Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/l/liggghts/liggghts_3.8.0+repack1-9_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/liggghts-3.8.0+repack1-9p03gcg9o/liggghts_3.8.0+repack1-9_all.buildinfo Get source package info: liggghts=3.8.0+repack1-9 Source URL: http://snapshot.notset.fr/mr/package/liggghts/3.8.0+repack1-9/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.71-2 automake=1:1.16.4-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3+b2 binutils=2.37-7 binutils-common=2.37-7 binutils-x86-64-linux-gnu=2.37-7 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-3 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20211016 ca-certificates-java=20190909 cmake=3.21.3-4 cmake-data=3.21.3-4 coreutils=8.32-4+b1 cpp=4:11.2.0-2 cpp-10=10.3.0-11 cpp-11=11.2.0-9 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.2 debianutils=5.5-1 default-jdk=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 default-libmysqlclient-dev=1.0.7 dh-autoreconf=20 dh-elpa-helper=2.0.9 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.39-3 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:11.2.0-2 g++-11=11.2.0-9 gcc=4:11.2.0-2 gcc-10=10.3.0-11 gcc-10-base=10.3.0-11 gcc-11=11.2.0-9 gcc-11-base=11.2.0-9 gdal-data=3.3.2+dfsg-2 gettext=0.21-4 gettext-base=0.21-4 gfortran-10=10.3.0-11 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hostname=3.23 ibverbs-providers=36.0-1 icu-devtools=67.1-7 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 java-common=0.72 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libaom-dev=1.0.0.errata1-3 libaom0=1.0.0.errata1-3 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2+b1 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libsystemd0=249.5-1 libsz2=1.0.6-1 libtasn1-6=4.17.0-2 libtbb-dev=2020.3-1 libtbb2=2020.3-1 libtcl8.6=8.6.11+dfsg-1 libthai-data=0.1.28-4.1 libthai0=0.1.28-4.1 libtheora-dev=1.1.1+dfsg.1-15 libtheora0=1.1.1+dfsg.1-15 libtiff-dev=4.3.0-2 libtiff5=4.3.0-2 libtiffxx5=4.3.0-2 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtk8.6=8.6.11.1-1 libtool=2.4.6-15 libtsan0=11.2.0-9 libtwolame0=0.4.0-2 libubsan1=11.2.0-9 libuchardet0=0.0.7-1 libucx0=1.11.2-1 libudev1=249.5-1 libudfread0=1.1.2-1 libunistring2=0.9.10-6 liburiparser-dev=0.9.5+dfsg-2 liburiparser1=0.9.5+dfsg-2 libutfcpp-dev=3.2.1-2 libuuid1=2.37.2-4 libuv1=1.42.0-1 libva-drm2=2.13.0-1 libva-x11-2=2.13.0-1 libva2=2.13.0-1 libvdpau1=1.4-3 libvorbis0a=1.3.7-1 libvorbisenc2=1.3.7-1 libvorbisfile3=1.3.7-1 libvpx6=1.10.0-2 libvtk9=9.0.3+dfsg1-3 libvtk9-dev=9.0.3+dfsg1-3 libvtk9-java=9.0.3+dfsg1-3 libvtk9-qt=9.0.3+dfsg1-3 libvulkan1=1.2.189.0-2 libwacom-common=1.11-1 libwacom2=1.11-1 libwayland-client0=1.19.0-2+b1 libwayland-server0=1.19.0-2+b1 libwebp-dev=0.6.1-2.1 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libx11-dev=2:1.7.2-2+b1 libx11-xcb1=2:1.7.2-2+b1 libx264-160=2:0.160.3011+gitcde9a93-2.1 libx265-199=3.5-2 libx265-dev=3.5-2 libxau-dev=1:1.0.9-1 libxau6=1:1.0.9-1 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-icccm4=0.4.1-1.1 libxcb-image0=0.4.0-1+b3 libxcb-keysyms1=0.4.0-1+b2 libxcb-present0=1.14-3 libxcb-randr0=1.14-3 libxcb-render-util0=0.3.9-1+b1 libxcb-render0=1.14-3 libxcb-shape0=1.14-3 libxcb-shm0=1.14-3 libxcb-sync1=1.14-3 libxcb-util1=0.4.0-1+b1 libxcb-xfixes0=1.14-3 libxcb-xinerama0=1.14-3 libxcb-xinput0=1.14-3 libxcb-xkb1=1.14-3 libxcb1=1.14-3 libxcb1-dev=1.14-3 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxerces-c-dev=3.2.3+debian-3 libxerces-c3.2=3.2.3+debian-3 libxext-dev=2:1.3.4-1 libxext6=2:1.3.4-1 libxfixes3=1:5.0.3-2 libxft-dev=2.3.2-2 libxft2=2.3.2-2 libxi6=2:1.8-1 libxkbcommon-x11-0=1.0.3-2 libxkbcommon0=1.0.3-2 libxml2=2.9.12+dfsg-5 libxml2-dev=2.9.12+dfsg-5 libxnvctrl0=470.57.02-2 libxrender-dev=1:0.9.10-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxss-dev=1:1.2.3-1 libxss1=1:1.2.3-1 libxt-dev=1:1.2.0-1 libxt6=1:1.2.0-1 libxtst6=2:1.2.3-1 libxvidcore4=2:1.3.7-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.12-1+b1 libzmq5=4.3.4-1 libzstd-dev=1.4.8+dfsg-3 libzstd1=1.4.8+dfsg-3 libzvbi-common=0.2.35-18 libzvbi0=0.2.35-18 linux-libc-dev=5.14.12-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mariadb-common=1:10.5.12-1 mawk=1.3.4.20200120-2 media-types=4.0.0 mpi-default-bin=1.14 mpi-default-dev=1.14 mysql-common=5.8+1.0.7 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 ocl-icd-libopencl1=2.2.14-3 odbcinst=2.3.6-0.1+b1 odbcinst1debian2=2.3.6-0.1+b1 openjdk-11-jdk=11.0.12+7-2 openjdk-11-jdk-headless=11.0.12+7-2 openjdk-11-jre=11.0.12+7-2 openjdk-11-jre-headless=11.0.12+7-2 openmpi-bin=4.1.2~rc1-4 openmpi-common=4.1.2~rc1-4 openssh-client=1:8.4p1-6 openssl=1.1.1l-1 passwd=1:4.8.1-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 proj-data=7.2.1-1 python3=3.9.2-3 python3-minimal=3.9.2-3 python3-mpi4py=3.1.1-8 python3-vtk9=9.0.3+dfsg1-3 python3.9=3.9.7-4 python3.9-minimal=3.9.7-4 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 shared-mime-info=2.0-1 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 tcl=8.6.11+1 tcl-dev=8.6.11+1 tcl8.6=8.6.11+dfsg-1 tcl8.6-dev=8.6.11+dfsg-1 tk=8.6.11+1 tk-dev=8.6.11+1 tk8.6=8.6.11.1-1 tk8.6-dev=8.6.11.1-1 tzdata=2021c-3 ucf=3.0043 unixodbc-dev=2.3.6-0.1+b1 util-linux=2.37.2-3 uuid-dev=2.37.2-4 vtk9=9.0.3+dfsg1-3 x11-common=1:7.7+23 x11proto-dev=2021.5-1 xkb-data=2.33-1 xorg-sgml-doctools=1:1.11-1.1 xtrans-dev=1.4.0-1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211022T024712Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211022T024712Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211020T084456Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211017T204121Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d liggghts=3.8.0+repack1-9 && mkdir -p /build/liggghts-EmCuXO && dpkg-source --no-check -x /*.dsc /build/liggghts-EmCuXO/liggghts-3.8.0+repack1 && chown -R builduser:builduser /build/liggghts-EmCuXO" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634669393" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/liggghts-EmCuXO /tmp/liggghts-3.8.0+repack1-9p03gcg9o bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211017T204121Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.rXsugaidoQ as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.rXsugaidoQ Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-3). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211017T204121Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211017T204121Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1035 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4667 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211022T024712Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211022T024712Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211020T084456Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211017T204121Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.rXsugaidoQ Get:1 http://snapshot.notset.fr/archive/debian/20211022T024712Z bookworm InRelease [128 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211020T084456Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20211017T204121Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20211022T024712Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211022T024712Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211022T024712Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211022T024712Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211022T024712Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211022T024712Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20211022T024712Z bookworm/main Sources [11.7 MB] Get:5 http://snapshot.notset.fr/archive/debian/20211022T024712Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211020T084456Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20211020T084456Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20211020T084456Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211020T084456Z unstable/main amd64 Packages [11.9 MB] Fetched 35.1 MB in 29s (1206 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.rXsugaidoQ I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d liggghts=3.8.0+repack1-9 && mkdir -p /build/liggghts-EmCuXO && dpkg-source --no-check -x /*.dsc /build/liggghts-EmCuXO/liggghts-3.8.0+repack1 && chown -R builduser:builduser /build/liggghts-EmCuXO"' exec /tmp/mmdebstrap.rXsugaidoQ Reading package lists... NOTICE: 'liggghts' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/liggghts.git Please use: git clone https://salsa.debian.org/science-team/liggghts.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6558 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211022T024712Z bookworm/main liggghts 3.8.0+repack1-9 (dsc) [2281 B] Get:2 http://snapshot.notset.fr/archive/debian/20211022T024712Z bookworm/main liggghts 3.8.0+repack1-9 (tar) [6545 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211022T024712Z bookworm/main liggghts 3.8.0+repack1-9 (diff) [10.8 kB] Fetched 6558 kB in 5s (1262 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'liggghts_3.8.0+repack1-9.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting liggghts in /build/liggghts-EmCuXO/liggghts-3.8.0+repack1 dpkg-source: info: unpacking liggghts_3.8.0+repack1.orig.tar.xz dpkg-source: info: unpacking liggghts_3.8.0+repack1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_add_cmake_files.patch dpkg-source: info: applying 10_fix_gcc-11_FTBFS.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634669393" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.rXsugaidoQ dpkg-buildpackage: info: source package liggghts dpkg-buildpackage: info: source version 3.8.0+repack1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Anton Gladky dpkg-source --before-build . debian/rules clean dh clean --buildsystem=cmake --builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build dh_auto_clean -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_autoreconf_clean -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_clean -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build debian/rules binary-indep dh binary-indep --buildsystem=cmake --builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build dh_update_autotools_config -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_autoreconf -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_auto_configure -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build cd debian/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ../.. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (PkgConfig) does not match the name of the calling package (MPI). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): /usr/share/cmake-3.21/Modules/FindPkgConfig.cmake:70 (find_package_handle_standard_args) /usr/share/cmake-3.21/Modules/FindMPI.cmake:270 (include) /usr/share/cmake-3.21/Modules/CMakeFindDependencyMacro.cmake:47 (find_package) /usr/lib/x86_64-linux-gnu/cmake/boost_mpi-1.74.0/boost_mpi-config.cmake:116 (find_dependency) /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake:141 (find_package) /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake:258 (boost_find_component) /usr/share/cmake-3.21/Modules/FindBoost.cmake:594 (find_package) CMakeLists.txt:21 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0") found components: mpi serialization -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.9.so (found version "3.9.7") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE CMake Warning (dev) at /usr/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (PkgConfig) does not match the name of the calling package (MPI). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): /usr/share/cmake-3.21/Modules/FindPkgConfig.cmake:70 (find_package_handle_standard_args) /usr/share/cmake-3.21/Modules/FindMPI.cmake:270 (include) /usr/lib/x86_64-linux-gnu/cmake/vtk-9.0/VTK-vtk-module-find-packages.cmake:397 (find_package) /usr/lib/x86_64-linux-gnu/cmake/vtk-9.0/vtk-config.cmake:131 (include) CMakeLists.txt:28 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: C -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found EXPAT: /usr/lib/x86_64-linux-gnu/libexpat.so (found version "2.4.1") -- Found double-conversion: /usr/lib/x86_64-linux-gnu/libdouble-conversion.so -- Found LZ4: /usr/lib/x86_64-linux-gnu/liblz4.so (found version "1.9.3") -- Found LZMA: /usr/lib/x86_64-linux-gnu/liblzma.so (found version "5.2.5") -- Found utf8cpp: /usr/include/utf8cpp -- Found VTK -- Found Eigen3 -- Found JPEG: /usr/lib/x86_64-linux-gnu/libjpeg.so (found version "62") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build dh_auto_build -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build cd debian/build && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' /usr/bin/cmake -S/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -B/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/CMakeFiles /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/GenerateHeaders.dir/build.make src/CMakeFiles/GenerateHeaders.dir/depend make[3]: Entering directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/liggghts-EmCuXO/liggghts-3.8.0+repack1 /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src/CMakeFiles/GenerateHeaders.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/GenerateHeaders.dir/build.make src/CMakeFiles/GenerateHeaders.dir/build make[3]: Entering directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src && sh Make.sh style cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src && sh Make.sh models Generating model list, this could take a moment... You have 3240 model combinations. (limit = 1200) Some model combinations are skipped automatically. You may add missing combinations by yourself to 'style_contact_model_user.whitelist'. Creating list of contact models completed. make[3]: Leaving directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' [ 0%] Built target GenerateHeaders make -f src/CMakeFiles/libliggghts.dir/build.make src/CMakeFiles/libliggghts.dir/depend make[3]: Entering directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/liggghts-EmCuXO/liggghts-3.8.0+repack1 /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src/CMakeFiles/libliggghts.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/libliggghts.dir/build.make src/CMakeFiles/libliggghts.dir/build make[3]: Entering directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' [ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/angle_hybrid.cpp.o [ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/atom.cpp.o [ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/angle.cpp.o [ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_atomic.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/angle_hybrid.cpp.o -MF CMakeFiles/libliggghts.dir/angle_hybrid.cpp.o.d -o CMakeFiles/libliggghts.dir/angle_hybrid.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/angle_hybrid.cpp cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom.cpp.o -MF CMakeFiles/libliggghts.dir/atom.cpp.o.d -o CMakeFiles/libliggghts.dir/atom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom.cpp [ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/angle.cpp.o -MF CMakeFiles/libliggghts.dir/angle.cpp.o.d -o CMakeFiles/libliggghts.dir/angle.