Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/microbiomeutil/microbiomeutil_20101212+dfsg1-5_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/microbiomeutil-20101212+dfsg1-5a180i72l/microbiomeutil_20101212+dfsg1-5_all.buildinfo Get source package info: microbiomeutil=20101212+dfsg1-5 Source URL: http://snapshot.notset.fr/mr/package/microbiomeutil/20101212+dfsg1-5/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.50.20220106-2 binutils-common=2.37.50.20220106-2 binutils-x86-64-linux-gnu=2.37.50.20220106-2 bsdextrautils=2.37.2-5 bsdutils=1:2.37.2-5 build-essential=12.9 bzip2=1.0.8-5 cdbfasta=1.00+git20181005.014498c+dfsg-4 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-13 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.5-1 dh-autoreconf=20 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-13 gcc=4:11.2.0-2 gcc-11=11.2.0-13 gcc-11-base=11.2.0-13 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-13 libatomic1=11.2.0-13 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37.50.20220106-2 libblkid1=2.37.2-5 libbz2-1.0=1.0.8-5 libc-bin=2.33-2 libc-dev-bin=2.33-2 libc6=2.33-2 libc6-dev=2.33-2 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-13 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1 libcrypt1=1:4.4.27-1 libctf-nobfd0=2.37.50.20220106-2 libctf0=2.37.50.20220106-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdpkg-perl=1.21.1 libelf1=0.186-1 libexpat1=2.4.2-1 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.2.0-13 libgcc-s1=11.2.0-13 libgclib3=0.12.7+ds-4 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgmp10=2:6.2.1+dfsg-3 libgomp1=11.2.0-13 libgpg-error0=1.43-1 libgssapi-krb5-2=1.18.3-7 libicu67=67.1-7 libisl23=0.24-2 libitm1=11.2.0-13 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblmdb0=0.9.24-1 liblsan0=11.2.0-13 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmbedcrypto3=2.16.11-0.3 libmbedtls12=2.16.11-0.3 libmbedx509-0=2.16.11-0.3 libmount1=2.37.2-5 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.3-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.5-1 libpython3-stdlib=3.9.8-1 libpython3.9-minimal=3.9.9-2 libpython3.9-stdlib=3.9.9-2 libquadmath0=11.2.0-13 libreadline8=8.1.2-1 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-5 libsqlite3-0=3.37.2-1 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-13 libstdc++6=11.2.0-13 libsub-override-perl=0.09-2 libsystemd0=249.7-1 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-13 libubsan1=11.2.0-13 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 libuuid1=2.37.2-5 libxml2=2.9.12+dfsg-5+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-2 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-4 mawk=1.3.4.20200120-2 media-types=4.0.0 ncbi-blast+=2.12.0+ds-2 ncbi-blast+-legacy=2.12.0+ds-2 ncbi-data=6.1.20170106+dfsg1-9 ncurses-base=6.3-1 ncurses-bin=6.3-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 python3=3.9.8-1 python3-minimal=3.9.8-1 python3.9=3.9.9-2 python3.9-minimal=3.9.9-2 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 tzdata=2021e-1 util-linux=2.37.2-5 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220113T025801Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220113T025801Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220110T153158Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d microbiomeutil=20101212+dfsg1-5 && mkdir -p /build/microbiomeutil-Ajspdd && dpkg-source --no-check -x /*.dsc /build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1 && chown -R builduser:builduser /build/microbiomeutil-Ajspdd" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1641832194" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/microbiomeutil-Ajspdd /tmp/microbiomeutil-20101212+dfsg1-5a180i72l bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220110T153158Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.CtEuor4V41 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.CtEuor4V41 Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-5). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220110T153158Z unstable/main amd64 libfakeroot amd64 1.26-1.2 [48.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220110T153158Z unstable/main amd64 fakeroot amd64 1.26-1.2 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (851 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4681 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1.2_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1.2) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1.2_amd64.deb ... Unpacking fakeroot (1.26-1.2) ... Setting up libfakeroot:amd64 (1.26-1.2) ... Setting up fakeroot (1.26-1.2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-2) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220113T025801Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220113T025801Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220110T153158Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.CtEuor4V41 Get:1 