Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/mdanalysis/mdanalysis_2.0.0+dfsg1-4_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/mdanalysis-2.0.0+dfsg1-4q2ycenri/mdanalysis_2.0.0+dfsg1-4_amd64.buildinfo Get source package info: mdanalysis=2.0.0+dfsg1-4 Source URL: http://snapshot.notset.fr/mr/package/mdanalysis/2.0.0+dfsg1-4/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.38-1 binutils-common=2.38-1 binutils-x86-64-linux-gnu=2.38-1 blt=2.5.3+dfsg-4.1 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-16 cython3=0.29.24-2 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 dh-autoreconf=20 dh-python=5.20220215 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 docutils-common=0.17.1+dfsg-2 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fontconfig-config=2.13.1-4.4 fonts-dejavu-core=2.37-2 fonts-lyx=2.3.6-1 fonts-urw-base35=20200910-1 g++=4:11.2.0-2 g++-11=11.2.0-16 gcc=4:11.2.0-2 gcc-11=11.2.0-16 gcc-11-base=11.2.0-16 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec0=1.0.6-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-16 libatomic1=11.2.0-16 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1 libbinutils=2.38-1 libblas3=3.10.0-2 libblkid1=2.37.3-1+b1 libbrotli1=1.0.9-2+b3 libbsd0=0.11.5-1+b1 libbz2-1.0=1.0.8-5 libc-bin=2.33-6 libc-dev-bin=2.33-6 libc6=2.33-6 libc6-dev=2.33-6 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-16 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-1 libctf0=2.38-1 libcurl3-gnutls=7.81.0-1 libcurl4=7.81.0-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdeflate0=1.9-1 libdpkg-perl=1.21.1 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.4-1 libexpat1-dev=2.4.4-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libfontconfig1=2.13.1-4.4 libfreetype6=2.11.1+dfsg-1 libfribidi0=1.0.8-2 libgcc-11-dev=11.2.0-16 libgcc-s1=11.2.0-16 libgcrypt20=1.9.4-5 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgfortran5=11.2.0-16 libglib2.0-0=2.70.4-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.3-4+b1 libgomp1=11.2.0-16 libgpg-error0=1.43-3 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libharfbuzz0b=2.7.4-1 libhdf5-103-1=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libimagequant0=2.17.0-1 libisl23=0.24-2 libitm1=11.2.0-16 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.1.2-1 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjs-jquery-ui=1.13.1+dfsg-1 libjs-sphinxdoc=4.3.2-1 libjs-underscore=1.13.2~dfsg-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-2 liblbfgsb0=3.0+dfsg.3-10 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.59+dfsg-1+b1 liblsan0=11.2.0-16 liblz4-1=1.9.3-2 liblzf1=3.6-3 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libmount1=2.37.3-1+b1 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.3-2 libncursesw6=6.3-2 libnetcdf19=1:4.8.1-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopenjp2-7=2.4.0-6 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.34=5.34.0-3 libpipeline1=1.5.5-1 libpng16-16=1.6.37-3 libprocps8=2:3.3.17-6 libpsl5=0.21.0-1.2 libpython3-all-dev=3.9.8-1 libpython3-dev=3.9.8-1 libpython3-stdlib=3.9.8-1 libpython3.10=3.10.2-1 libpython3.10-dev=3.10.2-1 libpython3.10-minimal=3.10.2-1 libpython3.10-stdlib=3.10.2-1 libpython3.9=3.9.10-1 libpython3.9-dev=3.9.10-1 libpython3.9-minimal=3.9.10-1 libpython3.9-stdlib=3.9.10-1 libqhull-r8.0=2020.2-4 libquadmath0=11.2.0-16 libraqm0=0.7.0-4 libreadline8=8.1.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-3 libsasl2-modules-db=2.1.27+dfsg2-3 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.14-1 libsmartcols1=2.37.3-1+b1 libsqlite3-0=3.37.2-2 libssh2-1=1.10.0-2 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-16 libstdc++6=11.2.0-16 libsub-override-perl=0.09-2 libsystemd0=250.3-2 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libtcl8.6=8.6.12+dfsg-1 libtiff5=4.3.0-4+b1 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtk8.6=8.6.12-1 libtool=2.4.6-15 libtsan0=11.2.0-16 libubsan1=11.2.0-16 libuchardet0=0.0.7-1 libudev1=250.3-2 libunistring2=1.0-1 libuuid1=2.37.3-1+b1 libwebp7=1.2.1-7 libwebpdemux2=1.2.1-7 libwebpmux3=1.2.1-7 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxft2=2.3.2-2 libxml2=2.9.12+dfsg-5+b1 libxrender1=1:0.9.10-1 libxslt1.1=1.1.34-4 libxss1=1:1.2.3-1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.16.7-2 login=1:4.11.1+dfsg1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.70+nmu1 make=4.3-4.1 man-db=2.10.1-1 mawk=1.3.4.20200120-3+b1 media-types=5.0.0 mime-support=3.66 ncurses-base=6.3-2 ncurses-bin=6.3-2 openssl=1.1.1m-1 patch=2.7.6-7 perl=5.34.0-3 perl-base=5.34.0-3 perl-modules-5.34=5.34.0-3 po-debconf=1.0.21+nmu1 procps=2:3.3.17-6 python-babel-localedata=2.8.0+dfsg.1-7 python-matplotlib-data=3.5.1-2 python3=3.9.8-1 python3-alabaster=0.7.12-1 python3-all=3.9.8-1 python3-all-dev=3.9.8-1 python3-appdirs=1.4.4-2 python3-attr=21.2.0-1 python3-babel=2.8.0+dfsg.1-7 python3-biopython=1.79+dfsg-2 python3-brotli=1.0.9-2+b3 python3-certifi=2020.6.20-1 python3-cftime=1.5.2+ds-1 python3-chardet=4.0.0-1 python3-citeproc=0.5.1-1 python3-cycler=0.11.0-1 python3-dateutil=2.8.1-6 python3-decorator=4.4.2-2 python3-dev=3.9.8-1 python3-distutils=3.9.10-1 python3-docutils=0.17.1+dfsg-2 python3-duecredit=0.8.0-1 python3-fonttools=4.29.1-1 python3-fs=2.4.12-1 python3-griddataformats=0.6.0-1 python3-gsd=2.5.1-1 python3-h5py=3.6.0-2 python3-h5py-serial=3.6.0-2 python3-hypothesis=6.36.0-1 python3-idna=3.3-1 python3-imagesize=1.3.0-1 python3-importlib-metadata=4.6.4-1 python3-iniconfig=1.1.1-2 python3-jinja2=3.0.3-1 python3-joblib=0.17.0-4 python3-kiwisolver=1.3.2-1+b1 python3-lib2to3=3.9.10-1 python3-lxml=4.7.1-1 python3-lz4=3.1.3+dfsg-1+b1 python3-markupsafe=2.0.1-2+b1 python3-matplotlib=3.5.1-2+b1 python3-minimal=3.9.8-1 python3-mmtf=1.1.2-3 python3-mock=4.0.3-3 python3-more-itertools=8.10.0-2 python3-mpmath=1.2.1-2 python3-msgpack=1.0.3-1 python3-netcdf4=1.5.8-1 python3-networkx=2.5+ds-2 python3-numpy=1:1.21.5-1 python3-packaging=21.3-1 python3-pandas=1.3.5+dfsg-2 python3-pandas-lib=1.3.5+dfsg-2 python3-pbr=5.6.0-2 python3-pil=9.0.1-1 python3-pil.imagetk=9.0.1-1 python3-pkg-resources=59.6.0-1.2 python3-pluggy=0.13.0-7.1 python3-py=1.10.0-1 python3-pygments=2.11.2+dfsg-2 python3-pyparsing=3.0.7-1 python3-pytest=6.2.5-1 python3-renderpm=3.6.6-1 python3-reportlab=3.6.6-1 python3-reportlab-accel=3.6.6-1 python3-requests=2.25.1+dfsg-2 python3-roman=3.3-1 python3-scipy=1.7.3-2 python3-seaborn=0.11.2-3 python3-setuptools=59.6.0-1.2 python3-six=1.16.0-3 python3-sklearn=1.0.2-1 python3-sklearn-lib=1.0.2-1 python3-snowballstemmer=2.2.0-1 python3-sortedcontainers=2.1.0-2 python3-sphinx=4.3.2-1 python3-sympy=1.9-1 python3-threadpoolctl=3.1.0-1 python3-tk=3.9.10-1 python3-toml=0.10.2-1 python3-tqdm=4.57.0-2 python3-tz=2021.3-1 python3-ufolib2=0.13.1+dfsg1-1 python3-urllib3=1.26.5-1~exp1 python3-zipp=1.0.0-3 python3.10=3.10.2-1 python3.10-dev=3.10.2-1 python3.10-minimal=3.10.2-1 python3.9=3.9.10-1 python3.9-dev=3.9.10-1 python3.9-minimal=3.9.10-1 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sgml-base=1.30 sphinx-common=4.3.2-1 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 tk8.6-blt2.5=2.5.3+dfsg-4.1 tzdata=2021e-1 ucf=3.0043 unicode-data=14.0.0-1.1 util-linux=2.37.3-1+b1 w3-dtd-mathml=2.0.0.0-5.1 x11-common=1:7.7+23 xml-core=0.18+nmu1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220221T025413Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220221T025413Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220323T210951Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220218T095549Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d mdanalysis=2.0.0+dfsg1-4 && mkdir -p /build/mdanalysis-axmzeb && dpkg-source --no-check -x /*.dsc /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1 && chown -R builduser:builduser /build/mdanalysis-axmzeb" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1645201065" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/mdanalysis-axmzeb /tmp/mdanalysis-2.0.0+dfsg1-4q2ycenri bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220218T095549Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.yCDUrwARMN as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.yCDUrwARMN Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220218T095549Z unstable/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220218T095549Z unstable/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (1086 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4696 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-6) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220221T025413Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220221T025413Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220323T210951Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220218T095549Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.yCDUrwARMN Get:1 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220323T210951Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220218T095549Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main Sources [11.9 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main amd64 Packages [11.3 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220323T210951Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220323T210951Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220323T210951Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220323T210951Z unstable/main amd64 Packages [12.4 MB] Fetched 35.8 MB in 29s (1230 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.yCDUrwARMN I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d mdanalysis=2.0.0+dfsg1-4 && mkdir -p /build/mdanalysis-axmzeb && dpkg-source --no-check -x /*.dsc /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1 && chown -R builduser:builduser /build/mdanalysis-axmzeb"' exec /tmp/mmdebstrap.yCDUrwARMN Reading package lists... NOTICE: 'mdanalysis' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/mdanalysis.git Please use: git clone https://salsa.debian.org/debichem-team/mdanalysis.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 44.1 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main mdanalysis 2.0.0+dfsg1-4 (dsc) [2793 B] Get:2 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main mdanalysis 2.0.0+dfsg1-4 (tar) [44.1 MB] Get:3 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main mdanalysis 2.0.0+dfsg1-4 (diff) [8828 B] Fetched 44.1 MB in 34s (1288 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'mdanalysis_2.0.0+dfsg1-4.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting mdanalysis in /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1 dpkg-source: info: unpacking mdanalysis_2.0.0+dfsg1.orig.tar.xz dpkg-source: info: unpacking mdanalysis_2.0.0+dfsg1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying docs_use_built_module.patch dpkg-source: info: applying docs_no_logo.patch dpkg-source: info: applying docs_missing_sphinx_sitemap.patch dpkg-source: info: applying docs_sphinx_warnings_are_not_errors.patch dpkg-source: info: applying tests_floating_point.patch dpkg-source: info: applying docs_local_mathjax.patch dpkg-source: info: applying docs_privacy.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1645201065" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.yCDUrwARMN dpkg-buildpackage: info: source package mdanalysis dpkg-buildpackage: info: source version 2.0.0+dfsg1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from mdanalysis-2.0.0+dfsg1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ fakeroot debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py clean Attempting to autodetect OpenMP support... Compiler supports OpenMP Will attempt to use Cython. Compiling MDAnalysis/lib/formats/libdcd.pyx because it changed. Compiling MDAnalysis/lib/c_distances.pyx because it changed. Compiling MDAnalysis/lib/c_distances_openmp.pyx because it changed. Compiling MDAnalysis/lib/qcprot.pyx because it changed. Compiling MDAnalysis/lib/formats/libmdaxdr.pyx because it changed. Compiling MDAnalysis/lib/formats/cython_util.pyx because it changed. Compiling MDAnalysis/analysis/encore/cutils.pyx because it changed. Compiling MDAnalysis/analysis/encore/clustering/affinityprop.pyx because it changed. Compiling MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx because it changed. Compiling MDAnalysis/lib/_cutil.pyx because it changed. Compiling MDAnalysis/lib/_augment.pyx because it changed. Compiling MDAnalysis/lib/nsgrid.pyx because it changed. [ 1/12] Cythonizing MDAnalysis/analysis/encore/clustering/affinityprop.pyx [ 2/12] Cythonizing MDAnalysis/analysis/encore/cutils.pyx [ 3/12] Cythonizing MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx [ 4/12] Cythonizing MDAnalysis/lib/_augment.pyx [ 5/12] Cythonizing MDAnalysis/lib/_cutil.pyx [ 6/12] Cythonizing MDAnalysis/lib/c_distances.pyx [ 7/12] Cythonizing MDAnalysis/lib/c_distances_openmp.pyx [ 8/12] Cythonizing MDAnalysis/lib/formats/cython_util.pyx [ 9/12] Cythonizing MDAnalysis/lib/formats/libdcd.pyx [10/12] Cythonizing MDAnalysis/lib/formats/libmdaxdr.pyx [11/12] Cythonizing MDAnalysis/lib/nsgrid.pyx [12/12] Cythonizing MDAnalysis/lib/qcprot.pyx running clean removing '/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it I: pybuild base:237: python3.9 setup.py clean Attempting to autodetect OpenMP support... Compiler supports OpenMP Will attempt to use Cython. running clean removing '/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1' rm -f .duecredit.p rm -f package/MDAnalysis/authors.py rm -f package/MDAnalysis/analysis/encore/clustering/affinityprop.c \ package/MDAnalysis/analysis/encore/cutils.c \ package/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c \ package/MDAnalysis/lib/_augment.cpp \ package/MDAnalysis/lib/_cutil.cpp \ package/MDAnalysis/lib/c_distances.c \ package/MDAnalysis/lib/c_distances_openmp.c \ package/MDAnalysis/lib/formats/cython_util.c \ package/MDAnalysis/lib/formats/libdcd.c \ package/MDAnalysis/lib/formats/libmdaxdr.c \ package/MDAnalysis/lib/nsgrid.cpp \ package/MDAnalysis/lib/qcprot.c rm -rf package/MDAnalysis.egg-info rm -f testsuite/MDAnalysisTests/data/.*_offsets.npz testsuite/MDAnalysisTests/data/*/.*_offsets.npz rm -rf testsuite/.pytest_cache make[1]: Leaving directory '/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build-arch dh build-arch --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py config Attempting to autodetect OpenMP support... Compiler supports OpenMP Will attempt to use Cython. Compiling MDAnalysis/lib/formats/libdcd.pyx because it changed. Compiling MDAnalysis/lib/c_distances.pyx because it changed. Compiling MDAnalysis/lib/c_distances_openmp.pyx because it changed. Compiling MDAnalysis/lib/qcprot.pyx because it changed. Compiling MDAnalysis/lib/formats/libmdaxdr.pyx because it changed. Compiling MDAnalysis/lib/formats/cython_util.pyx because it changed. Compiling MDAnalysis/analysis/encore/cutils.pyx because it changed. Compiling MDAnalysis/analysis/encore/clustering/affinityprop.pyx because it changed. Compiling MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx because it changed. Compiling MDAnalysis/lib/_cutil.pyx because it changed. Compiling MDAnalysis/lib/_augment.pyx because it changed. Compiling MDAnalysis/lib/nsgrid.pyx because it changed. [ 1/12] Cythonizing MDAnalysis/analysis/encore/clustering/affinityprop.pyx [ 2/12] Cythonizing MDAnalysis/analysis/encore/cutils.pyx [ 3/12] Cythonizing MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx [ 4/12] Cythonizing MDAnalysis/lib/_augment.pyx [ 5/12] Cythonizing MDAnalysis/lib/_cutil.pyx [ 6/12] Cythonizing MDAnalysis/lib/c_distances.pyx [ 7/12] Cythonizing MDAnalysis/lib/c_distances_openmp.pyx [ 8/12] Cythonizing MDAnalysis/lib/formats/cython_util.pyx [ 9/12] Cythonizing MDAnalysis/lib/formats/libdcd.pyx [10/12] Cythonizing MDAnalysis/lib/formats/libmdaxdr.pyx [11/12] Cythonizing MDAnalysis/lib/nsgrid.pyx [12/12] Cythonizing MDAnalysis/lib/qcprot.pyx running config I: pybuild base:237: python3.9 setup.py config Attempting to autodetect OpenMP support... Compiler supports OpenMP Will attempt to use Cython. running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3.10 setup.py build Attempting to autodetect OpenMP support... Compiler supports OpenMP Will attempt to use Cython. running build running build_py creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis copying MDAnalysis/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis copying MDAnalysis/due.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis copying MDAnalysis/exceptions.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis copying MDAnalysis/units.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis copying MDAnalysis/version.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis copying MDAnalysis/authors.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/align.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/bat.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/contacts.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/density.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/diffusionmap.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/dihedrals.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/distances.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/gnm.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/helix_analysis.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/leaflet.