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/angle.cpp [ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_map.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec_atomic.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec_atomic.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec_atomic.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_atomic.cpp [ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_map.cpp.o -MF CMakeFiles/libliggghts.dir/atom_map.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_map.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_map.cpp cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec.cpp cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_ellipsoid.cpp [ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_charge.cpp.o [ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_full.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec_charge.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec_charge.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec_charge.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_charge.cpp cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec_full.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec_full.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec_full.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_full.cpp [ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_hybrid.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec_hybrid.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec_hybrid.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec_hybrid.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_hybrid.cpp [ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_line.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/angle_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/angle_hybrid.cpp:363:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 363 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/angle_hybrid.cpp:372:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/angle_hybrid.cpp:375:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 375 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_molecular.cpp [ 4%] 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/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_sph.cpp [ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sph_var.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec_sph_var.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec_sph_var.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec_sph_var.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_sph_var.cpp [ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sphere.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec_sphere.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec_sphere.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec_sphere.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_sphere.cpp [ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_sphere_w.cpp [ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_superquadric.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec_superquadric.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec_superquadric.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec_superquadric.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_superquadric.cpp [ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_tri.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/atom_vec_tri.cpp.o -MF CMakeFiles/libliggghts.dir/atom_vec_tri.cpp.o.d -o CMakeFiles/libliggghts.dir/atom_vec_tri.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom_vec_tri.cpp [ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/bond.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/bond.cpp.o -MF CMakeFiles/libliggghts.dir/bond.cpp.o.d -o CMakeFiles/libliggghts.dir/bond.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/bond.cpp [ 6%] Building CXX object src/CMakeFiles/libliggghts.dir/bond_harmonic.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/bond_harmonic.cpp.o -MF CMakeFiles/libliggghts.dir/bond_harmonic.cpp.o.d -o CMakeFiles/libliggghts.dir/bond_harmonic.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/bond_harmonic.cpp [ 6%] Building CXX object src/CMakeFiles/libliggghts.dir/bond_hybrid.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/bond_hybrid.cpp.o -MF CMakeFiles/libliggghts.dir/bond_hybrid.cpp.o.d -o CMakeFiles/libliggghts.dir/bond_hybrid.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/bond_hybrid.cpp [ 6%] Building CXX object src/CMakeFiles/libliggghts.dir/bounding_box.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/bounding_box.cpp.o -MF CMakeFiles/libliggghts.dir/bounding_box.cpp.o.d -o CMakeFiles/libliggghts.dir/bounding_box.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/bounding_box.cpp [ 7%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_datacoupling.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/cfd_datacoupling.cpp.o -MF CMakeFiles/libliggghts.dir/cfd_datacoupling.cpp.o.d -o CMakeFiles/libliggghts.dir/cfd_datacoupling.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/cfd_datacoupling.cpp [ 7%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_datacoupling_file.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/cfd_datacoupling_file.cpp.o -MF CMakeFiles/libliggghts.dir/cfd_datacoupling_file.cpp.o.d -o CMakeFiles/libliggghts.dir/cfd_datacoupling_file.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/cfd_datacoupling_file.cpp [ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_regionmodel_none.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/cfd_regionmodel_none.cpp.o -MF CMakeFiles/libliggghts.dir/cfd_regionmodel_none.cpp.o.d -o CMakeFiles/libliggghts.dir/cfd_regionmodel_none.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/cfd_regionmodel_none.cpp [ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_datacoupling_mpi.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/cfd_datacoupling_mpi.cpp.o -MF CMakeFiles/libliggghts.dir/cfd_datacoupling_mpi.cpp.o.d -o CMakeFiles/libliggghts.dir/cfd_datacoupling_mpi.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/cfd_datacoupling_mpi.cpp [ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/citeme.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/citeme.cpp.o -MF CMakeFiles/libliggghts.dir/citeme.cpp.o.d -o CMakeFiles/libliggghts.dir/citeme.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/citeme.cpp [ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/change_box.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/change_box.cpp.o -MF CMakeFiles/libliggghts.dir/change_box.cpp.o.d -o CMakeFiles/libliggghts.dir/change_box.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/change_box.cpp [ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/comm.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/comm.cpp.o -MF CMakeFiles/libliggghts.dir/comm.cpp.o.d -o CMakeFiles/libliggghts.dir/comm.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/comm.cpp [ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/compute.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute.cpp.o -MF CMakeFiles/libliggghts.dir/compute.cpp.o.d -o CMakeFiles/libliggghts.dir/compute.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/bond_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:351:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 351 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:360:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 360 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:363:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 363 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/bond_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/bond_harmonic.cpp:200:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread(&k[1],sizeof(double),atom->nbondtypes,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/bond_harmonic.cpp:201:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 201 | fread(&r0[1],sizeof(double),atom->nbondtypes,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_atom_molecule.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_atom_molecule.cpp.o -MF CMakeFiles/libliggghts.dir/compute_atom_molecule.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_atom_molecule.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_atom_molecule.cpp [ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_bond_local.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_bond_local.cpp.o -MF CMakeFiles/libliggghts.dir/compute_bond_local.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_bond_local.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_bond_local.cpp [ 10%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_centro_atom.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_centro_atom.cpp.o -MF CMakeFiles/libliggghts.dir/compute_centro_atom.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_centro_atom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_centro_atom.cpp [ 10%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_cluster_atom.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_cluster_atom.cpp.o -MF CMakeFiles/libliggghts.dir/compute_cluster_atom.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_cluster_atom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_cluster_atom.cpp [ 10%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_cna_atom.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_cna_atom.cpp.o -MF CMakeFiles/libliggghts.dir/compute_cna_atom.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_cna_atom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_cna_atom.cpp [ 11%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_com.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_com.cpp.o -MF CMakeFiles/libliggghts.dir/compute_com.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_com.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_com.cpp [ 11%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_com_molecule.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND 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/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_contact_atom_gran.cpp.o -MF CMakeFiles/libliggghts.dir/compute_contact_atom_gran.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_contact_atom_gran.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_contact_atom_gran.cpp [ 12%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_displace_atom.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_displace_atom.cpp.o -MF CMakeFiles/libliggghts.dir/compute_displace_atom.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_displace_atom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_displace_atom.cpp [ 12%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_coord_atom.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_coord_atom.cpp.o -MF CMakeFiles/libliggghts.dir/compute_coord_atom.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_coord_atom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_coord_atom.cpp [ 12%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate_sphere.cpp.o [ 12%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate_asphere.cpp.o [ 13%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate_sphere_atom.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_erotate_asphere.cpp.o -MF CMakeFiles/libliggghts.dir/compute_erotate_asphere.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_erotate_asphere.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_erotate_asphere.cpp cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_erotate_sphere.cpp.o -MF CMakeFiles/libliggghts.dir/compute_erotate_sphere.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_erotate_sphere.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_erotate_sphere.cpp [ 13%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate_superquadric.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_erotate_sphere_atom.cpp.o -MF CMakeFiles/libliggghts.dir/compute_erotate_sphere_atom.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_erotate_sphere_atom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_erotate_sphere_atom.cpp [ 13%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate_multisphere.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK 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/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_group_group.cpp [ 14%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_erotate.cpp.o -MF CMakeFiles/libliggghts.dir/compute_erotate.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_erotate.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_erotate.cpp [ 15%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_gyration.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread 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-D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_gyration_molecule.cpp.o -MF CMakeFiles/libliggghts.dir/compute_gyration_molecule.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_gyration_molecule.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_gyration_molecule.cpp [ 15%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_inertia_molecule.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_inertia_molecule.cpp.o -MF CMakeFiles/libliggghts.dir/compute_inertia_molecule.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_inertia_molecule.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_inertia_molecule.cpp [ 16%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_ke.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_ke.cpp.o -MF CMakeFiles/libliggghts.dir/compute_ke.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_ke.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_ke.cpp [ 16%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_ke_atom.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_ke_atom.cpp.o -MF CMakeFiles/libliggghts.dir/compute_ke_atom.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_ke_atom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_ke_atom.cpp [ 16%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_ke_multisphere.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_ke_multisphere.cpp.o -MF CMakeFiles/libliggghts.dir/compute_ke_multisphere.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_ke_multisphere.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_ke_multisphere.cpp [ 17%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_msd.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_msd.cpp.o -MF CMakeFiles/libliggghts.dir/compute_msd.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_msd.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_msd.cpp [ 18%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_pair_gran_local.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB 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cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_msd_molecule.cpp.o -MF CMakeFiles/libliggghts.dir/compute_msd_molecule.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_msd_molecule.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_msd_molecule.cpp [ 18%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_nparticles_tracer_region.