Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/meep-openmpi/meep-openmpi_1.17.1-2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/meep-openmpi-1.17.1-20yjyviph/meep-openmpi_1.17.1-2_amd64.buildinfo Get source package info: meep-openmpi=1.17.1-2 Source URL: http://snapshot.notset.fr/mr/package/meep-openmpi/1.17.1-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-6 bsdutils=1:2.36.1-6 build-essential=12.9 bzip2=1.0.8-4 chrpath=0.16-2+b1 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.2 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.10.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210126-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 gfortran=4:10.2.1-1 gfortran-10=10.2.1-6 grep=3.6-1 groff-base=1.22.4-6 guile-2.2=2.2.7+1-5.4 guile-2.2-dev=2.2.7+1-5.4 guile-2.2-libs=2.2.7+1-5.4 guile-3.0-libs=3.0.4-3 gzip=1.10-2 hostname=3.23 ibverbs-providers=33.1-1 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libaec-dev=1.0.4-1 libaec0=1.0.4-1 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblas-dev=3.9.0-3 libblas3=3.9.0-3 libblkid1=2.36.1-6 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcbor0=0.5.0+dfsg-2 libcc1-0=10.2.1-6 libcom-err2=1.45.7-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libctl-dev=4.5.0-9 libctl7=4.5.0-9 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.256 libdebhelper-perl=13.3.2 libdpkg-perl=1.20.7.1 libedit2=3.1-20191231-2+b1 libelf1=0.182-3 libevent-2.1-7=2.1.12-stable-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-dev=2.1.12-stable-1 libevent-extra-2.1-7=2.1.12-stable-1 libevent-openssl-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libfabric1=1.11.0-2 libffi7=3.3-5 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfido2-1=1.6.0-2 libfile-stripnondeterminism-perl=1.10.0-1 libgc-dev=1:8.0.4-3 libgc1=1:8.0.4-3 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgdsii-dev=0.2+ds.1-1 libgdsii0=0.2+ds.1-1 libgfortran-10-dev=10.2.1-6 libgfortran5=10.2.1-6 libglib2.0-0=2.66.4-3 libgmp-dev=2:6.2.1+dfsg-1 libgmp10=2:6.2.1+dfsg-1 libgmpxx4ldbl=2:6.2.1+dfsg-1 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgsl-dev=2.6+dfsg-2 libgsl25=2.6+dfsg-2 libgslcblas0=2.6+dfsg-2 libgssapi-krb5-2=1.18.3-4 libharminv-dev=1.4.1-2+b1 libharminv3=1.4.1-2+b1 libhdf5-103-1=1.10.6+repack-2 libhdf5-hl-100=1.10.6+repack-2 libhdf5-openmpi-103-1=1.10.6+repack-2 libhdf5-openmpi-cpp-103-1=1.10.6+repack-2 libhdf5-openmpi-dev=1.10.6+repack-2 libhdf5-openmpi-fortran-102=1.10.6+repack-2 libhdf5-openmpi-hl-100=1.10.6+repack-2 libhdf5-openmpi-hl-cpp-100=1.10.6+repack-2 libhdf5-openmpi-hl-fortran-100=1.10.6+repack-2 libhwloc-dev=2.4.1~rc1+dfsg-1 libhwloc-plugins=2.4.1~rc1+dfsg-1 libhwloc15=2.4.1~rc1+dfsg-1 libibverbs-dev=33.1-1 libibverbs1=33.1-1 libicu67=67.1-6 libisl23=0.23-1 libitm1=10.2.1-6 libjpeg-dev=1:2.0.5-2 libjpeg62-turbo=1:2.0.5-2 libjpeg62-turbo-dev=1:2.0.5-2 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui=1.12.1+dfsg-8 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack-dev=3.9.0-3 liblapack3=3.9.0-3 liblsan0=10.2.1-6 libltdl-dev=2.4.6-15 libltdl7=2.4.6-15 liblz4-1=1.9.3-1 liblzf1=3.6-3 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-6 libmpc3=1.2.0-1 libmpdec3=2.5.1-1 libmpfr6=4.1.0-3 libncurses-dev=6.2+20201114-2 libncurses5-dev=6.2+20201114-2 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnl-3-200=3.4.0-1+b1 libnl-3-dev=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnl-route-3-dev=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma-dev=2.0.12-1+b1 libnuma1=2.0.12-1+b1 libopenmpi-dev=4.1.0-7 libopenmpi3=4.1.0-7 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libpmix-dev=4.0.0-4 libpmix2=4.0.0-4 libpsm-infinipath1=3.3+20.604758e7-6.1 libpsm2-2=11.2.185-1 libpython3-dev=3.9.1-1 libpython3-stdlib=3.9.1-1 libpython3.9=3.9.1-3 libpython3.9-dev=3.9.1-3 libpython3.9-minimal=3.9.1-3 libpython3.9-stdlib=3.9.1-3 libquadmath0=10.2.1-6 librdmacm1=33.1-1 libreadline-dev=8.1-1 libreadline8=8.1-1 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsepol1=3.1-1 libsigsegv2=2.13-1 libsmartcols1=2.36.1-6 libsqlite3-0=3.34.1-1 libssl1.1=1.1.1i-3 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.2-5 libsz2=1.0.4-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libucx0=1.10.0~rc1-7 libudev1=247.2-5 libunistring2=0.9.10-4 libuuid1=2.36.1-6 libx11-6=2:1.7.0-2 libx11-data=2:1.7.0-2 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1.1 libxml2=2.9.10+dfsg-6.3+b1 libxnvctrl0=460.32.03-1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.12-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 ocl-icd-libopencl1=2.2.14-2 openmpi-bin=4.1.0-7 openmpi-common=4.1.0-7 openssh-client=1:8.4p1-3 passwd=1:4.8.1-1 patch=2.7.6-7 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 python3=3.9.1-1 python3-dev=3.9.1-1 python3-distutils=3.9.1-2 python3-h5py=2.10.0-9 python3-h5py-serial=2.10.0-9+b2 python3-lib2to3=3.9.1-2 python3-minimal=3.9.1-1 python3-numpy=1:1.19.5-1 python3-pkg-resources=51.3.3-1 python3-six=1.15.0-2 python3.9=3.9.1-3 python3.9-dev=3.9.1-3 python3.9-minimal=3.9.1-3 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 swig=4.0.2-1 swig4.0=4.0.2-1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2021a-1 util-linux=2.36.1-6 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210203T203559Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210131T204918Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d meep-openmpi=1.17.1-2 && mkdir -p /build/meep-openmpi-IYxmPf && dpkg-source --no-check -x /*.dsc /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1 && chown -R builduser:builduser /build/meep-openmpi-IYxmPf" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612307257" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/meep-openmpi-IYxmPf /tmp/meep-openmpi-1.17.1-20yjyviph bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210131T204918Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.O0yjwbN7J0 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.O0yjwbN7J0 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210131T204918Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210131T204918Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1113 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4661 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210203T203559Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210131T204918Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.O0yjwbN7J0 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210203T203559Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210131T204918Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210203T203559Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210203T203559Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210203T203559Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210203T203559Z unstable/main amd64 Packages [11.6 MB] Fetched 34.4 MB in 30s (1158 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.O0yjwbN7J0 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d meep-openmpi=1.17.1-2 && mkdir -p /build/meep-openmpi-IYxmPf && dpkg-source --no-check -x /*.dsc /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1 && chown -R builduser:builduser /build/meep-openmpi-IYxmPf"' exec /tmp/mmdebstrap.O0yjwbN7J0 Reading package lists... NOTICE: 'meep-openmpi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/alteholz/meep-openmpi.git Please use: git clone https://salsa.debian.org/alteholz/meep-openmpi.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 29.7 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main meep-openmpi 1.17.1-2 (dsc) [2513 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main meep-openmpi 1.17.1-2 (tar) [29.6 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main meep-openmpi 1.17.1-2 (diff) [9532 B] Fetched 29.7 MB in 23s (1284 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'meep-openmpi_1.17.1-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting meep-openmpi in /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1 dpkg-source: info: unpacking meep-openmpi_1.17.1.orig.tar.gz dpkg-source: info: unpacking meep-openmpi_1.17.1-2.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612307257" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.O0yjwbN7J0 dpkg-buildpackage: info: source package meep-openmpi dpkg-buildpackage: info: source version 1.17.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Thorsten Alteholz dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf debian/rules override_dh_clean make[1]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' # we do not need this anymore rm -f tests/latest_output dh_clean make[1]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' debian/rules build-arch dh build-arch --with autoreconf dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:24: installing './compile' configure.ac:68: installing './config.guess' configure.ac:68: installing './config.sub' configure.ac:12: installing './install-sh' configure.ac:12: installing './missing' libpympb/Makefile.am: installing './depcomp' python/Makefile.am:213: installing './py-compile' parallel-tests: installing './test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' F77=gfortran dh_auto_configure -- --host=x86_64-linux-gnu --build=x86_64-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --with-libctl=/usr/share/libctl --with-gcc-arch=no --enable-shared --with-pic --enable-cxx --with-mpi=yes --enable-maintainer-mode ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu --build=x86_64-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --with-libctl=/usr/share/libctl --with-gcc-arch=no --enable-shared --with-pic --enable-cxx --with-mpi=yes --enable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to accept ISO C89... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-linux-gnu-gcc... none checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking dependency style of x86_64-linux-gnu-g++... none checking for mpic++... mpic++ checking for MPI_Init... yes checking for mpi.h... yes checking for extra flag needed to combine stdio.h and mpi.h... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for C++ compiler vendor... gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-linux-gnu-objdump... x86_64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-linux-gnu-ar... x86_64-linux-gnu-ar checking for archiver @FILE support... @ checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for x86_64-linux-gnu-ranlib... x86_64-linux-gnu-ranlib checking command to parse /usr/bin/x86_64-linux-gnu-nm -B output from x86_64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... x86_64-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-gcc static flag -static works... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... mpic++ -E checking for ld used by mpic++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the mpic++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for mpic++ option to produce PIC... -fPIC -DPIC checking if mpic++ PIC flag -fPIC -DPIC works... yes checking if mpic++ static flag -static works... no checking if mpic++ supports -c -o file.o... yes checking if mpic++ supports -c -o file.o... (cached) yes checking whether the mpic++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for latex2html... no configure: WARNING: Cannot find latex2html in your path! checking for sin in -lm... yes checking for fftw_plan_dft_1d in -lfftw3... yes checking for x86_64-linux-gnu-g77... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for sgemm_... no checking for ATL_xerbla in -latlas... no checking for sgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for sgemm_ in -lmkl... no checking for sgemm_... (cached) no checking for sgemm_ in -lcxml... no checking for sgemm_ in -ldxml... no checking for sgemm_ in -lscs... no checking for sgemm_ in -lcomplib.sgimath... no checking for sgemm_ in -lblas... (cached) yes checking for sgemm_ in -lessl... no checking for sgemm_ in -lblas... (cached) yes checking for cheev_... no checking for cheev_ in -llapack... yes checking for pkg-config... /usr/bin/pkg-config checking for harminv >= 1.1... yes checking HARMINV_CFLAGS... checking HARMINV_LIBS... -lharminv checking mpb.h usability... no checking mpb.h presence... no checking for mpb.h... no checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_sf_bessel_Jn in -lgsl... yes checking for deflate in -lz... yes checking for H5Pcreate in -lhdf5... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Pset_mpi... no checking for H5Pset_fapl_mpio... yes checking for mpirun... mpirun checking for guile-config... guile-config checking if linking to guile works... yes checking libguile.h usability... yes checking libguile.h presence... yes checking for libguile.h... yes checking guile/gh.h usability... no checking guile/gh.h presence... no checking for guile/gh.h... no checking for scm_make_smob_type... yes checking for SCM_SMOB_PREDICATE... no checking for SCM_SMOB_DATA... no checking for SCM_NEWSMOB... no checking how to activate readline in Guile... ice-9 readline checking for libctl dir... /usr/share/libctl checking for gen-ctl-io... gen-ctl-io checking for ctl_get_vector3 in -lctl... yes checking ctl.h usability... yes checking ctl.h presence... yes checking for ctl.h... yes checking whether libctl version is at least 4.2.0... ok checking for libctl_quiet feature... yes checking for vector3_dot in -lctlgeom... yes checking libGDSII.h usability... yes checking libGDSII.h presence... yes checking for libGDSII.h... yes checking for libGDSIIExists in -lGDSII... yes checking for libGDSII::GetLayers... no checking for feenableexcept... yes checking whether feenableexcept declaration is usable... yes checking whether to catch and ignore SIGFPE signals... no checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for BSDgettimeofday... no checking for gettimeofday... yes checking for cblas_ddot... yes checking for cblas_daxpy... yes checking for jn... yes checking for C/C++ restrict keyword... __restrict checking for swig... swig checking for python... no checking for python2... no checking for python3... /usr/bin/python3 checking for python version... 3.9 checking for python platform... linux checking for python script directory... ${prefix}/lib/python3.9/site-packages checking for python extension module directory... ${exec_prefix}/lib/python3.9/site-packages checking for Python include directory... /usr/include/python3.9 checking Python.h usability... yes checking Python.h presence... yes checking for Python.h... yes checking for Numpy include directory... /usr/lib/python3/dist-packages/numpy/core/include checking for numpy/arrayobject.h... yes checking for coverage module... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating scheme/Makefile config.status: creating scheme/meep.scm config.status: creating libpympb/Makefile config.status: creating python/Makefile config.status: creating Makefile config.status: creating meep-pkgconfig config.status: creating src/Makefile config.status: creating src/support/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' dh_auto_build -a make -j4 make[1]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' make all-recursive make[2]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' Making all in src make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make sphere_quad (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; sed 's/LOOP_OVER/S1LOOP_OVER/g' ../src/step_generic.cpp | sed 's/step_curl/step_curl_stride1/' | sed 's/step_update_EDHB/step_update_EDHB_stride1/' | sed 's/step_beta/step_beta_stride1/') > step_generic_stride1.cpp make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sphere-quad.o sphere-quad.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../src/sphere_quad) > sphere-quad.h make all-recursive make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' Making all in support make[5]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src/support' /bin/bash ../../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937ar.lo mt19937ar.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -c mt19937ar.c -fPIC -DPIC -o .libs/mt19937ar.