Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/mapdamage/mapdamage_2.2.1+dfsg-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/mapdamage-2.2.1+dfsg-1kj7t9h6z/mapdamage_2.2.1+dfsg-1_all.buildinfo Get source package info: mapdamage=2.2.1+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/mapdamage/2.2.1+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-6 binutils=2.34-8 binutils-common=2.34-8 binutils-x86-64-linux-gnu=2.34-8 bsdextrautils=2.35.2-6 bsdutils=1:2.35.2-6 build-essential=12.8 bzip2=1.0.8-3 ca-certificates=20200601 coreutils=8.32-2 cpp=4:9.2.1-3.1 cpp-9=9.3.0-14 dash=0.5.10.2-7 debconf=1.5.74 debhelper=13.1 debianutils=4.11 dh-autoreconf=19 dh-python=4.20200315 dh-strip-nondeterminism=1.8.1-1 diffutils=1:3.7-3 dmsetup=2:1.02.167-1+b1 dpkg=1.20.2 dpkg-dev=1.20.2 dwz=0.13-5 file=1:5.38-5 findutils=4.7.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:9.2.1-3.1 g++-9=9.3.0-14 gcc=4:9.2.1-3.1 gcc-10-base=10.1.0-4 gcc-9=9.3.0-14 gcc-9-base=9.3.0-14 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.4-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libargon2-1=0~20171227-0.2 libasan5=9.3.0-14 libatomic1=10.1.0-4 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libbinutils=2.34-8 libblas3=3.9.0-2 libblkid1=2.35.2-6 libbrotli1=1.0.7-6.1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-3 libc-bin=2.30-8 libc-dev-bin=2.30-8 libc6=2.30-8 libc6-dev=2.30-8 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2.2 libcc1-0=10.1.0-4 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.16-1 libcrypt1=1:4.4.16-1 libcryptsetup12=2:2.3.3-1 libctf-nobfd0=2.34-8 libctf0=2.34-8 libcurl3-gnutls=7.68.0-1 libcurl4=7.68.0-1 libdatrie1=0.2.12-3 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.252 libdebhelper-perl=13.1 libdeflate0=1.6-1 libdevmapper1.02.1=2:1.02.167-1+b1 libdpkg-perl=1.20.2 libelf1=0.176-1.1 libexpat1=2.2.9-1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.8.1-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.1-2 libfribidi0=1.0.8-2 libgcc-9-dev=9.3.0-14 libgcc-s1=10.1.0-4 libgcrypt20=1.8.5-5 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgfortran5=10.1.0-4 libglib2.0-0=2.64.3-1 libgmp10=2:6.2.0+dfsg-6 libgnutls30=3.6.14-2 libgomp1=10.1.0-4 libgpg-error0=1.38-1 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.17-10 libharfbuzz0b=2.6.7-1 libhogweed5=3.5.1+really3.5.1-2 libhts3=1.10.2-3 libice6=2:1.0.9-2 libicu67=67.1-2 libidn2-0=2.3.0-1 libisl22=0.22.1-1 libitm1=10.1.0-4 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:1.5.2-2+b1 libjson-c4=0.13.1+dfsg-9 libk5crypto3=1.17-10 libkeyutils1=1.6.1-2 libkrb5-3=1.17-10 libkrb5support0=1.17-10 liblapack3=3.9.0-2 libldap-2.4-2=2.4.50+dfsg-1 libldap-common=2.4.50+dfsg-1 liblsan0=10.1.0-4 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmount1=2.35.2-6 libmpc3=1.1.0-1 libmpdec2=2.4.2-3 libmpfr6=4.0.2-1 libncursesw6=6.2-1 libnettle7=3.5.1+really3.5.1-2 libnghttp2-14=1.41.0-2 libp11-kit0=0.23.20-1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpango-1.0-0=1.44.7-4 libpangocairo-1.0-0=1.44.7-4 libpangoft2-1.0-0=1.44.7-4 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libperl5.30=5.30.3-4 libpipeline1=1.5.2-2 libpixman-1-0=0.36.0-1 libpng16-16=1.6.37-2 libpsl5=0.21.0-1.1 libpython3-stdlib=3.8.2-3 libpython3.8-minimal=3.8.3-1 libpython3.8-stdlib=3.8.3-1 libquadmath0=10.1.0-4 libreadline8=8.0-4 librtmp1=2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.4.3-1+b1 libselinux1=3.0-1+b3 libsigsegv2=2.12-2 libsm6=2:1.2.3-1 libsmartcols1=2.35.2-6 libsqlite3-0=3.32.3-1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1g-1 libstdc++-9-dev=9.3.0-14 libstdc++6=10.1.0-4 libsub-override-perl=0.09-2 libsystemd0=245.6-1 libtasn1-6=4.16.0-2 libtcl8.6=8.6.10+dfsg-1 libthai-data=0.1.28-3 libthai0=0.1.28-3 libtiff5=4.1.0+git191117-2 libtinfo6=6.2-1 libtk8.6=8.6.10-1 libtool=2.4.6-14 libtsan0=10.1.0-4 libubsan1=10.1.0-4 libuchardet0=0.0.7-1 libudev1=245.6-1 libunistring2=0.9.10-4 libuuid1=2.35.2-6 libwebp6=0.6.1-2+b1 libx11-6=2:1.6.9-2+b1 libx11-data=2:1.6.9-2 libxau6=1:1.0.8-1+b2 libxcb-render0=1.14-2 libxcb-shm0=1.14-2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxft2=2.3.2-2 libxml2=2.9.10+dfsg-5+b1 libxrender1=1:0.9.10-1 libxss1=1:1.2.3-1 libxt6=1:1.1.5-1+b3 libzstd1=1.4.5+dfsg-2 linux-libc-dev=5.7.6-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-3 man-db=2.9.3-1 mawk=1.3.4.20200120-2 mime-support=3.64 ncurses-base=6.2-1 ncurses-bin=6.2-1 openssl=1.1.1g-1 patch=2.7.6-6 perl=5.30.3-4 perl-base=5.30.3-4 perl-modules-5.30=5.30.3-4 po-debconf=1.0.21 python3=3.8.2-3 python3-distutils=3.8.3-2 python3-lib2to3=3.8.3-2 python3-minimal=3.8.2-3 python3-pkg-resources=46.1.3-1 python3-pysam=0.15.4+ds-3 python3-setuptools=46.1.3-1 python3.8=3.8.3-1 python3.8-minimal=3.8.3-1 r-base-core=4.0.2-1 r-cran-assertthat=0.2.1-2 r-cran-backports=1.1.8-1 r-cran-callr=3.4.3-2 r-cran-cli=2.0.2-2 r-cran-codetools=0.2-16-2 r-cran-colorspace=1.4-1+dfsg-1+b1 r-cran-crayon=1.3.4-5 r-cran-desc=1.2.0-3 r-cran-digest=0.6.25-1+b1 r-cran-ellipsis=0.3.1-1 r-cran-evaluate=0.14-2 r-cran-fansi=0.4.1-1+b1 r-cran-farver=2.0.3-1+b1 r-cran-foreach=1.5.0-2 r-cran-gam=1.16.1-1+b1 r-cran-ggplot2=3.3.2+dfsg-1 r-cran-glue=1.4.1-1 r-cran-gtable=0.3.0+dfsg-2 r-cran-inline=0.3.15-3 r-cran-isoband=0.2.2-1 r-cran-iterators=1.0.12-2 r-cran-labeling=0.3-4 r-cran-lattice=0.20-41-1+b1 