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_nparticles_tracer_region.cpp.o -MF CMakeFiles/libliggghts.dir/compute_nparticles_tracer_region.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_nparticles_tracer_region.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_nparticles_tracer_region.cpp [ 18%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_pe.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK 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-D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_pe_atom.cpp.o -MF CMakeFiles/libliggghts.dir/compute_pe_atom.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_pe_atom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_pe_atom.cpp [ 18%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_pressure.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_pressure.cpp.o -MF CMakeFiles/libliggghts.dir/compute_pressure.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_pressure.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_pressure.cpp [ 19%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_property_atom.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_property_atom.cpp.o -MF CMakeFiles/libliggghts.dir/compute_property_atom.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_property_atom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_property_atom.cpp [ 19%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_property_local.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_property_local.cpp.o -MF CMakeFiles/libliggghts.dir/compute_property_local.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_property_local.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_property_local.cpp [ 19%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_property_molecule.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_property_molecule.cpp.o -MF CMakeFiles/libliggghts.dir/compute_property_molecule.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_property_molecule.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_property_molecule.cpp [ 20%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_rdf.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK 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/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_reduce_region.cpp.o -MF CMakeFiles/libliggghts.dir/compute_reduce_region.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_reduce_region.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_reduce_region.cpp cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_reduce.cpp.o -MF CMakeFiles/libliggghts.dir/compute_reduce.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_reduce.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_reduce.cpp [ 21%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_rigid.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_rigid.cpp.o -MF CMakeFiles/libliggghts.dir/compute_rigid.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_rigid.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_rigid.cpp [ 21%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_stress_atom.cpp.o [ 21%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_slice.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_slice.cpp.o -MF CMakeFiles/libliggghts.dir/compute_slice.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_slice.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_slice.cpp [ 22%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_temp.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/compute_temp.cpp.o -MF CMakeFiles/libliggghts.dir/compute_temp.cpp.o.d -o CMakeFiles/libliggghts.dir/compute_temp.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/compute_temp.cpp [ 22%] Building CXX object src/CMakeFiles/libliggghts.dir/contact_models.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/contact_models.cpp.o -MF CMakeFiles/libliggghts.dir/contact_models.cpp.o.d -o CMakeFiles/libliggghts.dir/contact_models.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/contact_models.cpp [ 22%] Building CXX object src/CMakeFiles/libliggghts.dir/container_base.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/container_base.cpp.o -MF CMakeFiles/libliggghts.dir/container_base.cpp.o.d -o CMakeFiles/libliggghts.dir/container_base.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/container_base.cpp [ 22%] Building CXX object src/CMakeFiles/libliggghts.dir/create_atoms.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/create_atoms.cpp.o -MF CMakeFiles/libliggghts.dir/create_atoms.cpp.o.d -o CMakeFiles/libliggghts.dir/create_atoms.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/create_atoms.cpp [ 23%] Building CXX object src/CMakeFiles/libliggghts.dir/create_box.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/create_box.cpp.o -MF CMakeFiles/libliggghts.dir/create_box.cpp.o.d -o CMakeFiles/libliggghts.dir/create_box.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/create_box.cpp [ 23%] Building CXX object src/CMakeFiles/libliggghts.dir/custom_value_tracker.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/custom_value_tracker.cpp.o -MF CMakeFiles/libliggghts.dir/custom_value_tracker.cpp.o.d -o CMakeFiles/libliggghts.dir/custom_value_tracker.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/custom_value_tracker.cpp [ 23%] Building CXX object src/CMakeFiles/libliggghts.dir/delete_atoms.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/delete_atoms.cpp.o -MF CMakeFiles/libliggghts.dir/delete_atoms.cpp.o.d -o CMakeFiles/libliggghts.dir/delete_atoms.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/delete_atoms.cpp [ 24%] Building CXX object src/CMakeFiles/libliggghts.dir/delete_bonds.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/delete_bonds.cpp.o -MF CMakeFiles/libliggghts.dir/delete_bonds.cpp.o.d -o CMakeFiles/libliggghts.dir/delete_bonds.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/delete_bonds.cpp [ 24%] Building CXX object src/CMakeFiles/libliggghts.dir/dihedral_hybrid.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dihedral_hybrid.cpp.o -MF CMakeFiles/libliggghts.dir/dihedral_hybrid.cpp.o.d -o CMakeFiles/libliggghts.dir/dihedral_hybrid.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp [ 24%] Building CXX object src/CMakeFiles/libliggghts.dir/dihedral.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dihedral.cpp.o -MF CMakeFiles/libliggghts.dir/dihedral.cpp.o.d -o CMakeFiles/libliggghts.dir/dihedral.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dihedral.cpp [ 25%] Building CXX object src/CMakeFiles/libliggghts.dir/displace_atoms.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/displace_atoms.cpp.o -MF CMakeFiles/libliggghts.dir/displace_atoms.cpp.o.d -o CMakeFiles/libliggghts.dir/displace_atoms.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/displace_atoms.cpp [ 25%] Building CXX object src/CMakeFiles/libliggghts.dir/domain.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/domain.cpp.o -MF CMakeFiles/libliggghts.dir/domain.cpp.o.d -o CMakeFiles/libliggghts.dir/domain.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/domain.cpp [ 25%] Building CXX object src/CMakeFiles/libliggghts.dir/dump.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump.cpp.o -MF CMakeFiles/libliggghts.dir/dump.cpp.o.d -o CMakeFiles/libliggghts.dir/dump.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump.cpp [ 26%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_atom_vtk.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_atom_vtk.cpp.o -MF CMakeFiles/libliggghts.dir/dump_atom_vtk.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_atom_vtk.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_atom_vtk.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:352:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 352 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:361:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 361 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:364:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 364 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_custom.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_custom.cpp.o -MF CMakeFiles/libliggghts.dir/dump_custom.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_custom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_custom.cpp [ 26%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_custom_vtk.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_custom_vtk.cpp.o -MF CMakeFiles/libliggghts.dir/dump_custom_vtk.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_custom_vtk.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_custom_vtk.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_custom_vtm.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_custom_vtm.cpp.o -MF CMakeFiles/libliggghts.dir/dump_custom_vtm.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_custom_vtm.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_custom_vtm.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_euler_vtk.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o -MF CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_decomposition_vtk.cpp cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_euler_vtk.cpp.o -MF CMakeFiles/libliggghts.dir/dump_euler_vtk.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_euler_vtk.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_euler_vtk.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_image.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_image.cpp.o -MF CMakeFiles/libliggghts.dir/dump_image.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_image.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_image.cpp [ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_local.cpp.o -MF CMakeFiles/libliggghts.dir/dump_local.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_local.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_local.cpp [ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local_gran.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_local_gran.cpp.o -MF CMakeFiles/libliggghts.dir/dump_local_gran.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_local_gran.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_local_gran.cpp [ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local_gran_vtk.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_local_gran_vtk.cpp.o -MF CMakeFiles/libliggghts.dir/dump_local_gran_vtk.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_local_gran_vtk.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_local_gran_vtk.cpp [ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_mesh.cpp.o -MF CMakeFiles/libliggghts.dir/dump_mesh.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_mesh.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_mesh.cpp [ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_stl.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_mesh_stl.cpp.o -MF CMakeFiles/libliggghts.dir/dump_mesh_stl.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_mesh_stl.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_mesh_stl.cpp [ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_vtk.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_mesh_vtk.cpp.o -MF CMakeFiles/libliggghts.dir/dump_mesh_vtk.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_mesh_vtk.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_mesh_vtk.cpp [ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_vtm.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_mesh_vtm.cpp.o -MF CMakeFiles/libliggghts.dir/dump_mesh_vtm.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_mesh_vtm.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_mesh_vtm.cpp [ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_movie.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_movie.cpp.o -MF CMakeFiles/libliggghts.dir/dump_movie.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_movie.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_movie.cpp [ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_particle.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_particle.cpp.o -MF CMakeFiles/libliggghts.dir/dump_particle.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_particle.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_particle.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_vtk.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_vtk.cpp.o -MF CMakeFiles/libliggghts.dir/dump_vtk.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_vtk.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_vtk.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_xyz.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/dump_xyz.cpp.o -MF CMakeFiles/libliggghts.dir/dump_xyz.cpp.o.d -o CMakeFiles/libliggghts.dir/dump_xyz.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/dump_xyz.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/error.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/error.cpp.o -MF CMakeFiles/libliggghts.dir/error.cpp.o.d -o CMakeFiles/libliggghts.dir/error.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/error.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/finish.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/finish.cpp.o -MF CMakeFiles/libliggghts.dir/finish.cpp.o.d -o CMakeFiles/libliggghts.dir/finish.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/finish.cpp [ 32%] Building CXX object src/CMakeFiles/libliggghts.dir/fix.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix.cpp.o -MF CMakeFiles/libliggghts.dir/fix.cpp.o.d -o CMakeFiles/libliggghts.dir/fix.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix.cpp [ 32%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_adapt.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_adapt.cpp.o -MF CMakeFiles/libliggghts.dir/fix_adapt.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_adapt.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_adapt.cpp [ 32%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_addforce.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_addforce.cpp.o -MF CMakeFiles/libliggghts.dir/fix_addforce.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_addforce.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_addforce.cpp [ 32%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_correlate.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_ave_correlate.cpp.o -MF CMakeFiles/libliggghts.dir/fix_ave_correlate.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_ave_correlate.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp [ 33%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_atom.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_ave_atom.cpp.o -MF CMakeFiles/libliggghts.dir/fix_ave_atom.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_ave_atom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_ave_atom.cpp [ 33%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_euler.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_ave_euler.cpp.o -MF CMakeFiles/libliggghts.dir/fix_ave_euler.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_ave_euler.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_ave_euler.cpp [ 34%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_histo.