Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/l/lmfit-py/lmfit-py_1.0.2-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/lmfit-py-1.0.2-13zba_y9u/lmfit-py_1.0.2-1_all.buildinfo Get source package info: lmfit-py=1.0.2-1 Source URL: http://snapshot.notset.fr/mr/package/lmfit-py/1.0.2-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.4-1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.51 bash=5.1-3+b1 binutils=2.37-5 binutils-common=2.37-5 binutils-x86-64-linux-gnu=2.37-5 bsdextrautils=2.37.2-1 bsdutils=1:2.37.2-1 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20210119 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.3.0-8 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.1 debianutils=5.4-3 dh-autoreconf=20 dh-python=4.20201102+nmu1 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 docutils-common=0.16+dfsg-4 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 fonts-lyx=2.3.6-1 g++=4:10.2.1-1 g++-10=10.3.0-8 gcc=4:10.2.1-1 gcc-10=10.3.0-8 gcc-10-base=10.3.0-8 gcc-11-base=11.2.0-4 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-6 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-4 libatomic1=11.2.0-4 libattr1=1:2.5.1-1 libaudit-common=1:3.0.5-1 libaudit1=1:3.0.5-1 libbinutils=2.37-5 libblas3=3.10.0-1 libblkid1=2.37.2-1 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-17 libc-dev-bin=2.31-17 libc6=2.31-17 libc6-dev=2.31-17 libcap-ng0=0.7.9-2.2+b1 libcc1-0=11.2.0-4 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-1 libcrypt1=1:4.4.25-1 libctf-nobfd0=2.37-5 libctf0=2.37-5 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.1 libdeflate0=1.7-2 libdpkg-perl=1.20.9 libelf1=0.185-2 libexpat1=2.2.10-2 libffi7=3.3-6 libfile-stripnondeterminism-perl=1.12.0-1 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.3.0-8 libgcc-s1=11.2.0-4 libgcrypt20=1.8.7-6 libgdbm-compat4=1.20-1 libgdbm6=1.20-1 libgfortran5=11.2.0-4 libgmp10=2:6.2.1+dfsg-1 libgomp1=11.2.0-4 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libicu67=67.1-7 libimagequant0=2.12.2-1.1 libisl23=0.23-1 libitm1=11.2.0-4 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.6-4 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui=1.12.1+dfsg-8 libjs-sphinxdoc=3.5.4-2 libjs-underscore=1.9.1~dfsg-3 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-1 liblbfgsb0=3.0+dfsg.3-9 liblcms2-2=2.12~rc1-2 liblsan0=11.2.0-4 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-3 libmount1=2.37.2-1 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-4 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-5 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libpython3-stdlib=3.9.2-3 libpython3.9-minimal=3.9.7-2 libpython3.9-stdlib=3.9.7-2 libquadmath0=11.2.0-4 libreadline8=8.1-2 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.37.2-1 libsqlite3-0=3.36.0-2 libssl1.1=1.1.1l-1 libstdc++-10-dev=10.3.0-8 libstdc++6=11.2.0-4 libsub-override-perl=0.09-2 libsystemd0=247.9-1 libtiff5=4.2.0-1 libtinfo6=6.2+20201114-4 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-4 libubsan1=11.2.0-4 libuchardet0=0.0.7-1 libudev1=247.9-1 libunistring2=0.9.10-6 libuuid1=2.37.2-1 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxml2=2.9.12+dfsg-3 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.46-4 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.70 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncurses-base=6.2+20201114-4 ncurses-bin=6.2+20201114-4 openssl=1.1.1l-1 patch=2.7.6-7 perl=5.32.1-5 perl-base=5.32.1-5 perl-modules-5.32=5.32.1-5 po-debconf=1.0.21+nmu1 python-babel-localedata=2.8.0+dfsg.1-7 python-matplotlib-data=3.3.4-1 python3=3.9.2-3 python3-alabaster=0.7.12-1 python3-all=3.9.2-3 python3-asteval=0.9.25-2 python3-attr=20.3.0-1 python3-babel=2.8.0+dfsg.1-7 python3-backcall=0.2.0-2 python3-certifi=2020.6.20-1 python3-chardet=4.0.0-1 python3-cycler=0.10.0-3 python3-dateutil=2.8.1-6 python3-decorator=4.4.2-2 python3-distutils=3.9.7-1 python3-docutils=0.16+dfsg-4 python3-future=0.18.2-5 python3-idna=2.10-1 python3-imagesize=1.2.0-2 python3-importlib-metadata=4.6.4-1 python3-iniconfig=1.1.1-1 python3-ipython=7.22.0-1 python3-ipython-genutils=0.2.0-4 python3-jedi=0.18.0-1 python3-jinja2=2.11.3-1 python3-kiwisolver=1.3.1-1+b1 python3-lib2to3=3.9.7-1 python3-markupsafe=1.1.1-1+b3 python3-matplotlib=3.3.4-1 python3-minimal=3.9.2-3 python3-more-itertools=4.2.0-3 python3-mpmath=1.2.1-1 python3-numpy=1:1.19.5-1 python3-packaging=20.9-2 python3-pandas=1.1.5+dfsg-2 python3-pandas-lib=1.1.5+dfsg-2 python3-parso=0.8.1-1 python3-pexpect=4.8.0-2 python3-pickleshare=0.7.5-4 python3-pil=8.1.2+dfsg-0.3 python3-pkg-resources=52.0.0-4 python3-pluggy=0.13.0-7 python3-prompt-toolkit=3.0.20-1 python3-ptyprocess=0.7.0-2 python3-py=1.10.0-1 python3-pygments=2.7.1+dfsg-2.1 python3-pyparsing=2.4.7-1 python3-pytest=6.0.2-2 python3-requests=2.25.1+dfsg-2 python3-roman=2.0.0-5 python3-scipy=1.7.1-1 python3-setuptools=52.0.0-4 python3-six=1.16.0-2 python3-snowballstemmer=2.1.0-1 python3-sphinx=3.5.4-2 python3-sphinx-gallery=0.8.2-1 python3-sympy=1.7.1-3 python3-toml=0.10.2-1 python3-traitlets=5.0.5-3 python3-tz=2021.1-1 python3-uncertainties=3.1.5-1 python3-urllib3=1.26.5-1~exp1 python3-wcwidth=0.1.9+dfsg1-2 python3-zipp=1.0.0-3 python3.9=3.9.7-2 python3.9-minimal=3.9.7-2 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sgml-base=1.30 sphinx-common=3.5.4-2 sysvinit-utils=2.96-7 tar=1.34+dfsg-1 ttf-bitstream-vera=1.10-8.1 tzdata=2021a-1 util-linux=2.37.2-1 xml-core=0.18+nmu1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210906T024530Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210906T024530Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210909T150530Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210902T205533Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d lmfit-py=1.0.2-1 && mkdir -p /build/lmfit-py-4Y2iDh && dpkg-source --no-check -x /*.dsc /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2 && chown -R builduser:builduser /build/lmfit-py-4Y2iDh" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1630746036" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/lmfit-py-4Y2iDh /tmp/lmfit-py-1.0.2-13zba_y9u bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20210902T205533Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.QTzkxmJ7Jh as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.QTzkxmJ7Jh Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210902T205533Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210902T205533Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (980 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4670 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-17) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210906T024530Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210906T024530Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210909T150530Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210902T205533Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.QTzkxmJ7Jh Get:1 http://snapshot.notset.fr/archive/debian/20210906T024530Z bookworm InRelease [112 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210909T150530Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210902T205533Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210906T024530Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210906T024530Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210906T024530Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210906T024530Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210906T024530Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210906T024530Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210906T024530Z