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/lineardensity.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/msd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/nuclinfo.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/pca.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/polymer.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/psa.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/rdf.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/rms.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/waterdynamics.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/XVG.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/core.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/auxiliary creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/OpenMM.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/OpenMMParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/ParmEd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/ParmEdParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/RDKit.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/RDKitParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/CRD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/DCD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/DLPoly.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/DMS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/FHIAIMS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/GMS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/GRO.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/GSD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/H5MD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/INPCRD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/LAMMPS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/MMTF.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/MOL2.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/NAMDBIN.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/PDB.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/PDBQT.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/PQR.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/ParmEd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/TRJ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/TRR.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/TRZ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/TXYZ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/XDR.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/XTC.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/XYZ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/chain.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/chemfiles.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/core.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/memory.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/null.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/_get_readers.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/accessors.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/groups.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/selection.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/topology.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/topologyattrs.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/topologyobjects.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/universe.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/NeighborSearch.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/correlations.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/distances.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/log.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/mdamath.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/picklable_file_io.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/pkdtree.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/transformations.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/util.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/charmm.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/gromacs.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/jmol.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/pymol.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/vmd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/tests copying MDAnalysis/tests/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/tests copying MDAnalysis/tests/datafiles.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/tests creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/CRDParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/DLPolyParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/DMSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/ExtendedPDBParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/FHIAIMSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/GMSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/GROParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/GSDParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/HoomdXMLParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/ITPParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/LAMMPSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/MMTFParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/MOL2Parser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/MinimalParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/PDBParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/PDBQTParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/PQRParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/PSFParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/ParmEdParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/TOPParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/TPRParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/TXYZParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/XYZParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/core.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/guessers.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/tables.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/boxdimensions.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/fit.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/positionaveraging.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/rotate.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/translate.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/wrap.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/visualization copying MDAnalysis/visualization/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/visualization copying MDAnalysis/visualization/streamlines.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/visualization copying MDAnalysis/visualization/streamlines_3D.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/visualization creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/filenames.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/data creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/bootstrap.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/confdistmatrix.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/covariance.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/similarity.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/utils.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hbonds copying MDAnalysis/analysis/hbonds/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hbonds copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hbonds creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/hole.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/templates.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/utils.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hole2 creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/legacy copying MDAnalysis/analysis/legacy/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/legacy copying MDAnalysis/analysis/legacy/x3dna.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/legacy creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/cluster.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/clustering creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/formats creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/obj.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/setting.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/utils.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/tpr copying MDAnalysis/analysis/data/janin_ref_data.npy -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/rama_ref_data.npy -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/data running build_ext building 'MDAnalysis.lib.formats.libdcd' extension creating build creating build/temp.linux-x86_64-3.10 creating build/temp.linux-x86_64-3.10/MDAnalysis creating build/temp.linux-x86_64-3.10/MDAnalysis/lib creating build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/usr/include/python3.10 -c MDAnalysis/lib/formats/libdcd.c -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/libdcd.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/formats/libdcd.c:653: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from MDAnalysis/lib/formats/libdcd.c:665: MDAnalysis/lib/formats/include/readdcd.h: In function ‘read_dcdstep’: MDAnalysis/lib/formats/include/readdcd.h:549:17: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 549 | if (readlen != (6*sizeof(int) + 3*N*sizeof(float))) | ^~ MDAnalysis/lib/formats/include/readdcd.h:562:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 562 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; | ^~ MDAnalysis/lib/formats/include/readdcd.h: In function ‘write_dcdheader’: MDAnalysis/lib/formats/include/readdcd.h:698:14: warning: unused variable ‘tmbuf’ [-Wunused-variable] 698 | struct tm *tmbuf; | ^~~~~ MDAnalysis/lib/formats/include/readdcd.h:697:10: warning: unused variable ‘cur_time’ [-Wunused-variable] 697 | time_t cur_time; | ^~~~~~~~ In file included from MDAnalysis/lib/formats/include/readdcd.h:25, from MDAnalysis/lib/formats/libdcd.c:665: At top level: MDAnalysis/lib/formats/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ MDAnalysis/lib/formats/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from MDAnalysis/lib/formats/libdcd.c:664: MDAnalysis/lib/formats/include/fastio.h:453:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function] 453 | static int fio_write_str(fio_fd fd, const char *str) { | ^~~~~~~~~~~~~ MDAnalysis/lib/formats/include/fastio.h:449:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function] 449 | static int fio_read_int32(fio_fd fd, int *i) { | ^~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/libdcd.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/formats/libdcd.cpython-310-x86_64-linux-gnu.so building 'MDAnalysis.lib.c_distances' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include -I/usr/include/python3.10 -c MDAnalysis/lib/c_distances.c -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/c_distances.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/c_distances.c:654: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/lib/c_distances.o -lm -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/c_distances.cpython-310-x86_64-linux-gnu.so building 'MDAnalysis.lib.c_distances_openmp' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPARALLEL -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include -I/usr/include/python3.10 -c MDAnalysis/lib/c_distances_openmp.c -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/c_distances_openmp.o -fopenmp -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/c_distances_openmp.c:665: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/lib/c_distances_openmp.o -lm -lgomp -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/c_distances_openmp.cpython-310-x86_64-linux-gnu.so -fopenmp building 'MDAnalysis.lib.qcprot' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MDAnalysis/lib/qcprot.c -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/qcprot.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/qcprot.c:649: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ MDAnalysis/lib/qcprot.c: In function ‘__pyx_pf_10MDAnalysis_3lib_6qcprot_InnerProduct’: MDAnalysis/lib/qcprot.c:2249:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2249 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { | ^ MDAnalysis/lib/qcprot.c:2457:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2457 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { | ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/lib/qcprot.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/qcprot.cpython-310-x86_64-linux-gnu.so building 'MDAnalysis.lib._transformations' extension creating build/temp.linux-x86_64-3.10/MDAnalysis/lib/src creating build/temp.linux-x86_64-3.10/MDAnalysis/lib/src/transformations x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MDAnalysis/lib/src/transformations/transformations.c -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/src/transformations/transformations.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/src/transformations/transformations.c:73: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_superimposition_matrix’: MDAnalysis/lib/src/transformations/transformations.c:1845: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 1845 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c:1962: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 1962 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c:1986: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 1986 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c: In function ‘axis2tuple’: MDAnalysis/lib/src/transformations/transformations.c:2122:5: warning: ‘PyUnicode_GetSize’ is deprecated [-Wdeprecated-declarations] 2122 | if (PyUnicode_Check(axes) && (PyUnicode_GetSize(axes) == 4)) { | ^~ In file included from /usr/include/python3.10/Python.h:83, from MDAnalysis/lib/src/transformations/transformations.c:68: /usr/include/python3.10/unicodeobject.h:177:43: note: declared here 177 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_ssize_t) PyUnicode_GetSize( | ^~~~~~~~~~~~~~~~~ MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_vector_norm’: MDAnalysis/lib/src/transformations/transformations.c:3427: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 3427 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c:3508: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 3508 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_unit_vector’: MDAnalysis/lib/src/transformations/transformations.c:3610: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 3610 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c:3615: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 3615 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c:3679: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 3679 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c:3684: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 3684 | #pragma vector always | At top level: MDAnalysis/lib/src/transformations/transformations.c:910:1: warning: ‘PyConverter_DoubleVector4Copy’ defined but not used [-Wunused-function] 910 | PyConverter_DoubleVector4Copy( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MDAnalysis/lib/src/transformations/transformations.c:804:1: warning: ‘PyConverter_DoubleArrayOrNone’ defined but not used [-Wunused-function] 804 | PyConverter_DoubleArrayOrNone( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MDAnalysis/lib/src/transformations/transformations.c:774:1: warning: ‘PyConverter_DoubleArray’ defined but not used [-Wunused-function] 774 | PyConverter_DoubleArray( | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/lib/src/transformations/transformations.o -lm -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/_transformations.cpython-310-x86_64-linux-gnu.so building 'MDAnalysis.lib.formats.libmdaxdr' extension creating build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/include/python3.10 -c MDAnalysis/lib/formats/libmdaxdr.c -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/libmdaxdr.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/formats/libmdaxdr.c:676: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from MDAnalysis/lib/formats/libmdaxdr.c:685: MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/libmdaxdr.c:686: MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/include/xdrfile_xtc.h:43, from MDAnalysis/lib/formats/libmdaxdr.c:686: MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/libmdaxdr.c:687: MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/include/python3.10 -c MDAnalysis/lib/formats/src/trr_seek.c -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/src/trr_seek.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from MDAnalysis/lib/formats/src/trr_seek.c:30: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/src/trr_seek.c:31: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_trr.h:42, from MDAnalysis/lib/formats/src/trr_seek.c:31: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | MDAnalysis/lib/formats/src/trr_seek.c: In function ‘read_trr_n_frames’: MDAnalysis/lib/formats/src/trr_seek.c:39:27: warning: unused variable ‘totalframebytes’ [-Wunused-variable] 39 | int result, framebytes, totalframebytes; | ^~~~~~~~~~~~~~~ MDAnalysis/lib/formats/src/trr_seek.c:38:15: warning: unused variable ‘lambda’ [-Wunused-variable] 38 | float time, lambda; | ^~~~~~ MDAnalysis/lib/formats/src/trr_seek.c:38:9: warning: unused variable ‘time’ [-Wunused-variable] 38 | float time, lambda; | ^~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/include/python3.10 -c MDAnalysis/lib/formats/src/xdrfile.c -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/src/xdrfile.