Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/l/lmfit-py/lmfit-py_1.0.1-6_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/lmfit-py-1.0.1-61gl9twbr/lmfit-py_1.0.1-6_all.buildinfo Get source package info: lmfit-py=1.0.1-6 Source URL: http://snapshot.notset.fr/mr/package/lmfit-py/1.0.1-6/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11.1 base-passwd=3.5.49 bash=5.1-2+b1 binutils=2.35.2-2 binutils-common=2.35.2-2 binutils-x86-64-linux-gnu=2.35.2-2 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20210119 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.76 debhelper=13.3.4 debianutils=4.11.2 dh-autoreconf=20 dh-python=4.20201102+nmu1 dh-strip-nondeterminism=1.11.0-1 diffutils=1:3.7-5 docutils-common=0.16+dfsg-4 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 fonts-lyx=2.3.6-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.2-2 libblas3=3.9.0-3 libblkid1=2.36.1-7 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-12 libc-dev-bin=2.31-12 libc6=2.31-12 libc6-dev=2.31-12 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.46.2-1 libcrypt-dev=1:4.4.18-4 libcrypt1=1:4.4.18-4 libctf-nobfd0=2.35.2-2 libctf0=2.35.2-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.257 libdebhelper-perl=13.3.4 libdeflate0=1.7-1 libdpkg-perl=1.20.9 libelf1=0.183-3 libexpat1=2.2.10-2 libffi7=3.3-6 libfile-stripnondeterminism-perl=1.11.0-1 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-4 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgfortran5=10.2.1-6 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-5 libicu67=67.1-6 libimagequant0=2.12.2-1.1 libisl23=0.23-1 libitm1=10.2.1-6 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.6-4 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui=1.12.1+dfsg-8 libjs-sphinxdoc=3.4.3-2 libjs-underscore=1.9.1~dfsg-3 libk5crypto3=1.18.3-5 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-5 libkrb5support0=1.18.3-5 liblapack3=3.9.0-3 liblbfgsb0=3.0+dfsg.3-9 liblcms2-2=2.12~rc1-2 liblsan0=10.2.1-6 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-3 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-2 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-7 libpam-modules-bin=1.4.0-7 libpam-runtime=1.4.0-7 libpam0g=1.4.0-7 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-4 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libpython3-stdlib=3.9.2-3 libpython3.9-minimal=3.9.2-1 libpython3.9-stdlib=3.9.2-1 libquadmath0=10.2.1-6 libreadline8=8.1-1 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.36.1-7 libsqlite3-0=3.34.1-3 libssl1.1=1.1.1k-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.3-5 libtiff5=4.2.0-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-5 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.28-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.69 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 openssl=1.1.1k-1 patch=2.7.6-7 perl=5.32.1-4 perl-base=5.32.1-4 perl-modules-5.32=5.32.1-4 po-debconf=1.0.21+nmu1 python-babel-localedata=2.8.0+dfsg.1-6 python-matplotlib-data=3.3.4-1 python3=3.9.2-3 python3-alabaster=0.7.8-1.1 python3-all=3.9.2-3 python3-asteval=0.9.19-2 python3-attr=20.3.0-1 python3-babel=2.8.0+dfsg.1-6 python3-backcall=0.2.0-1 python3-certifi=2020.6.20-1 python3-chardet=4.0.0-1 python3-cycler=0.10.0-3 python3-dateutil=2.8.1-5 python3-decorator=4.4.2-2 python3-distutils=3.9.2-1 python3-docutils=0.16+dfsg-4 python3-future=0.18.2-5 python3-idna=2.10-1 python3-imagesize=1.2.0-2 python3-importlib-metadata=1.6.0-2 python3-iniconfig=1.1.1-1 python3-ipython=7.20.0-1 python3-ipython-genutils=0.2.0-4 python3-jedi=0.18.0-1 python3-jinja2=2.11.3-1 python3-kiwisolver=1.3.1-1+b1 python3-lib2to3=3.9.2-1 python3-markupsafe=1.1.1-1+b3 python3-matplotlib=3.3.4-1 python3-minimal=3.9.2-3 python3-more-itertools=4.2.0-3 python3-numpy=1:1.19.5-1 python3-packaging=20.9-2 python3-pandas=1.1.5+dfsg-2 python3-pandas-lib=1.1.5+dfsg-2 python3-parso=0.8.1-1 python3-pexpect=4.8.0-2 python3-pickleshare=0.7.5-3 python3-pil=8.1.2+dfsg-0.1 python3-pkg-resources=52.0.0-3 python3-pluggy=0.13.0-6 python3-prompt-toolkit=3.0.16-1 python3-ptyprocess=0.7.0-1 python3-py=1.10.0-1 python3-pygments=2.7.1+dfsg-2 python3-pyparsing=2.4.7-1 python3-pytest=6.0.2-2 python3-requests=2.25.1+dfsg-2 python3-roman=2.0.0-5 python3-scipy=1.6.0-2 python3-setuptools=52.0.0-3 python3-six=1.15.0-2 python3-snowballstemmer=2.1.0-1 python3-sphinx=3.4.3-2 python3-sphinx-gallery=0.8.2-1 python3-toml=0.10.1-1 python3-traitlets=5.0.5-1 python3-tz=2021.1-1 python3-uncertainties=3.1.5-1 python3-urllib3=1.26.2-1 python3-wcwidth=0.1.9+dfsg1-2 python3-zipp=1.0.0-3 python3.9=3.9.2-1 python3.9-minimal=3.9.2-1 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 sgml-base=1.30 sphinx-common=3.4.3-2 sysvinit-utils=2.96-7 tar=1.34+dfsg-1 ttf-bitstream-vera=1.10-8.1 tzdata=2021a-1 util-linux=2.36.1-7 xml-core=0.18+nmu1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210506T091704Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d lmfit-py=1.0.1-6 && mkdir -p /build/lmfit-py-pa8xmR && dpkg-source --no-check -x /*.dsc /build/lmfit-py-pa8xmR/lmfit-py-1.0.1 && chown -R builduser:builduser /build/lmfit-py-pa8xmR" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/lmfit-py-pa8xmR/lmfit-py-1.0.1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1620289960" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/lmfit-py-pa8xmR /tmp/lmfit-py-1.0.1-61gl9twbr bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210506T091704Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.Ju434j6TGt as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.Ju434j6TGt Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210506T091704Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210506T091704Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (785 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4668 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-12) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210506T091704Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.Ju434j6TGt Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210506T091704Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 19s (1182 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.Ju434j6TGt I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d lmfit-py=1.0.1-6 && mkdir -p /build/lmfit-py-pa8xmR && dpkg-source --no-check -x /*.dsc /build/lmfit-py-pa8xmR/lmfit-py-1.0.1 && chown -R builduser:builduser /build/lmfit-py-pa8xmR"' exec /tmp/mmdebstrap.Ju434j6TGt Reading package lists... NOTICE: 'lmfit-py' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/lmfit-py.git Please use: git clone https://salsa.debian.org/science-team/lmfit-py.