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_ave_histo.cpp.o -MF CMakeFiles/libliggghts.dir/fix_ave_histo.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_ave_histo.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp [ 34%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_spatial.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_ave_spatial.cpp.o -MF CMakeFiles/libliggghts.dir/fix_ave_spatial.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_ave_spatial.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_ave_spatial.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp: In member function ‘virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp:520:16: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 520 | ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp: In member function ‘virtual void LAMMPS_NS::FixAveHisto::end_of_step()’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp:848:16: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 848 | ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_time.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ 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LAMMPS_NS::FixAveSpatial::end_of_step()’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_ave_spatial.cpp:917:16: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 917 | ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_aveforce.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_aveforce.cpp.o -MF CMakeFiles/libliggghts.dir/fix_aveforce.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_aveforce.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_aveforce.cpp [ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_base_liggghts.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_base_liggghts.cpp.o -MF CMakeFiles/libliggghts.dir/fix_base_liggghts.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_base_liggghts.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_base_liggghts.cpp [ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_box_relax.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_box_relax.cpp.o -MF CMakeFiles/libliggghts.dir/fix_box_relax.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_box_relax.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_box_relax.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_ave_time.cpp: In member function ‘void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_ave_time.cpp:670:16: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 670 | ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_buoyancy.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_buoyancy.cpp.o -MF CMakeFiles/libliggghts.dir/fix_buoyancy.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_buoyancy.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_buoyancy.cpp [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_cfd_coupling.cpp.o -MF CMakeFiles/libliggghts.dir/fix_cfd_coupling.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_cfd_coupling.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling.cpp [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection.cpp.o -MF CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection.cpp [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_impl.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_impl.cpp.o -MF CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_impl.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_impl.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_impl.cpp [ 37%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_species.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_species.cpp.o -MF CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_species.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_species.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp [ 37%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_force.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_force.cpp.o -MF CMakeFiles/libliggghts.dir/fix_cfd_coupling_force.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_force.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_force.cpp [ 37%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_force_implicit.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_force_implicit.cpp.o -MF CMakeFiles/libliggghts.dir/fix_cfd_coupling_force_implicit.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_force_implicit.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_force_implicit.cpp [ 38%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_check_timestep_gran.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_check_timestep_gran.cpp.o -MF CMakeFiles/libliggghts.dir/fix_check_timestep_gran.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_check_timestep_gran.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_check_timestep_gran.cpp [ 38%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_check_timestep_sph.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_check_timestep_sph.cpp.o -MF CMakeFiles/libliggghts.dir/fix_check_timestep_sph.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_check_timestep_sph.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_check_timestep_sph.cpp [ 38%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_history.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_contact_history.cpp.o -MF CMakeFiles/libliggghts.dir/fix_contact_history.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_contact_history.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_contact_history.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp: In constructor ‘LAMMPS_NS::FixCfdCouplingConvectionSpecies::FixCfdCouplingConvectionSpecies(LAMMPS_NS::LAMMPS*, int, char**)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:75:40: warning: ‘Source’ directive writing 6 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 75 | sprintf(sourceName_, "%sSource",speciesName_); | ^~~~~~ In file included from /usr/include/stdio.h:866, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/lammps.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pointers.h:64, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 7 and 134 bytes into a destination of size 128 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:76:40: warning: ‘Flux’ directive writing 4 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 76 | sprintf(convectiveFluxName_,"%sFlux",speciesName_); | ^~~~ In file included from /usr/include/stdio.h:866, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/lammps.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pointers.h:64, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:77:40: warning: ‘Capacity’ directive writing 8 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 77 | sprintf(capacityName_, "%sCapacity",speciesName_); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/lammps.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pointers.h:64, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 9 and 136 bytes into a destination of size 128 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:78:40: warning: ‘STE’ directive writing 3 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 78 | sprintf(steName_, "%sSTE",speciesName_); | ^~~ In file included from /usr/include/stdio.h:866, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/lammps.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pointers.h:64, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 131 bytes into a destination of size 128 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:79:40: warning: ‘TotalFlux’ directive writing 9 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 79 | sprintf(totalFluxName_, "%sTotalFlux",speciesName_); | ^~~~~~~~~ In file included from /usr/include/stdio.h:866, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/lammps.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pointers.h:64, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 10 and 137 bytes into a destination of size 128 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:80:44: warning: ‘Fluid’ directive writing 5 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 80 | sprintf(speciesFluidName_, "%sFluid",speciesName_); | ^~~~~ In file included from /usr/include/stdio.h:866, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/lammps.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pointers.h:64, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 6 and 133 bytes into a destination of size 128 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:81:44: warning: ‘TransCoeff’ directive writing 10 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 81 | sprintf(speciesTransCoeffName_, "%sTransCoeff",speciesName_); | ^~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/lammps.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pointers.h:64, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 11 and 138 bytes into a destination of size 128 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_history_mesh.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_contact_history_mesh.cpp.o -MF CMakeFiles/libliggghts.dir/fix_contact_history_mesh.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_contact_history_mesh.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_contact_history_mesh.cpp [ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_property_atom.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_contact_property_atom.cpp.o -MF CMakeFiles/libliggghts.dir/fix_contact_property_atom.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_contact_property_atom.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_contact_property_atom.cpp [ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o -MF CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_contact_property_atom_wall.cpp [ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_continuum_weighted.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_continuum_weighted.cpp.o -MF CMakeFiles/libliggghts.dir/fix_continuum_weighted.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_continuum_weighted.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_continuum_weighted.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_check_timestep_sph.cpp:63: warning: "BIG" redefined 63 | #define BIG 1000000. | In file included from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_neighbor_list_I.h:48, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_neighbor_list.h:183, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/surface_mesh.h:54, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/tri_mesh.h:47, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_mesh_surface.h:56, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_wall_gran.h:53, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_check_timestep_sph.cpp:52: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/domain_definitions.h:60: note: this is the location of the previous definition 60 | #define BIG 1.0e20 | [ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_deform.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_deform.cpp.o -MF CMakeFiles/libliggghts.dir/fix_deform.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_deform.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_deform.cpp [ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_deform_check.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_deform_check.cpp.o -MF CMakeFiles/libliggghts.dir/fix_deform_check.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_deform_check.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_deform_check.cpp [ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_diam_max.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_diam_max.cpp.o -MF CMakeFiles/libliggghts.dir/fix_diam_max.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_diam_max.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_diam_max.cpp [ 41%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_drag.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_drag.cpp.o -MF CMakeFiles/libliggghts.dir/fix_drag.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_drag.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_drag.cpp [ 41%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_dt_reset.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_dt_reset.cpp.o -MF CMakeFiles/libliggghts.dir/fix_dt_reset.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_dt_reset.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_dt_reset.cpp [ 41%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_efield.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_efield.cpp.o -MF CMakeFiles/libliggghts.dir/fix_efield.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_efield.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_efield.cpp [ 42%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_enforce2d.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_enforce2d.cpp.o -MF CMakeFiles/libliggghts.dir/fix_enforce2d.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_enforce2d.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_enforce2d.cpp [ 42%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_external.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_external.cpp.o -MF CMakeFiles/libliggghts.dir/fix_external.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_external.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_external.cpp [ 42%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_fiber_spring_simple.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_fiber_spring_simple.cpp.o -MF CMakeFiles/libliggghts.dir/fix_fiber_spring_simple.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_fiber_spring_simple.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_fiber_spring_simple.cpp [ 43%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_freeze.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_freeze.cpp.o -MF CMakeFiles/libliggghts.dir/fix_freeze.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_freeze.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_freeze.cpp [ 43%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_gravity.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_gravity.cpp.o -MF CMakeFiles/libliggghts.dir/fix_gravity.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_gravity.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_gravity.cpp [ 43%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_heat_gran.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_heat_gran.cpp.o -MF CMakeFiles/libliggghts.dir/fix_heat_gran.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_heat_gran.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_heat_gran.cpp [ 44%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_heat_gran_conduction.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_heat_gran_conduction.cpp.o -MF CMakeFiles/libliggghts.dir/fix_heat_gran_conduction.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_heat_gran_conduction.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_heat_gran_conduction.cpp [ 44%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_insert.cpp.o cd 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src/CMakeFiles/libliggghts.dir/fix_insert_pack.