bookworm/main Sources [11.6 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210906T024530Z bookworm/main amd64 Packages [11.3 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210909T150530Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20210909T150530Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20210909T150530Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210909T150530Z unstable/main amd64 Packages [11.9 MB] Fetched 35.1 MB in 29s (1207 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.QTzkxmJ7Jh I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d lmfit-py=1.0.2-1 && mkdir -p /build/lmfit-py-4Y2iDh && dpkg-source --no-check -x /*.dsc /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2 && chown -R builduser:builduser /build/lmfit-py-4Y2iDh"' exec /tmp/mmdebstrap.QTzkxmJ7Jh Reading package lists... NOTICE: 'lmfit-py' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/lmfit-py.git Please use: git clone https://salsa.debian.org/science-team/lmfit-py.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 317 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210906T024530Z bookworm/main lmfit-py 1.0.2-1 (dsc) [2694 B] Get:2 http://snapshot.notset.fr/archive/debian/20210906T024530Z bookworm/main lmfit-py 1.0.2-1 (tar) [306 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210906T024530Z bookworm/main lmfit-py 1.0.2-1 (diff) [8356 B] Fetched 317 kB in 0s (1063 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'lmfit-py_1.0.2-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting lmfit-py in /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2 dpkg-source: info: unpacking lmfit-py_1.0.2.orig.tar.gz dpkg-source: info: unpacking lmfit-py_1.0.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deactivate_test.patch dpkg-source: info: applying exclude_failing_test.patch dpkg-source: info: applying 0003-upstream-fix-for-scipy-1.7.0.patch dpkg-source: info: applying 0004-jupyter_sphinx-is-not-yet-working-on-Debian.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1630746036" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.QTzkxmJ7Jh dpkg-buildpackage: info: source package lmfit-py dpkg-buildpackage: info: source version 1.0.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Picca Frédéric-Emmanuel dpkg-source --before-build . debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild install -d /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/.debhelper/generated/_source/home pybuild --clean --test-pytest -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars debian/files rm -fr -- debian/python3-lmfit/ debian/tmp/ debian/python-lmfit-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-indep dh binary-indep --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild install -d /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/.debhelper/generated/_source/home pybuild --configure --test-pytest -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -i -O--buildsystem=pybuild pybuild --build --test-pytest -i python{version} -p 3.9 I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/__init__.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/_ampgo.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/_version.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/confidence.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/jsonutils.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/lineshapes.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/minimizer.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/model.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/models.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/parameter.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/printfuncs.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit UPDATING /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/_version.py set /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/_version.py to '1.0.2' dh: command-omitted: The call to "dh_auto_test -i -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars rm -fr -- debian/.debhelper/generated/python3-lmfit/ debian/python3-lmfit/ debian/tmp/ debian/.debhelper/generated/python-lmfit-doc/ debian/python-lmfit-doc/ dh_auto_install -i -O--buildsystem=pybuild install -d /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/tmp pybuild --install --test-pytest -i python{version} -p 3.9 --dest-dir /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/tmp I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit running install running build running build_py UPDATING /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/_version.py set /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/_version.py to '1.0.2' running install_lib creating /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit creating /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr creating /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib creating /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9 creating /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages creating /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/__init__.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/_ampgo.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/confidence.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/jsonutils.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/lineshapes.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/minimizer.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/model.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/models.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/parameter.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/printfuncs.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/.pybuild/cpython3_3.9_lmfit/build/lmfit/_version.py -> /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit byte-compiling /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__init__.py to __init__.cpython-39.pyc byte-compiling /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/_ampgo.py to _ampgo.cpython-39.pyc byte-compiling /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/confidence.py to confidence.cpython-39.pyc byte-compiling /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/jsonutils.py to jsonutils.cpython-39.pyc byte-compiling /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/lineshapes.py to lineshapes.cpython-39.pyc byte-compiling /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/minimizer.py to minimizer.cpython-39.pyc byte-compiling /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/model.py to model.cpython-39.pyc byte-compiling /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/models.py to models.cpython-39.pyc byte-compiling /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/parameter.py to parameter.cpython-39.pyc byte-compiling /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/printfuncs.py to printfuncs.cpython-39.pyc byte-compiling /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/_version.py to _version.cpython-39.pyc running install_egg_info running egg_info writing lmfit.egg-info/PKG-INFO writing dependency_links to lmfit.egg-info/dependency_links.txt writing requirements to lmfit.egg-info/requires.txt writing top-level names to lmfit.egg-info/top_level.txt reading manifest file 'lmfit.