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 269 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main lmfit-py 1.0.1-6 (dsc) [2458 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main lmfit-py 1.0.1-6 (tar) [258 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main lmfit-py 1.0.1-6 (diff) [7912 B] Fetched 269 kB in 0s (1005 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'lmfit-py_1.0.1-6.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting lmfit-py in /build/lmfit-py-pa8xmR/lmfit-py-1.0.1 dpkg-source: info: unpacking lmfit-py_1.0.1.orig.tar.gz dpkg-source: info: unpacking lmfit-py_1.0.1-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deactivate_test.patch dpkg-source: info: applying no_jupyter_sphinx.execute.patch dpkg-source: info: applying fake_README.txt.patch dpkg-source: info: applying exclude_failing_test.patch dpkg-source: info: applying python3.9.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/lmfit-py-pa8xmR/lmfit-py-1.0.1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1620289960" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.Ju434j6TGt dpkg-buildpackage: info: source package lmfit-py dpkg-buildpackage: info: source version 1.0.1-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Graham Inggs dpkg-source --before-build . debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean --test-pytest -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars debian/files rm -fr -- debian/python3-lmfit/ debian/tmp/ debian/python-lmfit-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-indep dh binary-indep --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild pybuild --configure --test-pytest -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -i -O--buildsystem=pybuild pybuild --build --test-pytest -i python{version} -p 3.9 I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/jsonutils.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/lineshapes.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/__init__.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/confidence.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/parameter.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/models.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/_version.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/_ampgo.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/printfuncs.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/model.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit copying lmfit/minimizer.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit UPDATING /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/_version.py set /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/_version.py to '1.0.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/lmfit-py-pa8xmR/lmfit-py-1.0.1' dh_auto_test pybuild --test --test-pytest -i python{version} -p 3.9 I: pybuild pybuild:284: cp -r NIST_STRD examples /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build I: pybuild base:232: cd /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build; python3.9 -m pytest -k 'not speed and not test_model_nan_policy' ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1 collected 525 items / 3 deselected / 522 selected tests/test_1variable.py . [ 0%] tests/test_NIST_Strd.py ........................... [ 5%] tests/test_algebraic_constraint.py .... [ 6%] tests/test_ampgo.py ............ [ 8%] tests/test_basicfit.py . [ 8%] tests/test_basinhopping.py ..... [ 9%] tests/test_bounded_jacobian.py . [ 9%] tests/test_bounds.py . [ 9%] tests/test_brute.py ............ [ 12%] tests/test_builtin_models.py ..... [ 13%] tests/test_confidence.py ............. [ 15%] tests/test_covariance_matrix.py ..ssssssss [ 17%] tests/test_custom_independentvar.py . [ 17%] tests/test_default_kws.py . [ 18%] tests/test_dual_annealing.py ... [ 18%] tests/test_itercb.py ....... [ 19%] tests/test_jsonutils.py ................ [ 22%] tests/test_least_squares.py ..... [ 23%] tests/test_lineshapes.py ............................................... [ 32%] ........................ [ 37%] tests/test_max_nfev.py ...x.................x.x... [ 42%] tests/test_minimizer.py . [ 42%] tests/test_model.py .................................................... [ 52%] ......................s....s.......................................... [ 66%] tests/test_model_uncertainties.py .... [ 67%] tests/test_multidatasets.py . [ 67%] tests/test_nose.py ...............s........ [ 71%] tests/test_pandas.py . [ 72%] tests/test_parameter.py ................................................ [ 81%] .......... [ 83%] tests/test_parameters.py ............................ [ 88%] tests/test_printfuncs.py ................................. [ 94%] tests/test_saveload.py .s.s.............. [ 98%] tests/test_shgo.py ....... [ 99%] tests/test_stepmodel.py .. [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_no_ZeroDivisionError_and_finite_output[logistic] /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/lineshapes.py:184: RuntimeWarning: overflow encountered in exp return amplitude*(1. - 1./(1. + exp((x-center)/max(tiny, sigma)))) .pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_no_ZeroDivisionError_and_finite_output[thermal_distribution] /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/lineshapes.py:344: RuntimeWarning: divide by zero encountered in true_divide return real(1/(amplitude*exp((x - center)/kt) + offset + tiny*1j)) .pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_x_float_value[step] .pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_x_float_value[rectangle] <__array_function__ internals>:5: DeprecationWarning: Calling nonzero on 0d arrays is deprecated, as it behaves surprisingly. Use `atleast_1d(cond).nonzero()` if the old behavior was intended. If the context of this warning is of the form `arr[nonzero(cond)]`, just