http://snapshot.notset.fr/archive/debian/20220113T025801Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220110T153158Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20220113T025801Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220113T025801Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220113T025801Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220113T025801Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220113T025801Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220113T025801Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20220113T025801Z bookworm/main Sources [11.7 MB] Get:4 http://snapshot.notset.fr/archive/debian/20220113T025801Z bookworm/main amd64 Packages [11.1 MB] Fetched 23.0 MB in 19s (1186 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.CtEuor4V41 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d microbiomeutil=20101212+dfsg1-5 && mkdir -p /build/microbiomeutil-Ajspdd && dpkg-source --no-check -x /*.dsc /build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1 && chown -R builduser:builduser /build/microbiomeutil-Ajspdd"' exec /tmp/mmdebstrap.CtEuor4V41 Reading package lists... NOTICE: 'microbiomeutil' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/microbiomeutil.git Please use: git clone https://salsa.debian.org/med-team/microbiomeutil.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1623 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220113T025801Z bookworm/main microbiomeutil 20101212+dfsg1-5 (dsc) [2409 B] Get:2 http://snapshot.notset.fr/archive/debian/20220113T025801Z bookworm/main microbiomeutil 20101212+dfsg1-5 (tar) [1610 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220113T025801Z bookworm/main microbiomeutil 20101212+dfsg1-5 (diff) [10.4 kB] Fetched 1623 kB in 1s (1234 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'microbiomeutil_20101212+dfsg1-5.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting microbiomeutil in /build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1 dpkg-source: info: unpacking microbiomeutil_20101212+dfsg1.orig.tar.xz dpkg-source: info: unpacking microbiomeutil_20101212+dfsg1-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_perl_interpreter.patch dpkg-source: info: applying find_relocated_resources.patch dpkg-source: info: applying find_relocated_libraries.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying enable_tests_in_local_dir.patch dpkg-source: info: applying cross.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1641832194" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.CtEuor4V41 dpkg-buildpackage: info: source package microbiomeutil dpkg-buildpackage: info: source version 20101212+dfsg1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' dh_auto_clean make -j10 clean make[2]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' X=`pwd`; \ for i in NAST-iEr ChimeraSlayer WigeoN RESOURCES; \ do echo '<<<' $i '>>>'; cd $X/$i; make clean; done <<< NAST-iEr >>> make[3]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/NAST-iEr' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd ./sample_data; make clean make[4]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/NAST-iEr/sample_data' rm -f tmp.* make[4]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/NAST-iEr/sample_data' rm -f NAST-iEr make[3]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/NAST-iEr' <<< ChimeraSlayer >>> make[3]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/ChimeraSlayer' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd ./sample_data; make clean make[4]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/ChimeraSlayer/sample_data' rm -f chims.NAST.* rm -f sample_DB.NAST.cidx rm -f sample_DB.fasta.* rm -f tmp.* rm -f formatdb.log make[4]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/ChimeraSlayer/sample_data' make[3]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/ChimeraSlayer' <<< WigeoN >>> make[3]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/WigeoN' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd ./sample_data; make clean make[4]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/WigeoN/sample_data' rm -f tmp.* rm -f chims.NAST.* make[4]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/WigeoN/sample_data' make[3]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/WigeoN' <<< RESOURCES >>> make[3]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/RESOURCES' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -f *fasta.* make[3]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/RESOURCES' make[2]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' rm -f RESOURCES/rRNA16S.gold.fasta.n* RESOURCES/*.cidx rm -f formatdb.log make[1]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' dh_clean debian/rules binary-indep dh binary-indep dh_update_autotools_config -i dh_autoreconf -i dh_auto_configure -i debian/rules override_dh_auto_build make[1]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' dh_auto_build make -j10 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' X=`pwd`; \ for i in NAST-iEr ChimeraSlayer WigeoN RESOURCES; \ do echo '<<<' $i '>>>'; cd $X/$i; make all; done <<< NAST-iEr >>> make[3]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/NAST-iEr' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now NAST-iEr.c -o NAST-iEr NAST-iEr.c: In function ‘main’: NAST-iEr.c:106:15: warning: implicit declaration of function ‘isprint’ [-Wimplicit-function-declaration] 106 | if (isprint (optopt)) { | ^~~~~~~ NAST-iEr.c:5:1: note: include ‘’ or provide a declaration of ‘isprint’ 4 | #include +++ |+#include 5 | make[3]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/NAST-iEr' <<< ChimeraSlayer >>> make[3]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/ChimeraSlayer' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/ChimeraSlayer' <<< WigeoN >>> make[3]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/WigeoN' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/WigeoN' <<< RESOURCES >>> make[3]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/RESOURCES' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/RESOURCES' make[2]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' #Pre-make indexes for ChimeraSlayer, otherwise it tries to write them #to the non-writeable dir on first run and blows up formatdb -p F -i RESOURCES/rRNA16S.gold.fasta 2>/dev/null Building a new DB, current time: 03/17/2022 05:19:07 New DB name: /build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/RESOURCES/rRNA16S.gold.fasta New DB title: RESOURCES/rRNA16S.gold.fasta Sequence type: Nucleotide Keep MBits: T Maximum file size: 1000000000B Adding sequences from FASTA; added 5181 sequences in 0.296925 seconds. cdbfasta -C RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta 5181 entries from file RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta were indexed in file RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta.cidx make[1]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' dh: command-omitted: The call to "debian/rules override_dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -i dh_auto_install -i debian/rules override_dh_install make[1]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' dh_install -XMakefile -Xsample_data -XLICENSE -XNAST-iEr.c find debian -name '*.pl' -o -name '*.pm' | xargs sed -i 's|/usr/bin/env perl|/usr/bin/perl|g' make[1]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' dh_installdocs -i dh_installchangelogs -i debian/rules override_dh_installexamples make[1]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' dh_installexamples for mod in ChimeraSlayer NAST-iEr WigeoN ; do \ mkdir -p /build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/${mod} ; \ cp -a ${mod}/sample_data/* /build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/${mod} ; \ sed -i -e "s?../${mod}?${mod}?" \ -e "s?^.*\(/util/show_malign_no_gap.pl\)?/usr/lib/NAST-iEr\1?" \ -e "s?^.*\(/run_NAST-iEr.pl\)?/usr/lib/NAST-iEr\1?" \ -e "s?^.*\(ChimeraSlayer.pl\)?/usr/lib/ChimeraSlayer/\1?" \ -e "s?^.*\(/run_WigeoN.pl\)?/usr/lib/WigeoN\1?" \ /build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/${mod}/runMe.sh ; \ done sed -i '1i #!/bin/sh' /build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/WigeoN/runMe.sh make[1]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' dh_installman -i dh_perl -i dh_link -i dh_strip_nondeterminism -i dh_compress -i debian/rules override_dh_fixperms make[1]: Entering directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' dh_fixperms find debian -type f -name '*.pm' -print0 | xargs -0r chmod a-x find debian -type f -name 'genus_counter.pl' -print0 | xargs -0r chmod a+x make[1]: Leaving directory '/build/microbiomeutil-Ajspdd/microbiomeutil-20101212+dfsg1' dh_missing -i dh_installdeb -i dh_gencontrol -i dpkg-gencontrol: warning: package chimeraslayer: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package microbiomeutil-data: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package wigeon: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'microbiomeutil' in '../microbiomeutil_20101212+dfsg1-5_all.deb'. dpkg-deb: building package 'wigeon' in '../wigeon_20101212+dfsg1-5_all.deb'. dpkg-deb: building package 'microbiomeutil-data' in '../microbiomeutil-data_20101212+dfsg1-5_all.deb'. dpkg-deb: building package 'chimeraslayer' in '../chimeraslayer_20101212+dfsg1-5_all.deb'. dpkg-genbuildinfo --build=all -O../microbiomeutil_20101212+dfsg1-5_all.buildinfo dpkg-genchanges --build=all -O../microbiomeutil_20101212+dfsg1-5_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/microbiomeutil-Ajspdd /tmp/microbiomeutil-20101212+dfsg1-5a180i72l I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.CtEuor4V41... I: success in 423.3239 seconds md5: chimeraslayer_20101212+dfsg1-5_all.deb: OK md5: Value of 'md5' differs for microbiomeutil-data_20101212+dfsg1-5_all.deb md5: Size differs for microbiomeutil-data_20101212+dfsg1-5_all.deb md5: microbiomeutil_20101212+dfsg1-5_all.deb: OK md5: wigeon_20101212+dfsg1-5_all.deb: OK sha1: chimeraslayer_20101212+dfsg1-5_all.deb: OK sha1: Value of 'sha1' differs for microbiomeutil-data_20101212+dfsg1-5_all.deb sha1: Size differs for microbiomeutil-data_20101212+dfsg1-5_all.deb sha1: microbiomeutil_20101212+dfsg1-5_all.deb: OK sha1: wigeon_20101212+dfsg1-5_all.deb: OK sha256: chimeraslayer_20101212+dfsg1-5_all.deb: OK sha256: Value of 'sha256' differs for microbiomeutil-data_20101212+dfsg1-5_all.deb sha256: Size differs for microbiomeutil-data_20101212+dfsg1-5_all.deb sha256: microbiomeutil_20101212+dfsg1-5_all.deb: OK sha256: wigeon_20101212+dfsg1-5_all.deb: OK Checksums: FAIL Cannot generate diffoscope for microbiomeutil-data_20101212+dfsg1-5_all.deb: RetryError[]