Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/mrtrix3/mrtrix3_3.0.3-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/mrtrix3-3.0.3-1p4g9awwq/mrtrix3_3.0.3-1_amd64.buildinfo Get source package info: mrtrix3=3.0.3-1 Source URL: http://snapshot.notset.fr/mr/package/mrtrix3/3.0.3-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 adwaita-icon-theme=40.1.1-2 autoconf=2.71-2 automake=1:1.16.4-1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.51 bash=5.1-3+b1 bc=1.07.1-3+b1 binutils=2.37-5 binutils-common=2.37-5 binutils-x86-64-linux-gnu=2.37-5 bsdextrautils=2.37.2-2 bsdutils=1:2.37.2-2 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.3.0-9 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.1 debianutils=5.4-3 dh-autoreconf=20 dh-python=4.20201102+nmu1 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.1-1 g++-10=10.3.0-9 gcc=4:10.2.1-1 gcc-10=10.3.0-9 gcc-10-base=10.3.0-9 gcc-11-base=11.2.0-4 gettext=0.21-4 gettext-base=0.21-4 gfortran=4:10.2.1-1 gfortran-10=10.3.0-9 gir1.2-atk-1.0=2.36.0-2 gir1.2-freedesktop=1.68.0-2 gir1.2-gdkpixbuf-2.0=2.42.6+dfsg-2 gir1.2-glib-2.0=1.68.0-2 gir1.2-gtk-2.0=2.24.33-2 gir1.2-harfbuzz-0.0=2.7.4-1 gir1.2-pango-1.0=1.48.9+ds1-2 grep=3.7-1 groff-base=1.22.4-6 gtk-update-icon-cache=3.24.30-3 gzip=1.10-4 hdf5-helpers=1.10.6+repack-5 hicolor-icon-theme=0.17-2 hostname=3.23 ibverbs-providers=33.2-1 icu-devtools=67.1-7 imagemagick=8:6.9.11.60+dfsg-1.3 imagemagick-6-common=8:6.9.11.60+dfsg-1.3 imagemagick-6.q16=8:6.9.11.60+dfsg-1.3 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.5-2 libaec0=1.0.5-2 libamd2=1:5.10.1+dfsg-2 libaom0=1.0.0.errata1-3 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libglib2.0-bin=2.68.4-1 libglib2.0-data=2.68.4-1 libglib2.0-dev=2.68.4-1 libglib2.0-dev-bin=2.68.4-1 libglibmm-2.4-1v5=2.64.2-2 libglibmm-2.4-dev=2.64.2-2 libglpk40=5.0-1 libglu1-mesa=9.0.1-1 libglu1-mesa-dev=9.0.1-1 libglvnd-core-dev=1.3.4-1 libglvnd-dev=1.3.4-1 libglvnd0=1.3.4-1 libglx-dev=1.3.4-1 libglx-mesa0=21.2.1-2 libglx0=1.3.4-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.2-2 libgomp1=11.2.0-4 libgpg-error0=1.42-3 libgraphicsmagick++-q16-12=1.4+really1.3.36+hg16481-2 libgraphicsmagick-q16-3=1.4+really1.3.36+hg16481-2 libgraphite2-3=1.3.14-1 libgraphite2-dev=1.3.14-1 libgsl-dev=2.7+dfsg-2 libgsl25=2.7+dfsg-2 libgslcblas0=2.7+dfsg-2 libgssapi-krb5-2=1.18.3-7 libgtk2.0-0=2.24.33-2 libgtk2.0-common=2.24.33-2 libgtk2.0-dev=2.24.33-2 libgtkglext1=1.2.0-11 libgtkglext1-dev=1.2.0-11 libgtkmm-2.4-1v5=1:2.24.5-4+b1 libgtkmm-2.4-dev=1:2.24.5-4+b1 libgudev-1.0-0=237-2 libharfbuzz-dev=2.7.4-1 libharfbuzz-gobject0=2.7.4-1 libharfbuzz-icu0=2.7.4-1 libharfbuzz0b=2.7.4-1 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libqt5dbus5=5.15.2+dfsg-10 libqt5gui5=5.15.2+dfsg-10 libqt5help5=5.15.2-5 libqt5network5=5.15.2+dfsg-10 libqt5opengl5=5.15.2+dfsg-10 libqt5opengl5-dev=5.15.2+dfsg-10 libqt5printsupport5=5.15.2+dfsg-10 libqt5sql5=5.15.2+dfsg-10 libqt5svg5=5.15.2-3 libqt5svg5-dev=5.15.2-3 libqt5test5=5.15.2+dfsg-10 libqt5widgets5=5.15.2+dfsg-10 libqt5xml5=5.15.2+dfsg-10 libquadmath0=11.2.0-4 librdmacm1=33.2-1 libreadline-dev=8.1-2 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsamplerate0=0.2.1+ds0-1 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libscalapack-openmpi2.1=2.1.0-4 libseccomp2=2.5.1-1 libselinux1=3.1-3 libselinux1-dev=3.1-3 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsensors-config=1:3.6.0-7 libsensors5=1:3.6.0-7 libsepol1=3.1-1 libsepol1-dev=3.1-1 libsigc++-2.0-0v5=2.10.4-2 libsigc++-2.0-dev=2.10.4-2 libsigsegv2=2.13-1 libsm-dev=2:1.2.3-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-2 libsndfile1=1.0.31-2 libsqlite3-0=3.36.0-2 libssh2-1=1.9.0-3 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libwayland-client0=1.19.0-2 libwayland-server0=1.19.0-2 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libwmf0.2-7=0.2.8.4-17+b1 libx11-6=2:1.7.2-1 libx11-data=2:1.7.2-1 libx11-dev=2:1.7.2-1 libx11-xcb1=2:1.7.2-1 libx265-192=3.4-2 libxau-dev=1:1.0.9-1 libxau6=1:1.0.9-1 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-icccm4=0.4.1-1.1 libxcb-image0=0.4.0-1+b3 libxcb-keysyms1=0.4.0-1+b2 libxcb-present0=1.14-3 libxcb-randr0=1.14-3 libxcb-render-util0=0.3.9-1+b1 libxcb-render0=1.14-3 libxcb-render0-dev=1.14-3 libxcb-shape0=1.14-3 libxcb-shm0=1.14-3 libxcb-shm0-dev=1.14-3 libxcb-sync1=1.14-3 libxcb-util1=0.4.0-1+b1 libxcb-xfixes0=1.14-3 libxcb-xinerama0=1.14-3 libxcb-xinput0=1.14-3 libxcb-xkb1=1.14-3 libxcb1=1.14-3 libxcb1-dev=1.14-3 libxcomposite-dev=1:0.4.5-1 libxcomposite1=1:0.4.5-1 libxcursor-dev=1:1.2.0-2 libxcursor1=1:1.2.0-2 libxdamage-dev=1:1.1.5-2 libxdamage1=1:1.1.5-2 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext-dev=2:1.3.3-1.1 libxext6=2:1.3.3-1.1 libxfixes-dev=1:5.0.3-2 libxfixes3=1:5.0.3-2 libxft-dev=2.3.2-2 libxft2=2.3.2-2 libxi-dev=2:1.7.10-1 libxi6=2:1.7.10-1 libxinerama-dev=2:1.1.4-2 libxinerama1=2:1.1.4-2 libxkbcommon-x11-0=1.0.3-2 libxkbcommon0=1.0.3-2 libxml-libxml-perl=2.0134+dfsg-2+b1 libxml-namespacesupport-perl=1.12-1.1 libxml-sax-base-perl=1.09-1.1 libxml-sax-perl=1.02+dfsg-3 libxml2=2.9.12+dfsg-3 libxml2-utils=2.9.12+dfsg-3 libxmu-dev=2:1.1.2-2+b3 libxmu-headers=2:1.1.2-2 libxmu6=2:1.1.2-2+b3 libxnvctrl0=470.57.02-2 libxrandr-dev=2:1.5.1-1 libxrandr2=2:1.5.1-1 libxrender-dev=1:0.9.10-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxt-dev=1:1.2.0-1 libxt6=1:1.2.0-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.10-1 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.46-4 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 matlab-support-dev=0.0.22 mawk=1.3.4.20200120-2 media-types=4.0.0 mpi-default-bin=1.14 ncurses-base=6.2+20201114-4 ncurses-bin=6.2+20201114-4 ocl-icd-libopencl1=2.2.14-2 octave=6.2.0-1 octave-common=6.2.0-1 openmpi-bin=4.1.1-5 openmpi-common=4.1.1-5 openssh-client=1:8.4p1-6 pango1.0-tools=1.48.9+ds1-2 