Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/macs/macs_2.2.7.1-3+b2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/macs-2.2.7.1-3+b2x8y6ye0m/macs_2.2.7.1-3+b2_amd64.buildinfo Get source package info: macs=2.2.7.1-3 Source URL: http://snapshot.notset.fr/mr/package/macs/2.2.7.1-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 binutils=2.35.1-4 binutils-common=2.35.1-4 binutils-x86-64-linux-gnu=2.35.1-4 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-23 cython3=0.29.21-3 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.3 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.0-23 gcc=4:10.2.0-1 gcc-10=10.2.0-23 gcc-10-base=10.2.0-23 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 help2man=1.47.16 hostname=3.23 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libasan6=10.2.0-23 libatomic1=10.2.0-23 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-4 libblas3=3.9.0-3 libblkid1=2.36.1-2 libbz2-1.0=1.0.8-4 libc-bin=2.31-5 libc-dev-bin=2.31-5 libc6=2.31-5 libc6-dev=2.31-5 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.0-23 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-4 libctf0=2.35.1-4 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.3 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.0-23 libgcc-s1=10.2.0-23 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran5=10.2.0-23 libglib2.0-0=2.66.3-2 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.0-23 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-4 libisl23=0.23-1 libitm1=10.2.0-23 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 liblocale-gettext-perl=1.07-4+b1 liblsan0=10.2.0-23 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-1 libncursesw6=6.2+20201114-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.35-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libprocps8=2:3.3.16-5 libpython3-all-dev=3.9.0-4 libpython3-dev=3.9.0-4 libpython3-stdlib=3.9.0-4 libpython3.8-minimal=3.8.6-1 libpython3.8-stdlib=3.8.6-1 libpython3.9=3.9.1~rc1-2 libpython3.9-dev=3.9.1~rc1-2 libpython3.9-minimal=3.9.1~rc1-2 libpython3.9-stdlib=3.9.1~rc1-2 libquadmath0=10.2.0-23 libreadline8=8.1~rc3-1 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsigsegv2=2.12-2 libsmartcols1=2.36.1-2 libsqlite3-0=3.34.0-1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-23 libstdc++6=10.2.0-23 libsub-override-perl=0.09-2 libsystemd0=247.1-3 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-23 libubsan1=10.2.0-23 libuchardet0=0.0.7-1 libudev1=247.1-3 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libxml2=2.9.10+dfsg-6.3 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 openssl=1.1.1h-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 po-debconf=1.0.21 procps=2:3.3.16-5 python-pip-whl=20.1.1-2 python3=3.9.0-4 python3-all=3.9.0-4 python3-all-dev=3.9.0-4 python3-atomicwrites=1.4.0-1 python3-attr=20.3.0-1 python3-dev=3.9.0-4 python3-distutils=3.8.6-1 python3-importlib-metadata=1.6.0-2 python3-lib2to3=3.8.6-1 python3-minimal=3.9.0-4 python3-more-itertools=4.2.0-3 python3-numpy=1:1.19.4-1 python3-packaging=20.4-1 python3-pip=20.1.1-2 python3-pkg-resources=50.3.0-1 python3-pluggy=0.13.0-5 python3-py=1.9.0-2 python3-pyparsing=2.4.7-1 python3-pytest=4.6.11-1 python3-setuptools=50.3.0-1 python3-six=1.15.0-2 python3-wcwidth=0.1.9+dfsg1-2 python3-wheel=0.34.2-1 python3-zipp=1.0.0-3 python3.8=3.8.6-1 python3.8-minimal=3.8.6-1 python3.9=3.9.1~rc1-2 python3.9-dev=3.9.1~rc1-2 python3.9-minimal=3.9.1~rc1-2 readline-common=8.1~rc3-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020d-1 util-linux=2.36.1-2 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201207T144442Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d macs=2.2.7.1-3 && mkdir -p /build/macs-zJnagv && dpkg-source --no-check -x /*.dsc /build/macs-zJnagv/macs-2.2.7.1 && cd /build/macs-zJnagv/macs-2.2.7.1 && { printf '%s' 'macs (2.2.7.1-3+b2) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.9 only -- all / amd64 / i386 Build Daemon (x86-conova-01) Mon, 07 Dec 2020 14:56:13 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/macs-zJnagv" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/macs-zJnagv/macs-2.2.7.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607352973" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/macs-zJnagv /tmp/macs-2.2.7.1-3+b2x8y6ye0m bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201207T144442Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.n6uvpeJ694 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.n6uvpeJ694 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201207T144442Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201207T144442Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1103 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4614 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201207T144442Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.n6uvpeJ694 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201207T144442Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1138 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.n6uvpeJ694 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d macs=2.2.7.1-3 && mkdir -p /build/macs-zJnagv && dpkg-source --no-check -x /*.dsc /build/macs-zJnagv/macs-2.2.7.1 && cd /build/macs-zJnagv/macs-2.2.7.1 && { printf '%s' 'macs (2.2.7.1-3+b2) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.9 only -- all / amd64 / i386 Build Daemon (x86-conova-01) Mon, 07 Dec 2020 14:56:13 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/macs-zJnagv"' exec /tmp/mmdebstrap.n6uvpeJ694 Reading package lists... NOTICE: 'macs' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/macs.git Please use: git clone https://salsa.debian.org/med-team/macs.