r-cran-lifecycle=0.2.0-2 r-cran-magrittr=1.5-6 r-cran-mass=7.3-51.6-1+b1 r-cran-matrix=1.2-18-1+b1 r-cran-mgcv=1.8-31-1+b1 r-cran-munsell=0.5.0-2 r-cran-nlme=3.1.148-1 r-cran-pillar=1.4.4-2 r-cran-pkgbuild=1.0.8-2 r-cran-pkgconfig=2.0.3-2 r-cran-pkgload=1.1.0-1 r-cran-praise=1.0.0-4 r-cran-prettyunits=1.1.1-2 r-cran-processx=3.4.2-1+b1 r-cran-ps=1.3.3-1+b1 r-cran-r6=2.4.1-2 r-cran-rcolorbrewer=1.1-2-3 r-cran-rlang=0.4.6-1+b1 r-cran-rprojroot=1.3-2-3 r-cran-rstudioapi=0.11-2 r-cran-scales=1.1.1-1 r-cran-testthat=2.3.2-2+b1 r-cran-tibble=3.0.1-1+b1 r-cran-utf8=1.1.4-1+b2 r-cran-vctrs=0.3.0-2 r-cran-viridislite=0.3.0-4 r-cran-withr=2.2.0-2 readline-common=8.0-4 sed=4.7-1 sensible-utils=0.0.12+nmu1 seqtk=1.3-1 sysvinit-utils=2.96-3 tar=1.30+dfsg-7 tzdata=2020a-1 ucf=3.0043 unzip=6.0-25 util-linux=2.35.2-6 x11-common=1:7.7+20 xdg-utils=1.1.3-2 xz-utils=5.2.4-1+b1 zip=3.0-11+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200715T085052Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200629T084301Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d mapdamage=2.2.1+dfsg-1 && mkdir -p /build/mapdamage-3LKXgc && dpkg-source --no-check -x /*.dsc /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg && chown -R builduser:builduser /build/mapdamage-3LKXgc" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1593469177" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/mapdamage-3LKXgc /tmp/mapdamage-2.2.1+dfsg-1kj7t9h6z bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200629T084301Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.0Ty3_y3v20 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.0Ty3_y3v20 Reading package lists... Building dependency tree... util-linux is already the newest version (2.35.2-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200629T084301Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200629T084301Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (890 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4632 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.30-8) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200715T085052Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200629T084301Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.0Ty3_y3v20 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200715T085052Z unstable InRelease [146 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20200629T084301Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20200715T085052Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200715T085052Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200715T085052Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20200715T085052Z unstable/main amd64 Packages [11.3 MB] Fetched 34.0 MB in 28s (1217 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.0Ty3_y3v20 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d mapdamage=2.2.1+dfsg-1 && mkdir -p /build/mapdamage-3LKXgc && dpkg-source --no-check -x /*.dsc /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg && chown -R builduser:builduser /build/mapdamage-3LKXgc"' exec /tmp/mmdebstrap.0Ty3_y3v20 Reading package lists... NOTICE: 'mapdamage' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mapdamage.git Please use: git clone https://salsa.debian.org/med-team/mapdamage.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 46.2 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main mapdamage 2.2.1+dfsg-1 (dsc) [2236 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main mapdamage 2.2.1+dfsg-1 (tar) [36.2 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main mapdamage 2.2.1+dfsg-1 (diff) [7696 B] Fetched 46.2 kB in 0s (606 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'mapdamage_2.2.1+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting mapdamage in /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg dpkg-source: info: unpacking mapdamage_2.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking mapdamage_2.2.1+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_seqtk.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1593469177" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.0Ty3_y3v20 dpkg-buildpackage: info: source package mapdamage dpkg-buildpackage: info: source version 2.2.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg' dh_auto_clean I: pybuild base:217: python3.8 setup.py clean running clean removing '/build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it rm -f mapdamage/_version.py rm -f mapdamage/tests/results/Fragmisincorporation_plot.pdf mapdamage/tests/results/Fragmisincorporation_plot.pdf mapdamage/tests/results/Length_plot.pdf mapdamage/tests/results/Length_plot.pdf rm -f mapdamage/tests/fake1.fasta.fai mapdamage/tests/results/3pGtoA_freq.txt mapdamage/tests/results/5pCtoT_freq.txt mapdamage/tests/results/Runtime_log.txt mapdamage/tests/results/dnacomp.txt mapdamage/tests/results/lgdistribution.txt mapdamage/tests/results/misincorporation.txt mapdamage/tests/test.rescaled.sam make[1]: Leaving directory '/build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-indep dh binary-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py config running config dh_auto_build -i -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage copying mapdamage/seq.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage copying mapdamage/__init__.