Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/m/macromoleculebuilder/macromoleculebuilder_3.5+dfsg-5_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/macromoleculebuilder-3.5+dfsg-5wnvc5psb/macromoleculebuilder_3.5+dfsg-5_all.buildinfo Get source package info: macromoleculebuilder=3.5+dfsg-5 Source URL: http://snapshot.notset.fr/mr/package/macromoleculebuilder/3.5+dfsg-5/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=asciidoc-base=10.1.4-1 asciidoc-common=10.1.4-1 autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.38-3 binutils-common=2.38-3 binutils-x86-64-linux-gnu=2.38-3 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 cmake=3.23.0-1 cmake-data=3.23.0-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-19 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 docbook-xml=4.5-11 docbook-xsl=1.79.2+dfsg-1 dpkg=1.21.4 dpkg-dev=1.21.4 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-3 findutils=4.9.0-2 freeglut3=2.8.1-6 freeglut3-dev=2.8.1-6 g++=4:11.2.0-2 g++-11=11.2.0-19 gcc=4:11.2.0-2 gcc-11=11.2.0-19 gcc-11-base=11.2.0-19 gcc-12-base=12-20220319-1 gemmi-dev=0.5.3+ds-2 gettext=0.21-6 gettext-base=0.21-6 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libarchive13=3.6.0-1 libasan6=11.2.0-19 libatomic1=12-20220319-1 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libbinutils=2.38-3 libblas-dev=3.10.0-2 libblas3=3.10.0-2 libblkid1=2.37.3-1+b1 libbrotli1=1.0.9-2+b3 libbsd0=0.11.5-1+b1 libbz2-1.0=1.0.8-5 libc-bin=2.33-7 libc-dev-bin=2.33-7 libc6=2.33-7 libc6-dev=2.33-7 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=12-20220319-1 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-3 libctf0=2.38-3 libcurl4=7.82.0-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdpkg-perl=1.21.4 libdrm-amdgpu1=2.4.110-1 libdrm-common=2.4.110-1 libdrm-intel1=2.4.110-1 libdrm-nouveau2=2.4.110-1 libdrm-radeon1=2.4.110-1 libdrm2=2.4.110-1 libedit2=3.1-20210910-1 libegl-dev=1.4.0-1 libegl-mesa0=21.3.7-1 libegl1=1.4.0-1 libelf1=0.186-1 libexpat1=2.4.8-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libgbm1=21.3.7-1 libgcc-11-dev=11.2.0-19 libgcc-s1=12-20220319-1 libgcrypt20=1.9.4-5 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgfortran5=12-20220319-1 libgl-dev=1.4.0-1 libgl1=1.4.0-1 libgl1-mesa-dev=21.3.7-1 libgl1-mesa-dri=21.3.7-1 libglapi-mesa=21.3.7-1 libgles-dev=1.4.0-1 libgles1=1.4.0-1 libgles2=1.4.0-1 libglu1-mesa=9.0.2-1 libglu1-mesa-dev=9.0.2-1 libglvnd-core-dev=1.4.0-1 libglvnd-dev=1.4.0-1 libglvnd0=1.4.0-1 libglx-dev=1.4.0-1 libglx-mesa0=21.3.7-1 libglx0=1.4.0-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.3-4+b1 libgomp1=12-20220319-1 libgpg-error0=1.43-3 libgssapi-krb5-2=1.19.2-2+b1 libhogweed6=3.7.3-1 libice-dev=2:1.0.10-1 libice6=2:1.0.10-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=12-20220319-1 libjsoncpp25=1.9.5-4 libk5crypto3=1.19.2-2+b1 libkeyutils1=1.6.1-3 libkrb5-3=1.19.2-2+b1 libkrb5support0=1.19.2-2+b1 liblapack-dev=3.10.0-2 liblapack3=3.10.0-2 libldap-2.5-0=2.5.11+dfsg-1 libllvm13=1:13.0.1-3+b2 liblsan0=12-20220319-1 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-3 libmagic1=1:5.41-3 libmd0=1.0.4-1 libmount1=2.37.3-1+b1 libmpc3=1.2.1-2 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.3-2 libncursesw6=6.3-2 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopengl-dev=1.4.0-1 libopengl0=1.4.0-1 libopenmm-dev=7.7.0+dfsg-4+b1 libopenmm7.7=7.7.0+dfsg-4+b1 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpciaccess0=0.16-3 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.34=5.34.0-3 libpipeline1=1.5.5-1 libprocps8=2:3.3.17-7+b1 libpsl5=0.21.0-1.2 libpthread-stubs0-dev=0.4-1 libpython3-stdlib=3.10.4-1 libpython3.10-minimal=3.10.4-1 libpython3.10-stdlib=3.10.4-1 libquadmath0=12-20220319-1 libreadline8=8.1.2-1 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.28+dfsg-2+b1 libsasl2-modules-db=2.1.28+dfsg-2+b1 libseccomp2=2.5.3-2 libselinux1=3.3-1+b2 libsensors-config=1:3.6.0-7 libsensors5=1:3.6.0-7 libseqan2-dev=2.4.0+dfsg-14 libsigsegv2=2.14-1 libsimbody-dev=3.6.1+dfsg-7 libsimbody3.6=3.6.1+dfsg-7 libsimtkmolmodel-dev=3.0.113.gd05a5b6-1 