmp/core/image_io/scratch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/scratch.cpp -o tmp/core/image_io/scratch.o ( 19/546) [CC] tmp/core/formats/ram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/ram.cpp -o tmp/core/formats/ram.o ( 20/546) [CC] tmp/core/app.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/app.cpp -o tmp/core/app.o ( 21/546) [CC] tmp/core/file/dicom/dict.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o ( 22/546) [CC] tmp/core/file/dicom/element.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/element.cpp -o tmp/core/file/dicom/element.o ( 23/546) [CC] tmp/core/formats/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/png.cpp -o tmp/core/formats/png.o ( 24/546) [CC] tmp/core/thread.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/thread.cpp -o tmp/core/thread.o ( 25/546) [CC] tmp/core/formats/par.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/par.cpp -o tmp/core/formats/par.o ( 26/546) [CC] tmp/core/image_io/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/pipe.cpp -o tmp/core/image_io/pipe.o ( 27/546) [CC] tmp/core/file/dicom/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/mapper.cpp -o 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-DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/patient.cpp -o tmp/core/file/dicom/patient.o ( 30/546) [CC] tmp/core/stride.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/stride.cpp -o tmp/core/stride.o ( 31/546) [CC] tmp/core/math/bessel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 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version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/base.cpp -o tmp/core/image_io/base.o ( 37/546) [CC] tmp/core/file/json_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/json_utils.cpp -o tmp/core/file/json_utils.o ( 38/546) [CC] tmp/core/math/stats/glm.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/stats/glm.cpp -o tmp/core/math/stats/glm.o ( 39/546) [CC] tmp/core/math/zstatistic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/zstatistic.cpp -o tmp/core/math/zstatistic.o ( 40/546) [CC] tmp/core/file/dicom/image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o ( 41/546) [CC] tmp/core/version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/version.cpp -o tmp/core/version.o ( 42/546) [CC] tmp/core/formats/xds.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/xds.cpp -o tmp/core/formats/xds.o ( 43/546) [CC] tmp/core/phase_encoding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/phase_encoding.cpp -o tmp/core/phase_encoding.o ( 44/546) [CC] tmp/core/progressbar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 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-DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/stats.cpp -o tmp/core/stats.o ( 50/546) [CC] tmp/core/formats/nifti1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o ( 51/546) [CC] tmp/core/formats/mgz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o ( 52/546) [CC] tmp/core/file/dicom/study.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/study.cpp -o tmp/core/file/dicom/study.o ( 53/546) [CC] tmp/core/formats/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mgh.cpp -o tmp/core/formats/mgh.o ( 54/546) [CC] tmp/core/image_io/sparse.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/sparse.cpp -o tmp/core/image_io/sparse.o ( 55/546) [CC] tmp/core/formats/mri.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mri.cpp -o tmp/core/formats/mri.o ( 56/546) [CC] tmp/core/misc/bitset.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/misc/bitset.cpp -o tmp/core/misc/bitset.o ( 57/546) [CC] tmp/core/formats/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/dicom.cpp -o tmp/core/formats/dicom.o ( 58/546) [CC] tmp/core/image_io/mosaic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc 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( 75/546) [CC] tmp/core/math/betainc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/betainc.cpp -o tmp/core/math/betainc.o ( 76/546) [CC] tmp/core/image_io/default.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter 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openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o ( 87/546) [CC] tmp/src/dwi/tractography/rng.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 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tmp/src/dwi/directions/mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o ( 95/546) [CC] tmp/src/dwi/directions/predefined.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter 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tmp/src/dwi/tractography/SIFT/proc_mask.o (100/546) [CC] tmp/src/dwi/tractography/resampling/downsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/downsampler.cpp -o tmp/src/dwi/tractography/resampling/downsampler.o (101/546) [CC] tmp/src/dwi/directions/set.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 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src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o (106/546) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o (107/546) [CC] tmp/src/dwi/fmls.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o (108/546) [CC] tmp/src/dwi/tractography/file_base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o (109/546) [CC] tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o (110/546) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o (111/546) [CC] tmp/cmd/amp2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o (112/546) [CC] tmp/src/dwi/tractography/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o (113/546) [CC] tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o (114/546) [CC] tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o (115/546) [CC] tmp/src/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o (116/546) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o (117/546) [CC] tmp/cmd/connectome2tck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o (118/546) [CC] tmp/src/dwi/tractography/weights.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o (119/546) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o (120/546) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o ERROR: ( 48/546) [CC] tmp/core/math/average_space.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-xIM3JB/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/average_space.cpp -o tmp/core/math/average_space.o failed with output g++: fatal error: Killed signal terminated program cc1plus compilation terminated. make[1]: *** [debian/rules:36: override_dh_auto_build] Error 1 make[1]: Leaving directory '/build/mrtrix3-xIM3JB/mrtrix3-3.0.3' make: *** [debian/rules:30: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 E: run_chroot failed: E: command failed: chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mrtrix3-xIM3JB/mrtrix3-3.0.3 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1640185087" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" W: listening on child socket failed: Undefined subroutine &Devel::Cover::get_coverage called at /usr/bin/mmdebstrap line 105. I: removing tempdir /tmp/mmdebstrap.S_hbNSrndQ... mmdebstrap failed