Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/minc-tools/minc-tools_2.3.00+dfsg-8_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/minc-tools-2.3.00+dfsg-8_oipqvz7/minc-tools_2.3.00+dfsg-8_amd64.buildinfo Get source package info: minc-tools=2.3.00+dfsg-8 Source URL: http://snapshot.notset.fr/mr/package/minc-tools/2.3.00+dfsg-8/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.50.20220106-2 binutils-common=2.37.50.20220106-2 binutils-x86-64-linux-gnu=2.37.50.20220106-2 bison=2:3.8.2+dfsg-1 bsdextrautils=2.37.2-6 bsdutils=1:2.37.2-6 build-essential=12.9 bzip2=1.0.8-5 cmake=3.22.1-1+b1 cmake-data=3.22.1-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-14 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.5-1 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-2 findutils=4.8.0-1 flex=2.6.4-8 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-lmodern=2.004.5-6.1 g++=4:11.2.0-2 g++-11=11.2.0-14 gcc=4:11.2.0-2 gcc-11=11.2.0-14 gcc-11-base=11.2.0-14 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libarchive-zip-perl=1.68-1 libarchive13=3.5.2-1 libasan6=11.2.0-14 libatomic1=11.2.0-14 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37.50.20220106-2 libblkid1=2.37.2-6 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-5 libc-bin=2.33-2 libc-dev-bin=2.33-2 libc6=2.33-2 libc6-dev=2.33-2 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-14 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1 libcrypt1=1:4.4.27-1 libctf-nobfd0=2.37.50.20220106-2 libctf0=2.37.50.20220106-2 libcurl3-gnutls=7.81.0-1 libcurl4=7.81.0-1 libcurl4-openssl-dev=7.81.0-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdpkg-perl=1.21.1 libelf1=0.186-1 libexpat1=2.4.3-1 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.13.0-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.11.1+dfsg-1 libgcc-11-dev=11.2.0-14 libgcc-s1=11.2.0-14 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran5=11.2.0-14 libglib2.0-0=2.70.2-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-5 libgomp1=11.2.0-14 libgpg-error0=1.43-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libharfbuzz0b=2.7.4-1 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libice6=2:1.0.10-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-14 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libjsoncpp25=1.9.5-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkpathsea6=2021.20210626.59705-1 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-14 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libminc-dev=2.4.03-4 libminc2-5.2.0=2.4.03-4 libmount1=2.37.2-6 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libncurses6=6.3-2 libncursesw6=6.3-2 libnetcdf-dev=1:4.8.1-1 libnetcdf19=1:4.8.1-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnifti2-2=3.0.1-8 libnifti2-dev=3.0.1-8 libnifticdf-dev=3.0.1-8 libnifticdf2=3.0.1-8 libniftiio-dev=3.0.1-8 libniftiio2=3.0.1-8 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.5-1 libpixman-1-0=0.40.0-1 libpng16-16=1.6.37-3 libprocps8=2:3.3.17-6 libpsl5=0.21.0-1.2 libptexenc1=2021.20210626.59705-1 libquadmath0=11.2.0-14 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-3 libsasl2-modules-db=2.1.27+dfsg2-3 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-6 libssh2-1=1.10.0-2 libssl-dev=1.1.1m-1 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-14 libstdc++6=11.2.0-14 libsub-override-perl=0.09-2 libsynctex2=2021.20210626.59705-1 libsystemd0=250.2-3 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libteckit0=2.5.11+ds1-1 libtexlua53=2021.20210626.59705-1 libtexluajit2=2021.20210626.59705-1 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-14 libubsan1=11.2.0-14 libuchardet0=0.0.7-1 libudev1=250.2-3 libunistring2=0.9.10-6 libuuid1=2.37.2-6 libuv1=1.43.0-1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libxau6=1:1.0.9-1 libxaw7=2:1.0.13-1.1 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxi6=2:1.8-1 libxml2=2.9.12+dfsg-5+b1 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxt6=1:1.2.0-1 libznz-dev=3.0.1-8 libznz3=3.0.1-8 libzstd1=1.4.8+dfsg-3 libzzip-0-13=0.13.72+dfsg.1-1.1 linux-libc-dev=5.15.5-2 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-4 mawk=1.3.4.20200120-2 ncurses-base=6.3-1 ncurses-bin=6.3-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 procps=2:3.3.17-6 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 t1utils=1.41-4 tar=1.34+dfsg-1 tex-common=6.17 texlive-base=2021.20211217-1 texlive-binaries=2021.20210626.59705-1 texlive-latex-base=2021.20211217-1 ucf=3.0043 util-linux=2.37.2-6 x11-common=1:7.7+23 xdg-utils=1.1.3-4.1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220124T035008Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220124T035008Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220124T155715Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220116T145127Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d minc-tools=2.3.00+dfsg-8 && mkdir -p /build/minc-tools-VNk6DA && dpkg-source --no-check -x /*.dsc /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg && chown -R builduser:builduser /build/minc-tools-VNk6DA" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1642527821" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/minc-tools-VNk6DA /tmp/minc-tools-2.3.00+dfsg-8_oipqvz7 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220116T145127Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.K4ZeSmFdVb as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.K4ZeSmFdVb Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220116T145127Z unstable/main amd64 libfakeroot amd64 1.26-1.2 [48.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220116T145127Z unstable/main amd64 fakeroot amd64 1.26-1.2 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (1061 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4681 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1.2_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1.2) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1.2_amd64.deb ... Unpacking fakeroot (1.26-1.2) ... Setting up libfakeroot:amd64 (1.26-1.2) ... Setting up fakeroot (1.26-1.2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-2) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220124T035008Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220124T035008Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220124T155715Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220116T145127Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.K4ZeSmFdVb Get:1 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220124T155715Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220116T145127Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main Sources [11.8 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220124T155715Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220124T155715Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220124T155715Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220124T155715Z unstable/main amd64 Packages [12.1 MB] Fetched 35.3 MB in 29s (1210 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.K4ZeSmFdVb I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d minc-tools=2.3.00+dfsg-8 && mkdir -p /build/minc-tools-VNk6DA && dpkg-source --no-check -x /*.dsc /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg && chown -R builduser:builduser /build/minc-tools-VNk6DA"' exec /tmp/mmdebstrap.K4ZeSmFdVb Reading package lists... NOTICE: 'minc-tools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/minc-tools.git Please use: git clone https://salsa.debian.org/med-team/minc-tools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2902 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main minc-tools 2.3.00+dfsg-8 (dsc) [2181 B] Get:2 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main minc-tools 2.3.00+dfsg-8 (tar) [2885 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main minc-tools 2.3.00+dfsg-8 (diff) [13.9 kB] Fetched 2902 kB in 2s (1225 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'minc-tools_2.3.00+dfsg-8.