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from MDAnalysis/lib/formats/src/xdrfile.c:62: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofint’: MDAnalysis/lib/formats/src/xdrfile.c:501:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 501 | while (size >= num && num_of_bits < 32) | ^~ MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofints’: MDAnalysis/lib/formats/src/xdrfile.c:547:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 547 | while (bytes[num_of_bytes] >= num) | ^~ MDAnalysis/lib/formats/src/xdrfile.c: In function ‘encodeints’: MDAnalysis/lib/formats/src/xdrfile.c:656:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 656 | if (num_of_bits >= num_of_bytes * 8) | ^~ MDAnalysis/lib/formats/src/xdrfile.c:658:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 658 | for (i = 0; i < num_of_bytes; i++) | ^ MDAnalysis/lib/formats/src/xdrfile.c:666:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 666 | for (i = 0; i < num_of_bytes-1; i++) | ^ MDAnalysis/lib/formats/src/xdrfile.c: In function ‘decodebits’: MDAnalysis/lib/formats/src/xdrfile.c:706:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 706 | if (lastbits < num_of_bits) | ^ MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: MDAnalysis/lib/formats/src/xdrfile.c:816:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 816 | if(size3>xfp->buf1size) | ^ MDAnalysis/lib/formats/src/xdrfile.c:868:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 868 | maxidx = (LASTIDXxfp->buf1size) | ^ MDAnalysis/lib/formats/src/xdrfile.c:1135:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1135 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) | ^ MDAnalysis/lib/formats/src/xdrfile.c:1141:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 1141 | maxidx = (LASTIDXxfp->buf1size) | ^ MDAnalysis/lib/formats/src/xdrfile.c:1368:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 1368 | maxidx = (LASTIDXxfp->buf1size) { | ^ MDAnalysis/lib/formats/src/xdrfile.c:1619:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1619 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { | ^ MDAnalysis/lib/formats/src/xdrfile.c:1624:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 1624 | maxidx = (LASTIDX maxsize) | ^ MDAnalysis/lib/formats/src/xdrfile.c:2335:22: note: ‘size’ was declared here 2335 | unsigned int size; | ^~~~ MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’: MDAnalysis/lib/formats/src/xdrfile.c:1157:42: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1157 | abs(thiscoord[2] - prevcoord[2]) < larger) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ MDAnalysis/lib/formats/src/xdrfile.c:1156:42: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1156 | abs(thiscoord[1] - prevcoord[1]) < larger && | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ MDAnalysis/lib/formats/src/xdrfile.c:1155:42: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1155 | abs(thiscoord[0] - prevcoord[0]) < larger && | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’: MDAnalysis/lib/formats/src/xdrfile.c:1639:42: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1639 | abs(thiscoord[2] - prevcoord[2]) < larger) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ MDAnalysis/lib/formats/src/xdrfile.c:1638:42: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1638 | abs(thiscoord[1] - prevcoord[1]) < larger && | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ MDAnalysis/lib/formats/src/xdrfile.c:1637:42: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1637 | abs(thiscoord[0] - prevcoord[0]) < larger && | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/include/python3.10 -c MDAnalysis/lib/formats/src/xdrfile_trr.c -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/src/xdrfile_trr.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:38: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:39: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_trr.h:42, from MDAnalysis/lib/formats/src/xdrfile_trr.c:39: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘do_trnheader’: MDAnalysis/lib/formats/src/xdrfile_trr.c:78:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 78 | if (slen != strlen(version) + 1) | ^~ MDAnalysis/lib/formats/src/xdrfile_trr.c:86:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 86 | if (xdrfile_write_string(version, xd) != (strlen(version) + 1)) | ^~ MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘write_trr’: MDAnalysis/lib/formats/src/xdrfile_trr.c:408:10: warning: ‘plcholder’ is used uninitialized [-Wuninitialized] 408 | return do_trn(xd, 0, &step, &t, &lambda, box, &natoms, x, v, f, plcholder); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/include/python3.10 -c MDAnalysis/lib/formats/src/xdrfile_xtc.c -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/src/xdrfile_xtc.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:30: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43, from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/include/python3.10 -c MDAnalysis/lib/formats/src/xtc_seek.c -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/src/xtc_seek.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from MDAnalysis/lib/formats/src/xtc_seek.c:25: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/src/xtc_seek.c:26: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43, from MDAnalysis/lib/formats/src/xtc_seek.c:26: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/libmdaxdr.o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/src/trr_seek.o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/src/xdrfile.o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/src/xdrfile_trr.o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/src/xdrfile_xtc.o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/src/xtc_seek.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/formats/libmdaxdr.cpython-310-x86_64-linux-gnu.so building 'MDAnalysis.lib.formats.cython_util' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MDAnalysis/lib/formats/cython_util.c -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/cython_util.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/formats/cython_util.c:649: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/lib/formats/cython_util.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/formats/cython_util.cpython-310-x86_64-linux-gnu.so building 'MDAnalysis.analysis.encore.cutils' extension creating build/temp.linux-x86_64-3.10/MDAnalysis/analysis creating build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/cutils.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/analysis/encore/cutils.c:649: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/cutils.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/cutils.cpython-310-x86_64-linux-gnu.so building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension creating build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/clustering creating build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/clustering/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.10 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/analysis/encore/clustering/affinityprop.c:655: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.10 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/clustering/src/ap.o -lm -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-310-x86_64-linux-gnu.so building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension creating build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/dimensionality_reduction creating build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/dimensionality_reduction/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.10 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.10 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c:655: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o build/temp.linux-x86_64-3.10/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -lm -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-310-x86_64-linux-gnu.so building 'MDAnalysis.lib._cutil' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include -I/usr/include/python3.10 -c MDAnalysis/lib/_cutil.cpp -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/_cutil.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11 cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/_cutil.cpp:669: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from MDAnalysis/lib/_cutil.cpp:697: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:854:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 854 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:818:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 818 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:790:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], int, double*)’ defined but not used [-Wunused-function] 790 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:713:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 713 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:670:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 670 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:639:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], int, double*)’ defined but not used [-Wunused-function] 639 | static void _calc_angle(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:614:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 614 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:589:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 589 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:570:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], int, double*)’ defined but not used [-Wunused-function] 570 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:515:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 515 | static void _calc_self_distance_array_triclinic(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:482:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 482 | static void _calc_self_distance_array_ortho(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:455:13: warning: ‘void _calc_self_distance_array(float (*)[3], int, double*)’ defined but not used [-Wunused-function] 455 | static void _calc_self_distance_array(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:428:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], int, float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 428 | static void _calc_distance_array_triclinic(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:401:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], int, float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 401 | static void _calc_distance_array_ortho(coordinate* ref, int numref, coordinate* conf, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:380:13: warning: ‘void _calc_distance_array(float (*)[3], int, float (*)[3], int, double*)’ defined but not used [-Wunused-function] 380 | static void _calc_distance_array(coordinate* ref, int numref, coordinate* conf, | ^~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:111:13: warning: ‘void _ortho_pbc(float (*)[3], int, float*)’ defined but not used [-Wunused-function] 111 | static void _ortho_pbc(coordinate* coords, int numcoords, float* box) | ^~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/lib/_cutil.o -lm -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/_cutil.cpython-310-x86_64-linux-gnu.so building 'MDAnalysis.lib._augment' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MDAnalysis/lib/_augment.cpp -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/_augment.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11 cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/_augment.cpp:664: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/lib/_augment.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/_augment.cpython-310-x86_64-linux-gnu.so building 'MDAnalysis.lib.nsgrid' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include -I/usr/include/python3.10 -c MDAnalysis/lib/nsgrid.cpp -o build/temp.linux-x86_64-3.10/MDAnalysis/lib/nsgrid.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11 cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from MDAnalysis/lib/nsgrid.cpp:665: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:854:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 854 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:818:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 818 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:790:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], int, double*)’ defined but not used [-Wunused-function] 790 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:713:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 713 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:670:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 670 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:639:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], int, double*)’ defined but not used [-Wunused-function] 639 | static void _calc_angle(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:614:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 614 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:589:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 589 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:570:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], int, double*)’ defined but not used [-Wunused-function] 570 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:515:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 515 | static void _calc_self_distance_array_triclinic(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:482:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 482 | static void _calc_self_distance_array_ortho(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:455:13: warning: ‘void _calc_self_distance_array(float (*)[3], int, double*)’ defined but not used [-Wunused-function] 455 | static void _calc_self_distance_array(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:428:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], int, float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 428 | static void _calc_distance_array_triclinic(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:401:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], int, float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 401 | static void _calc_distance_array_ortho(coordinate* ref, int numref, coordinate* conf, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:380:13: warning: ‘void _calc_distance_array(float (*)[3], int, float (*)[3], int, double*)’ defined but not used [-Wunused-function] 380 | static void _calc_distance_array(coordinate* ref, int numref, coordinate* conf, | ^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/MDAnalysis/lib/nsgrid.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/nsgrid.cpython-310-x86_64-linux-gnu.so I: pybuild base:237: /usr/bin/python3 setup.py build Attempting to autodetect OpenMP support... Compiler supports OpenMP Will attempt to use Cython. running build running build_py creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis copying MDAnalysis/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis copying MDAnalysis/due.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis copying MDAnalysis/exceptions.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis copying MDAnalysis/units.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis copying MDAnalysis/version.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis copying MDAnalysis/authors.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/align.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/bat.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/contacts.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/density.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/diffusionmap.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/dihedrals.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/distances.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/gnm.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/helix_analysis.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/leaflet.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/lineardensity.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/msd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/nuclinfo.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/pca.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/polymer.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/psa.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/rdf.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/rms.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis copying MDAnalysis/analysis/waterdynamics.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/XVG.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/auxiliary copying MDAnalysis/auxiliary/core.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/auxiliary creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/OpenMM.