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 136 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main macs 2.2.7.1-3 (dsc) [2102 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main macs 2.2.7.1-3 (tar) [135 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main macs 2.2.7.1-3 (diff) [1268 kB] Fetched 136 MB in 1min 49s (1249 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'macs_2.2.7.1-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting macs in /build/macs-zJnagv/macs-2.2.7.1 dpkg-source: info: unpacking macs_2.2.7.1.orig.tar.gz dpkg-source: info: unpacking macs_2.2.7.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying keep_debug dpkg-source: info: applying link-libm.patch dpkg-source: info: applying no-pip.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/macs-zJnagv/macs-2.2.7.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607352973" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.n6uvpeJ694 dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 2.2.7.1-3+b2 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/macs-zJnagv/macs-2.2.7.1' dh_auto_clean || true I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -Rf test/macs2.2.7.1-3+b2* test/speedtest* rm -f debian/*.1 debian/*-man-include make[1]: Leaving directory '/build/macs-zJnagv/macs-2.2.7.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/macs-zJnagv/macs-2.2.7.1' for pyx in $(find MACS2/ -name "*.pyx"); do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgcmp_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/__init__.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/randsample_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgdiff_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/pileup_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/Constants.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgopt_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/OptValidator.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/OutputWriter.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgpeakcall_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/filterdup_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/predictd_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/refinepeak_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgbroadcall_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/cmbreps_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/diffpeak_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/callpeak_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 creating /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO copying MACS2/IO/__init__.py -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO copying MACS2/khash.pxd -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/cPosValCalculation.pxd -> /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 running build_ext cythoning MACS2/Prob.pyx to MACS2/Prob.c cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c cythoning MACS2/Pileup.pyx to MACS2/Pileup.c cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c cythoning MACS2/Signal.pyx to MACS2/Signal.c cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c building 'MACS2.Prob' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/MACS2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Prob.c -o build/temp.linux-x86_64-3.9/MACS2/Prob.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/Prob.o -lm -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Prob.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.Parser' extension creating build/temp.linux-x86_64-3.9/MACS2/IO x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/Parser.c -o build/temp.linux-x86_64-3.9/MACS2/IO/Parser.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/Parser.o -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/Parser.cpython-39-x86_64-linux-gnu.so building 'MACS2.Pileup' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Pileup.c -o build/temp.linux-x86_64-3.9/MACS2/Pileup.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/cPosValCalculation.c -o build/temp.linux-x86_64-3.9/MACS2/cPosValCalculation.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/Pileup.o build/temp.linux-x86_64-3.9/MACS2/cPosValCalculation.o -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Pileup.cpython-39-x86_64-linux-gnu.so building 'MACS2.PeakModel' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/PeakModel.c -o build/temp.linux-x86_64-3.9/MACS2/PeakModel.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/PeakModel.o -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakModel.cpython-39-x86_64-linux-gnu.so building 'MACS2.PeakDetect' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/PeakDetect.c -o build/temp.linux-x86_64-3.9/MACS2/PeakDetect.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/PeakDetect.o -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakDetect.cpython-39-x86_64-linux-gnu.so building 'MACS2.Signal' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Signal.c -o build/temp.linux-x86_64-3.9/MACS2/Signal.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/Signal.o -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Signal.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.PeakIO' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/PeakIO.c -o build/temp.linux-x86_64-3.9/MACS2/IO/PeakIO.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/PeakIO.o -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PeakIO.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.BedGraphIO' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-x86_64-3.9/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/BedGraphIO.o -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraphIO.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.FixWidthTrack' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-x86_64-3.9/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/FixWidthTrack.o -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/FixWidthTrack.