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting minc-tools in /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg dpkg-source: info: unpacking minc-tools_2.3.00+dfsg.orig.tar.gz dpkg-source: info: unpacking minc-tools_2.3.00+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_mincedit-sensible-viewer.diff dpkg-source: info: applying build-with-libnifti dpkg-source: info: applying hdf5-1.10-support.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying fix_manpages.patch dpkg-source: info: applying fix-gcc10-build.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1642527821" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.K4ZeSmFdVb dpkg-buildpackage: info: source package minc-tools dpkg-buildpackage: info: source version 2.3.00+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg' dh_auto_configure -- cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:20 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at CMakeLists.txt:24 (CMAKE_POLICY): The OLD behavior for policy CMP0026 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for tmpnam -- Looking for tmpnam - found -- Looking for tempnam -- Looking for tempnam - found -- Looking for strerror -- Looking for strerror - found -- Looking for popen -- Looking for popen - found -- Looking for fork -- Looking for fork - found -- Looking for vfork -- Looking for vfork - found -- Looking for fdopen -- Looking for fdopen - found -- Looking for strdup -- Looking for strdup - found -- Looking for getpwnam -- Looking for getpwnam - found -- Looking for select -- Looking for select - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for system -- Looking for system - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for include file sys/dir.h -- Looking for include file sys/dir.h - found -- Looking for include file sys/ndir.h -- Looking for include file 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file inttypes.h - found -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Found BISON: /usr/bin/bison (found version "3.8.2") -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg' dh_auto_build -a cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory 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/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l [ 2%] [FLEX][lex] Building scanner with flex 2.6.4 [ 3%] [BISON][gram] Building parser with bison 3.8.2 make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/build make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/lex.c 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progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 11%] Linking C executable invert_raw_image /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -o mincconvert -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/invert_raw_image.dir/link.txt --verbose=1 [ 12%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o cd 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 13%] Linking C executable minccopy cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccopy.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -o minccopy -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 14%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc 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/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample1.dir/link.txt --verbose=1 [ 16%] Built target mincconvert [ 17%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o [ 18%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-MF CMakeFiles/minccalc.dir/minccalc/ident.c.o.d -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -o mincexample1 -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 18%] Built target minccopy make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd 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-lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/build [ 22%] 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'/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 23%] Building C object progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend [ 25%] Built target mincaverage make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake --color= [ 26%] Linking C executable mincexpand cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexpand.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/build /usr/bin/cc -g -O2 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'/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/build [ 32%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o -MF 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33%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -MF CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o.d -o CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -c 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-ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -MF CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o.d -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c [ 34%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/lex.c.o -MF CMakeFiles/minccalc.dir/lex.c.o.d -o CMakeFiles/minccalc.dir/lex.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/lex.c [ 35%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o -MF CMakeFiles/mincgen.dir/mincgen/genlib.c.o.d -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c [ 36%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/gram.c.o -MF CMakeFiles/minccalc.dir/gram.c.o.d -o CMakeFiles/minccalc.dir/gram.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/gram.c make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 37%] Linking C executable mincmakevector cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1 [ 37%] Built target mincextract make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake --color= /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake --color= [ 38%] Linking C executable mincinfo cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincinfo.dir/link.txt --verbose=1 make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f 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-I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -MF CMakeFiles/mincmath.dir/mincmath/mincmath.c.o.d -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincmath/mincmath.c make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/build [ 40%] Linking C executable mincmakescalar cd 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progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -MF CMakeFiles/mincresample.dir/mincresample/mincresample.c.o.d -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c [ 43%] Linking C executable minclookup cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf [ 43%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -MF CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o.d -o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincresample/resample_volumes.c [ 43%] Linking C executable minc_modify_header cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_modify_header.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -o minc_modify_header -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 44%] Linking C executable mincmath cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 [ 44%] Built target mincinfo make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake --color= /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf [ 44%] Built target mincmakescalar make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 45%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c [ 46%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o.d -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincreshape/mincreshape.c [ 46%] Built target minc_modify_header [ 46%] Built target minclookup [ 46%] Built target mincmakevector make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake --color= [ 46%] Linking C executable minccalc cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 47%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o -MF CMakeFiles/mincgen.dir/mincgen/getfill.c.o.d -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen/getfill.