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -c mt19937ar.c -fPIC -DPIC -o mt19937ar.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=link x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o libsupport.la mt19937ar.lo -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-ar cr .libs/libsupport.a .libs/mt19937ar.o libtool: link: x86_64-linux-gnu-ranlib .libs/libsupport.a libtool: link: ( cd ".libs" && rm -f "libsupport.la" && ln -s "../libsupport.la" "libsupport.la" ) make[5]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src/support' make[5]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array_slice.lo array_slice.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o anisotropic_averaging.lo anisotropic_averaging.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bands.lo bands.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o boundaries.lo boundaries.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o .libs/boundaries.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o .libs/bands.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o .libs/anisotropic_averaging.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o .libs/array_slice.o boundaries.cpp: In member function ‘meep::ivec meep::fields::ilattice_vector(meep::direction) const’: boundaries.cpp:69:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 69 | switch (d) { | ^~~~~~ boundaries.cpp:77:5: note: here 77 | case D3: | ^~~~ anisotropic_averaging.cpp: In function ‘meep::vec meep::sphere_pt(const meep::vec&, double, int, double&)’: anisotropic_averaging.cpp:39:19: warning: control reaches end of non-void function [-Wreturn-type] 39 | default: abort("unknown dimensions in sphere_pt\n"); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 In file included from meep.hpp:24, from boundaries.cpp:21: meep/vec.hpp: In member function ‘bool meep::fields::locate_component_point(meep::component*, meep::ivec*, std::complex*) const’: meep/vec.hpp:431:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bicgstab.lo bicgstab.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o .libs/bicgstab.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o array_slice.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o boundaries.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o bicgstab.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o anisotropic_averaging.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o casimir.lo casimir.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o .libs/casimir.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o cw_fields.lo cw_fields.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o .libs/cw_fields.o In file included from meep.hpp:24, from casimir.cpp:29: meep/vec.hpp: In member function ‘std::complex meep::fields::casimir_stress_dct_integral(meep::direction, meep::direction, double, double, double, meep::field_type, meep::volume, bool)’: meep/vec.hpp:430:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | case Z: return (component)(start_point + 4); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft.lo dft.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o casimir.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o .libs/dft.o In file included from meep.hpp:24, from meep_internals.hpp:19, from cw_fields.cpp:18: meep/vec.hpp: In function ‘void meep::fields_to_array(const meep::fields&, std::complex*)’: meep/vec.hpp:432:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ dft.cpp: In member function ‘cdouble meep::dft_chunk::process_dft_component(int, meep::direction*, meep::ivec, meep::ivec, int, meep::h5file*, double*, int, cdouble*, void*, void*, int, bool, meep::fields*)’: dft.cpp:749:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 749 | if ((num_freq < 0) || (num_freq > omega.size()-1)) | ~~~~~~~~~^~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft_ldos.lo dft_ldos.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o .libs/dft_ldos.o meep/vec.hpp: In function ‘void meep::array_to_fields(const std::complex*, meep::fields&)’: meep/vec.hpp:432:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o energy_and_flux.lo energy_and_flux.cpp meep/vec.hpp: In member function ‘bool meep::fields::solve_cw(double, int, std::complex, int, std::complex*, double, int)’: meep/vec.hpp:432:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o .libs/energy_and_flux.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o cw_fields.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o dft_ldos.o >/dev/null 2>&1 dft.cpp: In member function ‘void meep::fields::get_overlap(void*, void*, meep::dft_flux, int, cdouble*)’: dft.cpp:1246:57: warning: ‘*((void*)& cH +4)’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1246 | mode2_data, cE[1]); | ^ dft.cpp:1244:57: warning: ‘cH’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1244 | mode2_data, cE[0]); | ^ dft.cpp:1246:57: warning: ‘*((void*)& cE +4)’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1246 | mode2_data, cE[1]); | ^ dft.cpp:1244:57: warning: ‘cE’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1244 | mode2_data, cE[0]); | ^ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o energy_and_flux.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o fields.lo fields.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o dft.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o .libs/fields.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o loop_in_chunks.lo loop_in_chunks.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o .libs/loop_in_chunks.o fields.cpp: In member function ‘meep::volume meep::fields::total_volume() const’: fields.cpp:639:31: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 639 | v = v | S.transform(gv0, n); | ^ In file included from meep.hpp:24, from fields.cpp:23: meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5fields.lo h5fields.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5fields.cpp -fPIC -DPIC -o .libs/h5fields.o loop_in_chunks.cpp: In member function ‘void meep::fields::loop_in_chunks(meep::field_chunkloop, void*, const meep::volume&, meep::component, bool, bool)’: loop_in_chunks.cpp:425:44: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 425 | vS = S.transform(chunks[i]->v, sn); | ^ In file included from meep.hpp:24, from loop_in_chunks.cpp:22: meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ loop_in_chunks.cpp:434:82: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 434 | chunks[i]->gv.loc(Centered, chunks[i]->gv.ntot() - 1) + pad); | ^ In file included from meep.hpp:24, from loop_in_chunks.cpp:22: meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o fields.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5fields.cpp -fPIC -DPIC -o h5fields.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o loop_in_chunks.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5file.lo h5file.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5file.cpp -fPIC -DPIC -o .libs/h5file.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o initialize.lo initialize.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c initialize.cpp -fPIC -DPIC -o .libs/initialize.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o integrate.lo integrate.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate.cpp -fPIC -DPIC -o .libs/integrate.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o integrate2.lo integrate2.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o .libs/integrate2.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5file.cpp -fPIC -DPIC -o h5file.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c initialize.cpp -fPIC -DPIC -o initialize.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate.cpp -fPIC -DPIC -o integrate.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o monitor.lo monitor.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o .libs/monitor.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o integrate2.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mympi.lo mympi.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o .libs/mympi.o monitor.cpp: In member function ‘double meep::fields::get_field(meep::derived_component, const meep::vec&, bool) const’: monitor.cpp:123:19: warning: control reaches end of non-void function [-Wreturn-type] 123 | default: abort("unknown derived_component in get_field"); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o multilevel-atom.lo multilevel-atom.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o .libs/multilevel-atom.o monitor.cpp: In member function ‘std::complex meep::structure_chunk::get_chi1inv_at_pt(meep::component, meep::direction, int, double) const’: monitor.cpp:325:19: warning: ‘comp_list[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 325 | component cc = comp_list[com_it]; | ^~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o near2far.lo near2far.cpp In file included from /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2887, from mympi.cpp:32: /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o .libs/near2far.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o monitor.o >/dev/null 2>&1 mympi.cpp: In function ‘void meep::abort(const char*, ...)’: mympi.cpp:124:12: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 124 | vasprintf(&s, fmt, ap); | ~~~~~~~~~^~~~~~~~~~~~~ mympi.cpp: In function ‘void meep::_do_master_printf(FILE*, meep::meep_printf_callback_func, const char*, __va_list_tag*)’: mympi.cpp:596:16: warning: ignoring return value of ‘int vasprintf(char**, const char*, __va_list_tag*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 596 | vasprintf(&s, fmt, ap); | ~~~~~~~~~^~~~~~~~~~~~~ In file included from meep.hpp:24, from multilevel-atom.cpp:22: meep/vec.hpp: In member function ‘virtual void meep::multilevel_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const’: meep/vec.hpp:430:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | case Z: return (component)(start_point + 4); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ near2far.cpp: In member function ‘meep::dft_near2far meep::fields::add_dft_near2far(const meep::volume_list*, const double*, size_t, int)’: near2far.cpp:569:38: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 569 | everywhere = everywhere | where->v; | ^ In file included from meep.hpp:24, from meep_internals.hpp:19, from near2far.cpp:23: meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o multilevel-atom.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o mympi.o >/dev/null 2>&1 meep/vec.hpp: In function ‘void meep::greencyl(std::complex*, const meep::vec&, double, double, double, const meep::vec&, meep::component, std::complex, double, double)’: meep/vec.hpp:429:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 429 | case Y: return (component)(start_point + 1); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o output_directory.lo output_directory.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o .libs/output_directory.o near2far.cpp: In member function ‘meep::dft_near2far meep::fields::add_dft_near2far(const meep::volume_list*, const double*, size_t, int)’: near2far.cpp:626:42: warning: ‘fd[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 626 | component c = direction_component(i == 0 ? Ex : Hx, fd[j]); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o random.lo random.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o .libs/random.o output_directory.cpp: In function ‘const char* meep::make_output_directory(const char*, const char*)’: output_directory.cpp:117:35: warning: ‘-out’ directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] 117 | snprintf(outdirname, buflen, "%s-out", basename); | ^~~~ In file included from /usr/include/stdio.h:867, from output_directory.cpp:18: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 304 bytes into a destination of size 300 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:126:36: warning: ‘%s’ directive output may be truncated writing up to 299 bytes into a region of size between 0 and 299 [-Wformat-truncation=] 126 | snprintf(outsrcname, buflen, "%s/%s", outdirname, sourcename); | ^~ ~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from output_directory.cpp:18: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 2 and 600 bytes into a destination of size 300 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:122:39: warning: ‘-out-’ directive output may be truncated writing 5 bytes into a region of size between 1 and 300 [-Wformat-truncation=] 122 | snprintf(outdirname, buflen, "%s-out-%d", basename, i++); | ^~~~~ output_directory.cpp:122:36: note: directive argument in the range [0, 2147483647] 122 | snprintf(outdirname, buflen, "%s-out-%d", basename, i++); | ^~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from output_directory.cpp:18: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 7 and 315 bytes into a destination of size 300 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o output_directory.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o near2far.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o random.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sources.lo sources.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o .libs/sources.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step.lo step.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o .libs/step.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_db.lo step_db.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o .libs/step_db.o sources.cpp: In function ‘std::complex meep::gaussianbeam_ampfunc(const meep::vec&)’: sources.cpp:490:1: warning: control reaches end of non-void function [-Wreturn-type] 490 | } | ^ In file included from meep.hpp:24, from step.cpp:22: meep/vec.hpp: In member function ‘void meep::fields_chunk::step_source(meep::field_type, bool)’: meep/vec.hpp:432:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o step.o >/dev/null 2>&1 In file included from meep.hpp:24, from step_db.cpp:23: meep/vec.hpp: In member function ‘bool meep::fields_chunk::step_db(meep::field_type)’: meep/vec.hpp:429:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 429 | case Y: return (component)(start_point + 1); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o stress.lo stress.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o .libs/stress.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o step_db.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure.lo structure.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o sources.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o .libs/structure.o In file included from stress.cpp:21: ./meep.hpp: In constructor ‘meep::dft_force::dft_force(meep::dft_chunk*, meep::dft_chunk*, meep::dft_chunk*, const double*, size_t, const meep::volume&)’: ./meep.hpp:1194:10: warning: ‘meep::dft_force::where’ will be initialized after [-Wreorder] 1194 | volume where; | ^~~~~ ./meep.hpp:1192:23: warning: ‘std::vector meep::dft_force::freq’ [-Wreorder] 1192 | std::vector freq; | ^~~~ stress.cpp:47:1: warning: when initialized here [-Wreorder] 47 | dft_force::dft_force(dft_chunk *offdiag1_, dft_chunk *offdiag2_, dft_chunk *diag_, | ^~~~~~~~~ stress.cpp: In member function ‘meep::dft_force meep::fields::add_dft_force(const meep::volume_list*, const double*, size_t)’: stress.cpp:182:38: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 182 | everywhere = everywhere | where->v; | ^ In file included from ./meep.hpp:24, from stress.cpp:21: ./meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ structure.cpp: In member function ‘void meep::structure::choose_chunkdivision(const meep::grid_volume&, int, const meep::boundary_region&, const meep::symmetry&)’: structure.cpp:130:23: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 130 | v = gv.surroundings(); | ^ In file included from meep.hpp:24, from structure.cpp:23: meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ structure.cpp: In function ‘std::vector meep::choose_chunkdivision(meep::grid_volume&, meep::volume&, int, const meep::symmetry&)’: structure.cpp:207:25: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 207 | v = gv.surroundings(); | ^ In file included from meep.hpp:24, from structure.cpp:23: meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o stress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure_dump.lo structure_dump.