use `arr[cond]`. .pybuild/cpython3_3.9_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_diffev_bounds_check /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/minimizer.py:933: RuntimeWarning: ignoring `maxiter` argument to `scalar_minimize()`. Use `max_nfev` instead. warnings.warn(MAXEVAL_Warning % ('maxiter', thisfuncname()), -- Docs: https://docs.pytest.org/en/stable/warnings.html = 506 passed, 13 skipped, 3 deselected, 3 xfailed, 5 warnings in 222.36s (0:03:42) = I: pybuild pybuild:310: rm -fr /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/NIST_STRD /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/examples; find /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build -name "*.sav" -delete make[1]: Leaving directory '/build/lmfit-py-pa8xmR/lmfit-py-1.0.1' create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars rm -fr -- debian/.debhelper/generated/python3-lmfit/ debian/python3-lmfit/ debian/tmp/ debian/.debhelper/generated/python-lmfit-doc/ debian/python-lmfit-doc/ rm -f debian/python-lmfit-doc.debhelper.log debian/python3-lmfit.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/lmfit-py-pa8xmR/lmfit-py-1.0.1' dh_auto_install install -d /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/tmp pybuild --install --test-pytest -i python{version} -p 3.9 --dest-dir /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/tmp I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit running install running build running build_py UPDATING /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/_version.py set /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/_version.py to '1.0.1' running install_lib creating /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit creating /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr creating /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib creating /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9 creating /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages creating /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/jsonutils.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/lineshapes.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/__init__.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/confidence.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/parameter.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/models.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/_version.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/_ampgo.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit creating /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__pycache__ copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/__pycache__/minimizer.cpython-39.pyc -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__pycache__ copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/__pycache__/model.cpython-39.pyc -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__pycache__ copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/__pycache__/models.cpython-39.pyc -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__pycache__ copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/__pycache__/_version.cpython-39.pyc -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__pycache__ copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/__pycache__/confidence.cpython-39.pyc -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__pycache__ copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/__pycache__/printfuncs.cpython-39.pyc -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__pycache__ copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/__pycache__/parameter.cpython-39.pyc -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__pycache__ copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/__pycache__/__init__.cpython-39.pyc -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__pycache__ copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/__pycache__/jsonutils.cpython-39.pyc -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__pycache__ copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/__pycache__/_ampgo.cpython-39.pyc -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__pycache__ copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/__pycache__/lineshapes.cpython-39.pyc -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__pycache__ copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/printfuncs.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/model.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit copying /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/.pybuild/cpython3_3.9_lmfit/build/lmfit/minimizer.py -> /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit byte-compiling /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/jsonutils.py to jsonutils.cpython-39.pyc byte-compiling /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/lineshapes.py to lineshapes.cpython-39.pyc byte-compiling /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/__init__.py to __init__.cpython-39.pyc byte-compiling /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/confidence.py to confidence.cpython-39.pyc byte-compiling /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/parameter.py to parameter.cpython-39.pyc byte-compiling /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/models.py to models.cpython-39.pyc byte-compiling /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/_version.py to _version.cpython-39.pyc byte-compiling /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/_ampgo.py to _ampgo.cpython-39.pyc byte-compiling /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/printfuncs.py to printfuncs.cpython-39.pyc byte-compiling /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/model.py to model.cpython-39.pyc byte-compiling /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit/minimizer.py to minimizer.cpython-39.pyc running install_egg_info running egg_info writing lmfit.egg-info/PKG-INFO writing dependency_links to lmfit.egg-info/dependency_links.txt writing requirements to lmfit.egg-info/requires.txt writing top-level names to lmfit.egg-info/top_level.txt reading manifest file 'lmfit.