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.txt' warning: no previously-included files found matching '*.pyc' warning: no previously-included files found matching 'core.*' warning: no previously-included files found matching '*~' warning: no previously-included files found matching '*.pdf' warning: no files found matching '*.dat' under directory 'tests' warning: no previously-included files matching '*' found under directory 'examples/documentation' warning: no previously-included files matching '*' found under directory 'doc/_build' warning: no previously-included files matching '*' found under directory 'doc/examples' warning: no previously-included files matching '*.pdf' found under directory 'doc' warning: no previously-included files matching '*.csv' found under directory 'doc' warning: no previously-included files matching '*.dat' found under directory 'doc' warning: no previously-included files matching '*.sav' found under directory 'doc' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution writing manifest file 'lmfit.egg-info/SOURCES.txt' Copying lmfit.egg-info to /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit-1.0.2.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/lmfit-py-4Y2iDh/lmfit-py-1.0.2' PYTHONPATH=. http_proxy='localhost' python3 -m sphinx -N -bhtml -D mathjax_path="/usr/share/javascript/mathjax/MathJax.js" doc/ build/html # HTML generator Running Sphinx v3.5.4 Matplotlib created a temporary config/cache directory at /tmp/matplotlib-24vfgt_s because the default path (/nonexistent/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... loading intersphinx inventory from https://docs.scipy.org/doc/scipy/reference/objects.inv... loading intersphinx inventory from https://matplotlib.org/objects.inv... intersphinx inventory has moved: https://matplotlib.org/objects.inv -> https://matplotlib.org/stable/objects.inv intersphinx inventory has moved: https://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/objects.inv generating gallery... Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files. generating gallery for examples... [ 5%] example_use_pandas.py generating gallery for examples... [ 11%] example_expression_model.py generating gallery for examples... [ 17%] example_fit_with_inequality.py generating gallery for examples... [ 23%] example_diffev.py generating gallery for examples... [ 29%] example_fit_with_bounds.py generating gallery for examples... [ 35%] example_reduce_fcn.py generating gallery for examples... [ 41%] example_sympy.py generating gallery for examples... [ 47%] example_fit_with_algebraic_constraint.py generating gallery for examples... [ 52%] example_fit_multi_datasets.py generating gallery for examples... [ 58%] example_fit_with_derivfunc.py generating gallery for examples... [ 64%] example_Model_interface.py generating gallery for examples... [ 70%] example_detect_outliers.py generating gallery for examples... [ 76%] example_confidence_interval.py generating gallery for examples... [ 82%] example_complex_resonator_model.py generating gallery for examples... [ 88%] lmfit_emcee_model_selection.py generating gallery for examples... [ 94%] example_two_dimensional_peak.py generating gallery for examples... [100%] example_brute.py computation time summary: - ../examples/example_confidence_interval.py: 37.23 sec 0.0 MB - ../examples/example_brute.py: 31.10 sec 0.0 MB - ../examples/example_sympy.py: 2.91 sec 0.0 MB - ../examples/example_detect_outliers.py: 2.25 sec 0.0 MB - ../examples/example_two_dimensional_peak.py: 1.85 sec 0.0 MB - ../examples/example_Model_interface.py: 0.58 sec 0.0 MB - ../examples/example_use_pandas.py: 0.36 sec 0.0 MB - ../examples/example_fit_multi_datasets.py: 0.36 sec 0.0 MB - ../examples/example_diffev.py: 0.35 sec 0.0 MB - ../examples/example_fit_with_algebraic_constraint.py: 0.30 sec 0.0 MB - ../examples/example_complex_resonator_model.py: 0.24 sec 0.0 MB - ../examples/example_fit_with_derivfunc.py: 0.23 sec 0.0 MB - ../examples/example_reduce_fcn.py: 0.16 sec 0.0 MB - ../examples/example_expression_model.py: 0.16 sec 0.0 MB - ../examples/example_fit_with_inequality.py: 0.13 sec 0.0 MB - ../examples/example_fit_with_bounds.py: 0.12 sec 0.0 MB - ../examples/lmfit_emcee_model_selection.py: 0.00 sec 0.0 MB building [mo]: targets for 0 po files that are out of date building [html]: targets for 14 source files that are out of date updating environment: [new config] 33 added, 0 changed, 0 removed reading sources... [ 3%] bounds reading sources... [ 6%] builtin_models reading sources... [ 9%] confidence reading sources... [ 12%] constraints reading sources... [ 15%] contents reading sources... [ 18%] examples/example_Model_interface reading sources... [ 21%] examples/example_brute reading sources... [ 24%] examples/example_complex_resonator_model reading sources... [ 27%] examples/example_confidence_interval reading sources... [ 30%] examples/example_detect_outliers reading sources... [ 33%] examples/example_diffev reading sources... [ 36%] examples/example_expression_model reading sources... [ 39%] examples/example_fit_multi_datasets reading sources... [ 42%] examples/example_fit_with_algebraic_constraint reading sources... [ 45%] examples/example_fit_with_bounds reading sources... [ 48%] examples/example_fit_with_derivfunc reading sources... [ 51%] examples/example_fit_with_inequality reading sources... [ 54%] examples/example_reduce_fcn reading sources... [ 57%] examples/example_sympy reading sources... [ 60%] examples/example_two_dimensional_peak reading sources... [ 63%] examples/example_use_pandas reading sources... [ 66%] examples/index reading sources... [ 69%] examples/lmfit_emcee_model_selection reading sources... [ 72%] examples/sg_execution_times reading sources... [ 75%] faq reading sources... [ 78%] fitting reading sources... [ 81%] index reading sources... [ 84%] installation reading sources... [ 87%] intro reading sources... [ 90%] model reading sources... [ 93%] parameters reading sources... [ 96%] support reading sources... [100%] whatsnew /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:27: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from lmfit.models import LinearModel, LorentzianModel peak = LorentzianModel() background = LinearModel() model = peak + background /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:276: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import ExpressionModel mod = ExpressionModel('off + amp * exp(-x/x0) * sin(x*phase)') /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:290: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, linspace, sin x = linspace(0, 10, 501) params = mod.make_params(off=0.25, amp=1.0, x0=2.0, phase=0.04) y = mod.eval(params, x=x) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:311: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: script = """ def mycurve(x, amp, cen, sig): loren = lorentzian(x, amplitude=amp, center=cen, sigma=sig) gauss = gaussian(x, amplitude=amp, center=cen, sigma=sig) return log(loren) * gradient(gauss) / gradient(x) """ /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:322: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = ExpressionModel('mycurve(x, height, mid, wid)', init_script=script, independent_vars=['x']) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:341: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from numpy import loadtxt from lmfit.models import GaussianModel data = loadtxt('test_peak.dat') x = data[:, 0] y = data[:, 1] mod = GaussianModel() pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:361: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report(min_correl=0.25)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:372: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import matplotlib as mpl mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' import matplotlib.pyplot as plt plt.plot(x, y, 'b-') plt.plot(x, out.best_fit, 'r-', label='Gaussian Model') plt.legend(loc='best') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:393: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import LorentzianModel mod = LorentzianModel() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:401: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:410: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'b-') plt.plot(x, out.best_fit, 'r-', label='Lorentzian Model') plt.legend(loc='best') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:421: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import VoigtModel mod = VoigtModel() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:428: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:439: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'b-') axes[0].plot(x, out.best_fit, 'r-', label='Voigt Model\ngamma constrained') axes[0].legend(loc='best') # free gamma parameter pars['gamma'].set(value=0.7, vary=True, expr='') out_gamma = mod.fit(y, pars, x=x) axes[1].plot(x, y, 'b-') axes[1].plot(x, out_gamma.best_fit, 'r-', label='Voigt Model\ngamma unconstrained') axes[1].legend(loc='best') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:470: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out_gamma.fit_report(min_correl=0.25)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:507: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_stepmodel.py :hide-output: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:518: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:525: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'b') plt.plot(x, out.init_fit, 'k--', label='initial fit') plt.plot(x, out.best_fit, 'r-', label='best fit') plt.legend(loc='best') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:548: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss.py :hide-output: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:564: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:575: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'b') axes[0].plot(x, init, 'k--', label='initial fit') axes[0].plot(x, out.best_fit, 'r-', label='best fit') axes[0].legend(loc='best') comps = out.eval_components(x=x) axes[1].plot(x, y, 'b') axes[1].plot(x, comps['g1_'], 'g--', label='Gaussian component 1') axes[1].plot(x, comps['g2_'], 'm--', label='Gaussian component 2') axes[1].plot(x, comps['exp_'], 'k--', label='Exponential component') axes[1].legend(loc='best') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:616: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss2.py :hide-code: :hide-output: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:622: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'b') plt.plot(x, out.init_fit, 'k--', label='initial fit') plt.plot(x, out.best_fit, 'r-', label='best fit') plt.legend(loc='best') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/builtin_models.rst:636: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/confidence.rst:45: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np import lmfit x = np.linspace(0.3, 10, 100) np.random.seed(0) y = 1/(0.1*x) + 2 + 0.1*np.random.randn(x.size) pars = lmfit.Parameters() pars.add_many(('a', 0.1), ('b', 1)) def residual(p): return 1/(p['a']*x) + p['b'] - y /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/confidence.rst:66: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mini = lmfit.Minimizer(residual, pars) result = mini.minimize() print(lmfit.fit_report(result.params)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/confidence.rst:76: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ci = lmfit.conf_interval(mini, result) lmfit.printfuncs.report_ci(ci) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/confidence.rst:103: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: for p in result.params: result.params[p].stderr = abs(result.params[p].value * 0.1) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/confidence.rst:124: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import warnings warnings.filterwarnings(action="ignore") import matplotlib as mpl import matplotlib.pyplot as plt mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/confidence.rst:135: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_confidence_advanced.py :hide-output: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/confidence.rst:140: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: lmfit.report_fit(out2.params, min_correl=0.5) print('') lmfit.printfuncs.report_ci(ci) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/confidence.rst:157: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a1', 't2', 30, 30) ctp = axes[0].contourf(cx, cy, grid, np.linspace(0, 1, 11)) fig.colorbar(ctp, ax=axes[0]) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a2', 't2', 30, 30) ctp = axes[1].contourf(cx, cy, grid, np.linspace(0, 1, 11)) fig.colorbar(ctp, ax=axes[1]) axes[1].set_xlabel('a2') axes[1].set_ylabel('t2') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/confidence.rst:191: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob'] cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob'] axes[0].scatter(cx1, cy1, c=prob, s=30) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') axes[1].scatter(cx2, cy2, c=prob2, s=30) axes[1].set_xlabel('t2') axes[1].set_ylabel('a1') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/confidence.rst:210: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob'] cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob'] axes[0].scatter(cx1, cy1, c=prob, s=30) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') axes[1].scatter(cx2, cy2, c=prob2, s=30) axes[1].set_xlabel('t2') axes[1].set_ylabel('a1') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/constraints.rst:43: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Parameters pars = Parameters() pars.add('frac_curve1', value=0.5, min=0, max=1) pars.add('frac_curve2', expr='1-frac_curve1') /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/constraints.rst:85: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() pars.add('amp_1', value=0.5, min=0, max=1) pars.add('cen_1', value=2.2) pars.add('wid_1', value=0.2) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/constraints.rst:94: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars.add('amp_2', expr='(2.0 - amp_1**2)') pars.add('wid_2', expr='sqrt(pi)*wid_1') pars.add('cen_2', expr='cen_1 * wid_2 / max(wid_1, 0.001)') /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/constraints.rst:103: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars.add('param_a', value=1) pars.add('param_b', value=2) pars.add('test_val', value=100) pars.add('bounded', expr='param_a