libsimtkmolmodel3.0=3.0.113.gd05a5b6-1 libsm-dev=2:1.2.3-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.3-1+b1 libsqlite3-0=3.38.2-1 libssh2-1=1.10.0-3 libssl1.1=1.1.1n-1 libstb-dev=0.0~git20210910.af1a5bc+ds-1+b1 libstb0=0.0~git20210910.af1a5bc+ds-1+b1 libstdc++-11-dev=11.2.0-19 libstdc++6=12-20220319-1 libsub-override-perl=0.09-2 libsystemd0=250.4-1 libtasn1-6=4.18.0-4 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-2 libtsan0=11.2.0-19 libubsan1=12-20220319-1 libuchardet0=0.0.7-1 libudev1=250.4-1 libunistring2=1.0-1 libuuid1=2.37.3-1+b1 libuv1=1.44.1-2 libvulkan1=1.3.204.1-2 libwayland-client0=1.20.0-1 libwayland-server0=1.20.0-1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libx11-dev=2:1.7.2-2+b1 libx11-xcb1=2:1.7.2-2+b1 libxau-dev=1:1.0.9-1 libxau6=1:1.0.9-1 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-present0=1.14-3 libxcb-shm0=1.14-3 libxcb-sync1=1.14-3 libxcb-xfixes0=1.14-3 libxcb1=1.14-3 libxcb1-dev=1.14-3 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext-dev=2:1.3.4-1 libxext6=2:1.3.4-1 libxfixes-dev=1:6.0.0-1 libxfixes3=1:6.0.0-1 libxi-dev=2:1.8-1 libxi6=2:1.8-1 libxml2=2.9.13+dfsg-1 libxml2-utils=2.9.13+dfsg-1 libxmu-dev=2:1.1.3-3 libxmu-headers=2:1.1.3-3 libxmu6=2:1.1.3-3 libxshmfence1=1.3-1 libxslt1.1=1.1.34-4 libxt-dev=1:1.2.1-1 libxt6=1:1.2.1-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.12-1+b1 libzstd1=1.4.9+dfsg-1 linux-libc-dev=5.16.14-1 login=1:4.11.1+dfsg1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3+b1 media-types=7.0.0 ncurses-base=6.3-2 ncurses-bin=6.3-2 patch=2.7.6-7 perl=5.34.0-3 perl-base=5.34.0-3 perl-modules-5.34=5.34.0-3 po-debconf=1.0.21+nmu1 procps=2:3.3.17-7+b1 python3=3.10.4-1 python3-minimal=3.10.4-1 python3.10=3.10.4-1 python3.10-minimal=3.10.4-1 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sgml-base=1.30 sgml-data=2.0.11+nmu1 sysvinit-utils=3.01-1 tao-pegtl-dev=2.8.3-3 tar=1.34+dfsg-1 util-linux=2.37.3-1+b1 x11-common=1:7.7+23 x11proto-dev=2021.5-1 xml-core=0.18+nmu1 xorg-sgml-doctools=1:1.11-1.1 xsltproc=1.1.34-4 xtrans-dev=1.4.0-1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220404T152929Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220404T152929Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220402T210321Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220328T210210Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d macromoleculebuilder=3.5+dfsg-5 && mkdir -p /build/macromoleculebuilder-9uJHIF && dpkg-source --no-check -x /*.dsc /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg && chown -R builduser:builduser /build/macromoleculebuilder-9uJHIF" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1648636646" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/macromoleculebuilder-9uJHIF /tmp/macromoleculebuilder-3.5+dfsg-5wnvc5psb bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220328T210210Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.oFM2d_Tk_0 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.oFM2d_Tk_0 Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220328T210210Z unstable/main amd64 libfakeroot amd64 1.28-1 [48.2 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220328T210210Z unstable/main amd64 fakeroot amd64 1.28-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (1050 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4702 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.28-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.28-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.28-1_amd64.deb ... Unpacking fakeroot (1.28-1) ... Setting up libfakeroot:amd64 (1.28-1) ... Setting up fakeroot (1.28-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220404T152929Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220404T152929Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220402T210321Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220328T210210Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.oFM2d_Tk_0 Get:1 http://snapshot.notset.fr/archive/debian/20220404T152929Z bookworm InRelease [130 