Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/mash/mash_2.2.2+dfsg-2_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/mash-2.2.2+dfsg-2guyujs5_/mash_2.2.2+dfsg-2_all.buildinfo Get source package info: mash=2.2.2+dfsg-2 Source URL: http://snapshot.notset.fr/mr/package/mash/2.2.2+dfsg-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=asciidoctor=2.0.12-2 autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.49 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20210119 capnproto=0.7.0-7 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.3 debianutils=4.11.2 dh-autoreconf=20 dh-strip-nondeterminism=1.11.0-1 diffutils=1:3.7-5 docutils-common=0.16+dfsg-3 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210201-1 file=1:5.39-3 findutils=4.8.0-1 fonts-mathjax=2.7.9+dfsg-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblkid1=2.36.1-7 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcapnp-0.7.0=0.7.0-7 libcapnp-dev=0.7.0-7 libcc1-0=10.2.1-6 libcom-err2=1.46.1-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.256 libdebhelper-perl=13.3.3 libdpkg-perl=1.20.7.1 libedit2=3.1-20191231-2+b1 libelf1=0.183-1 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.11.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-3 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgsl-dev=2.6+dfsg-2 libgsl25=2.6+dfsg-2 libgslcblas0=2.6+dfsg-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-6 libisl23=0.23-1 libitm1=10.2.1-6 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-mathjax=2.7.9+dfsg-1 libjs-sphinxdoc=3.4.3-1 libjs-underscore=1.9.1~dfsg-1 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-3 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpdec3=2.5.1-1 libmpfr6=4.1.0-3 libmurmurhash-dev=1.5-2 libmurmurhash2=1.5-2 libncursesw6=6.2+20201114-2 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-4 libpam-modules-bin=1.4.0-4 libpam-runtime=1.4.0-4 libpam0g=1.4.0-4 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-2 libpipeline1=1.5.3-1 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-4 libpython3.9-stdlib=3.9.1-4 libquadmath0=10.2.1-6 libreadline8=8.1-1 libruby2.7=2.7.2-4 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.36.1-7 libsqlite3-0=3.34.1-2 libssl1.1=1.1.1j-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.3-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-1 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libxml2=2.9.10+dfsg-6.3+b1 libyaml-0-2=0.2.2-1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.13-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 openssl=1.1.1j-1 patch=2.7.6-7 perl=5.32.1-2 perl-base=5.32.1-2 perl-modules-5.32=5.32.1-2 po-debconf=1.0.21+nmu1 python-babel-localedata=2.8.0+dfsg.1-6 python3=3.9.1-1 python3-alabaster=0.7.8-1.1 python3-babel=2.8.0+dfsg.1-6 python3-certifi=2020.6.20-1 python3-chardet=4.0.0-1 python3-distutils=3.9.2-1 python3-docutils=0.16+dfsg-3 python3-idna=2.10-1 python3-imagesize=1.2.0-2 python3-jinja2=2.11.2-1 python3-lib2to3=3.9.2-1 python3-markupsafe=1.1.1-1+b3 python3-minimal=3.9.1-1 python3-packaging=20.9-2 python3-pkg-resources=52.0.0-1 python3-pygments=2.7.1+dfsg-1 python3-pyparsing=2.4.7-1 python3-requests=2.25.1+dfsg-2 python3-roman=2.0.0-5 python3-six=1.15.0-2 python3-snowballstemmer=2.1.0-1 python3-sphinx=3.4.3-1 python3-tz=2021.1-1 python3-urllib3=1.26.2-1 python3.9=3.9.1-4 python3.9-minimal=3.9.1-4 rake=13.0.3-1 readline-common=8.1-1 ruby=1:2.7+2 ruby-asciidoctor=2.0.12-2 ruby-minitest=5.13.0-1 ruby-net-telnet=0.1.1-2 ruby-power-assert=1.1.7-2 ruby-rubygems=3.2.5-2 ruby-test-unit=3.3.9-1 ruby-xmlrpc=0.3.0-2 ruby2.7=2.7.2-4 rubygems-integration=1.18 sed=4.7-1 sensible-utils=0.0.14 sgml-base=1.30 sphinx-common=3.4.3-1 sysvinit-utils=2.96-5 tar=1.34+dfsg-1 tzdata=2021a-1 util-linux=2.36.1-7 xml-core=0.18+nmu1 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210902T205533Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210218T111050Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d mash=2.2.2+dfsg-2 && mkdir -p /build/mash-xKRBUO && dpkg-source --no-check -x /*.dsc /build/mash-xKRBUO/mash-2.2.2+dfsg && chown -R builduser:builduser /build/mash-xKRBUO" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mash-xKRBUO/mash-2.2.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1613839444" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/mash-xKRBUO /tmp/mash-2.2.2+dfsg-2guyujs5_ bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210218T111050Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.GK7RAS4s5C as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.GK7RAS4s5C Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210218T111050Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210218T111050Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (963 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4662 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210902T205533Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210218T111050Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.GK7RAS4s5C Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210902T205533Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210218T111050Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210902T205533Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210902T205533Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210902T205533Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210902T205533Z unstable/main amd64 Packages [11.9 MB] Fetched 34.6 MB in 31s (1118 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.GK7RAS4s5C I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d mash=2.2.2+dfsg-2 && mkdir -p /build/mash-xKRBUO && dpkg-source --no-check -x /*.dsc /build/mash-xKRBUO/mash-2.2.2+dfsg && chown -R builduser:builduser /build/mash-xKRBUO"' exec /tmp/mmdebstrap.GK7RAS4s5C Reading package lists... NOTICE: 'mash' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mash.git Please use: git clone https://salsa.debian.org/med-team/mash.