passwd=1:4.8.1-1 patch=2.7.6-7 perl=5.32.1-5 perl-base=5.32.1-5 perl-modules-5.32=5.32.1-5 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 python3=3.9.2-3 python3-distutils=3.9.7-1 python3-lib2to3=3.9.7-1 python3-minimal=3.9.2-3 python3.9=3.9.7-2 python3.9-minimal=3.9.7-2 qt5-qmake=5.15.2+dfsg-10 qt5-qmake-bin=5.15.2+dfsg-10 qtbase5-dev=5.15.2+dfsg-10 qtbase5-dev-tools=5.15.2+dfsg-10 qtchooser=66-2 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 shared-mime-info=2.0-1 sysvinit-utils=2.96-7 tar=1.34+dfsg-1 tex-common=6.17 texinfo=6.7.0.dfsg.2-6 tzdata=2021a-1 ucf=3.0043 util-linux=2.37.2-2 uuid-dev=2.37.2-2 x11-common=1:7.7+23 x11proto-dev=2020.1-1 x11proto-input-dev=2020.1-1 x11proto-randr-dev=2020.1-1 x11proto-xext-dev=2020.1-1 x11proto-xinerama-dev=2020.1-1 xkb-data=2.33-1 xorg-sgml-doctools=1:1.11-1.1 xtrans-dev=1.4.0-1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210914T024050Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210914T024050Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210912T083124Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210905T204125Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d mrtrix3=3.0.3-1 && mkdir -p /build/mrtrix3-Xi50HT && dpkg-source --no-check -x /*.dsc /build/mrtrix3-Xi50HT/mrtrix3-3.0.3 && chown -R builduser:builduser /build/mrtrix3-Xi50HT" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mrtrix3-Xi50HT/mrtrix3-3.0.3 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1631127271" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/mrtrix3-Xi50HT /tmp/mrtrix3-3.0.3-1p4g9awwq bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20210905T204125Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.6mOmFQ6KNu as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.6mOmFQ6KNu Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210905T204125Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210905T204125Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (809 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4667 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-17) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210914T024050Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210914T024050Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210912T083124Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210905T204125Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.6mOmFQ6KNu Get:1 http://snapshot.notset.fr/archive/debian/20210914T024050Z bookworm InRelease [128 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210912T083124Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210905T204125Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210914T024050Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210914T024050Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210914T024050Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210914T024050Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210914T024050Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210914T024050Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210914T024050Z bookworm/main Sources [11.6 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210914T024050Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210912T083124Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20210912T083124Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20210912T083124Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210912T083124Z unstable/main amd64 Packages [11.9 MB] Fetched 35.0 MB in 29s (1214 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.6mOmFQ6KNu I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d mrtrix3=3.0.3-1 && mkdir -p /build/mrtrix3-Xi50HT && dpkg-source --no-check -x /*.dsc /build/mrtrix3-Xi50HT/mrtrix3-3.0.3 && chown -R builduser:builduser /build/mrtrix3-Xi50HT"' exec /tmp/mmdebstrap.6mOmFQ6KNu Reading package lists... NOTICE: 'mrtrix3' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mrtrix3.git Please use: git clone https://salsa.debian.org/med-team/mrtrix3.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2558 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210914T024050Z bookworm/main mrtrix3 3.0.3-1 (dsc) [2235 B] Get:2 http://snapshot.notset.fr/archive/debian/20210914T024050Z bookworm/main mrtrix3 3.0.3-1 (tar) [2546 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210914T024050Z bookworm/main mrtrix3 3.0.3-1 (diff) [9228 B] Fetched 2558 kB in 2s (1264 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'mrtrix3_3.0.3-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting mrtrix3 in /build/mrtrix3-Xi50HT/mrtrix3-3.0.3 dpkg-source: info: unpacking mrtrix3_3.0.3.orig.tar.gz dpkg-source: info: unpacking mrtrix3_3.0.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian_build_cfg dpkg-source: info: applying python3.patch dpkg-source: info: applying mrtrix_version.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mrtrix3-Xi50HT/mrtrix3-3.0.3 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1631127271" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.6mOmFQ6KNu dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Yaroslav Halchenko dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/mrtrix3-Xi50HT/mrtrix3-3.0.3' [ -f config ] && python3 ./build clean || true find . -name '*.pyc' -delete rm clean \ config configure.log build.log \ core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp \ icons/mrview.qrc icons/shview.qrc rm: cannot remove 'clean': No such file or directory rm: cannot remove 'config': No such file or directory rm: cannot remove 'configure.log': No such file or directory rm: cannot remove 'build.log': No such file or directory rm: cannot remove 'core/version.cpp': No such file or directory rm: cannot remove 'lib/mrtrix3/_version.py': No such file or directory rm: cannot remove 'src/exec_version.cpp': No such file