if test_val/2. > 100 else param_b') /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/constraints.rst:113: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: if pars['test_val'].value/2. > 100: bounded = pars['param_a'].value else: bounded = pars['param_b'].value /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/constraints.rst:132: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() pars.add('x', value=5, vary=True) pars.add('delta', value=5, max=10, vary=True) pars.add('y', expr='delta-x') /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/constraints.rst:175: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: def mylorentzian(x, amp, cen, wid): "lorentzian function: wid = half-width at half-max" return (amp / (1 + ((x-cen) / wid)**2)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/constraints.rst:185: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Parameters pars = Parameters() pars._asteval.symtable['lorentzian'] = mylorentzian /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/constraints.rst:194: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Minimizer def userfcn(x, params): pass fitter = Minimizer(userfcn, pars) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/constraints.rst:207: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() fitter = Minimizer(userfcn, pars) fitter.params._asteval.symtable['lorentzian'] = mylorentzian /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/faq.rst:248: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np import lmfit def quad_off(x, x0, a, b, c): model = a + b*x**2 model[np.where(x pi/2: shift = shift - sign(shift)*pi if abs(period) < 1.e-10: period = sign(period)*1.e-10 model = parvals['amp'] * sin(shift + x/period) * exp(-x*x*decay*decay) if data is None: return model if eps is None: return model - data return (model-data) / eps /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:98: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: from lmfit import Parameter, Parameters params = Parameters() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:105: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: params['period'] = Parameter(name='period', value=2, min=1.e-10) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:111: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: period = 1 /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:116: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: if abs(period) < 1.e-10: period = sign(period)*1.e-10 /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:433: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_fitting_withreport.py :hide-output: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:438: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(fit_report(out)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:447: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('-------------------------------') print('Parameter Value Stderr') for name, param in out.params.items(): print('{:7s} {:11.5f} {:11.5f}'.format(name, param.value, param.stderr)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:555: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import warnings warnings.filterwarnings(action="ignore") import matplotlib as mpl import matplotlib.pyplot as plt mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:568: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: import matplotlib.pyplot as plt import numpy as np import lmfit x = np.linspace(1, 10, 250) np.random.seed(0) y = 3.0 * np.exp(-x / 2) - 5.0 * np.exp(-(x - 0.1) / 10.) + 0.1 * np.random.randn(x.size) plt.plot(x, y, 'b') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:583: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: p = lmfit.Parameters() p.add_many(('a1', 4.), ('a2', 4.), ('t1', 3.), ('t2', 3., True)) def residual(p): v = p.valuesdict() return v['a1'] * np.exp(-x / v['t1']) + v['a2'] * np.exp(-(x - 0.1) / v['t2']) - y /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:597: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mi = lmfit.minimize(residual, p, method='nelder', nan_policy='omit') lmfit.printfuncs.report_fit(mi.params, min_correl=0.5) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:604: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: plt.plot(x, y, 'b') plt.plot(x, residual(mi.params) + y, 'r', label='best fit') plt.legend(loc='best') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:631: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mi.params.add('__lnsigma', value=np.log(0.1), min=np.log(0.001), max=np.log(2)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:638: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: res = lmfit.minimize(residual, method='emcee', nan_policy='omit', burn=300, steps=1000, thin=20, params=mi.params, is_weighted=False, progress=False) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:657: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: plt.plot(res.acceptance_fraction, 'b') plt.xlabel('walker') plt.ylabel('acceptance fraction') /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:666: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: import corner emcee_plot = corner.corner(res.flatchain, labels=res.var_names, truths=list(res.params.valuesdict().values())) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:678: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('median of posterior probability distribution') print('--------------------------------------------') lmfit.report_fit(res.params) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:699: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: highest_prob = np.argmax(res.lnprob) hp_loc = np.unravel_index(highest_prob, res.lnprob.shape) mle_soln = res.chain[hp_loc] for i, par in enumerate(p): p[par].value = mle_soln[i] print('\nMaximum Likelihood Estimation from emcee ') print('-------------------------------------------------') print('Parameter MLE Value Median Value Uncertainty') fmt = ' {:5s} {:11.5f} {:11.5f} {:11.5f}'.format for name, param in p.items(): print(fmt(name, param.value, res.params[name].value, res.params[name].stderr)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/fitting.rst:723: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('\nError estimates from emcee:') print('------------------------------------------------------') print('Parameter -2sigma -1sigma median +1sigma +2sigma') for name in p.keys(): quantiles = np.percentile(res.flatchain[name], [2.275, 15.865, 50, 84.135, 97.275]) median = quantiles[2] err_m2 = quantiles[0] - median err_m1 = quantiles[1] - median err_p1 = quantiles[3] - median err_p2 = quantiles[4] - median fmt = ' {:5s} {:8.4f} {:8.4f} {:8.4f} {:8.4f} {:8.4f}'.format print(fmt(name, err_m2, err_m1, median, err_p1, err_p2)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/intro.rst:43: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sin def residual(variables, x, data, eps_data): """Model a decaying sine wave and subtract data.""" amp = variables[0] phaseshift = variables[1] freq = variables[2] decay = variables[3] model = amp * sin(x*freq + phaseshift) * exp(-x*x*decay) return (data-model) / eps_data /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/intro.rst:60: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import