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5585 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main mash 2.2.2+dfsg-2 (dsc) [2322 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main mash 2.2.2+dfsg-2 (tar) [3424 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main mash 2.2.2+dfsg-2 (diff) [2159 kB] Fetched 5585 kB in 5s (1088 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'mash_2.2.2+dfsg-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting mash in /build/mash-xKRBUO/mash-2.2.2+dfsg dpkg-source: info: unpacking mash_2.2.2+dfsg.orig.tar.xz dpkg-source: info: unpacking mash_2.2.2+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying use_debian_mathjax.patch dpkg-source: info: applying drop_memcpy_wrapper.patch dpkg-source: info: applying link_dynamically_against_capnp.patch dpkg-source: info: applying parallel.patch dpkg-source: info: applying use_debian_packaged_libmurmurhash.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mash-xKRBUO/mash-2.2.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1613839444" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.GK7RAS4s5C dpkg-buildpackage: info: source package mash dpkg-buildpackage: info: source version 2.2.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . fakeroot debian/rules clean dh clean --with sphinxdoc debian/rules override_dh_auto_clean make[1]: Entering directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' dh_auto_clean rm -rf /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/sphinxdoc /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/man make[1]: Leaving directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' dh_clean debian/rules build-indep dh build-indep --with sphinxdoc dh_update_autotools_config -i dh_autoreconf -i debian/rules override_dh_auto_configure make[1]: Entering directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' dh_auto_configure -- --with-capnp=/usr --with-gsl=/usr --prefix=/build/mash-xKRBUO/mash-2.2.2+dfsg/debian/tmp/usr ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-capnp=/usr --with-gsl=/usr --prefix=/build/mash-xKRBUO/mash-2.2.2\+dfsg/debian/tmp/usr checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for capnp... yes checking capnp/common.h usability... yes checking capnp/common.h presence... yes checking for capnp/common.h... yes checking gsl/gsl_cdf.h usability... yes checking gsl/gsl_cdf.h presence... yes checking for gsl/gsl_cdf.h... yes configure: creating ./config.status config.status: creating Makefile make[1]: Leaving directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' dh_auto_build make -j4 make[2]: Entering directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' cd src/mash/capnp;export PATH=/usr/bin/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin;capnp compile -I /usr/include -oc++ MinHash.capnp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Command.o src/mash/Command.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandBounds.o src/mash/CommandBounds.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandContain.o src/mash/CommandContain.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandDistance.o src/mash/CommandDistance.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandScreen.o src/mash/CommandScreen.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandTriangle.o src/mash/CommandTriangle.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandFind.o src/mash/CommandFind.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandInfo.o src/mash/CommandInfo.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandPaste.o src/mash/CommandPaste.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandSketch.o src/mash/CommandSketch.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandList.o src/mash/CommandList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/hash.o src/mash/hash.cpp src/mash/hash.cpp: In function ‘hash_u getHash(const char*, int, uint32_t, bool)’: src/mash/hash.cpp:23:48: warning: ‘void MurmurHash3_x64_128(const void*, int, uint32_t, void*)’ is deprecated [-Wdeprecated-declarations] 23 | MurmurHash3_x64_128(seq, length, seed, data); | ^ In file included from src/mash/hash.cpp:8: /usr/include/murmurhash.h:36:1: note: declared here 36 | MurmurHash3_x64_128(const void *data, int len, uint32_t seed, void *out); | ^~~~~~~~~~~~~~~~~~~ g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashList.o src/mash/HashList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashPriorityQueue.o src/mash/HashPriorityQueue.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashSet.o src/mash/HashSet.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/MinHashHeap.o src/mash/MinHashHeap.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/mash.o src/mash/mash.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Sketch.o src/mash/Sketch.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/sketchParameterSetup.o src/mash/sketchParameterSetup.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/capnp/MinHash.capnp.o src/mash/capnp/MinHash.capnp.c++ g++ -g -O2 -ffile-prefix-map=/build/mash-xKRBUO/mash-2.