or directory rm: cannot remove 'icons/mrview.qrc': No such file or directory rm: cannot remove 'icons/shview.qrc': No such file or directory make[1]: [debian/rules:73: override_dh_clean] Error 1 (ignored) dh_clean make[1]: Leaving directory '/build/mrtrix3-Xi50HT/mrtrix3-3.0.3' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/mrtrix3-Xi50HT/mrtrix3-3.0.3' ./configure -openmp # -debug MRtrix build type requested: release version with openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (Debian 10.3.0-9) 10.3.0 Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.3.9 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.2.11 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.3.0 Checking for PNG library: Header: 1.6.37; library: 1.6.37 Checking for FFTW library: fftw-3.3.8-sse2-avx Checking for OpenMP support: ok Checking for Qt moc: moc (version 5.15.2) Checking for Qt qmake: qmake (version 5.15.2) Checking for Qt rcc: rcc (version 5.15.2) Checking for Qt: 5.15.2 writing configuration to file './config': ok make[1]: Leaving directory '/build/mrtrix3-Xi50HT/mrtrix3-3.0.3' debian/rules override_dh_auto_build make[1]: Entering directory '/build/mrtrix3-Xi50HT/mrtrix3-3.0.3' ./build -verbose active config is default reading configuration from "config"... is_likely_text: bin/5ttgen: starts with shebang is_likely_text: bin/blend: starts with shebang is_likely_text: bin/convert_bruker: starts with shebang is_likely_text: bin/dwi2response: starts with shebang is_likely_text: bin/dwibiascorrect: starts with shebang is_likely_text: bin/dwicat: starts with shebang is_likely_text: bin/dwifslpreproc: starts with shebang is_likely_text: bin/dwigradcheck: starts with shebang is_likely_text: bin/dwinormalise: starts with shebang is_likely_text: bin/dwishellmath: starts with shebang is_likely_text: bin/for_each: starts with shebang is_likely_text: bin/gen_scheme: starts with shebang is_likely_text: bin/labelsgmfix: starts with shebang is_likely_text: bin/mrtrix3.py: utf-8 encoded is_likely_text: bin/mrtrix_cleanup: starts with shebang is_likely_text: bin/notfound: starts with shebang is_likely_text: bin/population_template: starts with shebang is_likely_text: bin/responsemean: starts with shebang getting MRtrix version from folder "."... fetching version information from "MRTRIX_BASE_VERSION" in "./core/version.h": 3.0.3 Using MRtrix version "3.0.3" version file "./core/version.cpp" is out of date - updating version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... building targets: bin/5tt2gmwmi bin/5tt2vis bin/5ttcheck bin/5ttedit bin/afdconnectivity bin/amp2response bin/amp2sh bin/connectome2tck bin/connectomeedit bin/connectomestats bin/dcmedit bin/dcminfo bin/dirflip bin/dirgen bin/dirmerge bin/dirorder bin/dirsplit bin/dirstat bin/dwi2adc bin/dwi2fod bin/dwi2mask bin/dwi2tensor bin/dwidenoise bin/dwiextract bin/fixel2peaks bin/fixel2sh bin/fixel2tsf bin/fixel2voxel bin/fixelcfestats bin/fixelconnectivity bin/fixelconvert bin/fixelcorrespondence bin/fixelcrop bin/fixelfilter bin/fixelreorient bin/fod2dec bin/fod2fixel bin/label2colour bin/label2mesh bin/labelconvert bin/labelstats bin/maskdump bin/maskfilter bin/mesh2voxel bin/meshconvert bin/meshfilter bin/mraverageheader bin/mrcalc bin/mrcat bin/mrcentroid bin/mrcheckerboardmask bin/mrclusterstats bin/mrcolour bin/mrconvert bin/mrdegibbs bin/mrdump bin/mredit bin/mrfilter bin/mrgrid bin/mrhistmatch bin/mrhistogram bin/mrinfo bin/mrmath bin/mrmetric bin/mrregister bin/mrstats bin/mrthreshold bin/mrtransform bin/mrview bin/mtnormalise bin/peaks2amp bin/peaks2fixel bin/sh2amp bin/sh2peaks bin/sh2power bin/sh2response bin/shbasis bin/shconv bin/shview bin/tck2connectome bin/tck2fixel bin/tckconvert bin/tckdfc bin/tckedit bin/tckgen bin/tckglobal bin/tckinfo bin/tckmap bin/tckresample bin/tcksample bin/tcksift bin/tcksift2 bin/tckstats bin/tcktransform bin/tensor2metric bin/transformcalc bin/transformcompose bin/transformconvert bin/tsfdivide bin/tsfinfo bin/tsfmult bin/tsfsmooth bin/tsfthreshold bin/tsfvalidate bin/vectorstats bin/voxel2fixel bin/voxel2mesh bin/warp2metric bin/warpconvert bin/warpcorrect bin/warpinit bin/warpinvert TODO list contains 546 items launching 12 threads ( 1/546) [CC] tmp/cmd/5tt2gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o ( 2/546) [CC] tmp/src/dwi/tractography/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o ( 4/546) [CC] tmp/src/dwi/tractography/properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/properties.cpp -o tmp/src/dwi/tractography/properties.o ( 3/546) [CC] tmp/src/dwi/tractography/ACT/act.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o ( 5/546) [CC] tmp/core/file/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/tiff.cpp -o tmp/core/file/tiff.o ( 6/546) [CC] tmp/core/formats/nifti1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o ( 8/546) [CC] tmp/core/formats/dicom.o ( 7/546) [CC] tmp/core/thread.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/thread.cpp -o tmp/core/thread.o ( 9/546) [CC] tmp/core/formats/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/dicom.cpp -o tmp/core/formats/dicom.o ( 10/546) [CC] tmp/core/math/betainc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mgh.cpp -o tmp/core/formats/mgh.o ( 12/546) [CC] tmp/core/signal_handler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/signal_handler.cpp -o tmp/core/signal_handler.o ( 11/546) [CC] tmp/core/file/dicom/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/mapper.cpp -o tmp/core/file/dicom/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/betainc.cpp -o tmp/core/math/betainc.o ( 13/546) [CC] tmp/core/stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/stats.cpp -o tmp/core/stats.o ( 14/546) [CC] tmp/core/math/SH.