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccalc.dir/minccalc/minccalc.c.o CMakeFiles/minccalc.dir/minccalc/eval.c.o CMakeFiles/minccalc.dir/minccalc/ident.c.o CMakeFiles/minccalc.dir/minccalc/node.c.o CMakeFiles/minccalc.dir/minccalc/optim.c.o CMakeFiles/minccalc.dir/minccalc/scalar.c.o CMakeFiles/minccalc.dir/minccalc/sym.c.o CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o CMakeFiles/minccalc.dir/gram.c.o -o minccalc -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf [ 48%] Building C object progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o [ 49%] Building C object progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -MF CMakeFiles/mincstats.dir/mincstats/mincstats.c.o.d -o CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincstats/mincstats.c cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -MF CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o.d -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minctoraw/minctoraw.c make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function ‘gen_c’: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:28: warning: ‘%.16g’ directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); | ^~~~~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:27: note: assuming directive output of 22 bytes 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); | ^~~~~~~ In file included from /usr/include/stdio.h:866, from /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 24 bytes into a destination of size 20 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building C object progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -MF CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o.d -o CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincwindow/mincwindow.c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c: In function ‘create_output_file.constprop’: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:39: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:36: note: directive argument in the range [0, 2147483647] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~~~~~ In file included from /usr/include/stdio.h:866, from /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:207: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 266 bytes into a destination of size 256 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat 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-I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/load.c.o -MF CMakeFiles/mincgen.dir/mincgen/load.c.o.d -o CMakeFiles/mincgen.dir/mincgen/load.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen/load.c [ 52%] Building C object progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -MF CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o.d -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c [ 53%] Linking C executable mincwindow cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 53%] Built target mincmath make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake --color= [ 53%] Linking C executable minctoraw cd 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progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake --color= [ 53%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu 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/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincsample/mincsample.c make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake --color= [ 55%] Linking C executable mincgen cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/build [ 56%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -MF CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o.d -o CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/rawtominc/rawtominc.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 58%] Linking C executable mincresample cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o 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/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 59%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g 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/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake --color= [ 60%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o [ 60%] Linking C executable mincsample [ 60%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_io.c cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincsample.dir/link.txt --verbose=1 cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o.d -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build [ 61%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_ops.c make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 62%] Building C object progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -MF CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o.d -o CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/coordinates/worldtovoxel.c [ 63%] Linking C executable voxeltoworld cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script 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-lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -o mincstats -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 65%] Linking C executable rawtominc cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf [ 65%] Built target mincgen make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake --color= [ 65%] Built target mincresample make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/depend [ 66%] Linking C executable mincreshape make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake --color= cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory 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CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o.d -o CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/xfm/xfmconcat.c make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 68%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake --color= /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -o worldtovoxel -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 68%] Built target voxeltoworld make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -o xfmconcat -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 71%] Building C object progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -MF CMakeFiles/minccmp.dir/minccmp/minccmp.c.o.d -o CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccmp/minccmp.c [ 72%] Building C object progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -MF CMakeFiles/mincblob.dir/mincblob/mincblob.c.o.d -o CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/progs/mincblob/mincblob.c [ 73%] Linking C executable transformtags cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 73%] Built target rawtominc [ 73%] Built target mincsample make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/depend make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake --color= [ 73%] Built target mincreshape make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 73%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat 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-lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 77%] Linking C executable minccmp cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lcrypto 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/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/ecattominc/insertblood.c make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 83%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -MF CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o.d -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake --color= [ 84%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/build cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecat_file.c make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 85%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -MF CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o.d -o CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function ‘main’: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/ecattominc/machine_indep.c [ 85%] Built target xfminvert [ 86%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_network.c [ 87%] Linking C executable minctoecat cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoecat.dir/link.txt --verbose=1 /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: note: in expansion of macro ‘VERSIONSTR’ 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c: In function ‘upet_to_minc’: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: note: in expansion of macro ‘VERSIONSTR’ 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/element.