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage copying mapdamage/rscript.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage copying mapdamage/composition.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage copying mapdamage/parseoptions.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage copying mapdamage/align.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage copying mapdamage/tables.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage copying mapdamage/rescale.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage copying mapdamage/version.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage copying mapdamage/mp_test.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts copying mapdamage/Rscripts/mapDamage.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts copying mapdamage/Rscripts/lengths.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/function.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/data.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/checkLibraries.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/priorPropose.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/postConditonal.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/start.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/runGeneral.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats copying mapdamage/Rscripts/stats/main.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests copying mapdamage/tests/test.bam -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests copying mapdamage/tests/fake1.fasta -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests copying mapdamage/tests/dnacomp.txt -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests copying mapdamage/tests/test.rescaled.correct.sam -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests running build_scripts creating build creating build/scripts-3.8 copying and adjusting bin/mapDamage -> build/scripts-3.8 changing mode of build/scripts-3.8/mapDamage from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg' cd mapdamage && \ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin:/build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/bin \ PYTHONPATH=/build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build \ python3 mp_test.py Started with the command: /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/bin/mapDamage -i tests/test.bam -r tests/fake1.fasta -d tests/results --no-stats [E::idx_find_and_load] Could not retrieve index file for 'tests/test.bam' additional tests/results/Length_plot.pdf generated Successful run Missing the following R libraries 'Rcpp' and 'RcppGSL' The Bayesian estimation has been disabled Reading from 'tests/test.bam' Writing results to 'tests/results/' pdf tests/results/Fragmisincorporation_plot.pdf generated .[E::idx_find_and_load] Could not retrieve index file for 'tests/test.bam' . ---------------------------------------------------------------------- Ran 2 tests in 5.020s OK make[1]: Leaving directory '/build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage running install running build running build_py copying mapdamage/tests/test.rescaled.sam -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests copying mapdamage/tests/fake1.fasta.fai -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests running build_scripts running install_lib creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8 creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/seq.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/__init__.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/rscript.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/composition.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/parseoptions.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/align.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tables.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/tests copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests/test.rescaled.sam -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/tests copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests/test.bam -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/tests copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests/fake1.fasta -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/tests copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests/dnacomp.txt -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/tests copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests/test.rescaled.correct.sam -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/tests copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/tests/fake1.fasta.fai -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/tests copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/rescale.