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/SH.cpp -o tmp/core/math/SH.o ( 15/546) [CC] tmp/core/formats/mrtrix_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mrtrix_utils.cpp -o tmp/core/formats/mrtrix_utils.o ( 16/546) [CC] tmp/core/filter/connected_components.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/filter/connected_components.cpp -o tmp/core/filter/connected_components.o ( 17/546) [CC] tmp/core/file/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/png.cpp -o tmp/core/file/png.o ( 18/546) [CC] tmp/core/misc/bitset.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/misc/bitset.cpp -o tmp/core/misc/bitset.o ( 19/546) [CC] tmp/core/dwi/gradient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/dwi/gradient.cpp -o tmp/core/dwi/gradient.o ( 20/546) [CC] tmp/core/image_io/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/pipe.cpp -o tmp/core/image_io/pipe.o ( 21/546) [CC] tmp/core/image_io/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/png.cpp -o tmp/core/image_io/png.o ( 22/546) [CC] tmp/core/image_io/fetch_store.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/fetch_store.cpp -o tmp/core/image_io/fetch_store.o ( 23/546) [CC] tmp/core/file/dicom/patient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/patient.cpp -o tmp/core/file/dicom/patient.o ( 24/546) [CC] tmp/core/formats/mrtrix_sparse_legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mrtrix_sparse_legacy.cpp -o tmp/core/formats/mrtrix_sparse_legacy.o ( 25/546) [CC] tmp/core/formats/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/tiff.cpp -o tmp/core/formats/tiff.o ( 26/546) [CC] tmp/core/file/dicom/series.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/series.cpp -o tmp/core/file/dicom/series.o ( 27/546) [CC] tmp/core/image_io/gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/gz.cpp -o tmp/core/image_io/gz.o ( 28/546) [CC] tmp/core/formats/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/png.cpp -o tmp/core/formats/png.o ( 29/546) [CC] tmp/core/formats/mri.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mri.cpp -o tmp/core/formats/mri.o ( 30/546) [CC] tmp/core/axes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/axes.cpp -o tmp/core/axes.o ( 31/546) [CC] tmp/core/file/mmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx 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tmp/core/image_io/ram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/ram.cpp -o tmp/core/image_io/ram.o ( 34/546) [CC] tmp/core/formats/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/list.cpp -o tmp/core/formats/list.o ( 35/546) [CC] tmp/core/math/erfinv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/erfinv.cpp -o tmp/core/math/erfinv.o ( 36/546) [CC] tmp/core/file/name_parser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/name_parser.cpp -o tmp/core/file/name_parser.o ( 37/546) [CC] tmp/core/math/stats/shuffle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 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-DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/mrtrix.cpp -o tmp/core/mrtrix.o ( 40/546) [CC] tmp/core/image_io/mosaic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/mosaic.cpp -o tmp/core/image_io/mosaic.o ( 41/546) [CC] tmp/core/algo/histogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/algo/histogram.cpp -o tmp/core/algo/histogram.o ( 42/546) [CC] tmp/core/math/bessel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/bessel.cpp -o tmp/core/math/bessel.o ( 43/546) [CC] tmp/core/formats/nifti2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/nifti2.cpp -o tmp/core/formats/nifti2.o ( 44/546) [CC] tmp/core/image_io/variable_scaling.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/variable_scaling.cpp -o tmp/core/image_io/variable_scaling.o ( 45/546) [CC] tmp/core/formats/mrtrix_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter 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-DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/stats/glm.cpp -o tmp/core/math/stats/glm.o ( 50/546) [CC] tmp/core/image_io/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter 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-O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/app.cpp -o tmp/core/app.o ( 58/546) [CC] tmp/core/file/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter 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-fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/progressbar.cpp -o tmp/core/progressbar.o ( 66/546) [CC] tmp/core/file/dicom/element.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 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-DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o ( 69/546) [CC] tmp/core/header.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/header.cpp -o tmp/core/header.o ( 70/546) [CC] tmp/core/adapter/reslice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/adapter/reslice.cpp -o tmp/core/adapter/reslice.o ( 71/546) [CC] tmp/core/stride.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT 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-std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/ofstream.cpp -o tmp/core/file/ofstream.o ( 76/546) [CC] tmp/core/version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter 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tmp/core/file/key_value.o ( 80/546) [CC] tmp/core/file/dicom/image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o ( 81/546) [CC] tmp/core/image_io/sparse.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS 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-g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/nifti2_gz.cpp -o tmp/core/formats/nifti2_gz.o ( 84/546) [CC] tmp/core/phase_encoding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 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/usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o ( 90/546) [CC] tmp/cmd/5ttedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o ( 91/546) [CC] tmp/src/dwi/directions/set.