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_insert_pack.cpp.o -MF CMakeFiles/libliggghts.dir/fix_insert_pack.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_insert_pack.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_insert_pack.cpp [ 45%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_insert_rate_region.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_insert_rate_region.cpp.o -MF CMakeFiles/libliggghts.dir/fix_insert_rate_region.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_insert_rate_region.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_insert_rate_region.cpp [ 45%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_insert_stream.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_insert_stream.cpp.o -MF CMakeFiles/libliggghts.dir/fix_insert_stream.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_insert_stream.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_insert_stream.cpp [ 45%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_lb_coupling_onetoone.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_lb_coupling_onetoone.cpp.o -MF CMakeFiles/libliggghts.dir/fix_lb_coupling_onetoone.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_lb_coupling_onetoone.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_lb_coupling_onetoone.cpp [ 45%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_lineforce.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_lineforce.cpp.o -MF CMakeFiles/libliggghts.dir/fix_lineforce.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_lineforce.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_lineforce.cpp [ 46%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_massflow_mesh.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_massflow_mesh.cpp.o -MF CMakeFiles/libliggghts.dir/fix_massflow_mesh.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_massflow_mesh.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_massflow_mesh.cpp [ 46%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_massflow_mesh_sieve.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_massflow_mesh_sieve.cpp.o -MF CMakeFiles/libliggghts.dir/fix_massflow_mesh_sieve.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_massflow_mesh_sieve.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_massflow_mesh_sieve.cpp [ 46%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_mesh.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_mesh.cpp.o -MF CMakeFiles/libliggghts.dir/fix_mesh.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_mesh.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_mesh.cpp [ 47%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_mesh_surface.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_mesh_surface.cpp.o -MF CMakeFiles/libliggghts.dir/fix_mesh_surface.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_mesh_surface.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_mesh_surface.cpp [ 47%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_minimize.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_minimize.cpp.o -MF CMakeFiles/libliggghts.dir/fix_minimize.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_minimize.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_minimize.cpp [ 47%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_momentum.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_momentum.cpp.o -MF CMakeFiles/libliggghts.dir/fix_momentum.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_momentum.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_momentum.cpp [ 48%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_move.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_move.cpp.o -MF CMakeFiles/libliggghts.dir/fix_move.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_move.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_move.cpp [ 48%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_move_mesh.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_move_mesh.cpp.o -MF CMakeFiles/libliggghts.dir/fix_move_mesh.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_move_mesh.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_move_mesh.cpp [ 48%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_multicontact_halfspace.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_multicontact_halfspace.cpp.o -MF CMakeFiles/libliggghts.dir/fix_multicontact_halfspace.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_multicontact_halfspace.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_multicontact_halfspace.cpp [ 49%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_multisphere.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_multisphere.cpp.o -MF CMakeFiles/libliggghts.dir/fix_multisphere.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_multisphere.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_multisphere.cpp [ 49%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_multisphere_break.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_multisphere_break.cpp.o -MF CMakeFiles/libliggghts.dir/fix_multisphere_break.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_multisphere_break.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_multisphere_break.cpp [ 49%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_multisphere_comm.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_multisphere_comm.cpp.o -MF CMakeFiles/libliggghts.dir/fix_multisphere_comm.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_multisphere_comm.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_multisphere_comm.cpp [ 49%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_nve.cpp.o -MF CMakeFiles/libliggghts.dir/fix_nve.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_nve.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_nve.cpp [ 50%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_neighlist_mesh.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_neighlist_mesh.cpp.o -MF CMakeFiles/libliggghts.dir/fix_neighlist_mesh.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_neighlist_mesh.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_neighlist_mesh.cpp [ 50%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_asphere.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_nve_asphere.cpp.o -MF CMakeFiles/libliggghts.dir/fix_nve_asphere.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_nve_asphere.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_nve_asphere.cpp [ 50%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_asphere_base.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB 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/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_nve_asphere_noforce.cpp [ 51%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_limit.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_nve_limit.cpp.o -MF 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src/CMakeFiles/libliggghts.dir/fix_nve_line.cpp.o -MF CMakeFiles/libliggghts.dir/fix_nve_line.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_nve_line.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_nve_line.cpp [ 52%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_noforce.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK 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-Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_nve_sph.cpp.o -MF CMakeFiles/libliggghts.dir/fix_nve_sph.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_nve_sph.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_nve_sph.cpp [ 52%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_sph_stationary.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_nve_sph_stationary.cpp.o -MF CMakeFiles/libliggghts.dir/fix_nve_sph_stationary.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_nve_sph_stationary.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_nve_sph_stationary.cpp [ 53%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_sphere.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_nve_sphere.cpp.o -MF CMakeFiles/libliggghts.dir/fix_nve_sphere.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_nve_sphere.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_nve_sphere.cpp [ 53%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_superquadric.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_nve_superquadric.cpp.o -MF CMakeFiles/libliggghts.dir/fix_nve_superquadric.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_nve_superquadric.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_nve_superquadric.cpp [ 53%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_particledistribution_discrete.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_particledistribution_discrete.cpp.o -MF CMakeFiles/libliggghts.dir/fix_particledistribution_discrete.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_particledistribution_discrete.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_particledistribution_discrete.cpp [ 54%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_planeforce.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_planeforce.cpp.o -MF CMakeFiles/libliggghts.dir/fix_planeforce.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_planeforce.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_planeforce.cpp [ 54%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_print.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_print.cpp.o -MF CMakeFiles/libliggghts.dir/fix_print.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_print.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_print.cpp [ 54%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_property_atom.cpp.o cd 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src/CMakeFiles/libliggghts.dir/fix_property_atom_tracer.cpp.o -MF CMakeFiles/libliggghts.dir/fix_property_atom_tracer.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_property_atom_tracer.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_property_atom_tracer.cpp [ 55%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_property_atom_tracer_stream.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_property_atom_tracer_stream.cpp.o -MF CMakeFiles/libliggghts.dir/fix_property_atom_tracer_stream.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_property_atom_tracer_stream.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_property_atom_tracer_stream.cpp [ 55%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_property_global.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_property_global.cpp.o -MF CMakeFiles/libliggghts.dir/fix_property_global.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_property_global.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_property_global.cpp [ 56%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_read_restart.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_read_restart.cpp.o -MF CMakeFiles/libliggghts.dir/fix_read_restart.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_read_restart.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_read_restart.cpp [ 56%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_region_variable.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_region_variable.cpp.o -MF CMakeFiles/libliggghts.dir/fix_region_variable.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_region_variable.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_region_variable.cpp [ 56%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_respa.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_respa.cpp.o -MF CMakeFiles/libliggghts.dir/fix_respa.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_respa.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_respa.cpp [ 57%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_rigid.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_rigid.cpp.o -MF CMakeFiles/libliggghts.dir/fix_rigid.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_rigid.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_rigid.cpp [ 57%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_scalar_transport_equation.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_scalar_transport_equation.cpp.o -MF CMakeFiles/libliggghts.dir/fix_scalar_transport_equation.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_scalar_transport_equation.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_scalar_transport_equation.cpp [ 57%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_setforce.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_setforce.cpp.o -MF CMakeFiles/libliggghts.dir/fix_setforce.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_setforce.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_setforce.cpp [ 58%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_sph.cpp.o -MF CMakeFiles/libliggghts.dir/fix_sph.cpp.o.d -o 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src/CMakeFiles/libliggghts.dir/fix_sph_density_continuity.cpp.o -MF CMakeFiles/libliggghts.dir/fix_sph_density_continuity.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_sph_density_continuity.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_sph_density_continuity.cpp [ 58%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph_density_corr.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_sph_density_corr.cpp.o -MF CMakeFiles/libliggghts.dir/fix_sph_density_corr.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_sph_density_corr.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_sph_density_corr.cpp [ 59%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph_density_summation.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_sph_density_summation.cpp.o -MF CMakeFiles/libliggghts.dir/fix_sph_density_summation.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_sph_density_summation.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_sph_density_summation.cpp [ 59%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph_pressure.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_sph_pressure.cpp.o -MF CMakeFiles/libliggghts.dir/fix_sph_pressure.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_sph_pressure.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_sph_pressure.cpp [ 59%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_spring.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_spring.cpp.o -MF CMakeFiles/libliggghts.dir/fix_spring.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_spring.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_spring.cpp [ 59%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_spring_rg.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_spring_rg.cpp.o -MF CMakeFiles/libliggghts.dir/fix_spring_rg.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_spring_rg.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_spring_rg.cpp [ 60%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_spring_self.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK 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/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_store_force.cpp.o -MF CMakeFiles/libliggghts.dir/fix_store_force.