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.PairedEndTrack' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-x86_64-3.9/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/PairedEndTrack.o -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PairedEndTrack.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.BedGraph' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/BedGraph.c -o build/temp.linux-x86_64-3.9/MACS2/IO/BedGraph.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/BedGraph.o -lm -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraph.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.ScoreTrack' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-x86_64-3.9/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/ScoreTrack.o -lm -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/ScoreTrack.cpython-39-x86_64-linux-gnu.so building 'MACS2.IO.CallPeakUnit' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-x86_64-3.9/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/macs-zJnagv/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/MACS2/IO/CallPeakUnit.o -lm -o /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/CallPeakUnit.cpython-39-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting bin/macs2 -> build/scripts-3.9 changing mode of build/scripts-3.9/macs2 from 644 to 755 PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \ --no-discard-stderr --no-info \ --name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs2" > debian/macs2.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs2_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \ --no-discard-stderr --no-info --version-string="2.2.7.1" \ --include debian/macs2_${subcommand}-man-include \ "python3 bin/macs2 ${subcommand}" > \ debian/macs2_${subcommand}.1; done make[1]: Leaving directory '/build/macs-zJnagv/macs-2.2.7.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/macs-zJnagv/macs-2.2.7.1' dh_auto_test I: pybuild base:232: cd /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build; python3.9 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.9.1rc1, pytest-4.6.11, py-1.9.0, pluggy-0.13.0 rootdir: /build/macs-zJnagv/macs-2.2.7.1 collected 42 items test/test_BedGraph.py .... [ 9%] test/test_FixWidthTrack.py .... [ 19%] test/test_PairedEndTrack.py .... [ 28%] test/test_Parser.py ... [ 35%] test/test_PeakIO.py ... [ 42%] test/test_Pileup.py .. [ 47%] test/test_Prob.py ................ [ 85%] test/test_ScoreTrack.py .... [ 95%] test/test_Signal.py s. [100%] ===================== 41 passed, 1 skipped in 1.32 seconds ===================== cd test && for PY3VER in 3.9; do \ export PATH=/build/macs-zJnagv/macs-2.2.7.1/build/scripts-${PY3VER}:$PATH \ && export PYTHONPATH=/build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_${PY3VER}_MACS2/build \ && ./cmdlinetest macs2.2.7.1-3+b2-${PY3VER} ; done 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. 50k contigs with buffersize 13.1 callpeak 13.2 filterdup 13.3 pileup 13.4 randsample 14. search for errors or warnings in log files checking macs2.2.7.1-3+b2-3.9_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_50kcontigs/run_randsample.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_bdgcmp/run_bdgcmp.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_bdgopt/run_bdgopt_max.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_bdgopt/run_bdgopt_min.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_cmbreps/run_cmbreps_max.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_cmbreps/run_cmbreps_mean.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_filterdup/run_filterdup.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_filterdup/run_filterdup_d.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_filterdup/run_filterdup_pe.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_filterdup/run_filterdup_pe_d.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_predictd/run_predictd.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_randsample/run_randsample.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_randsample/run_randsample_bampe.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_randsample/run_randsample_bedpe.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking macs2.2.7.1-3+b2-3.9_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 15. compare with standard outputs 14.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... ... success! 14.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... ... success! 14.1.3 checking 50kcontigs run_filterdup_result.bed ... ... success! 14.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... ... success! 14.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... ... success! 14.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... ... success! 14.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... ... success! 14.4.1 checking bdgdiff common.bed ... ... success! 14.4.2 checking bdgdiff cond1.bed ... ... success! 14.4.3 checking bdgdiff cond2.bed ... ... success! 14.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... ... success! 14.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... ... success! 14.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... ... success! 14.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... ... success! 14.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... ... success! 14.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... ... success! 14.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... ... success! 14.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... ... success! 14.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... ... success! 14.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... ... success! 