Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/metabat/metabat_2.15-3_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/metabat-2.15-34mzd5iyu/metabat_2.15-3_amd64.buildinfo Get source package info: metabat=2.15-3 Source URL: http://snapshot.notset.fr/mr/package/metabat/2.15-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 binutils=2.35.1-3 binutils-common=2.35.1-3 binutils-x86-64-linux-gnu=2.35.1-3 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 cmake=3.18.4-1 cmake-data=3.18.4-1 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-19 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.39-3 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.0-19 gcc=4:10.2.0-1 gcc-10=10.2.0-19 gcc-10-base=10.2.0-19 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 icu-devtools=67.1-4 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libasan6=10.2.0-19 libatomic1=10.2.0-19 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-3 libblkid1=2.36.1-2 libboost-filesystem-dev=1.71.0.3 libboost-filesystem1.71-dev=1.71.0-7+b1 libboost-filesystem1.71.0=1.71.0-7+b1 libboost-graph-dev=1.71.0.3 libboost-graph1.71-dev=1.71.0-7+b1 libboost-graph1.71.0=1.71.0-7+b1 libboost-iostreams-dev=1.71.0.3 libboost-iostreams1.71-dev=1.71.0-7+b1 libboost-iostreams1.71.0=1.71.0-7+b1 libboost-program-options-dev=1.71.0.3 libboost-program-options1.71-dev=1.71.0-7+b1 libboost-program-options1.71.0=1.71.0-7+b1 libboost-regex1.71-dev=1.71.0-7+b1 libboost-regex1.71.0=1.71.0-7+b1 libboost-serialization-dev=1.71.0.3 libboost-serialization1.71-dev=1.71.0-7+b1 libboost-serialization1.71.0=1.71.0-7+b1 libboost-system-dev=1.71.0.3 libboost-system1.71-dev=1.71.0-7+b1 libboost-system1.71.0=1.71.0-7+b1 libboost-test1.71-dev=1.71.0-7+b1 libboost-test1.71.0=1.71.0-7+b1 libboost1.71-dev=1.71.0-7+b1 libbrotli1=1.0.9-2+b1 libbz2-1.0=1.0.8-4 libc-bin=2.31-5 libc-dev-bin=2.31-5 libc6=2.31-5 libc6-dev=2.31-5 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.0-19 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-3 libctf0=2.35.1-3 libcurl3-gnutls=7.72.0-1 libcurl4=7.72.0-1 libcurl4-gnutls-dev=7.72.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdeflate-dev=1.6-1 libdeflate0=1.6-1 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.0-19 libgcc-s1=10.2.0-19 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libglib2.0-0=2.66.3-2 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.6.15-4 libgomp1=10.2.0-19 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libhogweed6=3.6-2 libhts-dev=1.11-2 libhts3=1.11-2 libicu-dev=67.1-4 libicu67=67.1-4 libidn2-0=2.3.0-4 libisl23=0.23-1 libitm1=10.2.0-19 libjsoncpp1=1.7.4-3.1 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libldap-2.4-2=2.4.56+dfsg-1 liblsan0=10.2.0-19 liblz4-1=1.9.2-2 liblzma-dev=5.2.4-1+b1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-1 libncursesw6=6.2+20201114-1 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libprocps8=2:3.3.16-5 libpsl5=0.21.0-1.1 libpython3-stdlib=3.9.0-3 libpython3.9-minimal=3.9.1~rc1-2 libpython3.9-stdlib=3.9.1~rc1-2 libquadmath0=10.2.0-19 libreadline8=8.1~rc3-1 librhash0=1.4.0-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsigsegv2=2.12-2 libsmartcols1=2.36.1-2 libsqlite3-0=3.34.0-1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-19 libstdc++6=10.2.0-19 libsub-override-perl=0.09-2 libsystemd0=246.6-5 libtasn1-6=4.16.0-2 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-19 libubsan1=10.2.0-19 libuchardet0=0.0.7-1 libudev1=246.6-5 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libuv1=1.40.0-1 libxml2=2.9.10+dfsg-6.3 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 pkg-config=0.29.2-1 po-debconf=1.0.21 procps=2:3.3.16-5 python3=3.9.0-3 python3-minimal=3.9.0-3 python3.9=3.9.1~rc1-2 python3.9-minimal=3.9.1~rc1-2 readline-common=8.1~rc3-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020d-1 util-linux=2.36.1-2 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210120T210607Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201202T205335Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d metabat=2.15-3 && mkdir -p /build/metabat-CFg8rf && dpkg-source --no-check -x /*.dsc /build/metabat-CFg8rf/metabat-2.15 && chown -R builduser:builduser /build/metabat-CFg8rf" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/metabat-CFg8rf/metabat-2.15 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607200834" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/metabat-CFg8rf /tmp/metabat-2.15-34mzd5iyu bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.z_2MNbQXxK as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.z_2MNbQXxK Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (843 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4614 