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_store_force.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_store_force.cpp [ 61%] Building CXX 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/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_store_state.cpp [ 61%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_template_multiplespheres.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_template_multiplespheres.cpp.o -MF 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_template_sphere.cpp.o -MF CMakeFiles/libliggghts.dir/fix_template_sphere.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_template_sphere.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_template_sphere.cpp [ 62%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_template_superquadric.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_template_superquadric.cpp.o -MF CMakeFiles/libliggghts.dir/fix_template_superquadric.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_template_superquadric.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_template_superquadric.cpp [ 62%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_viscous.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_viscous.cpp.o -MF CMakeFiles/libliggghts.dir/fix_viscous.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_viscous.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_viscous.cpp [ 63%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_wall.cpp.o -MF CMakeFiles/libliggghts.dir/fix_wall.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_wall.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_wall.cpp [ 63%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall_gran.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_wall_gran.cpp.o -MF CMakeFiles/libliggghts.dir/fix_wall_gran.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_wall_gran.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_wall_gran.cpp [ 63%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall_region_sph.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND 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-DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_wall_region.cpp.o -MF CMakeFiles/libliggghts.dir/fix_wall_region.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_wall_region.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_wall_region.cpp [ 64%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall_sph.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/fix_wall_sph.cpp.o -MF CMakeFiles/libliggghts.dir/fix_wall_sph.cpp.o.d -o CMakeFiles/libliggghts.dir/fix_wall_sph.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/fix_wall_sph.cpp [ 64%] Building CXX object src/CMakeFiles/libliggghts.dir/force.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/force.cpp.o -MF CMakeFiles/libliggghts.dir/force.cpp.o.d -o CMakeFiles/libliggghts.dir/force.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/force.cpp [ 64%] Building CXX object src/CMakeFiles/libliggghts.dir/global_properties.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/global_properties.cpp.o -MF CMakeFiles/libliggghts.dir/global_properties.cpp.o.d -o CMakeFiles/libliggghts.dir/global_properties.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/global_properties.cpp [ 65%] Building CXX object src/CMakeFiles/libliggghts.dir/granular_pair_style.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/granular_pair_style.cpp.o -MF CMakeFiles/libliggghts.dir/granular_pair_style.cpp.o.d -o CMakeFiles/libliggghts.dir/granular_pair_style.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/granular_pair_style.cpp [ 65%] Building CXX object src/CMakeFiles/libliggghts.dir/granular_wall.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/granular_wall.cpp.o -MF CMakeFiles/libliggghts.dir/granular_wall.cpp.o.d -o CMakeFiles/libliggghts.dir/granular_wall.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/granular_wall.cpp [ 65%] Building CXX object src/CMakeFiles/libliggghts.dir/group.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/group.cpp.o -MF CMakeFiles/libliggghts.dir/group.cpp.o.d -o CMakeFiles/libliggghts.dir/group.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/group.cpp [ 66%] Building CXX object src/CMakeFiles/libliggghts.dir/image.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/image.cpp.o -MF CMakeFiles/libliggghts.dir/image.cpp.o.d -o CMakeFiles/libliggghts.dir/image.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/image.cpp [ 66%] Building CXX object src/CMakeFiles/libliggghts.dir/improper.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/improper.cpp.o -MF CMakeFiles/libliggghts.dir/improper.cpp.o.d -o CMakeFiles/libliggghts.dir/improper.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/improper.cpp [ 66%] Building CXX object src/CMakeFiles/libliggghts.dir/improper_hybrid.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/improper_hybrid.cpp.o -MF CMakeFiles/libliggghts.dir/improper_hybrid.cpp.o.d -o CMakeFiles/libliggghts.dir/improper_hybrid.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/improper_hybrid.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/group.cpp: In member function ‘void LAMMPS_NS::Group::read_restart(FILE*)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/group.cpp:569:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 569 | if (me == 0) fread(&ngroup,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/group.cpp:581:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 581 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/group.cpp:585:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 585 | if (me == 0) fread(names[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/libliggghts.dir/info.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/info.cpp.o -MF CMakeFiles/libliggghts.dir/info.cpp.o.d -o CMakeFiles/libliggghts.dir/info.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/info.cpp [ 67%] Building CXX object src/CMakeFiles/libliggghts.dir/input.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/input.cpp.o -MF CMakeFiles/libliggghts.dir/input.cpp.o.d -o CMakeFiles/libliggghts.dir/input.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/input.cpp [ 67%] Building CXX object src/CMakeFiles/libliggghts.dir/input_mesh_tet.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/input_mesh_tet.cpp.o -MF CMakeFiles/libliggghts.dir/input_mesh_tet.cpp.o.d -o CMakeFiles/libliggghts.dir/input_mesh_tet.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/input_mesh_tet.cpp [ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/input_mesh_tri.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/input_mesh_tri.cpp.o -MF CMakeFiles/libliggghts.dir/input_mesh_tri.cpp.o.d -o CMakeFiles/libliggghts.dir/input_mesh_tri.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/input_mesh_tri.cpp [ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/input_multisphere.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/input_multisphere.cpp.o -MF CMakeFiles/libliggghts.dir/input_multisphere.cpp.o.d -o CMakeFiles/libliggghts.dir/input_multisphere.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/input_multisphere.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/input.cpp: In member function ‘void LAMMPS_NS::Input::shell()’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/input.cpp:1124:10: warning: ignoring return value of ‘int chdir(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1124 | chdir(arg[1]); | ~~~~~^~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/input.cpp:1170:24: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1170 | if (me == 0) system(work); | ~~~~~~^~~~~~ [ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/integrate.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/integrate.cpp.o -MF CMakeFiles/libliggghts.dir/integrate.cpp.o.d -o CMakeFiles/libliggghts.dir/integrate.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/integrate.cpp [ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/irregular.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/irregular.cpp.o -MF CMakeFiles/libliggghts.dir/irregular.cpp.o.d -o CMakeFiles/libliggghts.dir/irregular.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/irregular.cpp [ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/kspace.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/kspace.cpp.o -MF CMakeFiles/libliggghts.dir/kspace.cpp.o.d -o CMakeFiles/libliggghts.dir/kspace.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/kspace.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/improper_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/improper_hybrid.cpp:340:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 340 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/improper_hybrid.cpp:349:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 349 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/improper_hybrid.cpp:352:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 352 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/lammps.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/lammps.cpp.o -MF CMakeFiles/libliggghts.dir/lammps.cpp.o.d -o CMakeFiles/libliggghts.dir/lammps.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/lammps.cpp [ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/lattice.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/lattice.cpp.o -MF CMakeFiles/libliggghts.dir/lattice.cpp.o.d -o CMakeFiles/libliggghts.dir/lattice.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/lattice.cpp [ 70%] Building CXX object src/CMakeFiles/libliggghts.dir/library.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/library.cpp.o -MF CMakeFiles/libliggghts.dir/library.cpp.o.d -o CMakeFiles/libliggghts.dir/library.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/library.cpp [ 70%] Building CXX object src/CMakeFiles/libliggghts.dir/library_cfd_coupling.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/library_cfd_coupling.cpp.o -MF CMakeFiles/libliggghts.dir/library_cfd_coupling.cpp.o.d -o CMakeFiles/libliggghts.dir/library_cfd_coupling.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/library_cfd_coupling.cpp [ 70%] Building CXX object src/CMakeFiles/libliggghts.dir/math_extra.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/math_extra.cpp.o -MF CMakeFiles/libliggghts.dir/math_extra.cpp.o.d -o CMakeFiles/libliggghts.dir/math_extra.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/math_extra.cpp [ 71%] Building CXX object src/CMakeFiles/libliggghts.dir/math_extra_liggghts_nonspherical.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/math_extra_liggghts_nonspherical.cpp.o -MF CMakeFiles/libliggghts.dir/math_extra_liggghts_nonspherical.cpp.o.d -o CMakeFiles/libliggghts.dir/math_extra_liggghts_nonspherical.cpp.o -c 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src/CMakeFiles/libliggghts.dir/math_extra_liggghts_superquadric.cpp.o -MF CMakeFiles/libliggghts.dir/math_extra_liggghts_superquadric.cpp.o.d -o CMakeFiles/libliggghts.dir/math_extra_liggghts_superquadric.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/math_extra_liggghts_superquadric.cpp [ 71%] Building CXX object src/CMakeFiles/libliggghts.dir/memory.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/memory.cpp.o -MF CMakeFiles/libliggghts.dir/memory.cpp.o.d -o CMakeFiles/libliggghts.dir/memory.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/memory.cpp [ 72%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_module.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/mesh_module.cpp.o -MF CMakeFiles/libliggghts.dir/mesh_module.cpp.o.d -o CMakeFiles/libliggghts.dir/mesh_module.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/mesh_module.cpp [ 72%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_module_liquidtransfer.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/mesh_module_liquidtransfer.cpp.o -MF CMakeFiles/libliggghts.dir/mesh_module_liquidtransfer.cpp.o.d -o CMakeFiles/libliggghts.dir/mesh_module_liquidtransfer.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/mesh_module_liquidtransfer.cpp [ 72%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_module_stress.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/mesh_module_stress.cpp.o -MF CMakeFiles/libliggghts.dir/mesh_module_stress.cpp.o.d -o CMakeFiles/libliggghts.dir/mesh_module_stress.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/mesh_module_stress.cpp [ 72%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_module_stress_servo.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/mesh_module_stress_servo.cpp.o -MF CMakeFiles/libliggghts.dir/mesh_module_stress_servo.cpp.o.d -o CMakeFiles/libliggghts.dir/mesh_module_stress_servo.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/mesh_module_stress_servo.cpp [ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o -MF CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o.d -o CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/mesh_mover_linear.cpp [ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_mover_rotation.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/mesh_mover_rotation.cpp.o -MF CMakeFiles/libliggghts.dir/mesh_mover_rotation.cpp.o.d -o CMakeFiles/libliggghts.dir/mesh_mover_rotation.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/mesh_mover_rotation.cpp [ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/min.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/min.cpp.o -MF CMakeFiles/libliggghts.dir/min.cpp.o.d -o CMakeFiles/libliggghts.dir/min.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/min.cpp [ 74%] Building CXX object src/CMakeFiles/libliggghts.dir/min_cg.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/min_cg.cpp.o -MF CMakeFiles/libliggghts.dir/min_cg.cpp.o.d -o CMakeFiles/libliggghts.dir/min_cg.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/min_cg.cpp [ 74%] Building CXX object src/CMakeFiles/libliggghts.dir/min_linesearch.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/min_linesearch.cpp.o -MF CMakeFiles/libliggghts.dir/min_linesearch.cpp.o.d -o CMakeFiles/libliggghts.dir/min_linesearch.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/min_linesearch.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/mesh_module_stress_servo.cpp:67: warning: "BIG" redefined 67 | #define BIG 1000000. | In file included from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_neighbor_list_I.h:48, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_neighbor_list.h:183, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/surface_mesh.h:54, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/tri_mesh.h:47, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/mesh_module.h:44, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/mesh_module_stress.h:54, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/mesh_module_stress_servo.h:59, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/mesh_module_stress_servo.cpp:50: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/domain_definitions.h:60: note: this is the location of the previous definition 60 | #define BIG 1.0e20 | [ 74%] Building CXX object src/CMakeFiles/libliggghts.dir/minimize.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/minimize.cpp.o -MF CMakeFiles/libliggghts.dir/minimize.cpp.o.d -o CMakeFiles/libliggghts.dir/minimize.