14.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... ... success! 14.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... ... success! 14.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... ... success! 14.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... ... success! 14.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... ... success! 14.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... ... success! 14.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... ... success! 14.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... ... success! 14.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... ... success! 14.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... ... success! 14.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... ... success! 14.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... ... success! 14.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... ... success! 14.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... ... success! 14.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... ... success! 14.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... ... success! 14.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... ... success! 14.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... ... success! 14.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... ... success! 14.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... ... success! 14.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... ... success! 14.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... ... success! 14.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... ... success! 14.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... ... success! 14.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... ... success! 14.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... ... success! 14.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... ... success! 14.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... ... success! 14.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... ... success! 14.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... ... success! 14.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... ... success! 14.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... ... success! 14.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... ... success! 14.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... ... success! 14.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... ... success! 14.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... ... success! 14.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... ... success! 14.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... ... success! 14.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... ... success! 14.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... ... success! 14.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... ... success! 14.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... ... success! 14.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... ... success! 14.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... ... success! 14.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... ... success! 14.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... ... success! 14.11.1 checking cmbreps run_cmbreps_fisher.bdg ... ... success! 14.11.2 checking cmbreps run_cmbreps_max.bdg ... ... success! 14.11.3 checking cmbreps run_cmbreps_mean.bdg ... ... success! 14.12.1 checking filterdup run_filterdup_result.bed ... ... success! 14.12.2 checking filterdup run_filterdup_result_pe.bedpe ... ... success! 14.13.1 checking pileup run_pileup_CTRL.bed.bdg ... ... success! 14.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... ... success! 14.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... ... success! 14.13.4 checking pileup run_pileup_ChIP.bed.bdg ... ... success! 14.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... ... success! 14.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... ... success! 14.14.1 checking refinepeak run_refinepeak_w_ofile.bed ... ... success! 14.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... ... success! 14.15.1 checking bdgopt run_bdgopt_max.bdg ... ... success! 14.15.2 checking bdgopt run_bdgopt_min.bdg ... ... success! 16. brief speed test CPU time (mm:ss): 00:02:05 Max mem (KB): 285456 make[1]: Leaving directory '/build/macs-zJnagv/macs-2.2.7.1' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/macs-zJnagv/macs-2.2.7.1/debian/macs running install running build running build_py running build_ext skipping 'MACS2/Prob.c' Cython extension (up-to-date) skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date) skipping 'MACS2/Pileup.c' Cython extension (up-to-date) skipping 'MACS2/PeakModel.c' Cython extension (up-to-date) skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date) skipping 'MACS2/Signal.c' Cython extension (up-to-date) skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date) skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr creating /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib creating /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9 creating /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages creating /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Prob.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/khash.pxd -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgcmp_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/cPosValCalculation.pxd -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__init__.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Signal.