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210120T210607Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201202T205335Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.z_2MNbQXxK Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210120T210607Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210120T210607Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210120T210607Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210120T210607Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210120T210607Z unstable/main amd64 Packages [11.7 MB] Fetched 34.4 MB in 30s (1159 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.z_2MNbQXxK I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d metabat=2.15-3 && mkdir -p /build/metabat-CFg8rf && dpkg-source --no-check -x /*.dsc /build/metabat-CFg8rf/metabat-2.15 && chown -R builduser:builduser /build/metabat-CFg8rf"' exec /tmp/mmdebstrap.z_2MNbQXxK Reading package lists... NOTICE: 'metabat' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metabat.git Please use: git clone https://salsa.debian.org/med-team/metabat.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 207 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main metabat 2.15-3 (dsc) [2192 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main metabat 2.15-3 (tar) [196 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main metabat 2.15-3 (diff) [9692 B] Fetched 207 kB in 0s (1308 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'metabat_2.15-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting metabat in /build/metabat-CFg8rf/metabat-2.15 dpkg-source: info: unpacking metabat_2.15.orig.tar.gz dpkg-source: info: unpacking metabat_2.15-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/metabat-CFg8rf/metabat-2.15 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607200834" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.z_2MNbQXxK dpkg-buildpackage: info: source package metabat dpkg-buildpackage: info: source version 2.15-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 10.2.0 -- The CXX compiler identification is GNU 10.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Installing None MetaBAT into /usr -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for module 'htslib' -- Found htslib, version 1.11-2 -- Found Boost: /usr/include (found suitable version "1.71.0", minimum required is "1.55.0") found components: program_options filesystem system graph serialization iostreams regex -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") Using OpenMP Boost cmake dir: Boost include: /usr/include Boost libraries:/usr/lib/x86_64-linux-gnu/libboost_program_options.a/usr/lib/x86_64-linux-gnu/libboost_filesystem.a/usr/lib/x86_64-linux-gnu/libboost_system.a/usr/lib/x86_64-linux-gnu/libboost_graph.a/usr/lib/x86_64-linux-gnu/libboost_serialization.a/usr/lib/x86_64-linux-gnu/libboost_iostreams.a/usr/lib/x86_64-linux-gnu/libboost_regex.a Boost lib ver:1_71 Boost lib dir:/usr/lib/x86_64-linux-gnu -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu dh_auto_build -a cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/metabat-CFg8rf/metabat-2.15 -B/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/CMakeFiles /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/contigOverlaps.dir/build.make src/CMakeFiles/contigOverlaps.dir/depend make -f src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build.make src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/depend make -f src/CMakeFiles/metabat2.dir/build.make src/CMakeFiles/metabat2.dir/depend make -f src/CMakeFiles/metabat1.dir/build.make src/CMakeFiles/metabat1.dir/depend make[3]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' cd /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/metabat-CFg8rf/metabat-2.15 /build/metabat-CFg8rf/metabat-2.15/src /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src/CMakeFiles/contigOverlaps.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' cd /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/metabat-CFg8rf/metabat-2.15 /build/metabat-CFg8rf/metabat-2.15/src /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' cd /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/metabat-CFg8rf/metabat-2.15 /build/metabat-CFg8rf/metabat-2.15/src /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src/CMakeFiles/metabat2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' cd /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/metabat-CFg8rf/metabat-2.15 /build/metabat-CFg8rf/metabat-2.15/src /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src/CMakeFiles/metabat1.dir/DependInfo.cmake --color= Scanning dependencies of target metabat1 Scanning dependencies of target contigOverlaps make[3]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/metabat1.dir/build.make