linspace, random from scipy.optimize import leastsq # generate synthetic data with noise x = linspace(0, 100) eps_data = random.normal(size=x.size, scale=0.2) data = 7.5 * sin(x*0.22 + 2.5) * exp(-x*x*0.01) + eps_data variables = [10.0, 0.2, 3.0, 0.007] out = leastsq(residual, variables, args=(x, data, eps_data)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/intro.rst:118: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sin from lmfit import minimize, Parameters def residual(params, x, data, eps_data): amp = params['amp'] phaseshift = params['phase'] freq = params['frequency'] decay = params['decay'] model = amp * sin(x*freq + phaseshift) * exp(-x*x*decay) return (data-model) / eps_data params = Parameters() params.add('amp', value=10) params.add('decay', value=0.007) params.add('phase', value=0.2) params.add('frequency', value=3.0) out = minimize(residual, params, args=(x, data, eps_data)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/intro.rst:150: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = Parameters() params.add('amp', value=10, vary=False) params.add('decay', value=0.007, min=0.0) params.add('phase', value=0.2) params.add('frequency', value=3.0, max=10) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/intro.rst:163: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: params['amp'].vary = False params['decay'].min = 0.10 /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:49: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import matplotlib as mpl mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:57: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, linspace, random def gaussian(x, amp, cen, wid): return amp * exp(-(x-cen)**2 / wid) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:67: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from scipy.optimize import curve_fit x = linspace(-10, 10, 101) y = gaussian(x, 2.33, 0.21, 1.51) + random.normal(0, 0.2, x.size) init_vals = [1, 0, 1] # for [amp, cen, wid] best_vals, covar = curve_fit(gaussian, x, y, p0=init_vals) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:89: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Model gmodel = Model(gaussian) print('parameter names: {}'.format(gmodel.param_names)) print('independent variables: {}'.format(gmodel.independent_vars)) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:117: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = gmodel.make_params() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:126: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = gmodel.make_params(cen=0.3, amp=3, wid=1.25) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:140: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: x_eval = linspace(0, 10, 201) y_eval = gmodel.eval(params, x=x_eval) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:147: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: y_eval = gmodel.eval(x=x_eval, cen=6.5, amp=100, wid=2.0) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:156: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: result = gmodel.fit(y, params, x=x) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:162: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: result = gmodel.fit(y, x=x, cen=0.5, amp=10, wid=2.0) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:169: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_gaussian.py :hide-output: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:176: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:186: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'bo') plt.plot(x, result.init_fit, 'k--', label='initial fit') plt.plot(x, result.best_fit, 'r-', label='best fit') plt.legend(loc='best') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:200: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: gmodel = Model(gaussian) result = gmodel.fit(y, params, x=x, amp=5, cen=5, wid=1) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:321: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np from lmfit import Model def decay(t, tau, N): return N*np.exp(-t/tau) decay_model = Model(decay) print('independent variables: {}'.format(decay_model.independent_vars)) params = decay_model.make_params() print('\nParameters:') for pname, par in params.items(): print(pname, par) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:346: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: decay_model = Model(decay, independent_vars=['tau']) print('independent variables: {}'.format(decay_model.independent_vars)) params = decay_model.make_params() print('\nParameters:') for pname, par in params.items(): print(pname, par) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:378: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: def decay2(t, tau, N=10, check_positive=False): if check_small: arg = abs(t)/max(1.e-9, abs(tau)) else: arg = t/tau return N*np.exp(arg) mod = Model(decay2) params = mod.make_params() print('Parameters:') for pname, par in params.items(): print(pname, par) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:414: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, amplitude=1, center=0, sigma=1): # function definition, for now just ``pass`` pass mod = Model(myfunc, prefix='f1_') params = mod.make_params() print('Parameters:') for pname, par in params.items(): print(pname, par) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:455: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, a=1, b=0): return a*x + 10*a - b /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:462: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, a, b): return a*x + 10*a - b /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:479: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(myfunc) pars = mod.make_params(a=3, b=0.5) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:495: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(myfunc) mod.set_param_hint('a', value=1.0) mod.set_param_hint('b', value=0.3, min=0, max=1.0) pars = mod.make_params() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:513: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: x = linspace(0, 10, 100) y_eval = mod.eval(x=x, a=7.0, b=-2.0) y_sim = y_eval + random.normal(0, 0.2, x.size) out = mod.fit(y_sim, pars, x=x, a=3.0, b=0.0) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:537: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(myfunc) mod.set_param_hint('a', value=1.0) mod.set_param_hint('b', value=0.3, min=0, max=1.0) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:546: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('Parameter hints:') for pname, par in mod.param_hints.items(): print(pname, par) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:561: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian) mod.set_param_hint('fwhm', expr='2.3548*sigma') /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:608: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_savemodel.py /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:612: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_loadmodel.py :hide-output: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:819: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_gaussian.py :hide-output: :hide-code: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:823: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: dely = result.eval_uncertainty(sigma=3) plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB", label='3-$\sigma$ uncertainty band') /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:834: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'bo') plt.plot(x, result.init_fit, 'k--', label='initial fit') plt.plot(x, result.best_fit, 'r-', label='best fit') plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB", label='3-$\sigma$ uncertainty band') plt.legend(loc='best') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:873: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_savemodelresult.py :hide-output: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:878: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_loadmodelresult.py :hide-output: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:899: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: def gaussian_plus_line(x, amp, cen, wid, slope, intercept): """line + 1-d gaussian""" gauss = (amp / (sqrt(2*pi) * wid)) * exp(-(x-cen)**2 / (2*wid**2)) line = slope*x + intercept return gauss + line /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:910: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian_plus_line) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:922: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: def line(x, slope, intercept): """a line""" return slope*x + intercept /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:930: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian) + Model(line) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:936: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_two_components.py :hide-output: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:941: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:948: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'bo') axes[0].plot(x, result.init_fit, 'k--', label='initial fit') axes[0].plot(x, result.best_fit, 'r-', label='best fit') axes[0].legend(loc='best') comps = result.eval_components() axes[1].plot(x, y, 'bo') axes[1].plot(x, comps['gaussian'], 'k--', label='Gaussian component') axes[1].plot(x, comps['line'], 'r--', label='Line component') axes[1].legend(loc='best') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:970: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: comps = result.eval_components() plt.plot(x, y, 'bo') plt.plot(x, comps['gaussian'], 'k--', label='Gaussian component') plt.plot(x, comps['line'], 'r--', label='Line component') /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:992: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: xwide = linspace(-5, 25, 3001) predicted = mod.eval(result.params, x=xwide) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:1009: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: def fcn1(x, a): pass def fcn2(x, b): pass def fcn3(x, c): pass /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:1021: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(fcn1) + Model(fcn2) * Model(fcn3) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:1035: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np def convolve(dat, kernel): """simple convolution of two arrays""" npts = min(len(dat), len(kernel)) pad = np.ones(npts) tmp = np.concatenate((pad*dat[0], dat, pad*dat[-1])) out = np.convolve(tmp, kernel, mode='valid') noff = int((len(out) - npts) / 2) return (out[noff:])[:npts] /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:1053: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_composite.py :hide-output: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:1058: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/model.rst:1065: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'bo') axes[0].plot(x, result.init_fit, 'k--', label='initial fit') axes[0].plot(x, result.best_fit, 'r-', label='best fit') axes[0].legend(loc='best') axes[1].plot(x, y, 'bo') axes[1].plot(x, 10*comps['jump'], 'k--', label='Jump component') axes[1].plot(x, 10*comps['gaussian'], 'r-', label='Gaussian component') axes[1].legend(loc='best') plt.show() /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/parameters.rst:91: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_parameters_basic.py :hide-output: /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/doc/parameters.rst:99: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: def fcn2min(params, x, data): """Model a decaying sine wave and subtract data.""" v = params.valuesdict() model = v['amp'] * np.sin(x*v['omega'] + v['shift']) * np.exp(-x*x*v['decay']) return model - data looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... 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[100%] sg_execution_times.html dh_installdocs -i install -d debian/python3-lmfit/usr/share/doc/python3-lmfit install -d debian/.debhelper/generated/python3-lmfit install -p -m0644 debian/copyright debian/python3-lmfit/usr/share/doc/python3-lmfit/copyright install -d debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc install -d debian/.debhelper/generated/python-lmfit-doc install -p -m0644 debian/copyright debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/copyright dh_installdocs build/html -p python-lmfit-doc --doc-main-package=python3-lmfit install -d debian/python-lmfit-doc/usr/share/doc/python3-lmfit cd 'build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/lmfit-py-4Y2iDh/lmfit-py-1.0.2/debian/python-lmfit-doc/usr/share/doc/python3-lmfit chmod -R u\+rw,go=rX debian/python-lmfit-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/copyright make[1]: Leaving directory '/build/lmfit-py-4Y2iDh/lmfit-py-1.0.2' dh_sphinxdoc -i -O--buildsystem=pybuild ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js ln -sf ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/underscore.js ln -sf ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/jquery.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js rm -rf debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/.doctrees rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/.buildinfo (grep -a -s -v sphinxdoc:Depends debian/python-lmfit-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 2.4.3-5~)") > debian/python-lmfit-doc.substvars.new mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars (grep -a -s -v sphinxdoc:Depends debian/python-lmfit-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 2.0), libjs-sphinxdoc (>= 2.4.3-5~)") > debian/python-lmfit-doc.substvars.new mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars (grep -a -s -v sphinxdoc:Depends debian/python-lmfit-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 1.8), libjs-sphinxdoc (>= 2.0), libjs-sphinxdoc (>= 2.4.3-5~)") > debian/python-lmfit-doc.substvars.new mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars (grep -a -s -v sphinxdoc:Depends debian/python-lmfit-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 1.0), libjs-sphinxdoc (>= 1.8), libjs-sphinxdoc (>= 2.0), libjs-sphinxdoc (>= 2.4.3-5~)") > debian/python-lmfit-doc.substvars.new mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars (grep -a -s -v sphinxdoc:Built-Using debian/python-lmfit-doc.substvars; echo "sphinxdoc:Built-Using=sphinx (= 3.5.4-2)") > debian/python-lmfit-doc.substvars.new mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars dh_installchangelogs -i -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/changelog.Debian install -p -m0644 debian/changelog debian/python3-lmfit/usr/share/doc/python3-lmfit/changelog.Debian dh_python3 -i -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20201102+nmu1 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-i', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': False, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9) D: dh_python3 debhelper:107: skipping package: python-lmfit-doc D: dh_python3 debhelper:152: source=lmfit-py, binary packages=['python3-lmfit'] D: dh_python3 dh_python3:183: processing package python3-lmfit... D: dh_python3 fs:49: moving files from debian/python3-lmfit/usr/lib/python3.9/dist-packages to debian/python3-lmfit/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-lmfit details = {'requires.txt': {'debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-1.0.2.