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/randsample_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgdiff_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakDetect.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/pileup_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakModel.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Constants.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgopt_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/OptValidator.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/OutputWriter.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/filterdup_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/predictd_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/refinepeak_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/cmbreps_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 creating /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/Parser.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraph.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/__init__.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraphIO.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PeakIO.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/CallPeakUnit.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/ScoreTrack.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PairedEndTrack.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO creating /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/__pycache__/__init__.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/FixWidthTrack.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO creating /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgopt_cmd.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/OutputWriter.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/refinepeak_cmd.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/Constants.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/cmbreps_cmd.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgbroadcall_cmd.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/randsample_cmd.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/filterdup_cmd.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/OptValidator.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgcmp_cmd.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/predictd_cmd.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/__init__.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/pileup_cmd.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgdiff_cmd.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/callpeak_cmd.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgpeakcall_cmd.cpython-39.pyc -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/diffpeak_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/callpeak_cmd.py -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/macs-zJnagv/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Pileup.cpython-39-x86_64-linux-gnu.so -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__init__.py to __init__.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/Constants.py to Constants.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/OptValidator.py to OptValidator.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/OutputWriter.py to OutputWriter.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.cpython-39.pyc byte-compiling /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.cpython-39.pyc running install_egg_info running egg_info creating MACS2.egg-info writing MACS2.egg-info/PKG-INFO writing dependency_links to MACS2.egg-info/dependency_links.txt writing requirements to MACS2.egg-info/requires.txt writing top-level names to MACS2.egg-info/top_level.txt writing manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.gitignore' warning: no previously-included files found matching '.travis.yml' no previously-included directories found matching '.github' no previously-included directories found matching 'DOCKER' writing manifest file 'MACS2.egg-info/SOURCES.txt' Copying MACS2.egg-info to /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2-2.2.7.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/bin copying build/scripts-3.9/macs2 -> /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/bin changing mode of /build/macs-zJnagv/macs-2.2.7.1/debian/macs/usr/bin/macs2 to 755 dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild dh_strip -a -a -O--buildsystem=pybuild dh_makeshlibs -a -a -O--buildsystem=pybuild dh_shlibdeps -a -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.2.7.1-3+b2_amd64.deb'. dpkg-deb: building package 'macs' in '../macs_2.2.7.1-3+b2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../macs_2.2.7.1-3+b2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/macs-zJnagv /tmp/macs-2.2.7.1-3+b2x8y6ye0m I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.n6uvpeJ694... I: success in 1664.2624 seconds md5: Value of 'md5' differs for macs-dbgsym_2.2.7.1-3+b2_amd64.deb md5: Size differs for macs-dbgsym_2.2.7.1-3+b2_amd64.deb md5: Value of 'md5' differs for macs_2.2.7.1-3+b2_amd64.deb md5: Size differs for macs_2.2.7.1-3+b2_amd64.deb sha1: Value of 'sha1' differs for macs-dbgsym_2.2.7.1-3+b2_amd64.deb sha1: Size differs for macs-dbgsym_2.2.7.1-3+b2_amd64.deb sha1: Value of 'sha1' differs for macs_2.2.7.1-3+b2_amd64.deb sha1: Size differs for macs_2.2.7.1-3+b2_amd64.deb sha256: Value of 'sha256' differs for macs-dbgsym_2.2.7.1-3+b2_amd64.deb sha256: Size differs for macs-dbgsym_2.2.7.1-3+b2_amd64.deb sha256: Value of 'sha256' differs for macs_2.2.7.1-3+b2_amd64.deb sha256: Size differs for macs_2.2.7.1-3+b2_amd64.deb Checksums: FAIL Cannot generate diffoscope for macs-dbgsym_2.2.7.1-3+b2_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/79d0cf2a388cfce82802633fb6af0058bc38f6d0f2a4db0bd847fcec3fbddb00/download diffoscope run passed