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.txt' warning: no previously-included files found matching '*.pyc' warning: no previously-included files found matching 'core.*' warning: no previously-included files found matching '*~' warning: no previously-included files found matching '*.pdf' warning: no files found matching '*.dat' under directory 'tests' warning: no previously-included files matching '*' found under directory 'examples/documentation' warning: no previously-included files matching '*' found under directory 'doc/_build' warning: no previously-included files matching '*' found under directory 'doc/examples' warning: no previously-included files matching '*.pdf' found under directory 'doc' warning: no previously-included files matching '*.csv' found under directory 'doc' warning: no previously-included files matching '*.dat' found under directory 'doc' warning: no previously-included files matching '*.sav' found under directory 'doc' writing manifest file 'lmfit.egg-info/SOURCES.txt' Copying lmfit.egg-info to /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python3-lmfit/usr/lib/python3.9/dist-packages/lmfit-1.0.1.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 (grep -a -s -v python3:Depends debian/python3-lmfit.substvars; echo python3:Depends=python3-numpy) > debian/python3-lmfit.substvars.new mv debian/python3-lmfit.substvars.new debian/python3-lmfit.substvars (grep -a -s -v python3:Depends debian/python-lmfit-doc.substvars; echo python3:Depends=python3-numpy) > debian/python-lmfit-doc.substvars.new mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars make[1]: Leaving directory '/build/lmfit-py-pa8xmR/lmfit-py-1.0.1' rm -f debian/python-lmfit-doc.debhelper.log debian/python3-lmfit.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/lmfit-py-pa8xmR/lmfit-py-1.0.1' PYTHONPATH=. http_proxy='localhost' python3 -m sphinx -N -bhtml -D mathjax_path="/usr/share/javascript/mathjax/MathJax.js" doc/ build/html # HTML generator Running Sphinx v3.4.3 Matplotlib created a temporary config/cache directory at /tmp/matplotlib-jcgad67q because the default path (/nonexistent/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.scipy.org/doc/numpy/objects.inv... loading intersphinx inventory from https://docs.scipy.org/doc/scipy/reference/objects.inv... intersphinx inventory has moved: https://docs.scipy.org/doc/numpy/objects.inv -> https://numpy.org/doc/stable/objects.inv generating gallery... Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files. generating gallery for examples... [ 6%] example_use_pandas.py generating gallery for examples... [ 13%] example_expression_model.py generating gallery for examples... [ 20%] example_fit_with_inequality.py generating gallery for examples... [ 26%] example_diffev.py generating gallery for examples... [ 33%] example_fit_with_bounds.py generating gallery for examples... [ 40%] example_reduce_fcn.py generating gallery for examples... [ 46%] example_fit_with_algebraic_constraint.py generating gallery for examples... [ 53%] example_fit_multi_datasets.py generating gallery for examples... [ 60%] example_fit_with_derivfunc.py generating gallery for examples... [ 66%] example_Model_interface.py generating gallery for examples... [ 73%] example_detect_outliers.py generating gallery for examples... [ 80%] example_confidence_interval.py generating gallery for examples... [ 86%] example_complex_resonator_model.py generating gallery for examples... [ 93%] lmfit_emcee_model_selection.py generating gallery for examples... [100%] example_brute.py computation time summary: - ../examples/example_brute.py: 112.16 sec 0.0 MB - ../examples/example_confidence_interval.py: 58.19 sec 0.0 MB - ../examples/example_detect_outliers.py: 2.23 sec 0.0 MB - ../examples/example_diffev.py: 0.83 sec 0.0 MB - ../examples/example_complex_resonator_model.py: 0.71 sec 0.0 MB - ../examples/example_Model_interface.py: 0.52 sec 0.0 MB - ../examples/example_fit_multi_datasets.py: 0.38 sec 0.0 MB - ../examples/example_reduce_fcn.py: 0.33 sec 0.0 MB - ../examples/example_use_pandas.py: 0.33 sec 0.0 MB - ../examples/example_fit_with_algebraic_constraint.py: 0.29 sec 0.0 MB - ../examples/example_expression_model.py: 0.28 sec 0.0 MB - ../examples/example_fit_with_inequality.py: 0.28 sec 0.0 MB - ../examples/example_fit_with_bounds.py: 0.24 sec 0.0 MB - ../examples/example_fit_with_derivfunc.py: 0.20 sec 0.0 MB - ../examples/lmfit_emcee_model_selection.py: 0.00 sec 0.0 MB building [mo]: targets for 0 po files that are out of date building [html]: targets for 14 source files that are out of date updating environment: [new config] 31 added, 0 changed, 0 removed reading sources... [ 3%] bounds reading sources... [ 6%] builtin_models reading sources... [ 9%] confidence reading sources... [ 12%] constraints reading sources... [ 16%] contents reading sources... [ 19%] examples/example_Model_interface reading sources... [ 22%] examples/example_brute reading sources... [ 25%] examples/example_complex_resonator_model reading sources... [ 29%] examples/example_confidence_interval reading sources... [ 32%] examples/example_detect_outliers reading sources... [ 35%] examples/example_diffev reading sources... [ 38%] examples/example_expression_model reading sources... [ 41%] examples/example_fit_multi_datasets reading sources... [ 45%] examples/example_fit_with_algebraic_constraint reading sources... [ 48%] examples/example_fit_with_bounds reading sources... [ 51%] examples/example_fit_with_derivfunc reading sources... [ 54%] examples/example_fit_with_inequality reading sources... [ 58%] examples/example_reduce_fcn reading sources... [ 61%] examples/example_use_pandas reading sources... [ 64%] examples/index reading sources... [ 67%] examples/lmfit_emcee_model_selection reading sources... [ 70%] examples/sg_execution_times reading sources... [ 74%] faq reading sources... [ 77%] fitting reading sources... [ 80%] index reading sources... [ 83%] installation reading sources... [ 87%] intro reading sources... [ 90%] model reading sources... [ 93%] parameters reading sources... [ 96%] support reading sources... [100%] whatsnew /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:306: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from numpy import loadtxt from lmfit.models import GaussianModel data = loadtxt('test_peak.dat') x = data[:, 0] y = data[:, 1] mod = GaussianModel() pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:326: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report(min_correl=0.25)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:337: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import matplotlib as mpl mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' import matplotlib.pyplot as plt plt.plot(x, y, 'b-') plt.plot(x, out.best_fit, 'r-', label='Gaussian Model') plt.legend(loc='best') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:358: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import LorentzianModel mod = LorentzianModel() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:366: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:375: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'b-') plt.plot(x, out.best_fit, 'r-', label='Lorentzian Model') plt.legend(loc='best') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:386: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import VoigtModel mod = VoigtModel() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:393: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:404: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'b-') axes[0].plot(x, out.best_fit, 'r-', label='Voigt Model\ngamma constrained') axes[0].legend(loc='best') # free gamma parameter pars['gamma'].set(value=0.7, vary=True, expr='') out_gamma = mod.fit(y, pars, x=x) axes[1].plot(x, y, 'b-') axes[1].plot(x, out_gamma.best_fit, 'r-', label='Voigt Model\ngamma unconstrained') axes[1].legend(loc='best') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:435: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out_gamma.fit_report(min_correl=0.25)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:472: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_stepmodel.py :hide-output: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:483: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:490: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'b') plt.plot(x, out.init_fit, 'k--', label='initial fit') plt.plot(x, out.best_fit, 'r-', label='best fit') plt.legend(loc='best') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:513: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss.py :hide-output: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:529: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:540: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'b') axes[0].plot(x, init, 'k--', label='initial fit') axes[0].plot(x, out.best_fit, 'r-', label='best fit') axes[0].legend(loc='best') comps = out.eval_components(x=x) axes[1].plot(x, y, 'b') axes[1].plot(x, comps['g1_'], 'g--', label='Gaussian component 1') axes[1].plot(x, comps['g2_'], 'm--', label='Gaussian component 2') axes[1].plot(x, comps['exp_'], 'k--', label='Exponential component') axes[1].legend(loc='best') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:581: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss2.py :hide-code: :hide-output: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:587: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'b') plt.plot(x, out.init_fit, 'k--', label='initial fit') plt.plot(x, out.best_fit, 'r-', label='best fit') plt.legend(loc='best') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/builtin_models.rst:601: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/confidence.rst:45: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np import lmfit x = np.linspace(0.3, 10, 100) np.random.seed(0) y = 1/(0.1*x) + 2 + 0.1*np.random.randn(x.size) pars = lmfit.Parameters() pars.add_many(('a', 0.1), ('b', 1)) def residual(p): return 1/(p['a']*x) + p['b'] - y /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/confidence.rst:66: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mini = lmfit.Minimizer(residual, pars) result = mini.minimize() print(lmfit.fit_report(result.params)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/confidence.rst:76: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ci = lmfit.conf_interval(mini, result) lmfit.printfuncs.report_ci(ci) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/confidence.rst:103: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: for p in result.params: result.params[p].stderr = abs(result.params[p].value * 0.1) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/confidence.rst:124: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import warnings warnings.filterwarnings(action="ignore") import matplotlib as mpl import matplotlib.pyplot as plt mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/confidence.rst:135: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_confidence_advanced.py :hide-output: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/confidence.rst:140: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: lmfit.report_fit(out2.params, min_correl=0.5) print('') lmfit.printfuncs.report_ci(ci) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/confidence.rst:157: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a1', 't2', 30, 30) ctp = axes[0].contourf(cx, cy, grid, np.linspace(0, 1, 11)) fig.colorbar(ctp, ax=axes[0]) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a2', 't2', 30, 30) ctp = axes[1].contourf(cx, cy, grid, np.linspace(0, 1, 11)) fig.colorbar(ctp, ax=axes[1]) axes[1].set_xlabel('a2') axes[1].set_ylabel('t2') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/confidence.rst:191: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob'] cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob'] axes[0].scatter(cx1, cy1, c=prob, s=30) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') axes[1].scatter(cx2, cy2, c=prob2, s=30) axes[1].set_xlabel('t2') axes[1].set_ylabel('a1') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/confidence.rst:210: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob'] cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob'] axes[0].scatter(cx1, cy1, c=prob, s=30) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') axes[1].scatter(cx2, cy2, c=prob2, s=30) axes[1].set_xlabel('t2') axes[1].set_ylabel('a1') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:414: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_fitting_withreport.py :hide-output: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:419: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(fit_report(out)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:428: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('-------------------------------') print('Parameter Value Stderr') for name, param in out.params.items(): print('{:7s} {:11.5f} {:11.5f}'.format(name, param.value, param.stderr)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:536: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import warnings warnings.filterwarnings(action="ignore") import matplotlib as mpl import matplotlib.pyplot as plt mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:549: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: import matplotlib.pyplot as plt import numpy as np import lmfit x = np.linspace(1, 10, 250) np.random.seed(0) y = 3.0 * np.exp(-x / 2) - 5.0 * np.exp(-(x - 0.1) / 10.) + 0.1 * np.random.randn(x.size) plt.plot(x, y, 'b') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:564: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: p = lmfit.Parameters() p.add_many(('a1', 4.), ('a2', 4.), ('t1', 3.), ('t2', 3., True)) def residual(p): v = p.valuesdict() return v['a1'] * np.exp(-x / v['t1']) + v['a2'] * np.exp(-(x - 0.1) / v['t2']) - y /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:578: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mi = lmfit.minimize(residual, p, method='nelder', nan_policy='omit') lmfit.printfuncs.report_fit(mi.params, min_correl=0.5) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:585: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: plt.plot(x, y, 'b') plt.plot(x, residual(mi.params) + y, 'r', label='best fit') plt.legend(loc='best') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:612: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: mi.params.add('__lnsigma', value=np.log(0.1), min=np.log(0.001), max=np.log(2)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:619: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: res = lmfit.minimize(residual, method='emcee', nan_policy='omit', burn=300, steps=1000, thin=20, params=mi.params, is_weighted=False, progress=False) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:638: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: plt.plot(res.acceptance_fraction) plt.xlabel('walker') plt.ylabel('acceptance fraction') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:648: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: import corner emcee_plot = corner.corner(res.flatchain, labels=res.var_names, truths=list(res.params.valuesdict().values())) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:660: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('median of posterior probability distribution') print('--------------------------------------------') lmfit.report_fit(res.params) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:681: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: highest_prob = np.argmax(res.lnprob) hp_loc = np.unravel_index(highest_prob, res.lnprob.shape) mle_soln = res.chain[hp_loc] for i, par in enumerate(p): p[par].value = mle_soln[i] print('\nMaximum Likelihood Estimation from emcee ') print('-------------------------------------------------') print('Parameter MLE Value Median Value Uncertainty') fmt = ' {:5s} {:11.5f} {:11.5f} {:11.5f}'.format for name, param in p.items(): print(fmt(name, param.value, res.params[name].value, res.params[name].stderr)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/fitting.rst:705: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('\nError Estimates from emcee ') print('------------------------------------------------------') print('Parameter -2sigma -1sigma median +1sigma +2sigma ') for name in p.keys(): quantiles = np.percentile(res.flatchain[name], [2.275, 15.865, 50, 84.135, 97.275]) median = quantiles[2] err_m2 = quantiles[0] - median err_m1 = quantiles[1] - median err_p1 = quantiles[3] - median err_p2 = quantiles[4] - median fmt = ' {:5s} {:8.4f} {:8.4f} {:8.4f} {:8.4f} {:8.4f}'.format print(fmt(name, err_m2, err_m1, median, err_p1, err_p2)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:49: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import matplotlib as mpl mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:57: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, linspace, random def gaussian(x, amp, cen, wid): return amp * exp(-(x-cen)**2 / wid) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:67: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from scipy.optimize import curve_fit x = linspace(-10, 10, 101) y = gaussian(x, 2.33, 0.21, 1.51) + random.normal(0, 0.2, x.size) init_vals = [1, 0, 1] # for [amp, cen, wid] best_vals, covar = curve_fit(gaussian, x, y, p0=init_vals) print('best_vals: {}'.format(best_vals)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:89: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Model gmodel = Model(gaussian) print('parameter names: {}'.format(gmodel.param_names)) print('independent variables: {}'.format(gmodel.independent_vars)) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:157: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_gaussian.py :hide-output: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:164: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:174: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'bo') plt.plot(x, result.init_fit, 'k--', label='initial fit') plt.plot(x, result.best_fit, 'r-', label='best fit') plt.legend(loc='best') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:307: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np from lmfit import Model def decay(t, tau, N): return N*np.exp(-t/tau) decay_model = Model(decay) print('independent variables: {}'.format(decay_model.independent_vars)) params = decay_model.make_params() print('\nParameters:') for pname, par in params.items(): print(pname, par) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:332: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: decay_model = Model(decay, independent_vars=['tau']) print('independent variables: {}'.format(decay_model.independent_vars)) params = decay_model.make_params() print('\nParameters:') for pname, par in