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/OpenMMParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/ParmEd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/ParmEdParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/RDKit.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/RDKitParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters copying MDAnalysis/converters/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/CRD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/DCD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/DLPoly.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/DMS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/FHIAIMS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/GMS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/GRO.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/GSD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/H5MD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/INPCRD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/LAMMPS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/MMTF.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/MOL2.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/NAMDBIN.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/PDB.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/PDBQT.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/PQR.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/ParmEd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/TRJ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/TRR.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/TRZ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/TXYZ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/XDR.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/XTC.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/XYZ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/chain.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/chemfiles.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/core.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/memory.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates copying MDAnalysis/coordinates/null.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/_get_readers.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/accessors.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/groups.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/selection.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/topology.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/topologyattrs.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/topologyobjects.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core copying MDAnalysis/core/universe.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/NeighborSearch.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/correlations.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/distances.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/log.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/mdamath.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/picklable_file_io.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/pkdtree.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/transformations.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib copying MDAnalysis/lib/util.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/charmm.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/gromacs.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/jmol.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/pymol.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections copying MDAnalysis/selections/vmd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/tests copying MDAnalysis/tests/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/tests copying MDAnalysis/tests/datafiles.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/tests creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/CRDParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/DLPolyParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/DMSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/ExtendedPDBParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/FHIAIMSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/GMSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/GROParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/GSDParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/HoomdXMLParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/ITPParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/LAMMPSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/MMTFParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/MOL2Parser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/MinimalParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/PDBParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/PDBQTParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/PQRParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/PSFParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/ParmEdParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/TOPParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/TPRParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/TXYZParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/XYZParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/core.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/guessers.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology copying MDAnalysis/topology/tables.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/boxdimensions.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/fit.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/positionaveraging.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/rotate.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/translate.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations copying MDAnalysis/transformations/wrap.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/visualization copying MDAnalysis/visualization/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/visualization copying MDAnalysis/visualization/streamlines.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/visualization copying MDAnalysis/visualization/streamlines_3D.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/visualization creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/filenames.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/data creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/bootstrap.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/confdistmatrix.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/covariance.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/similarity.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/utils.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hbonds copying MDAnalysis/analysis/hbonds/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hbonds copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hbonds creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/hole.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/templates.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/utils.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hole2 creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/legacy copying MDAnalysis/analysis/legacy/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/legacy copying MDAnalysis/analysis/legacy/x3dna.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/legacy creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/cluster.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/clustering creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/formats creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/obj.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/setting.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/utils.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/tpr copying MDAnalysis/analysis/data/janin_ref_data.npy -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/rama_ref_data.npy -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/data running build_ext building 'MDAnalysis.lib.formats.libdcd' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/MDAnalysis creating build/temp.linux-x86_64-3.9/MDAnalysis/lib creating build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/usr/include/python3.9 -c MDAnalysis/lib/formats/libdcd.c -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/libdcd.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/formats/libdcd.c:653: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from MDAnalysis/lib/formats/libdcd.c:665: MDAnalysis/lib/formats/include/readdcd.h: In function ‘read_dcdstep’: MDAnalysis/lib/formats/include/readdcd.h:549:17: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 549 | if (readlen != (6*sizeof(int) + 3*N*sizeof(float))) | ^~ MDAnalysis/lib/formats/include/readdcd.h:562:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 562 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; | ^~ MDAnalysis/lib/formats/include/readdcd.h: In function ‘write_dcdheader’: MDAnalysis/lib/formats/include/readdcd.h:698:14: warning: unused variable ‘tmbuf’ [-Wunused-variable] 698 | struct tm *tmbuf; | ^~~~~ MDAnalysis/lib/formats/include/readdcd.h:697:10: warning: unused variable ‘cur_time’ [-Wunused-variable] 697 | time_t cur_time; | ^~~~~~~~ In file included from MDAnalysis/lib/formats/include/readdcd.h:25, from MDAnalysis/lib/formats/libdcd.c:665: At top level: MDAnalysis/lib/formats/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] 96 | static void swap2_aligned(void *v, long ndata) { | ^~~~~~~~~~~~~ MDAnalysis/lib/formats/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 32 | static void swap2_unaligned(void *v, long ndata) { | ^~~~~~~~~~~~~~~ In file included from MDAnalysis/lib/formats/libdcd.c:664: MDAnalysis/lib/formats/include/fastio.h:453:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function] 453 | static int fio_write_str(fio_fd fd, const char *str) { | ^~~~~~~~~~~~~ MDAnalysis/lib/formats/include/fastio.h:449:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function] 449 | static int fio_read_int32(fio_fd fd, int *i) { | ^~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/libdcd.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/formats/libdcd.cpython-39-x86_64-linux-gnu.so building 'MDAnalysis.lib.c_distances' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/c_distances.c -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/c_distances.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/c_distances.c:654: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/lib/c_distances.o -lm -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/c_distances.cpython-39-x86_64-linux-gnu.so building 'MDAnalysis.lib.c_distances_openmp' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPARALLEL -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/c_distances_openmp.c -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/c_distances_openmp.o -fopenmp -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/c_distances_openmp.c:665: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/lib/c_distances_openmp.o -lm -lgomp -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/c_distances_openmp.cpython-39-x86_64-linux-gnu.so -fopenmp building 'MDAnalysis.lib.qcprot' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/qcprot.c -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/qcprot.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/qcprot.c:649: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ MDAnalysis/lib/qcprot.c: In function ‘__pyx_pf_10MDAnalysis_3lib_6qcprot_InnerProduct’: MDAnalysis/lib/qcprot.c:2249:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2249 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { | ^ MDAnalysis/lib/qcprot.c:2457:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2457 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { | ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/lib/qcprot.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/qcprot.cpython-39-x86_64-linux-gnu.so building 'MDAnalysis.lib._transformations' extension creating build/temp.linux-x86_64-3.9/MDAnalysis/lib/src creating build/temp.linux-x86_64-3.9/MDAnalysis/lib/src/transformations x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/src/transformations/transformations.c -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/src/transformations/transformations.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/src/transformations/transformations.c:73: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_superimposition_matrix’: MDAnalysis/lib/src/transformations/transformations.c:1845: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 1845 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c:1962: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 1962 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c:1986: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 1986 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c: In function ‘axis2tuple’: MDAnalysis/lib/src/transformations/transformations.c:2122:5: warning: ‘PyUnicode_GetSize’ is deprecated [-Wdeprecated-declarations] 2122 | if (PyUnicode_Check(axes) && (PyUnicode_GetSize(axes) == 4)) { | ^~ In file included from /usr/include/python3.9/Python.h:93, from MDAnalysis/lib/src/transformations/transformations.c:68: /usr/include/python3.9/unicodeobject.h:177:43: note: declared here 177 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_ssize_t) PyUnicode_GetSize( | ^~~~~~~~~~~~~~~~~ MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_vector_norm’: MDAnalysis/lib/src/transformations/transformations.c:3427: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 3427 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c:3508: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 3508 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_unit_vector’: MDAnalysis/lib/src/transformations/transformations.c:3610: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 3610 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c:3615: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 3615 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c:3679: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 3679 | #pragma vector always | MDAnalysis/lib/src/transformations/transformations.c:3684: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 3684 | #pragma vector always | At top level: MDAnalysis/lib/src/transformations/transformations.c:910:1: warning: ‘PyConverter_DoubleVector4Copy’ defined but not used [-Wunused-function] 910 | PyConverter_DoubleVector4Copy( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MDAnalysis/lib/src/transformations/transformations.c:804:1: warning: ‘PyConverter_DoubleArrayOrNone’ defined but not used [-Wunused-function] 804 | PyConverter_DoubleArrayOrNone( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MDAnalysis/lib/src/transformations/transformations.c:774:1: warning: ‘PyConverter_DoubleArray’ defined but not used [-Wunused-function] 774 | PyConverter_DoubleArray( | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/lib/src/transformations/transformations.o -lm -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/_transformations.cpython-39-x86_64-linux-gnu.so building 'MDAnalysis.lib.formats.libmdaxdr' extension creating build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/libmdaxdr.c -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/libmdaxdr.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/formats/libmdaxdr.c:676: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from MDAnalysis/lib/formats/libmdaxdr.c:685: MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/libmdaxdr.c:686: MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/include/xdrfile_xtc.h:43, from MDAnalysis/lib/formats/libmdaxdr.c:686: MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/libmdaxdr.c:687: MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/trr_seek.c -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/src/trr_seek.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from MDAnalysis/lib/formats/src/trr_seek.c:30: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/src/trr_seek.c:31: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_trr.h:42, from MDAnalysis/lib/formats/src/trr_seek.c:31: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | MDAnalysis/lib/formats/src/trr_seek.c: In function ‘read_trr_n_frames’: MDAnalysis/lib/formats/src/trr_seek.c:39:27: warning: unused variable ‘totalframebytes’ [-Wunused-variable] 39 | int result, framebytes, totalframebytes; | ^~~~~~~~~~~~~~~ MDAnalysis/lib/formats/src/trr_seek.c:38:15: warning: unused variable ‘lambda’ [-Wunused-variable] 38 | float time, lambda; | ^~~~~~ MDAnalysis/lib/formats/src/trr_seek.c:38:9: warning: unused variable ‘time’ [-Wunused-variable] 38 | float time, lambda; | ^~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile.c -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/src/xdrfile.