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220402T210321Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220328T210210Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220404T152929Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220404T152929Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220404T152929Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220404T152929Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220404T152929Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220404T152929Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220404T152929Z bookworm/main Sources [11.9 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220404T152929Z bookworm/main amd64 Packages [11.3 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220402T210321Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220402T210321Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220402T210321Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220402T210321Z unstable/main amd64 Packages [12.4 MB] Fetched 35.9 MB in 29s (1243 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.oFM2d_Tk_0 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d macromoleculebuilder=3.5+dfsg-5 && mkdir -p /build/macromoleculebuilder-9uJHIF && dpkg-source --no-check -x /*.dsc /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg && chown -R builduser:builduser /build/macromoleculebuilder-9uJHIF"' exec /tmp/mmdebstrap.oFM2d_Tk_0 Reading package lists... NOTICE: 'macromoleculebuilder' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/macromoleculebuilder.git Please use: git clone https://salsa.debian.org/debichem-team/macromoleculebuilder.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3528 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220404T152929Z bookworm/main macromoleculebuilder 3.5+dfsg-5 (dsc) [2409 B] Get:2 http://snapshot.notset.fr/archive/debian/20220404T152929Z bookworm/main macromoleculebuilder 3.5+dfsg-5 (tar) [3521 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220404T152929Z bookworm/main macromoleculebuilder 3.5+dfsg-5 (diff) [4224 B] Fetched 3528 kB in 3s (1259 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'macromoleculebuilder_3.5+dfsg-5.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting macromoleculebuilder in /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg dpkg-source: info: unpacking macromoleculebuilder_3.5+dfsg.orig.tar.xz dpkg-source: info: unpacking macromoleculebuilder_3.5+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-Lepton-path.patch dpkg-source: info: applying fix-Gemmi-compatibility.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1648636646" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.oFM2d_Tk_0 dpkg-buildpackage: info: source package macromoleculebuilder dpkg-buildpackage: info: source version 3.5+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary-indep dh binary-indep dh_update_autotools_config -i dh_autoreconf -i debian/rules override_dh_auto_configure make[1]: Entering directory '/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg' dh_auto_configure -- \ -DCMAKE_BUILD_TYPE=Release \ -DOpenMM_INCLUDE_DIR=/usr/include \ -DSimTKmolmodel=/usr \ -DCMAKE_CXX_FLAGS="-D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O0" cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release -DOpenMM_INCLUDE_DIR=/usr/include -DSimTKmolmodel=/usr "-DCMAKE_CXX_FLAGS=-D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O0" .. CMake Deprecation Warning at CMakeLists.txt:7 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 11.