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o ( 92/546) [CC] tmp/src/dwi/tractography/resampling/resampling.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/resampling.cpp -o tmp/src/dwi/tractography/resampling/resampling.o ( 93/546) [CC] tmp/src/dwi/tractography/mapping/voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o ( 94/546) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o ( 95/546) [CC] tmp/src/dwi/fmls.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o ( 96/546) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o ( 97/546) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o ( 98/546) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o ( 99/546) [CC] tmp/src/dwi/tractography/resampling/arc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/arc.cpp -o tmp/src/dwi/tractography/resampling/arc.o (100/546) [CC] tmp/src/dwi/tractography/resampling/upsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/upsampler.cpp -o tmp/src/dwi/tractography/resampling/upsampler.o (101/546) [CC] tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o (102/546) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o (103/546) [CC] tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o (104/546) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o (105/546) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o (106/546) [CC] tmp/src/dwi/tractography/mapping/mapping.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/mapping.cpp -o tmp/src/dwi/tractography/mapping/mapping.o (107/546) [CC] tmp/src/dwi/directions/predefined.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/predefined.cpp -o tmp/src/dwi/directions/predefined.o (108/546) [CC] tmp/src/dwi/directions/mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o (109/546) [CC] tmp/src/dwi/tractography/resampling/downsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/downsampler.cpp -o tmp/src/dwi/tractography/resampling/downsampler.o (110/546) [CC] tmp/src/dwi/tractography/file_base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o (111/546) [CC] tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o (112/546) [CC] tmp/cmd/amp2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o (113/546) [CC] tmp/cmd/connectome2tck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o (114/546) [CC] tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o (115/546) [CC] tmp/src/dwi/tractography/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o (116/546) [CC] tmp/src/dwi/tractography/weights.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o (117/546) [CC] tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o (118/546) [CC] tmp/src/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o (119/546) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o (120/546) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o (121/546) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o (122/546) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o (123/546) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o (124/546) [CC] tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o (125/546) [CC] tmp/cmd/dcmedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o (126/546) [CC] tmp/cmd/dcminfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o (127/546) [CC] tmp/cmd/dirflip.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o (128/546) [CC] tmp/src/dwi/directions/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o (129/546) [CC] tmp/cmd/dirgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirgen.cpp -o tmp/cmd/dirgen.o (130/546) [CC] tmp/cmd/dirmerge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o (131/546) [CC] tmp/cmd/dirorder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirorder.cpp -o tmp/cmd/dirorder.o (132/546) [CC] tmp/cmd/dirsplit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o (133/546) [CC] tmp/cmd/dirstat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o (134/546) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o (135/546) [CC] tmp/cmd/dwi2fod.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o (136/546) [CC] tmp/src/dwi/sdeconv/msmt_csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/sdeconv/msmt_csd.cpp -o tmp/src/dwi/sdeconv/msmt_csd.o (137/546) [CC] tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o (138/546) [CC] tmp/cmd/dwi2mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o (139/546) [CC] tmp/cmd/dwi2tensor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse 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-DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o (142/546) [CC] tmp/cmd/fixel2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2peaks.cpp -o tmp/cmd/fixel2peaks.o (143/546) [CC] tmp/cmd/fixel2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o (144/546) [LD] lib/libmrtrix.so g++ tmp/core/file/tiff.o tmp/core/formats/nifti1.o tmp/core/thread.o tmp/core/formats/dicom.o tmp/core/formats/mgh.o tmp/core/math/betainc.o tmp/core/file/dicom/mapper.o tmp/core/signal_handler.o tmp/core/stats.o tmp/core/math/SH.o tmp/core/formats/mrtrix_utils.o tmp/core/filter/connected_components.o tmp/core/file/png.o tmp/core/misc/bitset.o tmp/core/dwi/gradient.o tmp/core/image_io/pipe.o tmp/core/image_io/png.o tmp/core/image_io/fetch_store.o tmp/core/file/dicom/patient.