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/minimize.cpp [ 75%] Building CXX object src/CMakeFiles/libliggghts.dir/modified_andrew.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/modified_andrew.cpp.o -MF CMakeFiles/libliggghts.dir/modified_andrew.cpp.o.d -o CMakeFiles/libliggghts.dir/modified_andrew.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modified_andrew.cpp [ 75%] Building CXX object src/CMakeFiles/libliggghts.dir/modify.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/modify.cpp.o -MF CMakeFiles/libliggghts.dir/modify.cpp.o.d -o CMakeFiles/libliggghts.dir/modify.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp [ 75%] Building CXX object src/CMakeFiles/libliggghts.dir/modify_liggghts.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/modify_liggghts.cpp.o -MF CMakeFiles/libliggghts.dir/modify_liggghts.cpp.o.d -o CMakeFiles/libliggghts.dir/modify_liggghts.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify_liggghts.cpp [ 76%] Building CXX object src/CMakeFiles/libliggghts.dir/multisphere.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/multisphere.cpp.o -MF CMakeFiles/libliggghts.dir/multisphere.cpp.o.d -o CMakeFiles/libliggghts.dir/multisphere.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/multisphere.cpp [ 76%] Building CXX object src/CMakeFiles/libliggghts.dir/multisphere_parallel.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/multisphere_parallel.cpp.o -MF CMakeFiles/libliggghts.dir/multisphere_parallel.cpp.o.d -o CMakeFiles/libliggghts.dir/multisphere_parallel.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/multisphere_parallel.cpp [ 76%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_bond.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neigh_bond.cpp.o -MF CMakeFiles/libliggghts.dir/neigh_bond.cpp.o.d -o CMakeFiles/libliggghts.dir/neigh_bond.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neigh_bond.cpp [ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_derive.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neigh_derive.cpp.o -MF CMakeFiles/libliggghts.dir/neigh_derive.cpp.o.d -o CMakeFiles/libliggghts.dir/neigh_derive.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neigh_derive.cpp [ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o -MF CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o.d -o CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neigh_dummy.cpp [ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_gran.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neigh_gran.cpp.o -MF CMakeFiles/libliggghts.dir/neigh_gran.cpp.o.d -o CMakeFiles/libliggghts.dir/neigh_gran.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neigh_gran.cpp [ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_full.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neigh_full.cpp.o -MF CMakeFiles/libliggghts.dir/neigh_full.cpp.o.d -o CMakeFiles/libliggghts.dir/neigh_full.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neigh_full.cpp [ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o -MF CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o.d -o CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neigh_half_bin.cpp [ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_multi.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neigh_half_multi.cpp.o -MF CMakeFiles/libliggghts.dir/neigh_half_multi.cpp.o.d -o CMakeFiles/libliggghts.dir/neigh_half_multi.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neigh_half_multi.cpp [ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_nsq.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neigh_half_nsq.cpp.o -MF CMakeFiles/libliggghts.dir/neigh_half_nsq.cpp.o.d -o CMakeFiles/libliggghts.dir/neigh_half_nsq.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neigh_half_nsq.cpp [ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_list.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neigh_list.cpp.o -MF CMakeFiles/libliggghts.dir/neigh_list.cpp.o.d -o CMakeFiles/libliggghts.dir/neigh_list.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neigh_list.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp: In member function ‘int LAMMPS_NS::Modify::read_restart(FILE*)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1197:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1197 | if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1213:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1213 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1216:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1216 | if (me == 0) fread(id_restart_global[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1219:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1219 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1222:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1222 | if (me == 0) fread(style_restart_global[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1225:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1225 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1228:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1228 | if (me == 0) fread(state_restart_global[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1236:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1236 | if (me == 0) fread(&nfix_restart_peratom,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1252:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1252 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1255:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1255 | if (me == 0) fread(id_restart_peratom[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1258:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1258 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1261:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1261 | if (me == 0) fread(style_restart_peratom[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/modify.cpp:1264:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1264 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_request.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neigh_request.cpp.o -MF CMakeFiles/libliggghts.dir/neigh_request.cpp.o.d -o CMakeFiles/libliggghts.dir/neigh_request.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neigh_request.cpp [ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_respa.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neigh_respa.cpp.o -MF CMakeFiles/libliggghts.dir/neigh_respa.cpp.o.d -o CMakeFiles/libliggghts.dir/neigh_respa.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neigh_respa.cpp [ 80%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_stencil.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neigh_stencil.cpp.o -MF CMakeFiles/libliggghts.dir/neigh_stencil.cpp.o.d -o CMakeFiles/libliggghts.dir/neigh_stencil.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neigh_stencil.cpp [ 80%] Building CXX object src/CMakeFiles/libliggghts.dir/neighbor.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/neighbor.cpp.o -MF CMakeFiles/libliggghts.dir/neighbor.cpp.o.d -o CMakeFiles/libliggghts.dir/neighbor.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/neighbor.cpp [ 80%] Building CXX object src/CMakeFiles/libliggghts.dir/output.cpp.o In file included from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_gran_base.h:63, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/granular_styles.h:81, from /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/lammps.cpp:87: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/os_specific.h: In function ‘T* aligned_malloc(size_t) [with T = LIGGGHTS::ContactModels::SurfacesIntersectData]’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/os_specific.h:80:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 80 | posix_memalign(&ptr, alignment, sizeof(T)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/os_specific.h: In function ‘T* aligned_malloc(size_t) [with T = LIGGGHTS::ContactModels::ForceData]’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/os_specific.h:80:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/output.cpp.o -MF CMakeFiles/libliggghts.dir/output.cpp.o.d -o CMakeFiles/libliggghts.dir/output.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/output.cpp [ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/pair.cpp.o -MF CMakeFiles/libliggghts.dir/pair.cpp.o.d -o CMakeFiles/libliggghts.dir/pair.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair.cpp [ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_gran.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/pair_gran.cpp.o -MF CMakeFiles/libliggghts.dir/pair_gran.cpp.o.d -o CMakeFiles/libliggghts.dir/pair_gran.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_gran.cpp [ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_gran_proxy.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/pair_gran_proxy.cpp.o -MF CMakeFiles/libliggghts.dir/pair_gran_proxy.cpp.o.d -o CMakeFiles/libliggghts.dir/pair_gran_proxy.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp [ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o -MF CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o.d -o CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_hybrid.cpp [ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_hybrid_overlay.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/pair_hybrid_overlay.cpp.o -MF CMakeFiles/libliggghts.dir/pair_hybrid_overlay.cpp.o.d -o CMakeFiles/libliggghts.dir/pair_hybrid_overlay.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_hybrid_overlay.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*, int, int)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:660:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 660 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:674:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 674 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:677:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 677 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_gran.cpp: In member function ‘virtual void LAMMPS_NS::PairGran::read_restart(FILE*, int, int)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_gran.cpp:763:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 763 | if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_line_lj.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/pair_line_lj.cpp.o -MF CMakeFiles/libliggghts.dir/pair_line_lj.cpp.o.d -o CMakeFiles/libliggghts.dir/pair_line_lj.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_line_lj.cpp [ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_soft.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/pair_soft.cpp.o -MF CMakeFiles/libliggghts.dir/pair_soft.cpp.o.d -o CMakeFiles/libliggghts.dir/pair_soft.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_soft.cpp [ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_sph.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/pair_sph.cpp.o -MF CMakeFiles/libliggghts.dir/pair_sph.cpp.o.d -o CMakeFiles/libliggghts.dir/pair_sph.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_sph.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp: In member function ‘virtual void LAMMPS_NS::PairGranProxy::read_restart_settings(FILE*, int, int)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp:99:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 99 | fread(&selected, sizeof(int64_t), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_sph_artvisc_tenscorr.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/pair_sph_artvisc_tenscorr.cpp.o -MF CMakeFiles/libliggghts.dir/pair_sph_artvisc_tenscorr.cpp.o.d -o CMakeFiles/libliggghts.dir/pair_sph_artvisc_tenscorr.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairSoft::read_restart(FILE*, int, int)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_soft.cpp:282:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 282 | if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_soft.cpp:286:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 286 | fread(&prefactor[i][j],sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_soft.cpp:287:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 287 | fread(&cut[i][j],sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairSoft::read_restart_settings(FILE*, int, int)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_soft.cpp:312:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 312 | fread(&cut_global,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_soft.cpp:313:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 313 | fread(&mix_flag,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsert.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/particleToInsert.cpp.o -MF CMakeFiles/libliggghts.dir/particleToInsert.cpp.o.d -o CMakeFiles/libliggghts.dir/particleToInsert.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/particleToInsert.cpp [ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o -MF CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o.d -o CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/particleToInsertSuperquadric.cpp [ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o -MF CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o.d -o CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/particleToInsert_multisphere.cpp [ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/procmap.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/procmap.cpp.o -MF CMakeFiles/libliggghts.dir/procmap.cpp.o.d -o CMakeFiles/libliggghts.dir/procmap.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/procmap.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp: In member function ‘virtual void LAMMPS_NS::PairSphArtviscTenscorr::read_restart(FILE*, int, int)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp:300:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 300 | if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp: In member function ‘virtual void LAMMPS_NS::PairSphArtviscTenscorr::read_restart_settings(FILE*, int, int)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 322 | fread(&artVisc_flag,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp:323:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 323 | fread(&tensCorr_flag,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/libliggghts.dir/properties.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/properties.cpp.o -MF CMakeFiles/libliggghts.dir/properties.cpp.o.d -o CMakeFiles/libliggghts.dir/properties.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/properties.cpp [ 85%] Building CXX object src/CMakeFiles/libliggghts.dir/random.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/random.cpp.o -MF CMakeFiles/libliggghts.dir/random.cpp.o.d -o CMakeFiles/libliggghts.dir/random.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/random.cpp [ 85%] Building CXX object src/CMakeFiles/libliggghts.dir/property_registry.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/property_registry.cpp.o -MF CMakeFiles/libliggghts.dir/property_registry.cpp.o.d -o CMakeFiles/libliggghts.dir/property_registry.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/property_registry.cpp [ 85%] Building CXX object src/CMakeFiles/libliggghts.dir/random_park.