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from MDAnalysis/lib/formats/src/xdrfile.c:62: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofint’: MDAnalysis/lib/formats/src/xdrfile.c:501:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 501 | while (size >= num && num_of_bits < 32) | ^~ MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofints’: MDAnalysis/lib/formats/src/xdrfile.c:547:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 547 | while (bytes[num_of_bytes] >= num) | ^~ MDAnalysis/lib/formats/src/xdrfile.c: In function ‘encodeints’: MDAnalysis/lib/formats/src/xdrfile.c:656:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 656 | if (num_of_bits >= num_of_bytes * 8) | ^~ MDAnalysis/lib/formats/src/xdrfile.c:658:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 658 | for (i = 0; i < num_of_bytes; i++) | ^ MDAnalysis/lib/formats/src/xdrfile.c:666:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 666 | for (i = 0; i < num_of_bytes-1; i++) | ^ MDAnalysis/lib/formats/src/xdrfile.c: In function ‘decodebits’: MDAnalysis/lib/formats/src/xdrfile.c:706:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 706 | if (lastbits < num_of_bits) | ^ MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: MDAnalysis/lib/formats/src/xdrfile.c:816:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 816 | if(size3>xfp->buf1size) | ^ MDAnalysis/lib/formats/src/xdrfile.c:868:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 868 | maxidx = (LASTIDXxfp->buf1size) | ^ MDAnalysis/lib/formats/src/xdrfile.c:1135:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1135 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) | ^ MDAnalysis/lib/formats/src/xdrfile.c:1141:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 1141 | maxidx = (LASTIDXxfp->buf1size) | ^ MDAnalysis/lib/formats/src/xdrfile.c:1368:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 1368 | maxidx = (LASTIDXxfp->buf1size) { | ^ MDAnalysis/lib/formats/src/xdrfile.c:1619:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1619 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { | ^ MDAnalysis/lib/formats/src/xdrfile.c:1624:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 1624 | maxidx = (LASTIDX maxsize) | ^ MDAnalysis/lib/formats/src/xdrfile.c:2335:22: note: ‘size’ was declared here 2335 | unsigned int size; | ^~~~ MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’: MDAnalysis/lib/formats/src/xdrfile.c:1157:42: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1157 | abs(thiscoord[2] - prevcoord[2]) < larger) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ MDAnalysis/lib/formats/src/xdrfile.c:1156:42: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1156 | abs(thiscoord[1] - prevcoord[1]) < larger && | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ MDAnalysis/lib/formats/src/xdrfile.c:1155:42: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1155 | abs(thiscoord[0] - prevcoord[0]) < larger && | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’: MDAnalysis/lib/formats/src/xdrfile.c:1639:42: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1639 | abs(thiscoord[2] - prevcoord[2]) < larger) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ MDAnalysis/lib/formats/src/xdrfile.c:1638:42: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1638 | abs(thiscoord[1] - prevcoord[1]) < larger && | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ MDAnalysis/lib/formats/src/xdrfile.c:1637:42: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1637 | abs(thiscoord[0] - prevcoord[0]) < larger && | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile_trr.c -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/src/xdrfile_trr.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:38: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:39: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_trr.h:42, from MDAnalysis/lib/formats/src/xdrfile_trr.c:39: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘do_trnheader’: MDAnalysis/lib/formats/src/xdrfile_trr.c:78:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 78 | if (slen != strlen(version) + 1) | ^~ MDAnalysis/lib/formats/src/xdrfile_trr.c:86:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 86 | if (xdrfile_write_string(version, xd) != (strlen(version) + 1)) | ^~ MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘write_trr’: MDAnalysis/lib/formats/src/xdrfile_trr.c:408:10: warning: ‘plcholder’ is used uninitialized [-Wuninitialized] 408 | return do_trn(xd, 0, &step, &t, &lambda, box, &natoms, x, v, f, plcholder); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile_xtc.c -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/src/xdrfile_xtc.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:30: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43, from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xtc_seek.c -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/src/xtc_seek.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from MDAnalysis/lib/formats/src/xtc_seek.c:25: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from MDAnalysis/lib/formats/src/xtc_seek.c:26: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | In file included from /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43, from MDAnalysis/lib/formats/src/xtc_seek.c:26: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- | x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/libmdaxdr.o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/src/trr_seek.o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/src/xdrfile.o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/src/xdrfile_trr.o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/src/xdrfile_xtc.o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/src/xtc_seek.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/formats/libmdaxdr.cpython-39-x86_64-linux-gnu.so building 'MDAnalysis.lib.formats.cython_util' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/formats/cython_util.c -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/cython_util.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/formats/cython_util.c:649: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/lib/formats/cython_util.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/formats/cython_util.cpython-39-x86_64-linux-gnu.so building 'MDAnalysis.analysis.encore.cutils' extension creating build/temp.linux-x86_64-3.9/MDAnalysis/analysis creating build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/cutils.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/analysis/encore/cutils.c:649: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/cutils.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/cutils.cpython-39-x86_64-linux-gnu.so building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension creating build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/clustering creating build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/clustering/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/analysis/encore/clustering/affinityprop.c:655: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/clustering/src/ap.o -lm -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-x86_64-linux-gnu.so building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension creating build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/dimensionality_reduction creating build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/dimensionality_reduction/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3 cc1: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c:655: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o build/temp.linux-x86_64-3.9/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -lm -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-x86_64-linux-gnu.so building 'MDAnalysis.lib._cutil' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/_cutil.cpp -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/_cutil.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11 cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/_cutil.cpp:669: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from MDAnalysis/lib/_cutil.cpp:697: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:854:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 854 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:818:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 818 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:790:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], int, double*)’ defined but not used [-Wunused-function] 790 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:713:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 713 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:670:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 670 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:639:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], int, double*)’ defined but not used [-Wunused-function] 639 | static void _calc_angle(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:614:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 614 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:589:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 589 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:570:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], int, double*)’ defined but not used [-Wunused-function] 570 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:515:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 515 | static void _calc_self_distance_array_triclinic(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:482:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 482 | static void _calc_self_distance_array_ortho(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:455:13: warning: ‘void _calc_self_distance_array(float (*)[3], int, double*)’ defined but not used [-Wunused-function] 455 | static void _calc_self_distance_array(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:428:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], int, float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 428 | static void _calc_distance_array_triclinic(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:401:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], int, float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 401 | static void _calc_distance_array_ortho(coordinate* ref, int numref, coordinate* conf, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:380:13: warning: ‘void _calc_distance_array(float (*)[3], int, float (*)[3], int, double*)’ defined but not used [-Wunused-function] 380 | static void _calc_distance_array(coordinate* ref, int numref, coordinate* conf, | ^~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:111:13: warning: ‘void _ortho_pbc(float (*)[3], int, float*)’ defined but not used [-Wunused-function] 111 | static void _ortho_pbc(coordinate* coords, int numcoords, float* box) | ^~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/lib/_cutil.o -lm -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/_cutil.cpython-39-x86_64-linux-gnu.so building 'MDAnalysis.lib._augment' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/_augment.cpp -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/_augment.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11 cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from MDAnalysis/lib/_augment.cpp:664: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/lib/_augment.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/_augment.cpython-39-x86_64-linux-gnu.so building 'MDAnalysis.lib.nsgrid' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/nsgrid.cpp -o build/temp.linux-x86_64-3.9/MDAnalysis/lib/nsgrid.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11 cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence In file included from MDAnalysis/lib/nsgrid.cpp:665: /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:854:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 854 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:818:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 818 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:790:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], int, double*)’ defined but not used [-Wunused-function] 790 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:713:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 713 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:670:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 670 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:639:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], int, double*)’ defined but not used [-Wunused-function] 639 | static void _calc_angle(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:614:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 614 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:589:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 589 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:570:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], int, double*)’ defined but not used [-Wunused-function] 570 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2, | ^~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:515:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 515 | static void _calc_self_distance_array_triclinic(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:482:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 482 | static void _calc_self_distance_array_ortho(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:455:13: warning: ‘void _calc_self_distance_array(float (*)[3], int, double*)’ defined but not used [-Wunused-function] 455 | static void _calc_self_distance_array(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:428:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], int, float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 428 | static void _calc_distance_array_triclinic(coordinate* ref, int numref, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:401:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], int, float (*)[3], int, float*, double*)’ defined but not used [-Wunused-function] 401 | static void _calc_distance_array_ortho(coordinate* ref, int numref, coordinate* conf, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/package/MDAnalysis/lib/include/calc_distances.h:380:13: warning: ‘void _calc_distance_array(float (*)[3], int, float (*)[3], int, double*)’ defined but not used [-Wunused-function] 380 | static void _calc_distance_array(coordinate* ref, int numref, coordinate* conf, | ^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MDAnalysis/lib/nsgrid.o -o /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/nsgrid.cpython-39-x86_64-linux-gnu.so dh: command-omitted: The call to "debian/rules override_dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3.10 setup.py install --root /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis Attempting to autodetect OpenMP support... Compiler supports OpenMP Will attempt to use Cython. running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py copying MDAnalysis/authors.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis running build_ext running install_lib creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10 creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/due.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/exceptions.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/units.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/version.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/align.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/bat.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/contacts.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/density.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/diffusionmap.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/dihedrals.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/distances.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/gnm.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/helix_analysis.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/leaflet.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/lineardensity.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/msd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/nuclinfo.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/pca.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/polymer.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/psa.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/rdf.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/rms.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/waterdynamics.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/data copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/data/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/data copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/data/filenames.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/data copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/data/janin_ref_data.npy -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/data copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/data/rama_ref_data.npy -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/data creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/bootstrap.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/confdistmatrix.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/covariance.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/similarity.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/utils.