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/formats/tiff.o tmp/core/file/dicom/series.o tmp/core/image_io/gz.o tmp/core/formats/png.o tmp/core/formats/mri.o tmp/core/axes.o tmp/core/file/mmap.o tmp/core/file/json_utils.o tmp/core/image_io/ram.o tmp/core/formats/list.o tmp/core/math/erfinv.o tmp/core/file/name_parser.o tmp/core/math/stats/shuffle.o tmp/core/file/dicom/select_cmdline.o tmp/core/mrtrix.o tmp/core/image_io/mosaic.o tmp/core/algo/histogram.o tmp/core/math/bessel.o tmp/core/formats/nifti2.o tmp/core/image_io/variable_scaling.o tmp/core/formats/mrtrix_gz.o tmp/core/formats/par.o tmp/core/image_io/default.o tmp/core/formats/mrtrix.o tmp/core/math/stats/glm.o tmp/core/image_io/base.o tmp/core/image_io/scratch.o tmp/core/file/dicom/tree.o tmp/core/file/config.o tmp/core/formats/xds.o tmp/core/datatype.o tmp/core/math/stats/import.o tmp/core/app.o tmp/core/file/mgh.o tmp/core/file/dicom/quick_scan.o tmp/core/formats/nifti1_gz.o tmp/core/math/stats/fwe.o tmp/core/math/average_space.o tmp/core/formats/pipe.o tmp/core/file/dicom/dict.o tmp/core/progressbar.o tmp/core/file/dicom/element.o tmp/core/file/dicom/study.o tmp/core/formats/mgz.o tmp/core/header.o tmp/core/adapter/reslice.o tmp/core/stride.o tmp/core/math/zstatistic.o tmp/core/image_io/tiff.o tmp/core/formats/ram.o tmp/core/file/ofstream.o tmp/core/version.o tmp/core/dwi/shells.o tmp/core/file/nifti_utils.o tmp/core/file/key_value.o tmp/core/file/dicom/image.o tmp/core/image_io/sparse.o tmp/core/exception.o tmp/core/formats/nifti2_gz.o tmp/core/phase_encoding.o -shared -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -o lib/libmrtrix.so (145/546) [CC] tmp/cmd/fixel2tsf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o (146/546) [CC] tmp/cmd/fixel2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o (147/546) [CC] tmp/cmd/fixelcfestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o (148/546) [CC] tmp/src/fixel/index_remapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/index_remapper.cpp -o tmp/src/fixel/index_remapper.o (149/546) [CC] tmp/src/fixel/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/matrix.cpp -o tmp/src/fixel/matrix.o (150/546) [CC] tmp/src/stats/cfe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cfe.cpp -o tmp/src/stats/cfe.o (151/546) [CC] tmp/src/fixel/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/filter/smooth.cpp -o tmp/src/fixel/filter/smooth.o (152/546) [CC] tmp/cmd/fixelconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelconnectivity.cpp -o tmp/cmd/fixelconnectivity.o (153/546) [CC] tmp/cmd/fixelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o (154/546) [CC] tmp/cmd/fixelcorrespondence.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o (155/546) [CC] tmp/cmd/fixelcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o (156/546) [LB] bin/5tt2gmwmi g++ tmp/cmd/5tt2gmwmi.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed 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tmp/src/dwi/tractography/properties.o tmp/cmd/5ttedit.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit (160/546) [LB] bin/afdconnectivity g++ tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/cmd/afdconnectivity.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity (161/546) [LB] bin/amp2response g++ tmp/cmd/amp2response.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2response (162/546) [LB] bin/amp2sh g++ tmp/cmd/amp2sh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2sh (163/546) [LB] bin/connectome2tck g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/connectome/extract.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectome2tck (164/546) [LB] bin/connectomeedit g++ tmp/src/connectome/connectome.o tmp/src/stats/tfce.o tmp/cmd/connectomeedit.o tmp/src/exec_version.o tmp/src/connectome/enhance.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomeedit (165/546) [LB] bin/connectomestats g++ tmp/cmd/connectomestats.o tmp/src/connectome/connectome.o tmp/src/stats/tfce.o tmp/src/stats/permtest.o tmp/src/exec_version.o tmp/src/connectome/enhance.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomestats (166/546) [LB] bin/dcmedit g++ tmp/cmd/dcmedit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcmedit (167/546) [LB] bin/dcminfo g++ tmp/cmd/dcminfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcminfo (168/546) [LB] bin/dirflip g++ tmp/cmd/dirflip.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirflip (169/546) [LB] bin/dirgen g++ tmp/cmd/dirgen.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen (170/546) [LB] bin/dirmerge g++ tmp/cmd/dirmerge.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirmerge (171/546) [LB] bin/dirorder g++ tmp/cmd/dirorder.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder (172/546) [LB] bin/dirsplit g++ tmp/cmd/dirsplit.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit (173/546) [LB] bin/dirstat g++ tmp/src/dwi/directions/file.o tmp/cmd/dirstat.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat (174/546) [LB] bin/dwi2adc g++ tmp/cmd/dwi2adc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc (175/546) [LB] bin/dwi2fod g++ tmp/cmd/dwi2fod.o tmp/src/dwi/sdeconv/msmt_csd.o tmp/src/dwi/sdeconv/csd.o tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2fod (176/546) [LB] bin/dwi2mask g++ tmp/cmd/dwi2mask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2mask (177/546) [LB] bin/dwi2tensor g++ tmp/cmd/dwi2tensor.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2tensor (178/546) [LB] bin/dwiextract g++ tmp/cmd/dwiextract.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwiextract (179/546) [LB] bin/fixel2peaks g++ tmp/cmd/fixel2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2peaks (180/546) [LB] bin/fixel2sh g++ tmp/cmd/fixel2sh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2sh (181/546) [LB] bin/fixel2tsf g++ tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/fixel2tsf.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2tsf (182/546) [LB] bin/fixel2voxel g++ tmp/src/dwi/tractography/properties.o tmp/cmd/fixel2voxel.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2voxel (183/546) [LB] bin/fixelcfestats g++ tmp/cmd/fixelcfestats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/stats/permtest.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/rng.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/fixel/filter/smooth.