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o .libs/structure_dump.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o susceptibility.lo susceptibility.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o .libs/susceptibility.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o time.lo time.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o .libs/time.o structure_dump.cpp: In member function ‘void meep::structure::dump(const char*)’: structure_dump.cpp:275:46: warning: ‘_’ directive output may be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] 275 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); | ^ structure_dump.cpp:275:31: note: using the range [-2147483648, 2147483647] for directive argument 275 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from structure_dump.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 14 and 43 bytes into a destination of size 20 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ structure_dump.cpp: In member function ‘void meep::structure::load(const char*)’: structure_dump.cpp:644:44: warning: ‘%d’ directive output may be truncated writing between 1 and 2 bytes into a region of size between 1 and 10 [-Wformat-truncation=] 644 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); | ^~ structure_dump.cpp:644:31: note: directive argument in the range [0, 19] 644 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); | ^~~~~~~~~~~~~~~~~~~ structure_dump.cpp:644:31: note: directive argument in the range [0, 4] In file included from /usr/include/stdio.h:867, from structure_dump.cpp:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 14 and 24 bytes into a destination of size 20 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o time.o >/dev/null 2>&1 In file included from meep.hpp:24, from susceptibility.cpp:31: meep/vec.hpp: In member function ‘virtual void meep::lorentzian_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const’: meep/vec.hpp:430:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | case Z: return (component)(start_point + 4); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp: In member function ‘virtual void meep::gyrotropic_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const’: meep/vec.hpp:430:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | case Z: return (component)(start_point + 4); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp: In member function ‘virtual bool meep::susceptibility::needs_W_notowned(meep::component, meep::realnum* (*)[2]) const’: meep/vec.hpp:432:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o structure_dump.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_eh.lo update_eh.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o .libs/update_eh.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o susceptibility.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mpb.lo mpb.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o .libs/mpb.o In file included from meep.hpp:24, from update_eh.cpp:20: meep/vec.hpp: In member function ‘bool meep::fields_chunk::update_eh(meep::field_type, bool)’: meep/vec.hpp:432:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp:431:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp:431:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp:431:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp:431:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp:431:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp:430:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | case Z: return (component)(start_point + 4); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o update_eh.o >/dev/null 2>&1 mpb.cpp: In member function ‘void* meep::fields::get_eigenmode(double, meep::direction, meep::volume, meep::volume, int, const meep::vec&, bool, int, double, double, double*, void**, meep::diffractedplanewave*)’: mpb.cpp:986:1: warning: no return statement in function returning non-void [-Wreturn-type] 986 | } | ^ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o mpb.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_pols.lo update_pols.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o .libs/update_pols.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o vec.lo vec.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic.lo step_generic.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o .libs/vec.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o .libs/step_generic.o vec.cpp: In member function ‘size_t meep::grid_volume::surface_area() const’: vec.cpp:866:14: warning: statement has no effect [-Wunused-value] 866 | case D1: 2; | ^ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o update_pols.o >/dev/null 2>&1 vec.cpp: In member function ‘meep::signed_direction meep::symmetry::transform(meep::direction, int) const’: vec.cpp:1367:27: warning: implicitly-declared ‘constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)’ is deprecated [-Wdeprecated-copy] 1367 | if (nme == 1) sd = S[d]; | ^ In file included from meep.hpp:24, from meep_internals.hpp:19, from vec.cpp:23: meep/vec.hpp:86:3: note: because ‘meep::signed_direction’ has user-provided ‘meep::signed_direction::signed_direction(const meep::signed_direction&)’ 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ vec.cpp:1369:43: warning: implicitly-declared ‘constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)’ is deprecated [-Wdeprecated-copy] 1369 | sd = flip(transform(S[d].d, nme - 1)); | ^ In file included from meep.hpp:24, from meep_internals.hpp:19, from vec.cpp:23: meep/vec.hpp:86:3: note: because ‘meep::signed_direction’ has user-provided ‘meep::signed_direction::signed_direction(const meep::signed_direction&)’ 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ vec.cpp:1371:37: warning: implicitly-declared ‘constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)’ is deprecated [-Wdeprecated-copy] 1371 | sd = transform(S[d].d, nme - 1); | ^ In file included from meep.hpp:24, from meep_internals.hpp:19, from vec.cpp:23: meep/vec.hpp:86:3: note: because ‘meep::signed_direction’ has user-provided ‘meep::signed_direction::signed_direction(const meep::signed_direction&)’ 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ vec.cpp: In member function ‘double meep::grid_volume::boundary_location(meep::boundary_side, meep::direction) const’: vec.cpp:712:20: warning: this statement may fall through [-Wimplicit-fallthrough=] 712 | case P: abort("P has no boundary!\n"); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ vec.cpp:713:7: note: here 713 | case NO_DIRECTION: abort("NO_DIRECTION has no boundary!\n"); | ^~~~ vec.cpp:725:20: warning: this statement may fall through [-Wimplicit-fallthrough=] 725 | case P: abort("P has no boundary!\n"); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ vec.cpp:726:7: note: here 726 | case NO_DIRECTION: abort("NO_DIRECTION has no boundary!\n"); | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meepgeom.lo meepgeom.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o meepgeom.cpp: In function ‘void meep_geom::material_grids_addgradient(meep::realnum*, size_t, std::complex*, std::complex*, meep::realnum*, size_t, meep::realnum, const meep::volume&, geom_box_tree, meep::fields*)’: meepgeom.cpp:2475:9: warning: unused variable ‘rank’ [-Wunused-variable] 2475 | int rank = f->get_array_slice_dimensions(where, &dims[3 * c], dirs, true, false, min_max_loc, | ^~~~ meepgeom.cpp:2496:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2496 | for (int i1 = 0; i1 < nf; ++i1) { // freq | ~~~^~~~ meepgeom.cpp:2497:22: warning: unused variable ‘v_cur’ [-Wunused-variable] 2497 | meep::realnum *v_cur = &v[ng * i1]; | ^~~~~ meepgeom.cpp: In function ‘meep::vec meep_geom::vector3_to_vec(vector3)’: meepgeom.cpp:254:25: warning: control reaches end of non-void function [-Wreturn-type] 254 | default: meep::abort("unknown dimensionality in vector3_to_vec"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meepgeom.cpp: In function ‘double meep_geom::vec_to_value(vector3, vector3, int)’: meepgeom.cpp:2227:1: warning: control reaches end of non-void function [-Wreturn-type] 2227 | } | ^ meepgeom.cpp: In function ‘std::complex meep_geom::cvec_to_value(vector3, cvector3, int)’: meepgeom.cpp:2212:1: warning: control reaches end of non-void function [-Wreturn-type] 2212 | } | ^ meepgeom.cpp: At global scope: meepgeom.cpp:2190:13: warning: ‘void meep_geom::print_tensor(std::complex*)’ defined but not used [-Wunused-function] 2190 | static void print_tensor(std::complex *in) { | ^~~~~~~~~~~~ In file included from meep.hpp:24, from meep_internals.hpp:19, from vec.cpp:23: meep/vec.hpp: In member function ‘meep::component meep::symmetry::transform(meep::component, int) const’: meep/vec.hpp:432:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o .libs/GDSIIgeom.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 meepgeom.cpp: In function ‘meep::realnum meep_geom::get_material_gradient(meep::realnum, std::complex, std::complex, meep::realnum, meep_geom::material_data*, meep::component, meep::realnum)’: meepgeom.cpp:2314:62: warning: ‘dir_idx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2314 | std::complex result = fields_a * dA_du[3 * dir_idx + dir_idx] * fields_f; | ~~~~~~~~~~~~^~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o step_generic.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o meepgeom.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic_stride1.lo step_generic_stride1.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o .libs/step_generic_stride1.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o step_generic_stride1.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o libmeep.la -rpath /usr/lib/x86_64-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/meepgeom.o .libs/GDSIIgeom.o .libs/step_generic_stride1.o -Wl,--whole-archive support/.libs/libsupport.a -Wl,--no-whole-archive -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -lfftw3 -lgfortran -lquadmath -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,libmeep.so.23 -o .libs/libmeep.so.23.0.1 libtool: link: (cd ".libs" && rm -f "libmeep.so.23" && ln -s "libmeep.so.23.0.1" "libmeep.so.23") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.23.0.1" "libmeep.so") libtool: link: (cd .libs/libmeep.lax/libsupport.a && x86_64-linux-gnu-ar x "/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src/support/.libs/libsupport.a") libtool: link: x86_64-linux-gnu-ar cr .libs/libmeep.a array_slice.o anisotropic_averaging.o bands.o boundaries.o bicgstab.o casimir.o cw_fields.o dft.o dft_ldos.o energy_and_flux.o fields.o loop_in_chunks.o h5fields.o h5file.o initialize.o integrate.o integrate2.o monitor.o mympi.o multilevel-atom.o near2far.o output_directory.o random.o sources.o step.o step_db.o stress.o structure.o structure_dump.o susceptibility.o time.o update_eh.o mpb.o update_pols.o vec.o step_generic.o meepgeom.o GDSIIgeom.o step_generic_stride1.o .libs/libmeep.lax/libsupport.a/mt19937ar.o libtool: link: x86_64-linux-gnu-ranlib .libs/libmeep.a libtool: link: rm -fr .libs/libmeep.lax libtool: link: ( cd ".libs" && rm -f "libmeep.la" && ln -s "../libmeep.la" "libmeep.la" ) make[5]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' Making all in tests make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' Making all in scheme make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' gen-ctl-io --cxx --header -o ctl-io.h meep.scm /usr/share/libctl gen-ctl-io --cxx --swig -o ctl-io.i meep.scm /usr/share/libctl (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; perl -pe 's/^ *class +([A-Za-z_0-9:]*)( *| *:[^{]*){.*$/%rename(meep_\1) meep::\1;/' ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | grep "%rename" | sort -u; echo; grep -hv typedef ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | perl -pe 's/(inline|const|extern|static) +//g' | perl -pe 's/^[A-Za-z_0-9:<>]+[* ]+([A-Za-z_0-9:]*) *\(.*$/%rename(meep_\1) meep::\1;/' | grep "%rename" | sort -u; ) > meep_renames.i (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; for f in ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp; do egrep "^enum" $f | perl -pe 's/enum +([A-Za-z_0-9:]+).*$/\1/g' | while read enum; do cat $f | tr -d '\n' | perl -pe 's/.*enum +'${enum}' *{([^}]*)}.*/\1/g' | perl -pe 's/= *[0-9]+//g' |tr -d ' \t' | tr ',' '\n' | perl -pe 's/^(.*)$/'"%rename(meep_${enum}_\1) meep::\1;/g"; echo; done; done;) > meep_enum_renames.i (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; grep -h friend ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | perl -pe 's/^ *friend +[A-Za-z_0-9:<>]+[* ]+([A-Za-z_0-9:]*) *\(.*$/%ignore \1;/' | grep "%ignore" | sort -u;) > meep_swig_bug_workaround.i (perl -pe 's/%rename\(([A-Za-z0-9_]*)\) *([A-Za-z0-9:_]*);$/(define \2 (\1))/' meep_enum_renames.i | perl -pe 's/[A-Za-z0-9:_]*:://g' | perl -pe 's/_/-/g' | perl -pe 's,//,;,'; echo "(define Centered Dielectric)") > meep-enums.scm ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" swig -I../src -c++ -guile -o meep_wrap.cxx ./meep.i ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" cp -f /usr/share/libctl/base/main.c main.cpp cp -f /usr/share/libctl/utils/geom.c geom.cpp gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" patch -p0 meep_wrap.cxx < ./meep_wrap.patch patching file meep_wrap.cxx Hunk #1 succeeded at 798 (offset 47 lines). sed -i.bak '/(SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob))/ s/swig_collectable_tag, smob)/swig_collectable_tag, smob) || SCM_SMOB_PREDICATE((swig_collectable_tag \& ~0xff00), (smob))/' meep_wrap.cxx; make all-am make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.17.1, Copyright (C) 2005-2021 Massachusetts Institute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-meep.o `test -f 'meep.cpp' || echo './'`meep.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.17.1, Copyright (C) 2005-2021 Massachusetts Institute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-structure.o `test -f 'structure.cpp' || echo './'`structure.