params.items(): print(pname, par) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:364: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: def decay2(t, tau, N=10, check_positive=False): if check_small: arg = abs(t)/max(1.e-9, abs(tau)) else: arg = t/tau return N*np.exp(arg) mod = Model(decay2) params = mod.make_params() print('Parameters:') for pname, par in params.items(): print(pname, par) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:400: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, amplitude=1, center=0, sigma=1): # function definition, for now just ``pass`` pass mod = Model(myfunc, prefix='f1_') params = mod.make_params() print('Parameters:') for pname, par in params.items(): print(pname, par) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:583: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_savemodel.py /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:587: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_loadmodel.py :hide-output: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:792: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_gaussian.py :hide-output: :hide-code: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:796: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: dely = result.eval_uncertainty(sigma=3) plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB", label='3-$\sigma$ uncertainty band') /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:807: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'bo') plt.plot(x, result.init_fit, 'k--', label='initial fit') plt.plot(x, result.best_fit, 'r-', label='best fit') plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB", label='3-$\sigma$ uncertainty band') plt.legend(loc='best') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:846: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_savemodelresult.py :hide-output: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:851: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_loadmodelresult.py :hide-output: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:901: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_two_components.py :hide-output: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:906: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:914: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'bo') axes[0].plot(x, result.init_fit, 'k--', label='initial fit') axes[0].plot(x, result.best_fit, 'r-', label='best fit') axes[0].legend(loc='best') comps = result.eval_components() axes[1].plot(x, y, 'bo') axes[1].plot(x, comps['gaussian'], 'k--', label='Gaussian component') axes[1].plot(x, comps['line'], 'r--', label='Line component') axes[1].legend(loc='best') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:999: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_composite.py :hide-output: /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:1004: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/model.rst:1011: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'bo') axes[0].plot(x, result.init_fit, 'k--', label='initial fit') axes[0].plot(x, result.best_fit, 'r-', label='best fit') axes[0].legend(loc='best') axes[1].plot(x, y, 'bo') axes[1].plot(x, 10*comps['jump'], 'k--', label='Jump component') axes[1].plot(x, 10*comps['gaussian'], 'r-', label='Gaussian component') axes[1].legend(loc='best') plt.show() /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/doc/parameters.rst:91: WARNING: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_parameters_basic.py :hide-output: 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[100%] sg_execution_times.html dh_installdocs -i install -d debian/python3-lmfit/usr/share/doc/python3-lmfit install -d debian/.debhelper/generated/python3-lmfit install -p -m0644 debian/copyright debian/python3-lmfit/usr/share/doc/python3-lmfit/copyright install -d debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc install -d debian/.debhelper/generated/python-lmfit-doc install -p -m0644 debian/copyright debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/copyright dh_installdocs build/html -p python-lmfit-doc --doc-main-package=python3-lmfit install -d debian/python-lmfit-doc/usr/share/doc/python3-lmfit cd 'build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/lmfit-py-pa8xmR/lmfit-py-1.0.1/debian/python-lmfit-doc/usr/share/doc/python3-lmfit chmod -R u\+rw,go=rX debian/python-lmfit-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/copyright make[1]: Leaving directory '/build/lmfit-py-pa8xmR/lmfit-py-1.0.1' dh_sphinxdoc -i -O--buildsystem=pybuild ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js ln -sf ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/underscore.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js ln -sf ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/jquery.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js rm -rf debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/.doctrees rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/.buildinfo (grep -a -s -v sphinxdoc:Depends debian/python-lmfit-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 1.8)") > debian/python-lmfit-doc.substvars.new mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars (grep -a -s -v sphinxdoc:Depends debian/python-lmfit-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 1.8), libjs-sphinxdoc (>= 2.4.3-5~)") > debian/python-lmfit-doc.substvars.new mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars (grep -a -s -v sphinxdoc:Depends debian/python-lmfit-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 1.0), libjs-sphinxdoc (>= 1.8), libjs-sphinxdoc (>= 2.4.3-5~)") > debian/python-lmfit-doc.substvars.new mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars (grep -a -s -v sphinxdoc:Depends debian/python-lmfit-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 1.0), libjs-sphinxdoc (>= 1.8), libjs-sphinxdoc (>= 2.0), libjs-sphinxdoc (>= 2.4.3-5~)") > debian/python-lmfit-doc.substvars.new mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars (grep -a -s -v sphinxdoc:Built-Using debian/python-lmfit-doc.substvars; echo "sphinxdoc:Built-Using=sphinx (= 3.4.3-2)") > debian/python-lmfit-doc.substvars.new mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars dh_installchangelogs -i -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python3-lmfit/usr/share/doc/python3-lmfit/changelog.Debian install -p -m0644 debian/changelog debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/changelog.Debian dh_python3 -i -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20201102+nmu1 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-i', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': False, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9) D: dh_python3 debhelper:107: skipping package: python-lmfit-doc D: dh_python3 debhelper:152: source=lmfit-py, binary packages=['python3-lmfit'] D: dh_python3 dh_python3:183: processing package python3-lmfit... D: dh_python3 fs:49: moving files from debian/python3-lmfit/usr/lib/python3.9/dist-packages to debian/python3-lmfit/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-lmfit details = {'requires.txt': {'debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-1.0.1.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-lmfit D: dh_python3 pydist:142: trying to find dependency for asteval>=0.9.16 (python=None) D: dh_python3 pydist:142: trying to find dependency for numpy>=1.16 (python=None) D: dh_python3 pydist:142: trying to find dependency for scipy>=1.2 (python=None) D: dh_python3 pydist:142: trying to find dependency for uncertainties>=3.0.1 (python=None) D: dh_python3 depends:275: D={'python3-uncertainties (>= 3.0.2.github~)', 'python3-numpy', 'python3:any', 'python3-asteval', 'python3-scipy'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installinit -i -O--buildsystem=pybuild dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/underscore.js ln -s ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/underscore.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/jquery.js ln -s ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/jquery.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js dh_strip_nondeterminism -i -O--buildsystem=pybuild Using 1620289960 as canonical time Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/navigation.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/broken_example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/no_image.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/contents.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_diffev_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_lmfit_emcee_model_selection_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_004.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_diffev_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_002.png using File::StripNondeterminism::handlers::png dh_compress -i -O--buildsystem=pybuild cd debian/python3-lmfit cd debian/python-lmfit-doc chmod a-x usr/share/doc/python3-lmfit/changelog.Debian gzip -9nf usr/share/doc/python3-lmfit/changelog.Debian cd '/build/lmfit-py-pa8xmR/lmfit-py-1.0.1' chmod a-x usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb gzip -9nf usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb cd '/build/lmfit-py-pa8xmR/lmfit-py-1.0.1' dh_fixperms -i -O--buildsystem=pybuild find debian/python3-lmfit ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-lmfit-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-lmfit/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-lmfit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-lmfit-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-lmfit-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-lmfit/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-lmfit-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-lmfit -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-lmfit/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-lmfit-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild install -d debian/python3-lmfit/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/postinst cat debian/python3-lmfit.postinst.debhelper >> debian/python3-lmfit/DEBIAN/postinst chmod 0755 -- debian/python3-lmfit/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/prerm cat debian/python3-lmfit.prerm.debhelper >> debian/python3-lmfit/DEBIAN/prerm chmod 0755 -- debian/python3-lmfit/DEBIAN/prerm install -d debian/python-lmfit-doc/DEBIAN dh_gencontrol -i -O--buildsystem=pybuild echo misc:Depends= >> debian/python3-lmfit.substvars echo misc:Pre-Depends= >> debian/python3-lmfit.substvars dpkg-gencontrol -ppython3-lmfit -ldebian/changelog -Tdebian/python3-lmfit.substvars -Pdebian/python3-lmfit echo misc:Depends= >> debian/python-lmfit-doc.substvars echo misc:Pre-Depends= >> debian/python-lmfit-doc.substvars dpkg-gencontrol -ppython-lmfit-doc -ldebian/changelog -Tdebian/python-lmfit-doc.substvars -Pdebian/python-lmfit-doc dpkg-gencontrol: warning: package python-lmfit-doc: substitution variable ${python3:Depends} unused, but is defined chmod 0644 -- debian/python-lmfit-doc/DEBIAN/control chmod 0644 -- debian/python3-lmfit/DEBIAN/control dh_md5sums -i -O--buildsystem=pybuild cd debian/python-lmfit-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-lmfit >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-lmfit/DEBIAN/md5sums chmod 0644 -- debian/python-lmfit-doc/DEBIAN/md5sums dh_builddeb -i -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-lmfit .. dpkg-deb --root-owner-group --build debian/python-lmfit-doc .. dpkg-deb: building package 'python-lmfit-doc' in '../python-lmfit-doc_1.0.1-6_all.deb'. dpkg-deb: building package 'python3-lmfit' in '../python3-lmfit_1.0.1-6_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../lmfit-py_1.0.1-6_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/lmfit-py-pa8xmR /tmp/lmfit-py-1.0.1-61gl9twbr I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.Ju434j6TGt... I: success in 906.1921 seconds md5: Value of 'md5' differs for python-lmfit-doc_1.0.1-6_all.deb md5: Size differs for python-lmfit-doc_1.0.1-6_all.deb md5: python3-lmfit_1.0.1-6_all.deb: OK sha1: Value of 'sha1' differs for python-lmfit-doc_1.0.1-6_all.deb sha1: Size differs for python-lmfit-doc_1.0.1-6_all.deb sha1: python3-lmfit_1.0.1-6_all.deb: OK sha256: Value of 'sha256' differs for python-lmfit-doc_1.0.1-6_all.deb sha256: Size differs for python-lmfit-doc_1.0.1-6_all.deb sha256: python3-lmfit_1.0.1-6_all.deb: OK Checksums: FAIL diffoscope run passed