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcfestats (184/546) [CC] tmp/src/fixel/filter/connect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/filter/connect.cpp -o tmp/src/fixel/filter/connect.o (185/546) [CC] tmp/cmd/fixelfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelfilter.cpp -o tmp/cmd/fixelfilter.o (186/546) [CC] tmp/cmd/fixelreorient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o (187/546) [CC] tmp/cmd/fod2dec.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o (188/546) [LB] bin/dwidenoise g++ tmp/cmd/dwidenoise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise (189/546) [CC] tmp/cmd/fod2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o (190/546) [CC] tmp/cmd/label2colour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/label2colour.cpp -o tmp/cmd/label2colour.o (191/546) [CC] tmp/src/connectome/lut.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/lut.cpp -o tmp/src/connectome/lut.o (192/546) [CC] tmp/src/surface/mesh_multi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o (193/546) [LB] bin/fixelconnectivity g++ tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/cmd/fixelconnectivity.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconnectivity (194/546) [CC] tmp/src/surface/scalar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/scalar.cpp -o tmp/src/surface/scalar.o (195/546) [CC] tmp/cmd/label2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o (196/546) [CC] tmp/src/surface/freesurfer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o (197/546) [CC] tmp/src/surface/mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o (198/546) [CC] tmp/src/surface/polygon.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/polygon.cpp -o tmp/src/surface/polygon.o (199/546) [CC] tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o (200/546) [LB] bin/label2colour g++ tmp/cmd/label2colour.o tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2colour (201/546) [CC] tmp/cmd/labelstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/labelstats.cpp -o tmp/cmd/labelstats.o (202/546) [CC] tmp/cmd/maskdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o (203/546) [CC] tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o (204/546) [LB] bin/fixelcrop g++ tmp/cmd/fixelcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcrop (205/546) [CC] tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o (206/546) [LB] bin/fixelcorrespondence g++ tmp/cmd/fixelcorrespondence.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence (207/546) [LB] bin/labelconvert g++ tmp/src/connectome/lut.o tmp/src/connectome/connectome.o tmp/cmd/labelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelconvert (208/546) [LB] bin/label2mesh g++ tmp/src/surface/mesh_multi.o tmp/src/surface/scalar.o tmp/cmd/label2mesh.o tmp/src/surface/freesurfer.o tmp/src/exec_version.o tmp/src/surface/mesh.o tmp/src/surface/polygon.o tmp/src/connectome/connectome.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh (209/546) [LB] bin/fixelfilter g++ tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/fixel/matrix.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/fixel/filter/connect.o tmp/src/fixel/filter/smooth.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/fixelfilter.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelfilter (210/546) [LB] bin/fod2fixel g++ tmp/src/dwi/directions/mask.o tmp/cmd/fod2fixel.o tmp/src/dwi/fmls.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2fixel (211/546) [LB] bin/fixelconvert g++ tmp/cmd/fixelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconvert (212/546) [CC] tmp/cmd/mesh2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o (213/546) [CC] tmp/src/surface/algo/mesh2image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o (214/546) [CC] tmp/src/surface/filter/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o (215/546) [CC] tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o (216/546) [LB] bin/maskdump g++ tmp/src/exec_version.o tmp/cmd/maskdump.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskdump (217/546) [CC] tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o (218/546) [CC] tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o (219/546) [LB] bin/labelstats g++ tmp/src/connectome/connectome.o tmp/cmd/labelstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelstats (220/546) [CC] tmp/src/registration/transform/rigid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o (221/546) [CC] tmp/src/registration/multi_contrast.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/multi_contrast.cpp -o tmp/src/registration/multi_contrast.o (222/546) [LB] bin/fixelreorient g++ tmp/src/exec_version.o tmp/cmd/fixelreorient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient (223/546) [LB] bin/maskfilter g++ tmp/cmd/maskfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskfilter (224/546) [CC] tmp/src/registration/transform/convergence_check.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o (225/546) [CC] tmp/cmd/mraverageheader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o (226/546) [LB] bin/fod2dec g++ tmp/src/dwi/directions/predefined.o tmp/cmd/fod2dec.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2dec (227/546) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o (228/546) [CC] tmp/src/registration/transform/initialiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o (229/546) [CC] tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o (230/546) [LB] bin/meshfilter g++ tmp/src/surface/mesh_multi.o tmp/src/surface/filter/smooth.o tmp/cmd/meshfilter.o tmp/src/surface/scalar.o tmp/src/surface/freesurfer.o tmp/src/surface/mesh.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/connectome/connectome.o tmp/src/surface/filter/base.