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-lmfit D: dh_python3 pydist:142: trying to find dependency for asteval>=0.9.16 (python=None) D: dh_python3 pydist:142: trying to find dependency for numpy>=1.16 (python=None) D: dh_python3 pydist:142: trying to find dependency for scipy>=1.2 (python=None) D: dh_python3 pydist:142: trying to find dependency for uncertainties>=3.0.1 (python=None) D: dh_python3 depends:275: D={'python3-uncertainties (>= 3.0.2.github~)', 'python3-scipy', 'python3-asteval (>= 0.9.21)', 'python3-numpy', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/underscore.js ln -s ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/underscore.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/jquery.js ln -s 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File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_diffev_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/lmfitheader.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/no_image.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/relbg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_004.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_lmfit_emcee_model_selection_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/bodybg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/broken_example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/footerbg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/headerbg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/listitem.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_002.png using File::StripNondeterminism::handlers::png dh_compress -i -O--buildsystem=pybuild cd debian/python3-lmfit cd debian/python-lmfit-doc chmod a-x usr/share/doc/python3-lmfit/changelog.Debian gzip -9nf usr/share/doc/python3-lmfit/changelog.Debian cd '/build/lmfit-py-4Y2iDh/lmfit-py-1.0.2' chmod a-x usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/6069607ae016c4f4f055d1c8dfd4bfa7/example_sympy.ipynb usr/share/doc/python3-lmfit/html/_downloads/87be2ee5d3294a608face2290f955fe3/example_two_dimensional_peak.py usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb usr/share/doc/python3-lmfit/html/_downloads/ee6bdfefbd3fee18a7b2cb99c291f27e/example_two_dimensional_peak.ipynb gzip -9nf usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/6069607ae016c4f4f055d1c8dfd4bfa7/example_sympy.ipynb usr/share/doc/python3-lmfit/html/_downloads/87be2ee5d3294a608face2290f955fe3/example_two_dimensional_peak.py usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb usr/share/doc/python3-lmfit/html/_downloads/ee6bdfefbd3fee18a7b2cb99c291f27e/example_two_dimensional_peak.ipynb cd '/build/lmfit-py-4Y2iDh/lmfit-py-1.0.2' dh_fixperms -i -O--buildsystem=pybuild find debian/python3-lmfit ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-lmfit-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-lmfit/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-lmfit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-lmfit-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-lmfit-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-lmfit/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-lmfit -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-lmfit-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-lmfit/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-lmfit-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild install -d debian/python3-lmfit/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/postinst cat debian/python3-lmfit.postinst.debhelper >> debian/python3-lmfit/DEBIAN/postinst chmod 0755 -- debian/python3-lmfit/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/prerm cat debian/python3-lmfit.prerm.debhelper >> debian/python3-lmfit/DEBIAN/prerm chmod 0755 -- debian/python3-lmfit/DEBIAN/prerm install -d debian/python-lmfit-doc/DEBIAN dh_numpy3 -i -O--buildsystem=pybuild (grep -a -s -v python3:Depends debian/python3-lmfit.substvars; echo "python3:Depends=python3-asteval (>= 0.9.21), python3-numpy, python3-scipy, python3-uncertainties (>= 3.0.2.github~), python3:any") > debian/python3-lmfit.substvars.new mv debian/python3-lmfit.substvars.new debian/python3-lmfit.substvars (grep -a -s -v python3:Depends debian/python-lmfit-doc.substvars; echo python3:Depends=python3-numpy) > debian/python-lmfit-doc.substvars.new mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars dh_gencontrol -i -O--buildsystem=pybuild echo misc:Depends= >> debian/python3-lmfit.substvars echo misc:Pre-Depends= >> debian/python3-lmfit.substvars dpkg-gencontrol -ppython3-lmfit -ldebian/changelog -Tdebian/python3-lmfit.substvars -Pdebian/python3-lmfit echo misc:Depends= >> debian/python-lmfit-doc.substvars echo misc:Pre-Depends= >> debian/python-lmfit-doc.substvars dpkg-gencontrol -ppython-lmfit-doc -ldebian/changelog -Tdebian/python-lmfit-doc.substvars -Pdebian/python-lmfit-doc chmod 0644 -- debian/python3-lmfit/DEBIAN/control dpkg-gencontrol: warning: package python-lmfit-doc: substitution variable ${python3:Depends} unused, but is defined chmod 0644 -- debian/python-lmfit-doc/DEBIAN/control dh_md5sums -i -O--buildsystem=pybuild cd debian/python3-lmfit >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-lmfit-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-lmfit/DEBIAN/md5sums chmod 0644 -- debian/python-lmfit-doc/DEBIAN/md5sums dh_builddeb -i -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-lmfit .. dpkg-deb --root-owner-group --build debian/python-lmfit-doc .. dpkg-deb: building package 'python3-lmfit' in '../python3-lmfit_1.0.2-1_all.deb'. dpkg-deb: building package 'python-lmfit-doc' in '../python-lmfit-doc_1.0.2-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../lmfit-py_1.0.2-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/lmfit-py-4Y2iDh /tmp/lmfit-py-1.0.2-13zba_y9u I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.QTzkxmJ7Jh... I: success in 682.2275 seconds md5: Value of 'md5' differs for python-lmfit-doc_1.0.2-1_all.deb md5: Size differs for python-lmfit-doc_1.0.2-1_all.deb md5: python3-lmfit_1.0.2-1_all.deb: OK sha1: Value of 'sha1' differs for python-lmfit-doc_1.0.2-1_all.deb sha1: Size differs for python-lmfit-doc_1.0.2-1_all.deb sha1: python3-lmfit_1.0.2-1_all.deb: OK sha256: Value of 'sha256' differs for python-lmfit-doc_1.0.2-1_all.deb sha256: Size differs for python-lmfit-doc_1.0.2-1_all.deb sha256: python3-lmfit_1.0.2-1_all.deb: OK Checksums: FAIL Cannot generate diffoscope for python-lmfit-doc_1.0.2-1_all.deb: RetryError[]