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o mash src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandScreen.o src/mash/CommandTriangle.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o -lkj -lcapnp -L/usr/lib -lgsl -lgslcblas -lstdc++ -lz -lm -lpthread -lmurmurhash -Wl,-z,relro -Wl,-z,now ar -cr libmash.a src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandScreen.o src/mash/CommandTriangle.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o ranlib libmash.a make[2]: Leaving directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' sphinx-build doc/sphinx /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/sphinxdoc Running Sphinx v3.4.3 making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [html]: targets for 5 source files that are out of date updating environment: [new config] 5 added, 0 changed, 0 removed reading sources... [ 20%] data reading sources... [ 40%] distances reading sources... [ 60%] index reading sources... [ 80%] sketches reading sources... [100%] tutorials /build/mash-xKRBUO/mash-2.2.2+dfsg/doc/sphinx/tutorials.rst:9: WARNING: Unknown directive type "download". .. download:: /build/mash-xKRBUO/mash-2.2.2+dfsg/doc/sphinx/tutorials.rst:10: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/mash-xKRBUO/mash-2.2.2+dfsg/doc/sphinx/tutorials.rst:66: WARNING: Unknown directive type "download". .. download:: /build/mash-xKRBUO/mash-2.2.2+dfsg/doc/sphinx/tutorials.rst:72: WARNING: Unknown directive type "download". .. download:: looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 20%] data writing output... [ 40%] distances writing output... [ 60%] index writing output... [ 80%] sketches writing output... [100%] tutorials generating indices... genindex done writing additional pages... search done copying images... [100%] logo_med.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 5 warnings. The HTML pages are in debian/sphinxdoc. make[1]: Leaving directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' dh_auto_test --no-parallel make -j1 test VERBOSE=1 make[2]: Entering directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' cd test ; ../mash sketch -o genomes.msh genome1.fna genome2.fna genome3.fna Sketching genome1.fna... Sketching genome2.fna... Sketching genome3.fna... Writing to genomes.msh... cd test ; ../mash sketch -r -I reads reads1.fastq reads2.fastq -o reads.msh Estimated genome size: 502360 Estimated coverage: 1.115 Writing to reads.msh... ./mash info -d test/genomes.msh > test/genomes.json ./mash info -d test/reads.msh > test/reads.json diff test/genomes.json test/ref/genomes.json diff test/reads.json test/ref/reads.json ./mash dist test/genomes.msh test/reads.msh > test/genomes.dist diff test/genomes.dist test/ref/genomes.dist cd test ; ../mash screen genomes.msh reads1.fastq reads2.fastq > screen Loading genomes.msh... 1419 distinct hashes. Streaming from 2 inputs... Estimated distinct k-mers in mixture: 502359 Summing shared... Computing coverage medians... Writing output... diff test/screen test/ref/screen make[2]: Leaving directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' make[1]: Leaving directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep dh binary-indep --with sphinxdoc dh_testroot -i dh_prep -i dh_auto_install -i make -j4 install DESTDIR=/build/mash-xKRBUO/mash-2.2.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' mkdir -p /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/tmp/usr/bin/ mkdir -p /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/tmp/usr/lib/ mkdir -p /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/tmp/usr/include/ mkdir -p /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/tmp/usr/include/mash mkdir -p /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/tmp/usr/include/mash/capnp cp `pwd`/mash /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/tmp/usr/bin/ cp `pwd`/libmash.a /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/tmp/usr/lib/ cp `pwd`/src/mash/*.h /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/tmp/usr/include/mash/ cp `pwd`/src/mash/capnp/MinHash.capnp.h /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/tmp/usr/include/mash/capnp/ make[1]: Leaving directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' dh_install -i dh_installdocs -i dh_sphinxdoc -i dh_installchangelogs -i debian/rules override_dh_installman make[1]: Entering directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' mkdir -p /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/man asciidoctor -a docdate='' -b manpage /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/man_src/*.adoc cp /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/man_src/*.? /build/mash-xKRBUO/mash-2.2.2+dfsg/debian/man dh_installman -- make[1]: Leaving directory '/build/mash-xKRBUO/mash-2.2.2+dfsg' dh_perl -i dh_link -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dpkg-gencontrol: warning: package mash-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: package mash-doc: substitution variable ${sphinxdoc:Depends} unused, but is defined dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'mash-doc' in '../mash-doc_2.2.2+dfsg-2_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../mash_2.2.2+dfsg-2_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/mash-xKRBUO /tmp/mash-2.2.2+dfsg-2guyujs5_ I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.GK7RAS4s5C... I: success in 590.7352 seconds md5: mash-doc_2.2.2+dfsg-2_all.deb: OK sha1: mash-doc_2.2.2+dfsg-2_all.deb: OK sha256: mash-doc_2.2.2+dfsg-2_all.deb: OK Checksums: OK