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshfilter (231/546) [CC] tmp/cmd/mrcat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcat.cpp -o tmp/cmd/mrcat.o (232/546) [CC] tmp/cmd/mrcentroid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcentroid.cpp -o tmp/cmd/mrcentroid.o (233/546) [CC] tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o (234/546) [LB] bin/meshconvert g++ tmp/src/surface/mesh_multi.o tmp/src/surface/scalar.o tmp/src/surface/freesurfer.o tmp/src/surface/mesh.o tmp/src/surface/polygon.o tmp/src/surface/filter/vertex_transform.o tmp/src/exec_version.o tmp/cmd/meshconvert.o tmp/src/connectome/connectome.o tmp/src/surface/filter/base.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert (235/546) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o (236/546) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o (237/546) [CC] tmp/cmd/mrcolour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcolour.cpp -o tmp/cmd/mrcolour.o (238/546) [LB] bin/mrcheckerboardmask g++ tmp/cmd/mrcheckerboardmask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcheckerboardmask (239/546) [CC] tmp/src/colourmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/colourmap.cpp -o tmp/src/colourmap.o (240/546) [CC] tmp/cmd/mrconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o (241/546) [LB] bin/mrcentroid g++ tmp/cmd/mrcentroid.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcentroid (242/546) [CC] tmp/cmd/mrdegibbs.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o (243/546) [CC] tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o (244/546) [LB] bin/mesh2voxel g++ tmp/src/surface/mesh_multi.o tmp/src/surface/scalar.o tmp/src/surface/freesurfer.o tmp/src/exec_version.o tmp/src/surface/mesh.o tmp/src/surface/polygon.o tmp/src/surface/filter/vertex_transform.o tmp/cmd/mesh2voxel.o tmp/src/surface/algo/mesh2image.o tmp/src/connectome/connectome.o tmp/src/surface/filter/base.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel (245/546) [LB] bin/mrcolour g++ tmp/cmd/mrcolour.o tmp/src/colourmap.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcolour (246/546) [CC] tmp/cmd/mredit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mredit.cpp -o tmp/cmd/mredit.o (247/546) [LB] bin/mrclusterstats g++ tmp/src/stats/cluster.o tmp/src/stats/permtest.o tmp/src/stats/tfce.o tmp/cmd/mrclusterstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats (248/546) [LB] bin/mrdegibbs g++ tmp/cmd/mrdegibbs.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdegibbs (249/546) [CC] tmp/cmd/mrfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o (250/546) [CC] tmp/cmd/mrgrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrgrid.cpp -o tmp/cmd/mrgrid.o (251/546) [LB] bin/mrcalc g++ tmp/cmd/mrcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcalc (252/546) [CC] tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o (253/546) [CC] tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o (254/546) [CC] tmp/cmd/mrinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o (255/546) [LB] bin/mrcat g++ tmp/src/exec_version.o tmp/cmd/mrcat.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat (256/546) [CC] tmp/cmd/mrmath.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o (257/546) [LB] bin/mrdump g++ tmp/src/exec_version.o tmp/cmd/mrdump.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdump (258/546) [CC] tmp/cmd/mrmetric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o (259/546) [CC] tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o (260/546) [CC] tmp/src/registration/linear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/linear.cpp -o tmp/src/registration/linear.o (261/546) [LB] bin/mredit g++ tmp/cmd/mredit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mredit (262/546) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o (263/546) [LB] bin/mrhistogram g++ tmp/cmd/mrhistogram.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistogram (264/546) [CC] tmp/src/registration/nonlinear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o (265/546) [LB] bin/mrconvert g++ tmp/cmd/mrconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert (266/546) [LB] bin/mrinfo g++ tmp/cmd/mrinfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrinfo (267/546) [CC] tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o (268/546) [CC] tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o (269/546) [LB] bin/mraverageheader g++ tmp/src/exec_version.o tmp/src/registration/transform/rigid.o tmp/src/registration/multi_contrast.o tmp/src/registration/transform/convergence_check.o tmp/cmd/mraverageheader.o tmp/src/registration/transform/initialiser_helpers.o tmp/src/registration/transform/initialiser.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader (270/546) [LB] bin/mrhistmatch g++ tmp/cmd/mrhistmatch.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -lz -ltiff -lpng16 -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch (271/546) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o ERROR: (262/546) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -ffile-prefix-map=/build/mrtrix3-Xi50HT/mrtrix3-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -DMRTRIX_PNG_SUPPORT -idirafter /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o failed with output g++: fatal error: Killed signal terminated program cc1plus compilation terminated. make[1]: *** [debian/rules:36: override_dh_auto_build] Error 1 make[1]: Leaving directory '/build/mrtrix3-Xi50HT/mrtrix3-3.0.3' make: *** [debian/rules:30: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 E: run_chroot failed: E: command failed: chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mrtrix3-Xi50HT/mrtrix3-3.0.3 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1631127271" dpkg-buildpackage -uc -a amd64 --build=any" W: listening on child socket failed: I: removing tempdir /tmp/mmdebstrap.6mOmFQ6KNu... mmdebstrap failed