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/clustering copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/clustering copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/clustering copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/clustering/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/clustering copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/clustering/cluster.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/clustering copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/clustering creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/encore/cutils.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hbonds copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hbonds/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hbonds copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hbonds creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hole2 copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hole2/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hole2 copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hole2/hole.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hole2 copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hole2/templates.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hole2 copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hole2/utils.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hole2 creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hydrogenbonds copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hydrogenbonds copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hydrogenbonds copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hydrogenbonds copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hydrogenbonds creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/legacy copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/legacy/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/legacy copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/analysis/legacy/x3dna.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/legacy creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/auxiliary copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/auxiliary/XVG.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/auxiliary copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/auxiliary/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/auxiliary copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/auxiliary/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/auxiliary copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/auxiliary/core.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/auxiliary creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters/OpenMM.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters/OpenMMParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters/ParmEd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters/ParmEdParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters/RDKit.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters/RDKitParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/converters/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/CRD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/DCD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/DLPoly.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/DMS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/FHIAIMS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/GMS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/GRO.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/GSD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/H5MD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/INPCRD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/LAMMPS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/MMTF.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/MOL2.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/NAMDBIN.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/PDB.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/PDBQT.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/PQR.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/ParmEd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/TRJ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/TRR.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/TRZ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/TXYZ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/XDR.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/XTC.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/XYZ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/chain.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/chemfiles.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/core.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/memory.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/coordinates/null.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core/_get_readers.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core/accessors.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core/groups.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core/selection.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core/topology.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core/topologyattrs.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core/topologyobjects.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/core/universe.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/NeighborSearch.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/correlations.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/distances.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/log.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/mdamath.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/picklable_file_io.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/pkdtree.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/transformations.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/util.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/formats copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/formats/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/formats copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/formats/libdcd.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/formats copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/formats/libmdaxdr.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/formats copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/formats/cython_util.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/formats copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/c_distances.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/c_distances_openmp.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/qcprot.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/_transformations.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/_cutil.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/_augment.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/lib/nsgrid.cpython-310-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections/charmm.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections/gromacs.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections/jmol.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections/pymol.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/selections/vmd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/tests copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/tests/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/tests copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/tests/datafiles.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/tests creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/CRDParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/DLPolyParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/DMSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/ExtendedPDBParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/FHIAIMSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/GMSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/GROParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/GSDParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/HoomdXMLParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/ITPParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/LAMMPSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/MMTFParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/MOL2Parser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/MinimalParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/PDBParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/PDBQTParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/PQRParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/PSFParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/ParmEdParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/TOPParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/TPRParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/TXYZParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/XYZParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/core.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/guessers.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/tables.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/tpr copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/tpr/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/tpr copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/tpr/obj.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/tpr copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/tpr/setting.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/tpr copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/topology/tpr/utils.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/tpr creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations/boxdimensions.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations/fit.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations/positionaveraging.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations/rotate.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations/translate.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/transformations/wrap.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/visualization copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/visualization/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/visualization copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/visualization/streamlines.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/visualization copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/visualization/streamlines_3D.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/visualization copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.10_mdanalysis/build/MDAnalysis/authors.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/due.py to due.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/exceptions.py to exceptions.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/units.py to units.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/version.py to version.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/align.py to align.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/base.py to base.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/bat.py to bat.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/contacts.py to contacts.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/density.py to density.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/diffusionmap.py to diffusionmap.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/dihedrals.py to dihedrals.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/distances.py to distances.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/gnm.py to gnm.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/helix_analysis.py to helix_analysis.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/leaflet.py to leaflet.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/lineardensity.py to lineardensity.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/msd.py to msd.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/nuclinfo.py to nuclinfo.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/pca.py to pca.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/polymer.py to polymer.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/psa.py to psa.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/rdf.py to rdf.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/rms.py to rms.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/waterdynamics.py to waterdynamics.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/data/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/data/filenames.py to filenames.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/bootstrap.py to bootstrap.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/confdistmatrix.py to confdistmatrix.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/covariance.py to covariance.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/similarity.py to similarity.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/utils.py to utils.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/clustering/ClusterCollection.py to ClusterCollection.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py to ClusteringMethod.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/clustering/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/clustering/cluster.py to cluster.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py to DimensionalityReductionMethod.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py to reduce_dimensionality.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hbonds/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hbonds/hbond_autocorrel.py to hbond_autocorrel.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hole2/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hole2/hole.py to hole.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hole2/templates.py to templates.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hole2/utils.py to utils.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hydrogenbonds/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py to hbond_analysis.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py to hbond_autocorrel.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py to wbridge_analysis.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/legacy/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/analysis/legacy/x3dna.py to x3dna.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/auxiliary/XVG.py to XVG.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/auxiliary/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/auxiliary/base.py to base.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/auxiliary/core.py to core.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters/OpenMM.py to OpenMM.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters/OpenMMParser.py to OpenMMParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters/ParmEd.py to ParmEd.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters/ParmEdParser.py to ParmEdParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters/RDKit.py to RDKit.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters/RDKitParser.py to RDKitParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/converters/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/CRD.py to CRD.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/DCD.py to DCD.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/DLPoly.py to DLPoly.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/DMS.py to DMS.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/FHIAIMS.py to FHIAIMS.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/GMS.py to GMS.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/GRO.py to GRO.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/GSD.py to GSD.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/H5MD.py to H5MD.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/INPCRD.py to INPCRD.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/LAMMPS.py to LAMMPS.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/MMTF.py to MMTF.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/MOL2.py to MOL2.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/NAMDBIN.py to NAMDBIN.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/PDB.py to PDB.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/PDBQT.py to PDBQT.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/PQR.py to PQR.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/ParmEd.py to ParmEd.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/TRJ.py to TRJ.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/TRR.py to TRR.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/TRZ.py to TRZ.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/TXYZ.py to TXYZ.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/XDR.py to XDR.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/XTC.py to XTC.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/XYZ.py to XYZ.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/base.py to base.