src/CMakeFiles/metabat1.dir/build make[3]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/contigOverlaps.dir/build.make src/CMakeFiles/contigOverlaps.dir/build make[3]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' Scanning dependencies of target jgi_summarize_bam_contig_depths make[3]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build.make src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build Scanning dependencies of target metabat2 make[3]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' make -f src/CMakeFiles/metabat2.dir/build.make src/CMakeFiles/metabat2.dir/build make[3]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' [ 12%] Building CXX object src/CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o cd /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu -I/build/metabat-CFg8rf/metabat-2.15 -g -O2 -fdebug-prefix-map=/build/metabat-CFg8rf/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -o CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -c /build/metabat-CFg8rf/metabat-2.15/src/contigOverlaps.cpp [ 25%] Building CXX object src/CMakeFiles/metabat1.dir/metabat1.cpp.o cd /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu -I/build/metabat-CFg8rf/metabat-2.15 -g -O2 -fdebug-prefix-map=/build/metabat-CFg8rf/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -o CMakeFiles/metabat1.dir/metabat1.cpp.o -c /build/metabat-CFg8rf/metabat-2.15/src/metabat1.cpp [ 37%] Building CXX object src/CMakeFiles/metabat2.dir/metabat2.cpp.o cd /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu -I/build/metabat-CFg8rf/metabat-2.15 -g -O2 -fdebug-prefix-map=/build/metabat-CFg8rf/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -o CMakeFiles/metabat2.dir/metabat2.cpp.o -c /build/metabat-CFg8rf/metabat-2.15/src/metabat2.cpp [ 50%] Building CXX object src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o cd /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu -I/build/metabat-CFg8rf/metabat-2.15 -g -O2 -fdebug-prefix-map=/build/metabat-CFg8rf/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -o CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o -c /build/metabat-CFg8rf/metabat-2.15/src/jgi_summarize_bam_contig_depths.cpp In file included from /build/metabat-CFg8rf/metabat-2.15/src/jgi_summarize_bam_contig_depths.h:35, from /build/metabat-CFg8rf/metabat-2.15/src/jgi_summarize_bam_contig_depths.cpp:5: /build/metabat-CFg8rf/metabat-2.15/src/BamUtils.h: In member function ‘bam1_t* BamCache::getBam(const bam1_t*)’: /build/metabat-CFg8rf/metabat-2.15/src/BamUtils.h:98:13: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 98 | bam_copy1(bam, copy); | ~~~~~~~~~^~~~~~~~~~~ In file included from /build/metabat-CFg8rf/metabat-2.15/src/jgi_summarize_bam_contig_depths.h:35, from /build/metabat-CFg8rf/metabat-2.15/src/jgi_summarize_bam_contig_depths.cpp:5: /build/metabat-CFg8rf/metabat-2.15/src/BamUtils.h: In member function ‘NameBamMap::iterator NameBamMap::insert(std::string, const bam1_t*, bool)’: /build/metabat-CFg8rf/metabat-2.15/src/BamUtils.h:271:14: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 271 | bam_copy1(existing->second, bam); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/metabat-CFg8rf/metabat-2.15/src/jgi_summarize_bam_contig_depths.h:35, from /build/metabat-CFg8rf/metabat-2.15/src/jgi_summarize_bam_contig_depths.cpp:5: /build/metabat-CFg8rf/metabat-2.15/src/BamUtils.h: In static member function ‘static int BamUtils::_findPairInFile(const bam1_t*, void*)’: /build/metabat-CFg8rf/metabat-2.15/src/BamUtils.h:582:13: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 582 | bam_copy1(data->mate, orphan); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 62%] Linking CXX executable contigOverlaps cd /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/contigOverlaps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/metabat-CFg8rf/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -o contigOverlaps -lhts /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libboost_program_options.a /usr/lib/x86_64-linux-gnu/libboost_filesystem.a /usr/lib/x86_64-linux-gnu/libboost_system.a /usr/lib/x86_64-linux-gnu/libboost_graph.a /usr/lib/x86_64-linux-gnu/libboost_serialization.a /usr/lib/x86_64-linux-gnu/libboost_iostreams.a /usr/lib/x86_64-linux-gnu/libboost_regex.a make[3]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' [ 62%] Built target contigOverlaps [ 75%] Linking CXX executable jgi_summarize_bam_contig_depths cd /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/jgi_summarize_bam_contig_depths.