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg' dh_auto_build -i cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg -B/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/MMBlib.dir/build.make CMakeFiles/MMBlib.dir/depend make[3]: Entering directory '/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu' cd /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu/CMakeFiles/MMBlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/MMBlib.dir/build.make CMakeFiles/MMBlib.dir/build make[3]: Entering directory '/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu' [ 2%] Building CXX object CMakeFiles/MMBlib.dir/src/Utils.cpp.o /usr/bin/c++ -DBuildNtC -DLEPTON_BUILDING_STATIC_LIBRARY 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-std=c++14 -MD -MT CMakeFiles/MMBlib.dir/src/DisplacementContainer.cpp.o -MF CMakeFiles/MMBlib.dir/src/DisplacementContainer.cpp.o.d -o CMakeFiles/MMBlib.dir/src/DisplacementContainer.cpp.o -c /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/src/DisplacementContainer.cpp /usr/bin/c++ -DBuildNtC -DLEPTON_BUILDING_STATIC_LIBRARY -DLepton_USAGE -DMMBlib_EXPORTS -DUSE_MMB_CONSTEXPR -DUSE_OPENMM -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/include -isystem /usr/include/simbody -isystem /usr/include/openmm -isystem /usr/include/openmm/reference -isystem /include -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/3rdparty/Lepton1.3/include -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -O3 -DNDEBUG -fPIC -DMMB_BUILDING_SHARED_LIBRARY -std=c++14 -MD -MT 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-fPIC -DMMB_BUILDING_SHARED_LIBRARY -std=c++14 -MD -MT CMakeFiles/MMBlib.dir/src/MonoAtoms.cpp.o -MF CMakeFiles/MMBlib.dir/src/MonoAtoms.cpp.o.d -o CMakeFiles/MMBlib.dir/src/MonoAtoms.cpp.o -c /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/src/MonoAtoms.cpp [ 36%] Building CXX object CMakeFiles/MMBlib.dir/src/Spiral.cpp.o /usr/bin/c++ -DBuildNtC -DLEPTON_BUILDING_STATIC_LIBRARY -DLepton_USAGE -DMMBlib_EXPORTS -DUSE_MMB_CONSTEXPR -DUSE_OPENMM -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/include -isystem /usr/include/simbody -isystem /usr/include/openmm -isystem /usr/include/openmm/reference -isystem /include -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/3rdparty/Lepton1.3/include -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -O3 -DNDEBUG -fPIC -DMMB_BUILDING_SHARED_LIBRARY -std=c++14 -MD -MT CMakeFiles/MMBlib.dir/src/Spiral.cpp.o -MF CMakeFiles/MMBlib.dir/src/Spiral.cpp.o.d -o CMakeFiles/MMBlib.dir/src/Spiral.cpp.o -c /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/src/Spiral.cpp [ 39%] Building CXX object CMakeFiles/MMBlib.dir/src/ParameterReader.cpp.o /usr/bin/c++ -DBuildNtC -DLEPTON_BUILDING_STATIC_LIBRARY -DLepton_USAGE -DMMBlib_EXPORTS -DUSE_MMB_CONSTEXPR -DUSE_OPENMM -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/include -isystem /usr/include/simbody -isystem /usr/include/openmm -isystem /usr/include/openmm/reference -isystem /include -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/3rdparty/Lepton1.3/include -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -O3 -DNDEBUG -fPIC -DMMB_BUILDING_SHARED_LIBRARY -std=c++14 -MD -MT CMakeFiles/MMBlib.dir/src/ParameterReader.cpp.o -MF CMakeFiles/MMBlib.dir/src/ParameterReader.cpp.o.d -o CMakeFiles/MMBlib.dir/src/ParameterReader.cpp.o -c /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/src/ParameterReader.cpp [ 42%] Building CXX object CMakeFiles/MMBlib.dir/src/BaseInteractionParameterReader.cpp.o /usr/bin/c++ -DBuildNtC -DLEPTON_BUILDING_STATIC_LIBRARY -DLepton_USAGE -DMMBlib_EXPORTS -DUSE_MMB_CONSTEXPR -DUSE_OPENMM -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/include -isystem /usr/include/simbody -isystem /usr/include/openmm -isystem /usr/include/openmm/reference -isystem /include -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/3rdparty/Lepton1.3/include -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -O3 -DNDEBUG -fPIC -DMMB_BUILDING_SHARED_LIBRARY -std=c++14 -MD -MT CMakeFiles/MMBlib.dir/src/BaseInteractionParameterReader.cpp.o -MF CMakeFiles/MMBlib.dir/src/BaseInteractionParameterReader.cpp.o.d -o CMakeFiles/MMBlib.dir/src/BaseInteractionParameterReader.cpp.o -c /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/src/BaseInteractionParameterReader.cpp [ 44%] Building CXX object CMakeFiles/MMBlib.dir/src/TetherForce.cpp.o /usr/bin/c++ -DBuildNtC -DLEPTON_BUILDING_STATIC_LIBRARY -DLepton_USAGE -DMMBlib_EXPORTS -DUSE_MMB_CONSTEXPR -DUSE_OPENMM -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/include -isystem /usr/include/simbody -isystem /usr/include/openmm -isystem /usr/include/openmm/reference -isystem /include -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/3rdparty/Lepton1.3/include -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -O3 -DNDEBUG -fPIC -DMMB_BUILDING_SHARED_LIBRARY -std=c++14 -MD -MT CMakeFiles/MMBlib.dir/src/TetherForce.cpp.o -MF CMakeFiles/MMBlib.dir/src/TetherForce.cpp.o.d -o CMakeFiles/MMBlib.dir/src/TetherForce.cpp.o -c /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/src/TetherForce.cpp [ 47%] Building CXX object CMakeFiles/MMBlib.dir/src/BiopolymerClassTwoTransformForces.cpp.o /usr/bin/c++ -DBuildNtC -DLEPTON_BUILDING_STATIC_LIBRARY -DLepton_USAGE -DMMBlib_EXPORTS -DUSE_MMB_CONSTEXPR -DUSE_OPENMM -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/include -isystem /usr/include/simbody -isystem /usr/include/openmm -isystem /usr/include/openmm/reference -isystem /include -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/3rdparty/Lepton1.3/include -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -O3 -DNDEBUG -fPIC -DMMB_BUILDING_SHARED_LIBRARY -std=c++14 -MD -MT CMakeFiles/MMBlib.dir/src/BiopolymerClassTwoTransformForces.cpp.o -MF CMakeFiles/MMBlib.dir/src/BiopolymerClassTwoTransformForces.cpp.o.d -o CMakeFiles/MMBlib.dir/src/BiopolymerClassTwoTransformForces.cpp.o -c /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/src/BiopolymerClassTwoTransformForces.cpp [ 50%] Building CXX object CMakeFiles/MMBlib.dir/src/WaterDroplet.cpp.o /usr/bin/c++ -DBuildNtC -DLEPTON_BUILDING_STATIC_LIBRARY -DLepton_USAGE -DMMBlib_EXPORTS -DUSE_MMB_CONSTEXPR -DUSE_OPENMM -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/include -isystem /usr/include/simbody -isystem /usr/include/openmm -isystem /usr/include/openmm/reference -isystem /include -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/3rdparty/Lepton1.3/include -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -O3 -DNDEBUG -fPIC -DMMB_BUILDING_SHARED_LIBRARY -std=c++14 -MD -MT CMakeFiles/MMBlib.dir/src/WaterDroplet.cpp.o -MF CMakeFiles/MMBlib.dir/src/WaterDroplet.cpp.o.d -o CMakeFiles/MMBlib.dir/src/WaterDroplet.cpp.o -c /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/src/WaterDroplet.cpp [ 52%] Building CXX object CMakeFiles/MMBlib.dir/src/DensityMap.cpp.o /usr/bin/c++ -DBuildNtC -DLEPTON_BUILDING_STATIC_LIBRARY -DLepton_USAGE -DMMBlib_EXPORTS -DUSE_MMB_CONSTEXPR -DUSE_OPENMM -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/include -isystem /usr/include/simbody -isystem /usr/include/openmm -isystem /usr/include/openmm/reference -isystem /include -isystem /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/3rdparty/Lepton1.3/include -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -O3 -DNDEBUG -fPIC -DMMB_BUILDING_SHARED_LIBRARY -std=c++14 -MD -MT CMakeFiles/MMBlib.dir/src/DensityMap.cpp.o -MF CMakeFiles/MMBlib.dir/src/DensityMap.cpp.o.d -o CMakeFiles/MMBlib.dir/src/DensityMap.cpp.o -c /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/src/DensityMap.cpp c++: fatal error: Killed signal terminated program cc1plus compilation terminated. make[3]: *** [CMakeFiles/MMBlib.dir/build.make:93: CMakeFiles/MMBlib.dir/src/BiopolymerClass.cpp.o] Error 1 make[3]: *** Waiting for unfinished jobs.... make[3]: Leaving directory '/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:88: CMakeFiles/MMBlib.dir/all] Error 2 make[2]: Leaving directory '/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu' make[1]: *** [Makefile:139: all] Error 2 make[1]: Leaving directory '/build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg/obj-x86_64-linux-gnu' dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make: *** [debian/rules:9: binary-indep] Error 25 dpkg-buildpackage: error: debian/rules binary-indep subprocess returned exit status 2 E: run_chroot failed: E: command failed: chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/macromoleculebuilder-9uJHIF/macromoleculebuilder-3.5+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1648636646" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" W: listening on child socket failed: I: removing tempdir /tmp/mmdebstrap.oFM2d_Tk_0... E: mmdebstrap failed to run mmdebstrap failed