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema/element.c make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema/file_io.c [ 89%] Linking C executable ecattominc cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 89%] Linking C executable mnc2nii cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 90%] Linking C executable nii2mnc cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -o nii2mnc -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio [ 90%] Built target mincblob make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 91%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema/globals.c [ 92%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/group.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema/group.c [ 93%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/message.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema/message.c [ 93%] Built target minctoecat [ 93%] Linking C executable upet2mnc cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 93%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c [ 93%] Built target mincmorph make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target nii2mnc [ 93%] Built target ecattominc make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target mnc2nii [ 94%] Linking C static library libacr_nema.a cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -P CMakeFiles/acr_nema.dir/cmake_clean_target.cmake make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1 /usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o [ 94%] Built target upet2mnc /usr/bin/ranlib libacr_nema.a make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 94%] Built target acr_nema make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build make[3]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o [ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o [ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c [ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c [ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/string_to_filename.c [ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o [100%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/siemens_to_dicom.c /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:168:41: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 168 | #define VERSION_STRING "2.01.02 built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: note: in expansion of macro ‘VERSION_STRING’ 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function ‘is_cdexport_file’: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1019:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1019 | fread(tst_str, 1, DICM_MAGIC_SIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function ‘is_ima_file’: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1042:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1042 | fread(mfg_str, 1, IMA_MAGIC_SIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function ‘use_the_files’: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:980:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 980 | fscanf(fp, "%s", pipe_output_name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c: In function ‘setup_minc_variables’: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1084 | fread(data, 1, length, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking C executable dcm2mnc cd /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -o dcm2mnc -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf libacr_nema.a -lminc2 -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [100%] Built target dcm2mnc make[2]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/minc-tools/ -a cd obj-x86_64-linux-gnu && make -j10 install DESTDIR=/build/minc-tools-VNk6DA/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg -B/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccalc -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincgen -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/invert_raw_image -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincaverage -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconcat -- Installing: 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/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minclookup.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakescalar.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakevector.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmath.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minc_modify_header.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincresample.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincreshape.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincsample.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincstats.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoraw.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/invert_raw_image.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincview.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincwindow.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/rawtominc.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/transformtags.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfm2def.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmconcat.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmflip.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfminvert.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/dcm2mnc -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/ecattominc -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoecat -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mnc2nii -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/nii2mnc -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/upet2mnc -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/dcm2mnc.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/ecattominc.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/upet2mnc.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoecat.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mnc2nii.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/nii2mnc.1 -- Installing: /build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/vff2mnc.1 make[1]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg' cd debian/minc-tools && mkdir -p usr/share && mv usr/man usr/share dh_link /usr/share/man/man1/voxeltoworld.1 \ /usr/share/man/man1/worldtovoxel.1 for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/minc-tools-VNk6DA/minc-tools-2.3.00+dfsg' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-8_amd64.deb'. dpkg-deb: building package 'minc-tools-dbgsym' in '../minc-tools-dbgsym_2.3.00+dfsg-8_amd64.deb'. dpkg-genbuildinfo --build=any -O../minc-tools_2.3.00+dfsg-8_amd64.buildinfo dpkg-genchanges --build=any -O../minc-tools_2.3.00+dfsg-8_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/minc-tools-VNk6DA /tmp/minc-tools-2.3.00+dfsg-8_oipqvz7 I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.K4ZeSmFdVb... I: success in 1267.0197 seconds md5: minc-tools-dbgsym_2.3.00+dfsg-8_amd64.deb: OK md5: minc-tools_2.3.00+dfsg-8_amd64.deb: OK sha1: minc-tools-dbgsym_2.3.00+dfsg-8_amd64.deb: OK sha1: minc-tools_2.3.00+dfsg-8_amd64.deb: OK sha256: minc-tools-dbgsym_2.3.00+dfsg-8_amd64.deb: OK sha256: minc-tools_2.3.00+dfsg-8_amd64.deb: OK Checksums: OK