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/__pycache__ copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/__pycache__/parseoptions.cpython-38.pyc -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/__pycache__ copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/__pycache__/seq.cpython-38.pyc -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/__pycache__ copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/__pycache__/__init__.cpython-38.pyc -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/__pycache__ copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/__pycache__/rscript.cpython-38.pyc -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/__pycache__ copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/__pycache__/composition.cpython-38.pyc -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/__pycache__ copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/__pycache__/align.cpython-38.pyc -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/__pycache__ copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/__pycache__/tables.cpython-38.pyc -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/__pycache__ copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/__pycache__/rescale.cpython-38.pyc -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/__pycache__ copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/__pycache__/version.cpython-38.pyc -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/__pycache__ copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/version.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/Rscripts creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/Rscripts/stats copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats/function.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/Rscripts/stats copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats/data.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/Rscripts/stats copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats/checkLibraries.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/Rscripts/stats copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats/priorPropose.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/Rscripts/stats copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats/postConditonal.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/Rscripts/stats copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats/start.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/Rscripts/stats copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats/runGeneral.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/Rscripts/stats copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/stats/main.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/Rscripts/stats copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/mapDamage.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/Rscripts copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/Rscripts/lengths.R -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/Rscripts copying /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.8/build/mapdamage/mp_test.py -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage byte-compiling /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/seq.py to seq.cpython-38.pyc byte-compiling /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/__init__.py to __init__.cpython-38.pyc byte-compiling /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/rscript.py to rscript.cpython-38.pyc byte-compiling /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/composition.py to composition.cpython-38.pyc byte-compiling /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/parseoptions.py to parseoptions.cpython-38.pyc byte-compiling /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/align.py to align.cpython-38.pyc byte-compiling /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/tables.py to tables.cpython-38.pyc byte-compiling /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/rescale.py to rescale.cpython-38.pyc byte-compiling /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/version.py to version.cpython-38.pyc byte-compiling /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage/mp_test.py to mp_test.cpython-38.pyc running install_scripts creating /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/bin copying build/scripts-3.8/mapDamage -> /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/bin changing mode of /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/bin/mapDamage to 755 running install_egg_info Writing /build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg/debian/mapdamage/usr/lib/python3.8/dist-packages/mapdamage-2.2.0.egg-info dh_install -i -O--buildsystem=pybuild dh_installdocs -i -O--buildsystem=pybuild dh_installchangelogs -i -O--buildsystem=pybuild dh_installman -i -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg' dh_python3 --no-ext-rename make[1]: Leaving directory '/build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg' dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg' dh_fixperms find debian -name checkLibraries.R -exec chmod +x \{\} \; find debian -name runGeneral.R -exec chmod +x \{\} \; make[1]: Leaving directory '/build/mapdamage-3LKXgc/mapdamage-2.2.1+dfsg' dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'mapdamage' in '../mapdamage_2.2.1+dfsg-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../mapdamage_2.2.1+dfsg-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/mapdamage-3LKXgc /tmp/mapdamage-2.2.1+dfsg-1kj7t9h6z I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.0Ty3_y3v20... I: success in 406.7266 seconds md5: mapdamage_2.2.1+dfsg-1_all.deb: OK sha1: mapdamage_2.2.1+dfsg-1_all.deb: OK sha256: mapdamage_2.2.1+dfsg-1_all.deb: OK Checksums: OK