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.17.1, Copyright (C) 2005-2021 Massachusetts Institute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-meep_wrap.o `test -f 'meep_wrap.cxx' || echo './'`meep_wrap.cxx mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.17.1, Copyright (C) 2005-2021 Massachusetts Institute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-main.o `test -f 'main.cpp' || echo './'`main.cpp In file included from ctl-io.h:7, from main.cpp:37: main.cpp: In function ‘void main_entry(void*, int, char**)’: main.cpp:194:31: warning: cast between incompatible function types from ‘scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM, SCM)’ {aka ‘scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)’} to ‘scm_unused_struct* (*)()’ [-Wcast-function-type] 194 | gh_new_procedure("subplex", (SCM(*)(void))subplex_scm, 7, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:202:44: warning: cast between incompatible function types from ‘scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)’ {aka ‘scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)’} to ‘scm_unused_struct* (*)()’ [-Wcast-function-type] 202 | gh_new_procedure("adaptive-integration", (SCM(*)(void))adaptive_integration_scm, 6, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:205:45: warning: cast between incompatible function types from ‘scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)’ {aka ‘scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)’} to ‘scm_unused_struct* (*)()’ [-Wcast-function-type] 205 | gh_new_procedure("cadaptive-integration", (SCM(*)(void))cadaptive_integration_scm, 6, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.17.1, Copyright (C) 2005-2021 Massachusetts Institute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-geom.o `test -f 'geom.cpp' || echo './'`geom.cpp geom.cpp:22: warning: "_GNU_SOURCE" redefined 22 | #define _GNU_SOURCE | : note: this is the location of the previous definition geom.cpp: In function ‘vector3 normal_to_prism(ctlio::prism*, vector3)’: geom.cpp:2357:11: warning: variable ‘axisp’ set but not used [-Wunused-but-set-variable] 2357 | vector3 axisp = vector3_scale(height, zhatp); | ^~~~~ structure.cpp: In function ‘meep::vec vector3_to_vec(vector3)’: structure.cpp:148:25: warning: control reaches end of non-void function [-Wreturn-type] 148 | default: meep::abort("unknown dimensionality in vector3_to_vec"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_meep_flip(SCM)’: meep_wrap.cxx:2857:13: warning: implicitly-declared ‘constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)’ is deprecated [-Wdeprecated-copy] 2857 | arg1 = *argp1; | ^~~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:86:3: note: because ‘meep::signed_direction’ has user-provided ‘meep::signed_direction::signed_direction(const meep::signed_direction&)’ 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep_wrap.cxx:2859:27: warning: implicitly-declared ‘constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)’ is deprecated [-Wdeprecated-copy] 2859 | result = meep::flip(arg1); | ^ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:86:3: note: because ‘meep::signed_direction’ has user-provided ‘meep::signed_direction::signed_direction(const meep::signed_direction&)’ 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.17.1, Copyright (C) 2005-2021 Massachusetts Institute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-ctl-io.o `test -f 'ctl-io.cpp' || echo './'`ctl-io.cpp In file included from ctl-io.h:7, from ctl-io.cpp:7: ctl-io.cpp: In function ‘void ctlio::export_external_functions()’: ctl-io.cpp:2229:38: warning: cast between incompatible function types from ‘scm_unused_struct* (*)(SCM, SCM)’ {aka ‘scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)’} to ‘scm_unused_struct* (*)()’ [-Wcast-function-type] 2229 | gh_new_procedure("square-basis-aux", (SCM (*)()) square_basis_aux, 2, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:2230:51: warning: cast between incompatible function types from ‘scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM)’ {aka ‘scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)’} to ‘scm_unused_struct* (*)()’ [-Wcast-function-type] 2230 | gh_new_procedure("range-overlap-with-object-aux", (SCM (*)()) range_overlap_with_object_aux, 5, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:2231:55: warning: cast between incompatible function types from ‘scm_unused_struct* (*)(SCM, SCM)’ {aka ‘scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)’} to ‘scm_unused_struct* (*)()’ [-Wcast-function-type] 2231 | gh_new_procedure("display-geometric-object-info-aux", (SCM (*)()) display_geometric_object_info_aux, 2, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:2232:51: warning: cast between incompatible function types from ‘scm_unused_struct* (*)(SCM, SCM)’ {aka ‘scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)’} to ‘scm_unused_struct* (*)()’ [-Wcast-function-type] 2232 | gh_new_procedure("point-in-periodic-object?-aux", (SCM (*)()) point_in_periodic_objectp_aux, 2, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:2233:42: warning: cast between incompatible function types from ‘scm_unused_struct* (*)(SCM, SCM)’ {aka ‘scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)’} to ‘scm_unused_struct* (*)()’ [-Wcast-function-type] 2233 | gh_new_procedure("normal-to-object-aux", (SCM (*)()) normal_to_object_aux, 2, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:2234:42: warning: cast between incompatible function types from ‘scm_unused_struct* (*)(SCM, SCM)’ {aka ‘scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)’} to ‘scm_unused_struct* (*)()’ [-Wcast-function-type] 2234 | gh_new_procedure("point-in-object?-aux", (SCM (*)()) point_in_objectp_aux, 2, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_meep_symmetry_transform__SWIG_0(int, scm_unused_struct**)’: meep_wrap.cxx:10569:63: warning: implicitly-declared ‘constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)’ is deprecated [-Wdeprecated-copy] 10569 | result = ((meep::symmetry const *)arg1)->transform(arg2,arg3); | ^ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:86:3: note: because ‘meep::signed_direction’ has user-provided ‘meep::signed_direction::signed_direction(const meep::signed_direction&)’ 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_meep_volume_list_v_set(SCM, SCM)’: meep_wrap.cxx:11678:26: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 11678 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_meep_structure_chunk_v_set(SCM, SCM)’: meep_wrap.cxx:20561:26: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 20561 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ structure.cpp: In member function ‘virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)’: structure.cpp:580:10: warning: ‘mat1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 580 | mat2 = mat1; | ~~~~~^~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_meep_structure_v_set(SCM, SCM)’: meep_wrap.cxx:23197:26: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 23197 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_0(int, scm_unused_struct**)’: meep_wrap.cxx:33250:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33250 | arg1 = (meep::component const) scm_to_int(argv[0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx:33253:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33253 | arg2 = (meep::component const) scm_to_int(argv[1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_1(int, scm_unused_struct**)’: meep_wrap.cxx:33310:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33310 | arg1 = (meep::component const) scm_to_int(argv[0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx:33313:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33313 | arg2 = (meep::component const) scm_to_int(argv[1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_2(int, scm_unused_struct**)’: meep_wrap.cxx:33365:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33365 | arg1 = (meep::component const) scm_to_int(argv[0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx:33368:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33368 | arg2 = (meep::component const) scm_to_int(argv[1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_meep_dft_flux_where_set(SCM, SCM)’: meep_wrap.cxx:34591:30: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 34591 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_meep_dft_energy_where_set(SCM, SCM)’: meep_wrap.cxx:36086:30: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 36086 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_meep_dft_force_where_set(SCM, SCM)’: meep_wrap.cxx:37357:30: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 37357 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_meep_dft_near2far_where_set(SCM, SCM)’: meep_wrap.cxx:39150:30: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 39150 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_meep_dft_fields_where_set(SCM, SCM)’: meep_wrap.cxx:40132:30: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 40132 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_meep_fields_chunk_v_set(SCM, SCM)’: meep_wrap.cxx:41700:26: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 41700 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function ‘scm_unused_struct* _wrap_meep_fields_v_set(SCM, SCM)’: meep_wrap.cxx:44472:26: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 44472 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ ../src/meep/vec.hpp: In function ‘scm_unused_struct* _wrap_meep_field_type_component(SCM, SCM)’: ../src/meep/vec.hpp:431:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ ../src/meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ ../src/meep/vec.hpp: In function ‘scm_unused_struct* _wrap_meep_cycle_component(SCM, SCM, SCM)’: ../src/meep/vec.hpp:431:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ ../src/meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ ../src/meep/vec.hpp: In function ‘scm_unused_struct* _wrap_meep_direction_component(SCM)’: ../src/meep/vec.hpp:431:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ ../src/meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ ../src/meep/vec.hpp:432:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ ../src/meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/.libs/libmeep.so -lctl -lguile-2.2 -lgc -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' Making all in python make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' swig -Wextra -I../src -I../libpympb -I.. -outdir . -c++ -nofastunpack -python -o meep-python.cxx ./meep.i cp meep.py __init__.py echo "__version__ = '1.17.1'" >> __init__.py if [[ "4.0.2" = 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' __init__.py; \ sed -i.bak 's/ import _meep/from . import _meep/' __init__.py; \ fi make all-am make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cxx' || echo './'`meep-python.cxx libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cxx -fPIC -DPIC -o .libs/_meep_la-meep-python.o In file included from meep-python.cxx:3508: typemap_utils.cpp: In function ‘PyObject* py_volume_object()’: typemap_utils.cpp:102:15: warning: unused variable ‘geom_mod’ [-Wunused-variable] 102 | PyObject *geom_mod = get_geom_mod(); | ^~~~~~~~ typemap_utils.cpp: In function ‘int get_attr_material(PyObject*, meep_geom::material_data**)’: typemap_utils.cpp:313:7: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable] 313 | int rval = 1; | ^~~~ typemap_utils.cpp: In function ‘int pymaterial_grid_to_material_grid(PyObject*, meep_geom::material_data*)’: typemap_utils.cpp:459:68: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=] 459 | default: meep::abort("Invalid material grid enumeration code: %d.\n", gt_enum); | ~^ ~~~~~~~ | | | | int long int | %ld meep-python.cxx: In function ‘void _get_gradient(PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*)’: meep-python.cxx:4598:5: warning: passing NULL to non-pointer argument 4 of ‘int SWIG_Python_ConvertPtrAndOwn(PyObject*, void**, swig_type_info*, int, int*)’ [-Wconversion-null] 4598 | SWIG_ConvertPtr(swigobj,&where,NULL,NULL); | ^~~~~~~~~~~~~~~ meep-python.cxx:2100:81: note: declared here 2100 | SWIG_Python_ConvertPtrAndOwn(PyObject *obj, void **ptr, swig_type_info *ty, int flags, int *own) { | ~~~~^~~~~ meep-python.cxx:4607:90: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘npy_intp’ {aka ‘long int’} [-Wformat=] 4607 | if (PyArray_DIMS(pao_grad)[0] != nf) meep::abort("Numpy grad array is allocated for %d frequencies; it should be allocated for %d.",PyArray_DIMS(pao_grad)[0],nf); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int npy_intp {aka long int} | %ld meep-python.cxx:4618:5: warning: passing NULL to non-pointer argument 4 of ‘int SWIG_Python_ConvertPtrAndOwn(PyObject*, void**, swig_type_info*, int, int*)’ [-Wconversion-null] 4618 | SWIG_ConvertPtr(f,&f_v,NULL,NULL); | ^~~~~~~~~~~~~~~ meep-python.cxx:2100:81: note: declared here 2100 | SWIG_Python_ConvertPtrAndOwn(PyObject *obj, void **ptr, swig_type_info *ty, int flags, int *own) { | ~~~~^~~~~ meep-python.cxx: In function ‘void std_vector_Sl_meep_volume_Sg____setitem____SWIG_2(std::vector*, std::vector::difference_type, const value_type&)’: meep-python.cxx:6164:33: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 6164 | *(swig::getpos(self,i)) = x; | ^ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_signed_direction___mul__(PyObject*, PyObject*)’: meep-python.cxx:21799:39: warning: implicitly-declared ‘constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)’ is deprecated [-Wdeprecated-copy] 21799 | result = (arg1)->operator *(arg2); | ^ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:86:3: note: because ‘meep::signed_direction’ has user-provided ‘meep::signed_direction::signed_direction(const meep::signed_direction&)’ 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_flip(PyObject*, PyObject*)’: meep-python.cxx:22231:15: warning: implicitly-declared ‘constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)’ is deprecated [-Wdeprecated-copy] 22231 | arg1 = *temp; | ^~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:86:3: note: because ‘meep::signed_direction’ has user-provided ‘meep::signed_direction::signed_direction(const meep::signed_direction&)’ 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep-python.cxx:22237:31: warning: implicitly-declared ‘constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)’ is deprecated [-Wdeprecated-copy] 22237 | result = meep::flip(arg1); | ^ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:86:3: note: because ‘meep::signed_direction’ has user-provided ‘meep::signed_direction::signed_direction(const meep::signed_direction&)’ 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_abort__varargs__(PyObject*, PyObject*, PyObject*)’: meep-python.cxx:22389:103: warning: unused parameter ‘varargs’ [-Wunused-parameter] 22389 | SWIGINTERN PyObject *_wrap_abort__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { | ~~~~~~~~~~^~~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_symmetry_transform__SWIG_0(PyObject*, PyObject*)’: meep-python.cxx:33158:67: warning: implicitly-declared ‘constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)’ is deprecated [-Wdeprecated-copy] 33158 | result = ((meep::symmetry const *)arg1)->transform(arg2,arg3); | ^ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:86:3: note: because ‘meep::signed_direction’ has user-provided ‘meep::signed_direction::signed_direction(const meep::signed_direction&)’ 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_volume_list_v_set(PyObject*, PyObject*)’: meep-python.cxx:34610:26: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 34610 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_structure_chunk_v_set(PyObject*, PyObject*)’: meep-python.cxx:43451:26: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 43451 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_structure_v_set(PyObject*, PyObject*)’: meep-python.cxx:46966:26: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 46966 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_dft_flux_where_set(PyObject*, PyObject*)’: meep-python.cxx:62085:30: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 62085 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_dft_energy_where_set(PyObject*, PyObject*)’: meep-python.cxx:63999:30: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 63999 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_dft_force_where_set(PyObject*, PyObject*)’: meep-python.cxx:65641:30: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 65641 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_dft_near2far_where_set(PyObject*, PyObject*)’: meep-python.cxx:67996:30: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 67996 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_dft_fields_where_set(PyObject*, PyObject*)’: meep-python.cxx:69224:30: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 69224 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_fields_chunk_v_set(PyObject*, PyObject*)’: meep-python.cxx:70839:26: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 70839 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_fields_v_set(PyObject*, PyObject*)’: meep-python.cxx:74115:26: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 74115 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_master_printf__varargs__(PyObject*, PyObject*, PyObject*)’: meep-python.cxx:114035:111: warning: unused parameter ‘varargs’ [-Wunused-parameter] 114035 | SWIGINTERN PyObject *_wrap_master_printf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { | ~~~~~~~~~~^~~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_master_printf_stderr__varargs__(PyObject*, PyObject*, PyObject*)’: meep-python.cxx:114081:118: warning: unused parameter ‘varargs’ [-Wunused-parameter] 114081 | SWIGINTERN PyObject *_wrap_master_printf_stderr__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { | ~~~~~~~~~~^~~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_debug_printf__varargs__(PyObject*, PyObject*, PyObject*)’: meep-python.cxx:114127:110: warning: unused parameter ‘varargs’ [-Wunused-parameter] 114127 | SWIGINTERN PyObject *_wrap_debug_printf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { | ~~~~~~~~~~^~~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_master_fprintf__varargs__(PyObject*, PyObject*, PyObject*)’: meep-python.cxx:114173:112: warning: unused parameter ‘varargs’ [-Wunused-parameter] 114173 | SWIGINTERN PyObject *_wrap_master_fprintf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { | ~~~~~~~~~~^~~~~~~ meep-python.cxx: In instantiation of ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector; Difference = long int; InputSeq = std::vector; Py_ssize_t = long int]’: meep-python.cxx:6105:97: required from here meep-python.cxx:5155:17: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 5155 | *it++ = *isit++; | ~~~~~~^~~~~~~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx:5171:15: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 5171 | *it++ = *isit++; | ~~~~~~^~~~~~~~~ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ In file included from meep-python.cxx:3508: typemap_utils.cpp: In function ‘PyObject* gobj_to_py_obj(geometric_object*)’: typemap_utils.cpp:1003:18: warning: control reaches end of non-void function [-Wreturn-type] 1003 | meep::abort("Conversion of non-prism geometric_object to Python is not supported"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ typemap_utils.cpp: In function ‘PyObject* material_to_py_material(meep_geom::material_type)’: typemap_utils.cpp:704:18: warning: control reaches end of non-void function [-Wreturn-type] 704 | meep::abort("Can only convert C++ medium_struct to Python"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ typemap_utils.cpp: At global scope: typemap_utils.cpp:98:18: warning: ‘PyObject* py_volume_object()’ defined but not used [-Wunused-function] 98 | static PyObject *py_volume_object() { | ^~~~~~~~~~~~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_direction_component(PyObject*, PyObject*)’: meep-python.cxx:778:42: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 778 | #define PyInt_FromLong(x) PyLong_FromLong(x) | ^ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ ../src/meep/vec.hpp:432:32: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ ../src/meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_field_type_component(PyObject*, PyObject*)’: meep-python.cxx:778:42: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 778 | #define PyInt_FromLong(x) PyLong_FromLong(x) | ^ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ meep-python.cxx: In function ‘PyObject* _wrap_cycle_component(PyObject*, PyObject*)’: meep-python.cxx:778:42: warning: ‘start_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] 778 | #define PyInt_FromLong(x) PyLong_FromLong(x) | ^ In file included from meep-python.cxx:2938: ../src/meep/vec.hpp:414:13: note: ‘start_point’ was declared here 414 | component start_point; | ^~~~~~~~~~~ In file included from meep-python.cxx:3508: typemap_utils.cpp: In function ‘int pymaterial_to_material(PyObject*, meep_geom::material_data**)’: typemap_utils.cpp:565:7: warning: ‘md’ may be used uninitialized in this function [-Wmaybe-uninitialized] 565 | *mt = md; | ~~~~^~~~ meep-python.cxx: In function ‘void _get_gradient(PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*)’: meep-python.cxx:4622:42: warning: ‘f_v’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4622 | meep_geom::material_grids_addgradient(grad_c,ng,fields_a_c,fields_f_c,frequencies_c,nf,scalegrad,*where_vol,geometry_tree,f_c); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep-python.cxx:4614:49: warning: ‘where’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4614 | geom_box_tree geometry_tree = calculate_tree(*where_vol,*l); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cxx -fPIC -DPIC -o _meep_la-meep-python.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.9/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o .libs/_meep_la-meep-python.o -Wl,-rpath -Wl,/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src/.libs ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lquadmath -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.23 -o .libs/_meep.so.23.0.1 libtool: link: (cd ".libs" && rm -f "_meep.so.23" && ln -s "_meep.so.23.0.1" "_meep.so.23") libtool: link: (cd ".libs" && rm -f "_meep.so" && ln -s "_meep.so.23.0.1" "_meep.so") libtool: link: x86_64-linux-gnu-ar cr .libs/_meep.a _meep_la-meep-python.o libtool: link: x86_64-linux-gnu-ranlib .libs/_meep.a libtool: link: ( cd ".libs" && rm -f "_meep.la" && ln -s "../_meep.la" "_meep.la" ) mkdir -p meep cp __init__.py ./geom.py ./simulation.py ./source.py ./visualization.py ./materials.py ./verbosity_mgr.py .libs/_meep.so meep make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' cp -f ./meep-pkgconfig meep.pc make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' make[2]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' make[1]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' echo if [ "" = "armel" ] || \ [ "" = "riscv64" ] || \ [ "" = "mipsel" ] || \ [ "" = "mips64el" ] || \ [ "" = "hurd-i386" ] ; then \ echo "Do not make tests on this architecture" ;\ else \ echo "Do make tests on this architecture" ;\ make check; \ find; \ cat tests/test-suite.log; \ fi Do make tests on this architecture make[2]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' Making check in src make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make check-recursive make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' Making check in support make[5]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src/support' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src/support' make[5]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' Making check in tests make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' make aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml pw-source-ll ring-ll cyl-ellipsoid-ll absorber-1d-ll array-slice-ll user-defined-material dft-fields gdsII-3d bend-flux-ll array-metadata make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o aniso_disp.o aniso_disp.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o aniso_disp aniso_disp.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/aniso_disp aniso_disp.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bench.o bench.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o bench bench.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/bench bench.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bragg_transmission.o bragg_transmission.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o bragg_transmission bragg_transmission.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/bragg_transmission bragg_transmission.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 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-ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/pw-source-ll pw-source-ll.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o ring-ll.o ring-ll.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o ring-ll ring-ll.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/ring-ll ring-ll.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o cyl-ellipsoid-ll.o cyl-ellipsoid-ll.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o cyl-ellipsoid-ll cyl-ellipsoid-ll.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/cyl-ellipsoid-ll cyl-ellipsoid-ll.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 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-lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/absorber-1d-ll absorber-1d-ll.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu 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-DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o user-defined-material.o user-defined-material.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o user-defined-material user-defined-material.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib 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-I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft-fields.o dft-fields.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o dft-fields dft-fields.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 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gdsII-3d.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o gdsII-3d gdsII-3d.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/gdsII-3d gdsII-3d.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bend-flux-ll.o bend-flux-ll.cpp bend-flux-ll.cpp: In function ‘meep::structure create_structure_from_GDSII(char*, bool, meep::volume&, meep::volume&, meep::volume&)’: bend-flux-ll.cpp:70:61: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 70 | vsrc = meep_geom::get_GDSII_volume(GDSIIFile, SOURCE_LAYER); | ^ In file included from ../src/meep.hpp:24, from bend-flux-ll.cpp:16: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ bend-flux-ll.cpp:71:61: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 71 | vrefl = meep_geom::get_GDSII_volume(GDSIIFile, RFLUX_LAYER); | ^ In file included from ../src/meep.hpp:24, from bend-flux-ll.cpp:16: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ bend-flux-ll.cpp:73:97: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 73 | meep_geom::get_GDSII_volume(GDSIIFile, (no_bend ? STRAIGHT_TFLUX_LAYER : BENT_TFLUX_LAYER)); | ^ In file included from ../src/meep.hpp:24, from bend-flux-ll.cpp:16: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ bend-flux-ll.cpp: In function ‘meep::structure create_structure_by_hand(bool, bool, meep::volume&, meep::volume&, meep::volume&)’: bend-flux-ll.cpp:174:98: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 174 | volume(vec(-0.5 * sx + dpml, wvg_ycen - 0.5 * w), vec(-0.5 * sx + dpml, wvg_ycen + 0.5 * w)); | ^ In file included from ../src/meep.hpp:24, from bend-flux-ll.cpp:16: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ bend-flux-ll.cpp:175:88: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 175 | vrefl = volume(vec(-0.5 * sx + 1.5, wvg_ycen - w), vec(-0.5 * sx + 1.5, wvg_ycen + w)); | ^ In file included from ../src/meep.hpp:24, from bend-flux-ll.cpp:16: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ bend-flux-ll.cpp:177:99: warning: implicitly-declared ‘constexpr meep::volume& meep::volume::operator=(const meep::volume&)’ is deprecated [-Wdeprecated-copy] 177 | : volume(vec(wvg_xcen - w, 0.5 * sy - 1.5), vec(wvg_xcen + w, 0.5 * sy - 1.5))); | ^ In file included from ../src/meep.hpp:24, from bend-flux-ll.cpp:16: ../src/meep/vec.hpp:829:3: note: because ‘meep::volume’ has user-provided ‘meep::volume::volume(const meep::volume&)’ 829 | volume(const volume &vol); | ^~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o bend-flux-ll bend-flux-ll.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/bend-flux-ll bend-flux-ll.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array-metadata.o array-metadata.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o array-metadata array-metadata.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/array-metadata array-metadata.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' make check-TESTS make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' make[5]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' PASS: aniso_disp PASS: bench PASS: bragg_transmission PASS: convergence_cyl_waveguide PASS: cylindrical PASS: flux PASS: harmonics PASS: integrate PASS: known_results PASS: near2far PASS: one_dimensional PASS: physical PASS: stress_tensor PASS: symmetry PASS: three_d PASS: two_dimensional PASS: 2D_convergence PASS: h5test PASS: pml ============================================================================ Testsuite summary for meep 1.17.1 ============================================================================ # TOTAL: 19 # PASS: 19 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' Making check in scheme make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' make check-am make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' Making check in python make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make check-am make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make check-TESTS make[5]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[6]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' FAIL: tests/3rd_harm_1d.py FAIL: tests/absorber_1d.py FAIL: tests/antenna_radiation.py FAIL: tests/array_metadata.py FAIL: tests/bend_flux.py FAIL: tests/cavity_arrayslice.py FAIL: tests/cavity_farfield.py FAIL: tests/chunks.py FAIL: tests/cyl_ellipsoid.py FAIL: tests/dft_energy.py FAIL: tests/dft_fields.py FAIL: tests/divide_mpi_processes.py FAIL: tests/eigfreq.py FAIL: tests/faraday_rotation.py FAIL: tests/field_functions.py FAIL: tests/force.py FAIL: tests/fragment_stats.py FAIL: tests/gaussianbeam.py FAIL: tests/geom.py FAIL: tests/get_point.py FAIL: tests/holey_wvg_bands.py FAIL: tests/holey_wvg_cavity.py FAIL: tests/ldos.py PASS: tests/material_grid.py PASS: tests/medium_evaluations.py FAIL: tests/multilevel_atom.py FAIL: tests/n2f_periodic.py FAIL: tests/oblique_source.py FAIL: tests/physical.py FAIL: tests/prism.py FAIL: tests/pw_source.py FAIL: tests/refl_angular.py FAIL: tests/ring.py FAIL: tests/ring_cyl.py FAIL: tests/simulation.py FAIL: tests/special_kz.py FAIL: tests/source.py FAIL: tests/user_defined_material.py FAIL: tests/visualization.py ============================================================================ Testsuite summary for meep 1.17.1 ============================================================================ # TOTAL: 39 # PASS: 2 # SKIP: 0 # XFAIL: 0 # FAIL: 37 # XPASS: 0 # ERROR: 0 ============================================================================ See python/test-suite.log ============================================================================ make[6]: *** [Makefile:1081: test-suite.log] Error 1 make[6]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[5]: *** [Makefile:1189: check-TESTS] Error 2 make[5]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[4]: *** [Makefile:1255: check-am] Error 2 make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[3]: *** [Makefile:1257: check] Error 2 make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[2]: *** [Makefile:508: check-recursive] Error 1 make[2]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' . ./py-compile ./test-driver ./src ./src/anisotropic_averaging.o ./src/integrate2.o ./src/h5file.lo ./src/GDSIIgeom.lo ./src/dft_ldos.o ./src/integrate2.cpp ./src/step.lo ./src/cw_fields.lo ./src/mpb.cpp ./src/material_data.hpp ./src/step.cpp ./src/step_generic.lo ./src/bicgstab.o ./src/update_pols.cpp ./src/bands.cpp ./src/array_slice.o ./src/energy_and_flux.o ./src/step_db.lo ./src/near2far.cpp ./src/vec.lo ./src/step_generic_stride1.cpp ./src/structure_dump.cpp ./src/GDSIIgeom.cpp ./src/bands.o ./src/structure_dump.o ./src/sources.lo ./src/step_db.cpp ./src/near2far.lo ./src/meep.hpp ./src/initialize.lo ./src/time.lo ./src/casimir.lo ./src/structure.o ./src/mympi.o ./src/meepgeom.hpp ./src/near2far.o ./src/update_eh.o ./src/.libs ./src/.libs/anisotropic_averaging.o ./src/.libs/integrate2.o ./src/.libs/dft_ldos.o ./src/.libs/bicgstab.o ./src/.libs/array_slice.o ./src/.libs/energy_and_flux.o ./src/.libs/bands.o ./src/.libs/structure_dump.o ./src/.libs/structure.o ./src/.libs/mympi.o ./src/.libs/near2far.o ./src/.libs/update_eh.o ./src/.libs/GDSIIgeom.o ./src/.libs/stress.o ./src/.libs/libmeep.a ./src/.libs/time.o ./src/.libs/vec.o ./src/.libs/dft.o ./src/.libs/libmeep.so.23.0.1 ./src/.libs/casimir.o ./src/.libs/initialize.o ./src/.libs/step_generic.o ./src/.libs/step_db.o ./src/.libs/monitor.o ./src/.libs/loop_in_chunks.o ./src/.libs/fields.o ./src/.libs/random.o ./src/.libs/libmeep.la ./src/.libs/mpb.o ./src/.libs/step_generic_stride1.o ./src/.libs/h5fields.o ./src/.libs/libmeep.so ./src/.libs/h5file.o ./src/.libs/step.o ./src/.libs/sources.o ./src/.libs/libmeep.lai ./src/.libs/susceptibility.o ./src/.libs/multilevel-atom.o ./src/.libs/boundaries.o ./src/.libs/libmeep.so.23 ./src/.libs/cw_fields.o ./src/.libs/output_directory.o ./src/.libs/integrate.o ./src/.libs/meepgeom.o ./src/.libs/update_pols.o ./src/support ./src/support/libsupport.la ./src/support/.libs ./src/support/.libs/libsupport.la ./src/support/.libs/libsupport.a ./src/support/.libs/mt19937ar.o ./src/support/Makefile ./src/support/Makefile.in ./src/support/mt19937ar.lo ./src/support/mt19937ar.c ./src/support/meep_mt.h ./src/support/Makefile.am ./src/support/mt19937ar.o ./src/update_eh.cpp ./src/GDSIIgeom.o ./src/stress.lo ./src/loop_in_chunks.lo ./src/stress.o ./src/step_generic.cpp ./src/integrate2.lo ./src/monitor.lo ./src/Makefile ./src/bicgstab.lo ./src/structure_dump.lo ./src/h5file.cpp ./src/dft_ldos.lo ./src/time.o ./src/adjust_verbosity.hpp ./src/meepgeom.lo ./src/vec.o ./src/Makefile.in ./src/dft.o ./src/meepgeom.cpp ./src/multilevel-atom.cpp ./src/casimir.o ./src/bands.lo ./src/random.lo ./src/integrate.lo ./src/monitor.cpp ./src/update_eh.lo ./src/update_pols.lo ./src/integrate.cpp ./src/dft.cpp ./src/anisotropic_averaging.cpp ./src/fields.lo ./src/structure.cpp ./src/stress.cpp ./src/casimir.cpp ./src/anisotropic_averaging.lo ./src/initialize.o ./src/sphere-quad.o ./src/boundaries.cpp ./src/h5fields.cpp ./src/sources.cpp ./src/bicgstab.hpp ./src/energy_and_flux.lo ./src/step_generic.o ./src/array_slice.cpp ./src/step_db.o ./src/output_directory.lo ./src/monitor.o ./src/fields.cpp ./src/initialize.cpp ./src/sphere-quad.h ./src/loop_in_chunks.o ./src/fields.o ./src/dft_ldos.cpp ./src/random.o ./src/step_generic_stride1.lo ./src/boundaries.lo ./src/mympi.lo ./src/susceptibility.lo ./src/dft.lo ./src/time.cpp ./src/mpb.lo ./src/meep ./src/meep/mympi.hpp ./src/meep/vec.hpp ./src/libmeep.la ./src/mpb.o ./src/step_generic_stride1.o ./src/h5fields.o ./src/h5file.o ./src/output_directory.cpp ./src/sphere-quad.cpp ./src/step.o ./src/meep_internals.hpp ./src/vec.cpp ./src/susceptibility.cpp ./src/sources.o ./src/energy_and_flux.cpp ./src/loop_in_chunks.cpp ./src/structure.lo ./src/mympi.cpp ./src/sphere_quad ./src/susceptibility.o ./src/multilevel-atom.o ./src/boundaries.o ./src/multilevel-atom.lo ./src/bicgstab.cpp ./src/cw_fields.o ./src/output_directory.o ./src/array_slice.lo ./src/cw_fields.cpp ./src/integrate.o ./src/meepgeom.o ./src/h5fields.lo ./src/Makefile.am ./src/update_pols.o ./src/random.cpp ./config.h ./config.status ./ltmain.sh ./autogen.sh ./python ./python/adjoint ./python/adjoint/__init__.py ./python/adjoint/filter_source.py ./python/adjoint/optimization_problem.py ./python/adjoint/objective.py ./python/adjoint/basis.py ./python/adjoint/filters.py ./python/meep-python.cxx ./python/__init__.py ./python/verbosity_mgr.py ./python/examples ./python/examples/mpb_hole_slab.py ./python/examples/cyl-ellipsoid.py ./python/examples/media ./python/examples/media/holey-wvg-bands-0.3-0.8838.mp4 ./python/examples/media/holey-wvg-bands-0.4-0.1896.mp4 ./python/examples/media/oblique-source-normal.mp4 ./python/examples/media/ring_mid.mp4 ./python/examples/media/hole-wvg-cavity-res.mp4 ./python/examples/media/holey-wvg-bands-0.25-0.2506.mp4 ./python/examples/media/holey-wvg-bands-0.1-0.4811.mp4 ./python/examples/media/visualization_demo.gif ./python/examples/media/visualization_normalize.mp4 ./python/examples/media/bent_waveguide.mp4 ./python/examples/media/oblique-source-eig.mp4 ./python/examples/media/holey-wvg-bands-0.4-0.3175.mp4 ./python/examples/media/straight_waveguide.mp4 ./python/examples/media/ring_large.mp4 ./python/examples/media/hole-wvg-cavity.mp4 ./python/examples/media/visualization_demo.mp4 ./python/examples/media/ring_simple.mp4 ./python/examples/media/visualization_out_plane.mp4 ./python/examples/binary_grating.ipynb ./python/examples/cavity_arrayslice.py ./python/examples/solve-cw.py ./python/examples/stochastic_emitter.ipynb ./python/examples/polarization_grating.py ./python/examples/mpb_bragg_sine.py ./python/examples/perturbation_theory_2d.py ./python/examples/oblique-planewave.py ./python/examples/straight-waveguide.py ./python/examples/binary_grating_phasemap.ipynb ./python/examples/refl-angular.ipynb ./python/examples/refl-quartz.py ./python/examples/mpb_tri_holes.py ./python/examples/cylinder_cross_section.ipynb ./python/examples/material-dispersion.py ./python/examples/coupler.py ./python/examples/chirped_pulse.py ./python/examples/bend-flux.ipynb ./python/examples/bent-waveguide.ipynb ./python/examples/wvg-src.py ./python/examples/parallel-wvgs-force.ipynb ./python/examples/mpb_strip.py ./python/examples/zone_plate.ipynb ./python/examples/faraday-rotation.py ./python/examples/pw-source.py ./python/examples/refl-angular-kz2d.py ./python/examples/3rd-harm-1d.py ./python/examples/mpb_bragg.py ./python/examples/finite_grating.py ./python/examples/binary_grating_oblique.py ./python/examples/holey-wvg-cavity.ipynb ./python/examples/antenna-radiation.py ./python/examples/absorber-1d.py ./python/examples/cavity-farfield.ipynb ./python/examples/mpb_data_analysis.py ./python/examples/mpb_sq_rods.py ./python/examples/mpb_line_defect.py ./python/examples/3rd-harm-1d.ipynb ./python/examples/mie_scattering.ipynb ./python/examples/coupler.gds ./python/examples/mode-decomposition.ipynb ./python/examples/metasurface_lens.ipynb ./python/examples/oblique-planewave.ipynb ./python/examples/mpb_tri_rods.py ./python/examples/cavity-farfield.py ./python/examples/oblique-source.py ./python/examples/coupler.ipynb ./python/examples/binary_grating_n2f.py ./python/examples/holey-wvg-bands.py ./python/examples/ring.ipynb ./python/examples/parallel-wvgs-force.py ./python/examples/absorbed_power_density.py ./python/examples/antenna-radiation.ipynb ./python/examples/stochastic_emitter_line.py ./python/examples/phase_in_material.py ./python/examples/bent-waveguide.py ./python/examples/metasurface_lens.py ./python/examples/mpb_honey_rods.py ./python/examples/perturbation_theory.ipynb ./python/examples/adjoint_optimization ./python/examples/adjoint_optimization/05-Minimax.ipynb ./python/examples/adjoint_optimization/02-Waveguide_Bend.ipynb ./python/examples/adjoint_optimization/01-Introduction.ipynb ./python/examples/adjoint_optimization/04-Splitter.ipynb ./python/examples/adjoint_optimization/Fourier Fields Optimization in Waveguide Bend.ipynb ./python/examples/adjoint_optimization/Near2Far-Optimization-with-Epigraph-Formulation.ipynb ./python/examples/adjoint_optimization/03-Filtered_Waveguide_Bend.ipynb ./python/examples/cylinder_cross_section.py ./python/examples/binary_grating_oblique.ipynb ./python/examples/differential_cross_section.py ./python/examples/absorbed_power_density.ipynb ./python/examples/finite_grating.ipynb ./python/examples/metal-cavity-ldos.py ./python/examples/mie_scattering.py ./python/examples/oblique-source.ipynb ./python/examples/gaussian-beam.py ./python/examples/ring-cyl.py ./python/examples/stochastic_emitter.py ./python/examples/solve-cw.ipynb ./python/examples/refl-angular.py ./python/examples/mpb_tutorial.py ./python/examples/ring_gds.py ./python/examples/parallel-wvgs-mpb.py ./python/examples/differential_cross_section.ipynb ./python/examples/bend-flux.py ./python/examples/ring.py ./python/examples/holey-wvg-cavity.py ./python/examples/mode-decomposition.py ./python/examples/holey-wvg-bands.ipynb ./python/examples/ring-mode-overlap.py ./python/examples/zone_plate.py ./python/examples/metal-cavity-ldos.ipynb ./python/examples/multilevel-atom.py ./python/examples/refl-quartz.ipynb ./python/examples/perturbation_theory.py ./python/examples/mpb_diamond.py ./python/examples/binary_grating_phasemap.py ./python/examples/binary_grating_n2f.ipynb ./python/examples/README.md ./python/examples/straight-waveguide.ipynb ./python/examples/binary_grating.py ./python/examples/polarization_grating.ipynb ./python/examples/diffracted_planewave.py ./python/examples/cherenkov-radiation.py ./python/meep.i ./python/.libs ./python/.libs/_meep.so.23.0.1 ./python/.libs/_meep.a ./python/.libs/_meep.so.23 ./python/.libs/_meep.la ./python/.libs/_meep.so ./python/.libs/_meep_la-meep-python.o ./python/.libs/_meep.lai ./python/geom.py ./python/Makefile ./python/solver.py ./python/mpb.i ./python/Makefile.in ./python/_meep.la ./python/_meep_la-meep-python.lo ./python/mpb_data.py ./python/visualization.py ./python/_meep_la-meep-python.o ./python/materials.py ./python/vec.i ./python/meep ./python/meep/__init__.py ./python/meep/verbosity_mgr.py ./python/meep/geom.py ./python/meep/_meep.so ./python/meep/visualization.py ./python/meep/materials.py ./python/meep/__pycache__ 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./python/tests/data/cavity_arrayslice_2d.npy ./python/tests/data/line-defect-e.k04.b12.z.tm.h5 ./python/tests/data/nonconvex_prism_vertices1.npz ./python/tests/data/tutorial-te-eigenvectors-3-3.h5 ./python/tests/data/tri-rods-e.k11.b08.z.tm.h5 ./python/tests/data/converted-tri-rods-e.k11.b08.tm.h5 ./python/tests/data/bragg-h.k01.b08.y.tm.h5 ./python/tests/data/tutorial-mu.h5 ./python/tests/data/amp_func_file.h5 ./python/tests/data/tutorial-d.k16.b08.te.h5 ./python/tests/data/cavity-farfield-4-freqs.h5 ./python/tests/data/bend-flux.gds ./python/tests/data/tutorial-epsilon.h5 ./python/tests/data/cavity_arrayslice_1d.npy ./python/tests/data/tutorial-flux.v.k11.b08.te.h5 ./python/tests/data/tutorial-e.k16.b08.te.h5 ./python/tests/data/tutorial-d.k01.b02.te.h5 ./python/tests/data/diamond-dpwr.k06.b05.h5 ./python/tests/data/tutorial-e.k16.b08.z.tm.h5 ./python/tests/data/nonconvex_prism_vertices2.npz ./python/tests/data/spiral.gds ./python/tests/data/nonconvex_prism_vertices3.npz 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./doc/docs/images/fused_quartz_reflectance_spectrum.png ./doc/docs/images/stochastic_emitter_normalized_flux_comparison.png ./doc/docs/images/zone_plate_schematic.png ./doc/docs/images/sphere_epsilon.png ./doc/docs/images/Tut-holey-cavity.png ./doc/docs/images/finite_grating_nperiods5.png ./doc/docs/images/meep_salt_comparison_thresh.png ./doc/docs/images/pwsource_Ez_PML.png ./doc/docs/images/parallel_benchmark_barplot.png ./doc/docs/images/multi_mode_eigsource_pulse_B.png ./doc/docs/images/finite_grating_nperiods20.png ./doc/docs/images/klayout_schematic.png ./doc/docs/images/CWsolver-scheme.png ./doc/docs/images/Material-dispersion-epsre.png ./doc/docs/images/oblique_source_singlemode.png ./doc/docs/images/Chunks_NP1.png ./doc/docs/images/BentFluxGeometryVisualization.png ./doc/docs/images/chirped_pulse.png ./doc/docs/images/C2_symmetry.png ./doc/docs/images/subpixel_smoothing.png ./doc/docs/images/metasurface_lens_phasemap.png ./doc/docs/images/BentFluxFieldsVisualization.png ./doc/docs/images/Tut-ring-ez-0.175.gif ./doc/docs/images/directional_coupler_flux.png ./doc/docs/images/parallel_benchmark_commcomp_vs_nprocs.png ./doc/docs/images/output_epsilon_kpoint.png ./doc/docs/images/metasurface_lens_farfield.png ./doc/docs/images/Holey-wvg-cavity-eps-000000.00.png ./doc/docs/images/ring_resonator_gds_Hz.png ./doc/docs/images/LED_layout.png ./doc/docs/images/Surface-force.jpg ./doc/docs/images/Holey-wvg-cavity-Q.png ./doc/docs/images/line_source_DCT_ampfunc_convergence.png ./doc/docs/images/Source_radiation_pattern.png ./doc/docs/images/Faraday-rotation-comparison.png ./doc/docs/images/Ring-cyl-ez-0.118.png ./doc/docs/images/oblique_source_multimode.png ./doc/docs/images/refl_coeff_vs_taper_length.png ./doc/docs/images/reflectance_angular_spectrum.png ./doc/docs/images/stochastic_emitter_line_normalized_flux_comparison.png ./doc/docs/images/zone_plate_farfield.png ./doc/docs/images/single_mode_eigsource_pulse.png ./doc/docs/images/Ring-cyl-ez-0.176.png ./doc/docs/images/Vac.jpg ./doc/docs/images/Faraday-rotation.png ./doc/docs/images/ring_vary_radius.png ./doc/docs/images/Holey-cavity-trans.png ./doc/docs/images/pypackage_creation.png ./doc/docs/images/PermittivityWithLabeledAxes.png ./doc/docs/mdx_math.py ./doc/docs/Replacements.vim ./doc/docs/License_and_Copyright.md ./doc/docs/mathjaxhelper.js ./doc/README.md ./config.log ./LICENSE ./README.md ./Makefile.am ./.mailmap ./TODO ./compile ======================================= meep 1.17.1: tests/test-suite.log ======================================= # TOTAL: 19 # PASS: 19 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 make[1]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' dh_installchangelogs NEWS.md dh_auto_install make -j1 install DESTDIR=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' Making install in src make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make install-recursive make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' Making install in support make[5]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src/support' make[6]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src/support' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src/support' make[5]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src/support' make[5]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make[6]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' /bin/mkdir -p '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmeep.so.23.0.1 /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.so.23.0.1 libtool: install: (cd /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmeep.so.23.0.1 libmeep.so.23 || { rm -f libmeep.so.23 && ln -s libmeep.so.23.0.1 libmeep.so.23; }; }) libtool: install: (cd /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmeep.so.23.0.1 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.23.0.1 libmeep.so; }; }) libtool: install: /usr/bin/install -c .libs/libmeep.lai /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.la libtool: install: /usr/bin/install -c .libs/libmeep.a /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.a libtool: install: chmod 644 /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.a libtool: install: x86_64-linux-gnu-ranlib /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/include' /usr/bin/install -c -m 644 meep.hpp '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/include' /bin/mkdir -p '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/include/meep' /usr/bin/install -c -m 644 meep/mympi.hpp meep/vec.hpp meepgeom.hpp material_data.hpp adjust_verbosity.hpp '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/include/meep' make[6]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make[5]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/src' Making install in tests make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/tests' Making install in scheme make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' make install-am make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' make[5]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' /bin/mkdir -p '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c meep '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/bin' libtool: warning: '../src/libmeep.