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/metabat-CFg8rf/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o -o jgi_summarize_bam_contig_depths -lhts /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libboost_program_options.a /usr/lib/x86_64-linux-gnu/libboost_filesystem.a /usr/lib/x86_64-linux-gnu/libboost_system.a /usr/lib/x86_64-linux-gnu/libboost_graph.a /usr/lib/x86_64-linux-gnu/libboost_serialization.a /usr/lib/x86_64-linux-gnu/libboost_iostreams.a /usr/lib/x86_64-linux-gnu/libboost_regex.a make[3]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' [ 75%] Built target jgi_summarize_bam_contig_depths [ 87%] Linking CXX executable metabat2 cd /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/metabat2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/metabat-CFg8rf/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/metabat2.dir/metabat2.cpp.o -o metabat2 -lhts /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libboost_program_options.a /usr/lib/x86_64-linux-gnu/libboost_filesystem.a /usr/lib/x86_64-linux-gnu/libboost_system.a /usr/lib/x86_64-linux-gnu/libboost_graph.a /usr/lib/x86_64-linux-gnu/libboost_serialization.a /usr/lib/x86_64-linux-gnu/libboost_iostreams.a /usr/lib/x86_64-linux-gnu/libboost_regex.a make[3]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' [ 87%] Built target metabat2 [100%] Linking CXX executable metabat1 cd /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/metabat1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/metabat-CFg8rf/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/metabat1.dir/metabat1.cpp.o -o metabat1 -lhts /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libboost_program_options.a /usr/lib/x86_64-linux-gnu/libboost_filesystem.a /usr/lib/x86_64-linux-gnu/libboost_system.a /usr/lib/x86_64-linux-gnu/libboost_graph.a /usr/lib/x86_64-linux-gnu/libboost_serialization.a /usr/lib/x86_64-linux-gnu/libboost_iostreams.a /usr/lib/x86_64-linux-gnu/libboost_regex.a make[3]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' [100%] Built target metabat1 make[2]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/metabat-CFg8rf/metabat-2.15' cp -a test/contigs_depth.txt obj-x86_64-linux-gnu dh_auto_test cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 make[2]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j4 Test project /build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu Start 1: test_depths Start 2: test_metabat1 Start 3: test_metabat2 1/3 Test #1: test_depths ...................... Passed 1.81 sec 2/3 Test #2: test_metabat1 .................... Passed 28.20 sec 3/3 Test #3: test_metabat2 .................... Passed 32.88 sec 100% tests passed, 0 tests failed out of 3 Total Test time (real) = 32.91 sec make[2]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/metabat-CFg8rf/metabat-2.15/debian/metabat AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/metabat-CFg8rf/metabat-2.15 -B/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/metabat-CFg8rf/metabat-2.15/debian/metabat/usr/bin/runMetaBat.sh -- Installing: /build/metabat-CFg8rf/metabat-2.15/debian/metabat/usr/bin/merge_depths.pl -- Installing: /build/metabat-CFg8rf/metabat-2.15/debian/metabat/usr/bin/aggregateBinDepths.pl -- Installing: /build/metabat-CFg8rf/metabat-2.15/debian/metabat/usr/bin/aggregateContigOverlapsByBin.pl CMake Error: failed to create symbolic link '/usr/bin/metabat': permission denied -- Installing: /build/metabat-CFg8rf/metabat-2.15/debian/metabat/usr/bin/metabat1 -- Installing: /build/metabat-CFg8rf/metabat-2.15/debian/metabat/usr/bin/metabat2 -- Installing: /build/metabat-CFg8rf/metabat-2.15/debian/metabat/usr/bin/jgi_summarize_bam_contig_depths -- Installing: /build/metabat-CFg8rf/metabat-2.15/debian/metabat/usr/bin/contigOverlaps make[1]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/metabat-CFg8rf/metabat-2.15' dh_install for perlscript in `grep -l '#!/usr/bin/env \+perl' debian/*/usr/bin/*` ; do \ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory '/build/metabat-CFg8rf/metabat-2.15' dh_installman --language=C make[1]: Leaving directory '/build/metabat-CFg8rf/metabat-2.15' dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package metabat: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package metabat: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'metabat-dbgsym' in '../metabat-dbgsym_2.15-3_amd64.deb'. dpkg-deb: building package 'metabat' in '../metabat_2.15-3_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../metabat_2.15-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/metabat-CFg8rf /tmp/metabat-2.15-34mzd5iyu I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.z_2MNbQXxK... I: success in 726.9829 seconds md5: metabat-dbgsym_2.15-3_amd64.deb: OK md5: metabat_2.15-3_amd64.deb: OK sha1: metabat-dbgsym_2.15-3_amd64.deb: OK sha1: metabat_2.15-3_amd64.deb: OK sha256: metabat-dbgsym_2.15-3_amd64.deb: OK sha256: metabat_2.15-3_amd64.deb: OK Checksums: OK