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/chain.py to chain.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/chemfiles.py to chemfiles.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/core.py to core.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/memory.py to memory.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/coordinates/null.py to null.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core/_get_readers.py to _get_readers.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core/accessors.py to accessors.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core/groups.py to groups.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core/selection.py to selection.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core/topology.py to topology.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core/topologyattrs.py to topologyattrs.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core/topologyobjects.py to topologyobjects.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/core/universe.py to universe.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/NeighborSearch.py to NeighborSearch.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/correlations.py to correlations.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/distances.py to distances.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/log.py to log.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/mdamath.py to mdamath.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/picklable_file_io.py to picklable_file_io.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/pkdtree.py to pkdtree.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/transformations.py to transformations.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/util.py to util.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/lib/formats/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections/base.py to base.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections/charmm.py to charmm.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections/gromacs.py to gromacs.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections/jmol.py to jmol.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections/pymol.py to pymol.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/selections/vmd.py to vmd.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/tests/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/tests/datafiles.py to datafiles.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/CRDParser.py to CRDParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/DLPolyParser.py to DLPolyParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/DMSParser.py to DMSParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/ExtendedPDBParser.py to ExtendedPDBParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/FHIAIMSParser.py to FHIAIMSParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/GMSParser.py to GMSParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/GROParser.py to GROParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/GSDParser.py to GSDParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/HoomdXMLParser.py to HoomdXMLParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/ITPParser.py to ITPParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/LAMMPSParser.py to LAMMPSParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/MMTFParser.py to MMTFParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/MOL2Parser.py to MOL2Parser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/MinimalParser.py to MinimalParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/PDBParser.py to PDBParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/PDBQTParser.py to PDBQTParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/PQRParser.py to PQRParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/PSFParser.py to PSFParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/ParmEdParser.py to ParmEdParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/TOPParser.py to TOPParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/TPRParser.py to TPRParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/TXYZParser.py to TXYZParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/XYZParser.py to XYZParser.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/base.py to base.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/core.py to core.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/guessers.py to guessers.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/tables.py to tables.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/tpr/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/tpr/obj.py to obj.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/tpr/setting.py to setting.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/topology/tpr/utils.py to utils.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations/base.py to base.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations/boxdimensions.py to boxdimensions.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations/fit.py to fit.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations/positionaveraging.py to positionaveraging.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations/rotate.py to rotate.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations/translate.py to translate.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/transformations/wrap.py to wrap.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/visualization/__init__.py to __init__.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/visualization/streamlines.py to streamlines.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/visualization/streamlines_3D.py to streamlines_3D.cpython-310.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis/authors.py to authors.cpython-310.pyc running install_egg_info running egg_info creating MDAnalysis.egg-info writing MDAnalysis.egg-info/PKG-INFO writing dependency_links to MDAnalysis.egg-info/dependency_links.txt writing requirements to MDAnalysis.egg-info/requires.txt writing top-level names to MDAnalysis.egg-info/top_level.txt writing manifest file 'MDAnalysis.egg-info/SOURCES.txt' reading manifest file 'MDAnalysis.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching 'doc/html/html' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'MDAnalysis.egg-info/SOURCES.txt' Copying MDAnalysis.egg-info to /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.10/dist-packages/MDAnalysis-2.0.0.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis Attempting to autodetect OpenMP support... Compiler supports OpenMP Will attempt to use Cython. running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py copying MDAnalysis/authors.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis running build_ext running install_lib creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9 creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/due.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/exceptions.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/units.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/version.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/align.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/bat.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/contacts.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/density.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/diffusionmap.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/dihedrals.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/distances.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/gnm.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/helix_analysis.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/leaflet.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/lineardensity.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/msd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/nuclinfo.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/pca.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/polymer.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/psa.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/rdf.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/rms.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/waterdynamics.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/data copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/data/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/data copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/data/filenames.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/data copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/data/janin_ref_data.npy -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/data copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/data/rama_ref_data.npy -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/data creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/bootstrap.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/confdistmatrix.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/covariance.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/similarity.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/utils.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/clustering copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/clustering copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/clustering copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/clustering/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/clustering copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/clustering/cluster.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/clustering copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/clustering creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/encore/cutils.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hbonds copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hbonds/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hbonds copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hbonds creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hole2 copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hole2/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hole2 copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hole2/hole.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hole2 copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hole2/templates.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hole2 copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hole2/utils.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hole2 creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hydrogenbonds copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hydrogenbonds copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hydrogenbonds copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hydrogenbonds copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hydrogenbonds creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/legacy copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/legacy/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/legacy copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/analysis/legacy/x3dna.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/legacy creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/auxiliary copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/auxiliary/XVG.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/auxiliary copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/auxiliary/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/auxiliary copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/auxiliary/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/auxiliary copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/auxiliary/core.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/auxiliary creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters/OpenMM.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters/OpenMMParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters/ParmEd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters/ParmEdParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters/RDKit.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters/RDKitParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/converters/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/CRD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/DCD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/DLPoly.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/DMS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/FHIAIMS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/GMS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/GRO.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/GSD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/H5MD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/INPCRD.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/LAMMPS.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/MMTF.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/MOL2.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/NAMDBIN.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/PDB.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/PDBQT.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/PQR.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/ParmEd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/TRJ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/TRR.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/TRZ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/TXYZ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/XDR.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/XTC.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/XYZ.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/chain.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/chemfiles.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/core.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/memory.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/coordinates/null.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core/_get_readers.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core/accessors.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core/groups.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core/selection.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core/topology.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core/topologyattrs.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core/topologyobjects.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/core/universe.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/NeighborSearch.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/correlations.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/distances.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/log.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/mdamath.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/picklable_file_io.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/pkdtree.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/transformations.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/util.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/formats copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/formats/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/formats copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/formats/libdcd.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/formats copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/formats/libmdaxdr.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/formats copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/formats/cython_util.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/formats copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/c_distances.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/c_distances_openmp.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/qcprot.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/_transformations.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/_cutil.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/_augment.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/lib/nsgrid.cpython-39-x86_64-linux-gnu.so -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections/charmm.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections/gromacs.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections/jmol.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections/pymol.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/selections/vmd.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/tests copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/tests/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/tests copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/tests/datafiles.