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/meep /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/bin/meep /bin/mkdir -p '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/share/meep' /usr/bin/install -c -m 644 meep.scm meep-enums.scm casimir.scm materials.scm '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/share/meep' make[5]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/scheme' Making install in python make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make install-am make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[5]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' /bin/mkdir -p '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' /bin/bash ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' libtool: warning: relinking '_meep.la' libtool: install: (cd /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python; /bin/bash "/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.9/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp) libtool: relink: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o .libs/_meep_la-meep-python.o -L/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmeep -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lquadmath -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.23 -o .libs/_meep.so.23.0.1 libtool: install: /usr/bin/install -c .libs/_meep.so.23.0.1T /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.so.23.0.1 libtool: install: (cd /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep && { ln -s -f _meep.so.23.0.1 _meep.so.23 || { rm -f _meep.so.23 && ln -s _meep.so.23.0.1 _meep.so.23; }; }) libtool: install: (cd /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep && { ln -s -f _meep.so.23.0.1 _meep.so || { rm -f _meep.so && ln -s _meep.so.23.0.1 _meep.so; }; }) libtool: install: /usr/bin/install -c .libs/_meep.lai /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.la libtool: install: /usr/bin/install -c .libs/_meep.a /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.a libtool: install: chmod 644 /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.a libtool: install: x86_64-linux-gnu-ranlib /build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.a libtool: warning: remember to run 'libtool --finish /usr/lib/python3.9/site-packages/meep' /bin/mkdir -p '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint' /usr/bin/install -c -m 644 ./adjoint/__init__.py ./adjoint/basis.py ./adjoint/objective.py ./adjoint/optimization_problem.py ./adjoint/filters.py ./adjoint/filter_source.py '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint' Byte-compiling python modules... __init__.pybasis.pyobjective.pyoptimization_problem.pyfilters.pyfilter_source.py Byte-compiling python modules (optimized versions) ... __init__.pybasis.pyobjective.pyoptimization_problem.pyfilters.pyfilter_source.py /bin/mkdir -p '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' /usr/bin/install -c -m 644 __init__.py ./geom.py ./simulation.py ./source.py ./visualization.py ./materials.py ./verbosity_mgr.py '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' Byte-compiling python modules... __init__.pygeom.pysimulation.pysource.pyvisualization.pymaterials.pyverbosity_mgr.py Byte-compiling python modules (optimized versions) ... __init__.pygeom.pysimulation.pysource.pyvisualization.pymaterials.pyverbosity_mgr.py make install-data-hook make[6]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[6]: Nothing to be done for 'install-data-hook'. make[6]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[5]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/python' make[3]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' make[4]: Entering directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 meep.pc '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[4]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' make[3]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' make[2]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' find . ./py-compile ./test-driver ./src ./src/anisotropic_averaging.o ./src/integrate2.o ./src/h5file.lo ./src/GDSIIgeom.lo ./src/dft_ldos.o ./src/integrate2.cpp ./src/step.lo ./src/cw_fields.lo ./src/mpb.cpp ./src/material_data.hpp ./src/step.cpp ./src/step_generic.lo ./src/bicgstab.o ./src/update_pols.cpp ./src/bands.cpp ./src/array_slice.o ./src/energy_and_flux.o ./src/step_db.lo ./src/near2far.cpp ./src/vec.lo ./src/step_generic_stride1.cpp ./src/structure_dump.cpp ./src/GDSIIgeom.cpp ./src/bands.o ./src/structure_dump.o ./src/sources.lo ./src/step_db.cpp ./src/near2far.lo ./src/meep.hpp ./src/initialize.lo ./src/time.lo ./src/casimir.lo ./src/structure.o ./src/mympi.o ./src/meepgeom.hpp ./src/near2far.o ./src/update_eh.o ./src/.libs ./src/.libs/anisotropic_averaging.o ./src/.libs/integrate2.o ./src/.libs/dft_ldos.o ./src/.libs/bicgstab.o ./src/.libs/array_slice.o ./src/.libs/energy_and_flux.o ./src/.libs/bands.o ./src/.libs/structure_dump.o ./src/.libs/structure.o ./src/.libs/mympi.o ./src/.libs/near2far.o ./src/.libs/update_eh.o ./src/.libs/GDSIIgeom.o ./src/.libs/stress.o ./src/.libs/libmeep.a ./src/.libs/time.o ./src/.libs/vec.o ./src/.libs/dft.o ./src/.libs/libmeep.so.23.0.1 ./src/.libs/casimir.o ./src/.libs/initialize.o ./src/.libs/step_generic.o ./src/.libs/step_db.o ./src/.libs/monitor.o ./src/.libs/loop_in_chunks.o ./src/.libs/fields.o ./src/.libs/random.o ./src/.libs/libmeep.la ./src/.libs/mpb.o ./src/.libs/step_generic_stride1.o ./src/.libs/h5fields.o ./src/.libs/libmeep.so ./src/.libs/h5file.o ./src/.libs/step.o ./src/.libs/sources.o ./src/.libs/libmeep.lai ./src/.libs/susceptibility.o ./src/.libs/multilevel-atom.o ./src/.libs/boundaries.o ./src/.libs/libmeep.so.23 ./src/.libs/cw_fields.o ./src/.libs/output_directory.o ./src/.libs/integrate.o ./src/.libs/meepgeom.o ./src/.libs/update_pols.o ./src/support ./src/support/libsupport.la ./src/support/.libs ./src/support/.libs/libsupport.la ./src/support/.libs/libsupport.a ./src/support/.libs/mt19937ar.o ./src/support/Makefile ./src/support/Makefile.in ./src/support/mt19937ar.lo ./src/support/mt19937ar.c ./src/support/meep_mt.h ./src/support/Makefile.am ./src/support/mt19937ar.o ./src/update_eh.cpp ./src/GDSIIgeom.o ./src/stress.lo ./src/loop_in_chunks.lo ./src/stress.o ./src/step_generic.cpp ./src/integrate2.lo ./src/monitor.lo ./src/Makefile ./src/bicgstab.lo ./src/structure_dump.lo ./src/h5file.cpp ./src/dft_ldos.lo ./src/time.o ./src/adjust_verbosity.hpp ./src/meepgeom.lo ./src/vec.o ./src/Makefile.in ./src/dft.o ./src/meepgeom.cpp ./src/multilevel-atom.cpp ./src/casimir.o ./src/bands.lo ./src/random.lo ./src/integrate.lo ./src/monitor.cpp ./src/update_eh.lo ./src/update_pols.lo ./src/integrate.cpp ./src/dft.cpp ./src/anisotropic_averaging.cpp ./src/fields.lo ./src/structure.cpp ./src/stress.cpp ./src/casimir.cpp ./src/anisotropic_averaging.lo ./src/initialize.o ./src/sphere-quad.o ./src/boundaries.cpp ./src/h5fields.cpp ./src/sources.cpp ./src/bicgstab.hpp ./src/energy_and_flux.lo ./src/step_generic.o ./src/array_slice.cpp ./src/step_db.o ./src/output_directory.lo ./src/monitor.o ./src/fields.cpp ./src/initialize.cpp ./src/sphere-quad.h ./src/loop_in_chunks.o ./src/fields.o ./src/dft_ldos.cpp ./src/random.o ./src/step_generic_stride1.lo ./src/boundaries.lo ./src/mympi.lo ./src/susceptibility.lo ./src/dft.lo ./src/time.cpp ./src/mpb.lo ./src/meep ./src/meep/mympi.hpp ./src/meep/vec.hpp ./src/libmeep.la ./src/mpb.o ./src/step_generic_stride1.o ./src/h5fields.o ./src/h5file.o ./src/output_directory.cpp ./src/sphere-quad.cpp ./src/step.o ./src/meep_internals.hpp ./src/vec.cpp ./src/susceptibility.cpp ./src/sources.o ./src/energy_and_flux.cpp ./src/loop_in_chunks.cpp ./src/structure.lo ./src/mympi.cpp ./src/sphere_quad ./src/susceptibility.o ./src/multilevel-atom.o ./src/boundaries.o ./src/multilevel-atom.lo ./src/bicgstab.cpp ./src/cw_fields.o ./src/output_directory.o ./src/array_slice.lo ./src/cw_fields.cpp ./src/integrate.o ./src/meepgeom.o ./src/h5fields.lo ./src/Makefile.am ./src/update_pols.o ./src/random.cpp ./config.h ./config.status ./ltmain.sh ./autogen.sh ./python ./python/adjoint ./python/adjoint/__init__.py ./python/adjoint/filter_source.py ./python/adjoint/optimization_problem.py ./python/adjoint/objective.py ./python/adjoint/basis.py ./python/adjoint/filters.py ./python/meep-python.cxx ./python/__init__.py ./python/verbosity_mgr.py ./python/examples ./python/examples/mpb_hole_slab.py ./python/examples/cyl-ellipsoid.py ./python/examples/media ./python/examples/media/holey-wvg-bands-0.3-0.8838.mp4 ./python/examples/media/holey-wvg-bands-0.4-0.1896.mp4 ./python/examples/media/oblique-source-normal.mp4 ./python/examples/media/ring_mid.mp4 ./python/examples/media/hole-wvg-cavity-res.mp4 ./python/examples/media/holey-wvg-bands-0.25-0.2506.mp4 ./python/examples/media/holey-wvg-bands-0.1-0.4811.mp4 ./python/examples/media/visualization_demo.gif ./python/examples/media/visualization_normalize.mp4 ./python/examples/media/bent_waveguide.mp4 ./python/examples/media/oblique-source-eig.mp4 ./python/examples/media/holey-wvg-bands-0.4-0.3175.mp4 ./python/examples/media/straight_waveguide.mp4 ./python/examples/media/ring_large.mp4 ./python/examples/media/hole-wvg-cavity.mp4 ./python/examples/media/visualization_demo.mp4 ./python/examples/media/ring_simple.mp4 ./python/examples/media/visualization_out_plane.mp4 ./python/examples/binary_grating.ipynb ./python/examples/cavity_arrayslice.py ./python/examples/solve-cw.py ./python/examples/stochastic_emitter.ipynb ./python/examples/polarization_grating.py ./python/examples/mpb_bragg_sine.py ./python/examples/perturbation_theory_2d.py ./python/examples/oblique-planewave.py ./python/examples/straight-waveguide.py ./python/examples/binary_grating_phasemap.ipynb ./python/examples/refl-angular.ipynb ./python/examples/refl-quartz.py ./python/examples/mpb_tri_holes.py ./python/examples/cylinder_cross_section.ipynb ./python/examples/material-dispersion.py ./python/examples/coupler.py ./python/examples/chirped_pulse.py ./python/examples/bend-flux.ipynb ./python/examples/bent-waveguide.ipynb ./python/examples/wvg-src.py ./python/examples/parallel-wvgs-force.ipynb ./python/examples/mpb_strip.py ./python/examples/zone_plate.ipynb ./python/examples/faraday-rotation.py ./python/examples/pw-source.py ./python/examples/refl-angular-kz2d.py ./python/examples/3rd-harm-1d.py ./python/examples/mpb_bragg.py ./python/examples/finite_grating.py ./python/examples/binary_grating_oblique.py ./python/examples/holey-wvg-cavity.ipynb ./python/examples/antenna-radiation.py ./python/examples/absorber-1d.py ./python/examples/cavity-farfield.ipynb ./python/examples/mpb_data_analysis.py ./python/examples/mpb_sq_rods.py ./python/examples/mpb_line_defect.py ./python/examples/3rd-harm-1d.ipynb ./python/examples/mie_scattering.ipynb ./python/examples/coupler.gds ./python/examples/mode-decomposition.ipynb ./python/examples/metasurface_lens.ipynb ./python/examples/oblique-planewave.ipynb ./python/examples/mpb_tri_rods.py ./python/examples/cavity-farfield.py ./python/examples/oblique-source.py ./python/examples/coupler.ipynb ./python/examples/binary_grating_n2f.py ./python/examples/holey-wvg-bands.py ./python/examples/ring.ipynb ./python/examples/parallel-wvgs-force.py ./python/examples/absorbed_power_density.py ./python/examples/antenna-radiation.ipynb ./python/examples/stochastic_emitter_line.py ./python/examples/phase_in_material.py ./python/examples/bent-waveguide.py ./python/examples/metasurface_lens.py ./python/examples/mpb_honey_rods.py ./python/examples/perturbation_theory.ipynb ./python/examples/adjoint_optimization ./python/examples/adjoint_optimization/05-Minimax.ipynb ./python/examples/adjoint_optimization/02-Waveguide_Bend.ipynb ./python/examples/adjoint_optimization/01-Introduction.ipynb ./python/examples/adjoint_optimization/04-Splitter.ipynb ./python/examples/adjoint_optimization/Fourier Fields Optimization in Waveguide Bend.ipynb ./python/examples/adjoint_optimization/Near2Far-Optimization-with-Epigraph-Formulation.ipynb ./python/examples/adjoint_optimization/03-Filtered_Waveguide_Bend.ipynb ./python/examples/cylinder_cross_section.py ./python/examples/binary_grating_oblique.ipynb ./python/examples/differential_cross_section.py ./python/examples/absorbed_power_density.ipynb ./python/examples/finite_grating.ipynb ./python/examples/metal-cavity-ldos.py ./python/examples/mie_scattering.py ./python/examples/oblique-source.ipynb ./python/examples/gaussian-beam.py ./python/examples/ring-cyl.py ./python/examples/stochastic_emitter.py ./python/examples/solve-cw.ipynb ./python/examples/refl-angular.py ./python/examples/mpb_tutorial.py ./python/examples/ring_gds.py ./python/examples/parallel-wvgs-mpb.py ./python/examples/differential_cross_section.ipynb ./python/examples/bend-flux.py ./python/examples/ring.py ./python/examples/holey-wvg-cavity.py ./python/examples/mode-decomposition.py ./python/examples/holey-wvg-bands.ipynb ./python/examples/ring-mode-overlap.py ./python/examples/zone_plate.py ./python/examples/metal-cavity-ldos.ipynb ./python/examples/multilevel-atom.py ./python/examples/refl-quartz.ipynb ./python/examples/perturbation_theory.py ./python/examples/mpb_diamond.py ./python/examples/binary_grating_phasemap.py ./python/examples/binary_grating_n2f.ipynb ./python/examples/README.md ./python/examples/straight-waveguide.ipynb ./python/examples/binary_grating.py ./python/examples/polarization_grating.ipynb ./python/examples/diffracted_planewave.py ./python/examples/cherenkov-radiation.py ./python/meep.i ./python/.libs ./python/.libs/_meep.so.23.0.1 ./python/.libs/_meep.a ./python/.libs/_meep.so.23.0.1T ./python/.libs/_meep.so.23 ./python/.libs/_meep.la ./python/.libs/_meep.so ./python/.libs/_meep_la-meep-python.o ./python/.libs/_meep.lai ./python/geom.py ./python/Makefile ./python/solver.py ./python/mpb.i ./python/Makefile.in ./python/_meep.la ./python/_meep_la-meep-python.lo ./python/mpb_data.py ./python/visualization.py ./python/_meep_la-meep-python.o ./python/materials.py ./python/vec.i ./python/meep ./python/meep/__init__.py ./python/meep/verbosity_mgr.py ./python/meep/geom.py ./python/meep/_meep.so ./python/meep/visualization.py ./python/meep/materials.py ./python/meep/__pycache__ ./python/meep/__pycache__/geom.cpython-39.pyc ./python/meep/__pycache__/verbosity_mgr.cpython-39.pyc ./python/meep/__pycache__/materials.cpython-39.pyc ./python/meep/__pycache__/visualization.cpython-39.pyc ./python/meep/__pycache__/__init__.cpython-39.pyc ./python/meep/__pycache__/source.cpython-39.pyc ./python/meep/__pycache__/simulation.cpython-39.pyc ./python/meep/source.py ./python/meep/simulation.py ./python/tests ./python/tests/eigfreq.trs ./python/tests/eigfreq.log ./python/tests/ldos.trs ./python/tests/simulation.trs ./python/tests/special_kz.trs ./python/tests/cavity_arrayslice.py ./python/tests/dft_fields.py ./python/tests/bend_flux.log ./python/tests/holey_wvg_bands.py ./python/tests/oblique_source.py ./python/tests/kdom.py ./python/tests/mode_decomposition.py ./python/tests/3rd_harm_1d.py ./python/tests/field_functions.log ./python/tests/user_defined_material.log ./python/tests/pw_source.trs ./python/tests/wvg_src.py ./python/tests/cavity_farfield.py ./python/tests/physical.log ./python/tests/geom.trs ./python/tests/material_dispersion.py ./python/tests/eigfreq.py ./python/tests/antenna_radiation.py ./python/tests/gaussianbeam.log ./python/tests/fragment_stats.trs ./python/tests/medium_evaluations.log ./python/tests/mode_coeffs.py ./python/tests/material_grid.log ./python/tests/visualization.log ./python/tests/array_metadata.py ./python/tests/n2f_periodic.py ./python/tests/refl_angular.trs ./python/tests/ring_cyl.log ./python/tests/gaussianbeam.trs ./python/tests/multilevel_atom.trs ./python/tests/medium_evaluations.py ./python/tests/array_metadata.log ./python/tests/prism.trs ./python/tests/absorber_1d.trs ./python/tests/geom.py ./python/tests/divide_mpi_processes.trs ./python/tests/medium_evaluations.trs ./python/tests/force.trs ./python/tests/pw_source.log ./python/tests/get_point.trs ./python/tests/cavity_farfield.log ./python/tests/array_metadata.trs ./python/tests/ring_cyl.trs ./python/tests/source.trs ./python/tests/absorber_1d.log ./python/tests/faraday_rotation.log ./python/tests/multilevel_atom.py ./python/tests/get_point.py ./python/tests/cyl_ellipsoid.trs ./python/tests/refl_angular.log ./python/tests/bend_flux.py ./python/tests/faraday_rotation.py ./python/tests/cavity_arrayslice.log ./python/tests/oblique_source.log ./python/tests/force.py ./python/tests/source.log ./python/tests/geom.log ./python/tests/refl_angular.py ./python/tests/visualization.py ./python/tests/pw_source.py ./python/tests/dft_energy.trs ./python/tests/physical.trs ./python/tests/visualization.trs ./python/tests/material_grid.trs ./python/tests/simulation.log ./python/tests/gaussianbeam.py ./python/tests/physical.py ./python/tests/chunks.py ./python/tests/chunks.log ./python/tests/special_kz.log ./python/tests/ring_cyl.py ./python/tests/special_kz.py ./python/tests/holey_wvg_cavity.trs ./python/tests/test_verbosity_mgr.py ./python/tests/dft_energy.py ./python/tests/divide_mpi_processes.log ./python/tests/prism.py ./python/tests/ldos.py ./python/tests/dft_fields.trs ./python/tests/antenna_radiation.log ./python/tests/n2f_periodic.trs ./python/tests/cyl_ellipsoid.log ./python/tests/cavity_farfield.trs ./python/tests/holey_wvg_cavity.py ./python/tests/dispersive_eigenmode.py ./python/tests/mpb.py ./python/tests/field_functions.py ./python/tests/n2f_periodic.log ./python/tests/divide_mpi_processes.py ./python/tests/fragment_stats.py ./python/tests/holey_wvg_bands.trs ./python/tests/data ./python/tests/data/strip-flux.v.k01.b04.x.h5 ./python/tests/data/tutorial-te-eigenvectors.h5 ./python/tests/data/hole-slab-h.k01.b09.z.zeven.h5 ./python/tests/data/tutorial-b.k16.b08.te.h5 ./python/tests/data/tri-rods-e.k11.b08.z.tm-r-m3-n32.h5 ./python/tests/data/tri-rods-epsilon-r-m3-n32.h5 ./python/tests/data/tutorial-C.k16.b08.te.h5 ./python/tests/data/subpixel_avg-epsilon.h5 ./python/tests/data/convex_prism_vertices.npz ./python/tests/data/tutorial-d.k16.b02.te.h5 ./python/tests/data/cavity_arrayslice_2d.npy ./python/tests/data/line-defect-e.k04.b12.z.tm.h5 ./python/tests/data/nonconvex_prism_vertices1.npz ./python/tests/data/tutorial-te-eigenvectors-3-3.h5 ./python/tests/data/tri-rods-e.k11.b08.z.tm.h5 ./python/tests/data/converted-tri-rods-e.k11.b08.tm.h5 ./python/tests/data/bragg-h.k01.b08.y.tm.h5 ./python/tests/data/tutorial-mu.h5 ./python/tests/data/amp_func_file.h5 ./python/tests/data/tutorial-d.k16.b08.te.h5 ./python/tests/data/cavity-farfield-4-freqs.h5 ./python/tests/data/bend-flux.gds ./python/tests/data/tutorial-epsilon.h5 ./python/tests/data/cavity_arrayslice_1d.npy ./python/tests/data/tutorial-flux.v.k11.b08.te.h5 ./python/tests/data/tutorial-e.k16.b08.te.h5 ./python/tests/data/tutorial-d.k01.b02.te.h5 ./python/tests/data/diamond-dpwr.k06.b05.h5 ./python/tests/data/tutorial-e.k16.b08.z.tm.h5 ./python/tests/data/nonconvex_prism_vertices2.npz ./python/tests/data/spiral.gds ./python/tests/data/nonconvex_prism_vertices3.npz ./python/tests/data/eps_input_file_test.h5 ./python/tests/data/tutorial-te-eigenvectors-8-1.h5 ./python/tests/data/tutorial-tot.rpwr.k16.b08.te.h5 ./python/tests/data/tutorial-h.k16.b08.te.h5 ./python/tests/data/converted-diamond-dpwr.k06.b05.h5 ./python/tests/data/cavity-farfield.h5 ./python/tests/user_defined_material.trs ./python/tests/chunks.trs ./python/tests/oblique_source.trs ./python/tests/utils.py ./python/tests/dft_fields.log ./python/tests/prism.log ./python/tests/dft_energy.log ./python/tests/force.log ./python/tests/holey_wvg_cavity.log ./python/tests/__pycache__ ./python/tests/__pycache__/utils.cpython-39.pyc ./python/tests/3rd_harm_1d.trs ./python/tests/multilevel_atom.log ./python/tests/fragment_stats.log ./python/tests/holey_wvg_bands.log ./python/tests/antenna_radiation.trs ./python/tests/ring.py ./python/tests/faraday_rotation.trs ./python/tests/cavity_arrayslice.trs ./python/tests/ldos.log ./python/tests/ring.trs ./python/tests/source.py ./python/tests/ring.log ./python/tests/simulation.py ./python/tests/absorber_1d.py ./python/tests/material_grid.py ./python/tests/3rd_harm_1d.log ./python/tests/cyl_ellipsoid.py ./python/tests/bend_flux.trs ./python/tests/field_functions.trs ./python/tests/binary_grating.py ./python/tests/get_point.log ./python/tests/user_defined_material.py ./python/tests/diffracted_planewave.py ./python/numpy.i ./python/typemap_utils.cpp ./python/source.py ./python/meep.py ./python/test-suite.log ./python/simulation.py ./python/Makefile.am ./.gitattributes ./configure ./debian ./debian/python3-meep-openmpi.postinst ./debian/libmeep-openmpi-dev ./debian/libmeep-openmpi-dev/usr ./debian/libmeep-openmpi-dev/usr/share ./debian/libmeep-openmpi-dev/usr/share/doc ./debian/libmeep-openmpi-dev/usr/share/doc/libmeep-openmpi-dev ./debian/libmeep-openmpi-dev/usr/share/doc/libmeep-openmpi-dev/changelog ./debian/libmeep-openmpi-dev/usr/share/doc/libmeep-openmpi-dev/changelog.Debian ./debian/libmeep-openmpi-dev.install ./debian/source ./debian/source/format ./debian/source/lintian-overrides ./debian/meep-openmpi.docs ./debian/libmeep-openmpi23.debhelper.log ./debian/autoreconf.before ./debian/python3-meep-openmpi.prerm ./debian/changelog ./debian/autoreconf.after ./debian/debhelper-build-stamp ./debian/python3-meep-openmpi.install ./debian/libmeep-openmpi-dev.debhelper.log ./debian/meep-openmpi ./debian/meep-openmpi/usr ./debian/meep-openmpi/usr/share ./debian/meep-openmpi/usr/share/doc ./debian/meep-openmpi/usr/share/doc/meep-openmpi ./debian/meep-openmpi/usr/share/doc/meep-openmpi/changelog ./debian/meep-openmpi/usr/share/doc/meep-openmpi/changelog.Debian ./debian/patches ./debian/patches/series ./debian/libmeep-openmpi23.install ./debian/copyright ./debian/tmp ./debian/tmp/usr ./debian/tmp/usr/bin ./debian/tmp/usr/bin/meep ./debian/tmp/usr/lib ./debian/tmp/usr/lib/python3.9 ./debian/tmp/usr/lib/python3.9/site-packages ./debian/tmp/usr/lib/python3.9/site-packages/meep ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__init__.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/filter_source.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/optimization_problem.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__ ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/basis.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/__init__.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/objective.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/filter_source.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/objective.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/filters.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/__init__.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/optimization_problem.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/optimization_problem.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/filter_source.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/basis.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/filters.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/objective.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/basis.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/filters.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.so.23.0.1 ./debian/tmp/usr/lib/python3.9/site-packages/meep/__init__.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/verbosity_mgr.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/geom.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.a ./debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.so.23 ./debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.la ./debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.so ./debian/tmp/usr/lib/python3.9/site-packages/meep/visualization.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/materials.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__ ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/source.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/geom.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/verbosity_mgr.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/materials.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/__init__.cpython-39.opt-1.pyc 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./debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig ./debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/meep.pc ./debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.a ./debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.so.23.0.1 ./debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.la ./debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.so ./debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.so.23 ./debian/tmp/usr/share ./debian/tmp/usr/share/meep ./debian/tmp/usr/share/meep/meep-enums.scm ./debian/tmp/usr/share/meep/materials.scm ./debian/tmp/usr/share/meep/casimir.scm ./debian/tmp/usr/share/meep/meep.scm ./debian/tmp/usr/include ./debian/tmp/usr/include/meep.hpp ./debian/tmp/usr/include/meep ./debian/tmp/usr/include/meep/material_data.hpp ./debian/tmp/usr/include/meep/meepgeom.hpp ./debian/tmp/usr/include/meep/adjust_verbosity.hpp ./debian/tmp/usr/include/meep/mympi.hpp ./debian/tmp/usr/include/meep/vec.hpp ./debian/README.source ./debian/meep-openmpi.install ./debian/libmeep-openmpi23 ./debian/libmeep-openmpi23/usr ./debian/libmeep-openmpi23/usr/share ./debian/libmeep-openmpi23/usr/share/doc ./debian/libmeep-openmpi23/usr/share/doc/libmeep-openmpi23 ./debian/libmeep-openmpi23/usr/share/doc/libmeep-openmpi23/changelog ./debian/libmeep-openmpi23/usr/share/doc/libmeep-openmpi23/changelog.Debian ./debian/control ./debian/python3-meep-openmpi.debhelper.log ./debian/libmeep-openmpi23.lintian-overrides ./debian/rules ./debian/docs ./debian/meep-openmpi.1 ./debian/watch ./debian/meep-openmpi.debhelper.log ./debian/python3-meep-openmpi ./debian/python3-meep-openmpi/usr ./debian/python3-meep-openmpi/usr/share ./debian/python3-meep-openmpi/usr/share/doc ./debian/python3-meep-openmpi/usr/share/doc/python3-meep-openmpi ./debian/python3-meep-openmpi/usr/share/doc/python3-meep-openmpi/changelog ./debian/python3-meep-openmpi/usr/share/doc/python3-meep-openmpi/changelog.Debian ./debian/meep-openmpi.manpages ./stamp-h1 ./contrib ./contrib/build-meep.sh ./meep-pkgconfig ./version.sh ./depcomp ./aclocal.m4 ./meep.pc ./install-sh ./scheme ./scheme/meep.cpp ./scheme/main.cpp ./scheme/meep-ctl-const.hpp ./scheme/meep_renames.i ./scheme/meep-ctl.hpp ./scheme/examples ./scheme/examples/metal-cavity-ldos.ctl ./scheme/examples/mode-coeffs.ctl ./scheme/examples/polarization_grating.ctl ./scheme/examples/binary_grating_phasemap.ctl ./scheme/examples/absorbed-power-density.ctl ./scheme/examples/differential-cross-section.ctl ./scheme/examples/cavity-farfield.ctl ./scheme/examples/mode-decomposition.ctl ./scheme/examples/holey-wvg-bands.ctl ./scheme/examples/holey-wvg-cavity.ctl ./scheme/examples/binary_grating_oblique.ctl ./scheme/examples/parallel-wvgs-mpb.ctl ./scheme/examples/gaussian-beam.ctl ./scheme/examples/stochastic-emitter.ctl ./scheme/examples/metasurface_lens_phasemap.ctl ./scheme/examples/finite_grating.ctl ./scheme/examples/group-velocity.ctl ./scheme/examples/faraday-rotation.ctl ./scheme/examples/metasurface_lens_farfield.ctl ./scheme/examples/pw-source.ctl ./scheme/examples/antenna-radiation.ctl ./scheme/examples/perturbation-theory-2d.ctl ./scheme/examples/oblique-planewave.ctl ./scheme/examples/straight-waveguide.ctl ./scheme/examples/cylinder-cross-section.ctl ./scheme/examples/bent-waveguide.ctl ./scheme/examples/binary_grating.ctl ./scheme/examples/zone-plate.ctl ./scheme/examples/refl-angular.ctl ./scheme/examples/3rd-harm-1d.ctl ./scheme/examples/multilevel-atom.ctl ./scheme/examples/refl-quartz.ctl ./scheme/examples/ring.ctl ./scheme/examples/oblique-source.ctl ./scheme/examples/refl-angular-kz2d.ctl ./scheme/examples/mie-scattering.ctl ./scheme/examples/perturbation-theory.ctl ./scheme/examples/solve-cw.ctl ./scheme/examples/material-dispersion.ctl ./scheme/examples/ring-cyl.ctl ./scheme/examples/cherenkov-radiation.ctl ./scheme/examples/wvg_src.ctl ./scheme/examples/chirped-pulse.ctl ./scheme/examples/binary_grating_n2f.ctl ./scheme/examples/bend-flux.ctl ./scheme/examples/parallel-wvgs-force.ctl ./scheme/ctl-io.cpp ./scheme/meep.i ./scheme/meep-ctl-swig.hpp ./scheme/.libs ./scheme/.libs/meep ./scheme/meep-enums.scm ./scheme/Makefile ./scheme/materials.scm ./scheme/meep_enum_renames.i ./scheme/meep_op_renames.i ./scheme/Makefile.in ./scheme/meep-meep_wrap.o ./scheme/meep-meep.o ./scheme/geom.cpp ./scheme/structure.cpp ./scheme/meep_swig_bug_workaround.i ./scheme/meep_wrap.cxx.orig ./scheme/casimir.scm ./scheme/meep-geom.o ./scheme/meep-ctl-io.o ./scheme/meep-structure.o ./scheme/ctl-io.i ./scheme/meep ./scheme/meep_wrap.cxx.bak ./scheme/meep.scm.in ./scheme/ctl-io.h ./scheme/meep_wrap.patch ./scheme/meep-main.o ./scheme/Makefile.am ./scheme/meep.scm ./scheme/meep_wrap.cxx ./config.h.in ./codemeta.json ./Makefile ./AUTHORS ./m4 ./m4/ltversion.m4 ./m4/ax_openmp.m4 ./m4/pkg.m4 ./m4/libtool.m4 ./m4/ax_compiler_vendor.m4 ./m4/ltoptions.m4 ./m4/acx_blas.m4 ./m4/ax_gcc_archflag.m4 ./m4/acx_lapack.m4 ./m4/lt~obsolete.m4 ./m4/acx_mpi.m4 ./m4/ax_check_compiler_flags.m4 ./m4/ax_gcc_x86_cpuid.m4 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./doc/docs/mdx_math.py ./doc/docs/Replacements.vim ./doc/docs/License_and_Copyright.md ./doc/docs/mathjaxhelper.js ./doc/README.md ./config.log ./LICENSE ./README.md ./Makefile.am ./.mailmap ./TODO ./compile rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.pyc rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.pyo rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.a rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.la rm -f debian/tmp/usr/lib/python*/site-packages/meep/mpb/*.pyc rm -f debian/tmp/usr/lib/python*/site-packages/meep/mpb/*.pyo rm -f debian/tmp/usr/lib/python*/site-packages/meep/mpb/*.a rm -f debian/tmp/usr/lib/python*/site-packages/meep/mpb/*.la rm -f -rf debian/tmp/usr/lib/python*/site-packages/meep/__pycache__/ rm -f -rf debian/tmp/usr/lib/python*/site-packages/meep/adjoint/__pycache__/ make[1]: Leaving directory '/build/meep-openmpi-IYxmPf/meep-openmpi-1.17.1' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_missing: warning: usr/lib/x86_64-linux-gnu/libmeep.la exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: libmeep-openmpi-dev (4), libmeep-openmpi23 (3), meep-openmpi (1), python3-meep-openmpi (1) * dh_installdocs: libmeep-openmpi-dev (0), libmeep-openmpi23 (0), meep-openmpi (1), python3-meep-openmpi (0) * dh_installman: libmeep-openmpi-dev (0), libmeep-openmpi23 (0), meep-openmpi (1), python3-meep-openmpi (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. Remember to be careful with paths containing "x86_64-linux-gnu", where you might need to use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed to ensure it works on all architectures (see #961104). dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/python3-meep-openmpi/usr/lib/python3/dist-packages/meep/_meep.so.23.0.1 contains an unresolvable reference to symbol PyLong_AsDouble: it's probably a plugin dpkg-shlibdeps: warning: 108 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'meep-openmpi' in '../meep-openmpi_1.17.1-2_amd64.deb'. dpkg-deb: building package 'libmeep-openmpi-dev' in '../libmeep-openmpi-dev_1.17.1-2_amd64.deb'. dpkg-deb: building package 'python3-meep-openmpi-dbgsym' in '../python3-meep-openmpi-dbgsym_1.17.1-2_amd64.deb'. dpkg-deb: building package 'libmeep-openmpi23' in '../libmeep-openmpi23_1.17.1-2_amd64.deb'. dpkg-deb: building package 'meep-openmpi-dbgsym' in '../meep-openmpi-dbgsym_1.17.1-2_amd64.deb'. dpkg-deb: building package 'libmeep-openmpi23-dbgsym' in '../libmeep-openmpi23-dbgsym_1.17.1-2_amd64.deb'. dpkg-deb: building package 'python3-meep-openmpi' in '../python3-meep-openmpi_1.17.1-2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../meep-openmpi_1.17.1-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/meep-openmpi-IYxmPf /tmp/meep-openmpi-1.17.1-20yjyviph I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.O0yjwbN7J0... I: success in 2803.1840 seconds md5: libmeep-openmpi-dev_1.17.1-2_amd64.deb: OK md5: libmeep-openmpi23-dbgsym_1.17.1-2_amd64.deb: OK md5: libmeep-openmpi23_1.17.1-2_amd64.deb: OK md5: meep-openmpi-dbgsym_1.17.1-2_amd64.deb: OK md5: meep-openmpi_1.17.1-2_amd64.deb: OK md5: python3-meep-openmpi-dbgsym_1.17.1-2_amd64.deb: OK md5: python3-meep-openmpi_1.17.1-2_amd64.deb: OK sha1: libmeep-openmpi-dev_1.17.1-2_amd64.deb: OK sha1: libmeep-openmpi23-dbgsym_1.17.1-2_amd64.deb: OK sha1: libmeep-openmpi23_1.17.1-2_amd64.deb: OK sha1: meep-openmpi-dbgsym_1.17.1-2_amd64.deb: OK sha1: meep-openmpi_1.17.1-2_amd64.deb: OK sha1: python3-meep-openmpi-dbgsym_1.17.1-2_amd64.deb: OK sha1: python3-meep-openmpi_1.17.1-2_amd64.deb: OK sha256: libmeep-openmpi-dev_1.17.1-2_amd64.deb: OK sha256: libmeep-openmpi23-dbgsym_1.17.1-2_amd64.deb: OK sha256: libmeep-openmpi23_1.17.1-2_amd64.deb: OK sha256: meep-openmpi-dbgsym_1.17.1-2_amd64.deb: OK sha256: meep-openmpi_1.17.1-2_amd64.deb: OK sha256: python3-meep-openmpi-dbgsym_1.17.1-2_amd64.deb: OK sha256: python3-meep-openmpi_1.17.1-2_amd64.deb: OK Checksums: OK