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/tests creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/CRDParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/DLPolyParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/DMSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/ExtendedPDBParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/FHIAIMSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/GMSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/GROParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/GSDParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/HoomdXMLParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/ITPParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/LAMMPSParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/MMTFParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/MOL2Parser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/MinimalParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/PDBParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/PDBQTParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/PQRParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/PSFParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/ParmEdParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/TOPParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/TPRParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/TXYZParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/XYZParser.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/core.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/guessers.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/tables.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/tpr copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/tpr/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/tpr copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/tpr/obj.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/tpr copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/tpr/setting.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/tpr copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/topology/tpr/utils.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/tpr creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations/base.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations/boxdimensions.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations/fit.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations/positionaveraging.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations/rotate.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations/translate.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/transformations/wrap.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations creating /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/visualization copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/visualization/__init__.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/visualization copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/visualization/streamlines.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/visualization copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/visualization/streamlines_3D.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/visualization copying /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/.pybuild/cpython3_3.9_mdanalysis/build/MDAnalysis/authors.py -> /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/due.py to due.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/exceptions.py to exceptions.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/units.py to units.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/version.py to version.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/align.py to align.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/base.py to base.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/bat.py to bat.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/contacts.py to contacts.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/density.py to density.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/diffusionmap.py to diffusionmap.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/dihedrals.py to dihedrals.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/distances.py to distances.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/gnm.py to gnm.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/helix_analysis.py to helix_analysis.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/leaflet.py to leaflet.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/lineardensity.py to lineardensity.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/msd.py to msd.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/nuclinfo.py to nuclinfo.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/pca.py to pca.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/polymer.py to polymer.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/psa.py to psa.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/rdf.py to rdf.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/rms.py to rms.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/waterdynamics.py to waterdynamics.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/data/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/data/filenames.py to filenames.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/bootstrap.py to bootstrap.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/confdistmatrix.py to confdistmatrix.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/covariance.py to covariance.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/similarity.py to similarity.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/utils.py to utils.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/clustering/ClusterCollection.py to ClusterCollection.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py to ClusteringMethod.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/clustering/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/clustering/cluster.py to cluster.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py to DimensionalityReductionMethod.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py to reduce_dimensionality.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hbonds/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hbonds/hbond_autocorrel.py to hbond_autocorrel.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hole2/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hole2/hole.py to hole.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hole2/templates.py to templates.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hole2/utils.py to utils.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hydrogenbonds/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py to hbond_analysis.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py to hbond_autocorrel.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py to wbridge_analysis.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/legacy/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/analysis/legacy/x3dna.py to x3dna.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/auxiliary/XVG.py to XVG.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/auxiliary/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/auxiliary/base.py to base.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/auxiliary/core.py to core.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters/OpenMM.py to OpenMM.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters/OpenMMParser.py to OpenMMParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters/ParmEd.py to ParmEd.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters/ParmEdParser.py to ParmEdParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters/RDKit.py to RDKit.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters/RDKitParser.py to RDKitParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/converters/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/CRD.py to CRD.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/DCD.py to DCD.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/DLPoly.py to DLPoly.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/DMS.py to DMS.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/FHIAIMS.py to FHIAIMS.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/GMS.py to GMS.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/GRO.py to GRO.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/GSD.py to GSD.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/H5MD.py to H5MD.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/INPCRD.py to INPCRD.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/LAMMPS.py to LAMMPS.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/MMTF.py to MMTF.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/MOL2.py to MOL2.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/NAMDBIN.py to NAMDBIN.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/PDB.py to PDB.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/PDBQT.py to PDBQT.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/PQR.py to PQR.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/ParmEd.py to ParmEd.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/TRJ.py to TRJ.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/TRR.py to TRR.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/TRZ.py to TRZ.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/TXYZ.py to TXYZ.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/XDR.py to XDR.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/XTC.py to XTC.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/XYZ.py to XYZ.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/base.py to base.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/chain.py to chain.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/chemfiles.py to chemfiles.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/core.py to core.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/memory.py to memory.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/coordinates/null.py to null.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core/_get_readers.py to _get_readers.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core/accessors.py to accessors.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core/groups.py to groups.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core/selection.py to selection.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core/topology.py to topology.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core/topologyattrs.py to topologyattrs.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core/topologyobjects.py to topologyobjects.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/core/universe.py to universe.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/NeighborSearch.py to NeighborSearch.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/correlations.py to correlations.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/distances.py to distances.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/log.py to log.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/mdamath.py to mdamath.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/picklable_file_io.py to picklable_file_io.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/pkdtree.py to pkdtree.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/transformations.py to transformations.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/util.py to util.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/lib/formats/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections/base.py to base.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections/charmm.py to charmm.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections/gromacs.py to gromacs.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections/jmol.py to jmol.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections/pymol.py to pymol.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/selections/vmd.py to vmd.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/tests/datafiles.py to datafiles.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/CRDParser.py to CRDParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/DLPolyParser.py to DLPolyParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/DMSParser.py to DMSParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/ExtendedPDBParser.py to ExtendedPDBParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/FHIAIMSParser.py to FHIAIMSParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/GMSParser.py to GMSParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/GROParser.py to GROParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/GSDParser.py to GSDParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/HoomdXMLParser.py to HoomdXMLParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/ITPParser.py to ITPParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/LAMMPSParser.py to LAMMPSParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/MMTFParser.py to MMTFParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/MOL2Parser.py to MOL2Parser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/MinimalParser.py to MinimalParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/PDBParser.py to PDBParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/PDBQTParser.py to PDBQTParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/PQRParser.py to PQRParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/PSFParser.py to PSFParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/ParmEdParser.py to ParmEdParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/TOPParser.py to TOPParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/TPRParser.py to TPRParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/TXYZParser.py to TXYZParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/XYZParser.py to XYZParser.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/base.py to base.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/core.py to core.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/guessers.py to guessers.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/tables.py to tables.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/tpr/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/tpr/obj.py to obj.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/tpr/setting.py to setting.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/topology/tpr/utils.py to utils.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations/base.py to base.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations/boxdimensions.py to boxdimensions.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations/fit.py to fit.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations/positionaveraging.py to positionaveraging.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations/rotate.py to rotate.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations/translate.py to translate.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/transformations/wrap.py to wrap.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/visualization/__init__.py to __init__.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/visualization/streamlines.py to streamlines.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/visualization/streamlines_3D.py to streamlines_3D.cpython-39.pyc byte-compiling /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis/authors.py to authors.cpython-39.pyc running install_egg_info running egg_info writing MDAnalysis.egg-info/PKG-INFO writing dependency_links to MDAnalysis.egg-info/dependency_links.txt writing requirements to MDAnalysis.egg-info/requires.txt writing top-level names to MDAnalysis.egg-info/top_level.txt reading manifest file 'MDAnalysis.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching 'doc/html/html' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'MDAnalysis.egg-info/SOURCES.txt' Copying MDAnalysis.egg-info to /build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1/debian/python3-mdanalysis/usr/lib/python3.9/dist-packages/MDAnalysis-2.0.0.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -a -O--buildsystem=pybuild dh_sphinxdoc -a -O--buildsystem=pybuild dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1' dh_numpy3 make[1]: Leaving directory '/build/mdanalysis-axmzeb/mdanalysis-2.0.0+dfsg1' dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-mdanalysis: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-mdanalysis: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-mdanalysis: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-mdanalysis: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-mdanalysis-dbgsym' in '../python3-mdanalysis-dbgsym_2.0.0+dfsg1-4_amd64.deb'. dpkg-deb: building package 'python3-mdanalysis' in '../python3-mdanalysis_2.0.0+dfsg1-4_amd64.deb'. dpkg-genbuildinfo --build=any -O../mdanalysis_2.0.0+dfsg1-4_amd64.buildinfo dpkg-genchanges --build=any -O../mdanalysis_2.0.0+dfsg1-4_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from mdanalysis-2.0.0+dfsg1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/mdanalysis-axmzeb /tmp/mdanalysis-2.0.0+dfsg1-4q2ycenri I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.yCDUrwARMN... I: success in 1112.9425 seconds md5: python3-mdanalysis-dbgsym_2.0.0+dfsg1-4_amd64.deb: OK md5: python3-mdanalysis_2.0.0+dfsg1-4_amd64.deb: OK sha1: python3-mdanalysis-dbgsym_2.0.0+dfsg1-4_amd64.deb: OK sha1: python3-mdanalysis_2.0.0+dfsg1-4_amd64.deb: OK sha256: python3-mdanalysis-dbgsym_2.0.0+dfsg1-4_amd64.deb: OK sha256: python3-mdanalysis_2.0.0+dfsg1-4_amd64.deb: OK Checksums: OK