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/random_park.cpp.o -MF CMakeFiles/libliggghts.dir/random_park.cpp.o.d -o CMakeFiles/libliggghts.dir/random_park.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/random_park.cpp [ 86%] Building CXX object src/CMakeFiles/libliggghts.dir/random_mars.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/random_mars.cpp.o -MF CMakeFiles/libliggghts.dir/random_mars.cpp.o.d -o CMakeFiles/libliggghts.dir/random_mars.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/random_mars.cpp [ 86%] Building CXX object src/CMakeFiles/libliggghts.dir/read_data.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/read_data.cpp.o -MF CMakeFiles/libliggghts.dir/read_data.cpp.o.d -o CMakeFiles/libliggghts.dir/read_data.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_data.cpp [ 86%] Building CXX object src/CMakeFiles/libliggghts.dir/read_dump.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/read_dump.cpp.o -MF CMakeFiles/libliggghts.dir/read_dump.cpp.o.d -o CMakeFiles/libliggghts.dir/read_dump.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_dump.cpp [ 87%] Building CXX object src/CMakeFiles/libliggghts.dir/read_restart.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/read_restart.cpp.o -MF CMakeFiles/libliggghts.dir/read_restart.cpp.o.d -o CMakeFiles/libliggghts.dir/read_restart.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp [ 87%] Building CXX object src/CMakeFiles/libliggghts.dir/reader.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/reader.cpp.o -MF CMakeFiles/libliggghts.dir/reader.cpp.o.d -o CMakeFiles/libliggghts.dir/reader.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/reader.cpp [ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/reader_xyz.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/reader_xyz.cpp.o -MF CMakeFiles/libliggghts.dir/reader_xyz.cpp.o.d -o CMakeFiles/libliggghts.dir/reader_xyz.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/reader_xyz.cpp [ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/reader_native.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/reader_native.cpp.o -MF CMakeFiles/libliggghts.dir/reader_native.cpp.o.d -o CMakeFiles/libliggghts.dir/reader_native.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/reader_native.cpp [ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/region.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/region.cpp.o -MF CMakeFiles/libliggghts.dir/region.cpp.o.d -o CMakeFiles/libliggghts.dir/region.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region.cpp [ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/region_block.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/region_block.cpp.o -MF CMakeFiles/libliggghts.dir/region_block.cpp.o.d -o CMakeFiles/libliggghts.dir/region_block.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_block.cpp [ 89%] Building CXX object src/CMakeFiles/libliggghts.dir/region_cone.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/region_cone.cpp.o -MF CMakeFiles/libliggghts.dir/region_cone.cpp.o.d -o CMakeFiles/libliggghts.dir/region_cone.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_cone.cpp [ 89%] Building CXX object src/CMakeFiles/libliggghts.dir/region_cylinder.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/region_cylinder.cpp.o -MF CMakeFiles/libliggghts.dir/region_cylinder.cpp.o.d -o CMakeFiles/libliggghts.dir/region_cylinder.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_cylinder.cpp [ 89%] Building CXX object src/CMakeFiles/libliggghts.dir/region_intersect.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/region_intersect.cpp.o -MF CMakeFiles/libliggghts.dir/region_intersect.cpp.o.d -o CMakeFiles/libliggghts.dir/region_intersect.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_intersect.cpp [ 90%] Building CXX object src/CMakeFiles/libliggghts.dir/region_mesh_tet.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/region_mesh_tet.cpp.o -MF CMakeFiles/libliggghts.dir/region_mesh_tet.cpp.o.d -o CMakeFiles/libliggghts.dir/region_mesh_tet.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_mesh_tet.cpp /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::nread_int(int*, int, FILE*)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp:863:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 863 | fread(buf,sizeof(int),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::nread_double(double*, int, FILE*)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp:874:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 874 | fread(buf,sizeof(double),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::nread_char(char*, int, FILE*)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp:885:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 885 | fread(buf,sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘int LAMMPS_NS::ReadRestart::read_int()’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp:896:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 896 | fread(&value,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘double LAMMPS_NS::ReadRestart::read_double()’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp:911:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 911 | fread(&value,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘char* LAMMPS_NS::ReadRestart::read_char()’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp:927:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 927 | fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp:933:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 933 | fread(value,sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘LAMMPS_NS::bigint LAMMPS_NS::ReadRestart::read_bigint()’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/read_restart.cpp:948:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 948 | fread(&value,sizeof(bigint),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 90%] Building CXX object src/CMakeFiles/libliggghts.dir/region_neighbor_list.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/region_neighbor_list.cpp.o -MF CMakeFiles/libliggghts.dir/region_neighbor_list.cpp.o.d -o CMakeFiles/libliggghts.dir/region_neighbor_list.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_neighbor_list.cpp [ 90%] Building CXX object src/CMakeFiles/libliggghts.dir/region_prism.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/region_prism.cpp.o -MF CMakeFiles/libliggghts.dir/region_prism.cpp.o.d -o CMakeFiles/libliggghts.dir/region_prism.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_prism.cpp [ 90%] Building CXX object src/CMakeFiles/libliggghts.dir/region_plane.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/region_plane.cpp.o -MF CMakeFiles/libliggghts.dir/region_plane.cpp.o.d -o CMakeFiles/libliggghts.dir/region_plane.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_plane.cpp [ 91%] Building CXX object src/CMakeFiles/libliggghts.dir/region_sphere.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/region_sphere.cpp.o -MF CMakeFiles/libliggghts.dir/region_sphere.cpp.o.d -o CMakeFiles/libliggghts.dir/region_sphere.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_sphere.cpp [ 91%] Building CXX object src/CMakeFiles/libliggghts.dir/region_union.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/region_union.cpp.o -MF CMakeFiles/libliggghts.dir/region_union.cpp.o.d -o CMakeFiles/libliggghts.dir/region_union.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_union.cpp [ 91%] Building CXX object src/CMakeFiles/libliggghts.dir/region_wedge.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/region_wedge.cpp.o -MF CMakeFiles/libliggghts.dir/region_wedge.cpp.o.d -o CMakeFiles/libliggghts.dir/region_wedge.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/region_wedge.cpp [ 92%] Building CXX object src/CMakeFiles/libliggghts.dir/replicate.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/replicate.cpp.o -MF CMakeFiles/libliggghts.dir/replicate.cpp.o.d -o CMakeFiles/libliggghts.dir/replicate.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/replicate.cpp [ 92%] Building CXX object src/CMakeFiles/libliggghts.dir/respa.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/respa.cpp.o -MF CMakeFiles/libliggghts.dir/respa.cpp.o.d -o CMakeFiles/libliggghts.dir/respa.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/respa.cpp [ 92%] Building CXX object src/CMakeFiles/libliggghts.dir/rotate.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/rotate.cpp.o -MF CMakeFiles/libliggghts.dir/rotate.cpp.o.d -o CMakeFiles/libliggghts.dir/rotate.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/rotate.cpp [ 93%] Building CXX object src/CMakeFiles/libliggghts.dir/run.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/run.cpp.o -MF CMakeFiles/libliggghts.dir/run.cpp.o.d -o CMakeFiles/libliggghts.dir/run.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/run.cpp [ 93%] Building CXX object src/CMakeFiles/libliggghts.dir/run_time.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/run_time.cpp.o -MF CMakeFiles/libliggghts.dir/run_time.cpp.o.d -o CMakeFiles/libliggghts.dir/run_time.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/run_time.cpp [ 93%] Building CXX object src/CMakeFiles/libliggghts.dir/set.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/set.cpp.o -MF CMakeFiles/libliggghts.dir/set.cpp.o.d -o CMakeFiles/libliggghts.dir/set.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/set.cpp [ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/signal_handling.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/signal_handling.cpp.o -MF CMakeFiles/libliggghts.dir/signal_handling.cpp.o.d -o CMakeFiles/libliggghts.dir/signal_handling.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/signal_handling.cpp [ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/sort_buffer.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/sort_buffer.cpp.o -MF CMakeFiles/libliggghts.dir/sort_buffer.cpp.o.d -o CMakeFiles/libliggghts.dir/sort_buffer.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/sort_buffer.cpp [ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/special.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/special.cpp.o -MF CMakeFiles/libliggghts.dir/special.cpp.o.d -o CMakeFiles/libliggghts.dir/special.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/special.cpp [ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/superquadric.cpp.o [ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/tet_mesh.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/superquadric.cpp.o -MF CMakeFiles/libliggghts.dir/superquadric.cpp.o.d -o CMakeFiles/libliggghts.dir/superquadric.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/superquadric.cpp cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/tet_mesh.cpp.o -MF CMakeFiles/libliggghts.dir/tet_mesh.cpp.o.d -o CMakeFiles/libliggghts.dir/tet_mesh.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/tet_mesh.cpp [ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/thermo.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/thermo.cpp.o -MF CMakeFiles/libliggghts.dir/thermo.cpp.o.d -o CMakeFiles/libliggghts.dir/thermo.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/thermo.cpp [ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/timer.cpp.o /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/signal_handling.cpp: In function ‘void LAMMPS_NS::SignalHandler::int_handler(int)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/signal_handling.cpp:65:18: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 65 | write(STDOUT_FILENO, warning.c_str(), len); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/signal_handling.cpp:72:14: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 72 | write(STDERR_FILENO, error.c_str(), len); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/signal_handling.cpp:89:14: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 89 | write(STDOUT_FILENO, warning.c_str(), len); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/signal_handling.cpp: In function ‘void LAMMPS_NS::SignalHandler::usr1_handler(int)’: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/signal_handling.cpp:108:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 108 | write(STDOUT_FILENO, warning.c_str(), len); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/timer.cpp.o -MF CMakeFiles/libliggghts.dir/timer.cpp.o.d -o CMakeFiles/libliggghts.dir/timer.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/timer.cpp [ 96%] Building CXX object src/CMakeFiles/libliggghts.dir/tri_mesh.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/tri_mesh.cpp.o -MF CMakeFiles/libliggghts.dir/tri_mesh.cpp.o.d -o CMakeFiles/libliggghts.dir/tri_mesh.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/tri_mesh.cpp [ 96%] Building CXX object src/CMakeFiles/libliggghts.dir/tri_mesh_planar.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/tri_mesh_planar.cpp.o -MF CMakeFiles/libliggghts.dir/tri_mesh_planar.cpp.o.d -o CMakeFiles/libliggghts.dir/tri_mesh_planar.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/tri_mesh_planar.cpp [ 96%] Building CXX object src/CMakeFiles/libliggghts.dir/universe.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/universe.cpp.o -MF CMakeFiles/libliggghts.dir/universe.cpp.o.d -o CMakeFiles/libliggghts.dir/universe.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/universe.cpp [ 97%] Building CXX object src/CMakeFiles/libliggghts.dir/update.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/update.cpp.o -MF CMakeFiles/libliggghts.dir/update.cpp.o.d -o CMakeFiles/libliggghts.dir/update.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/update.cpp [ 97%] Building CXX object src/CMakeFiles/libliggghts.dir/variable.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/variable.cpp.o -MF CMakeFiles/libliggghts.dir/variable.cpp.o.d -o CMakeFiles/libliggghts.dir/variable.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/variable.cpp [ 97%] Building CXX object src/CMakeFiles/libliggghts.dir/velocity.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/velocity.cpp.o -MF CMakeFiles/libliggghts.dir/velocity.cpp.o.d -o CMakeFiles/libliggghts.dir/velocity.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/velocity.cpp [ 98%] Building CXX object src/CMakeFiles/libliggghts.dir/verlet.cpp.o [ 98%] Building CXX object src/CMakeFiles/libliggghts.dir/write_data.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT src/CMakeFiles/libliggghts.dir/write_data.cpp.o -MF CMakeFiles/libliggghts.dir/write_data.cpp.o.d -o CMakeFiles/libliggghts.dir/write_data.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/write_data.cpp cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -Dlibliggghts_EXPORTS -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -MD -MT 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CMakeFiles/libliggghts.dir/random.cpp.o CMakeFiles/libliggghts.dir/random_mars.cpp.o CMakeFiles/libliggghts.dir/random_park.cpp.o CMakeFiles/libliggghts.dir/read_data.cpp.o CMakeFiles/libliggghts.dir/read_dump.cpp.o CMakeFiles/libliggghts.dir/read_restart.cpp.o CMakeFiles/libliggghts.dir/reader.cpp.o CMakeFiles/libliggghts.dir/reader_native.cpp.o CMakeFiles/libliggghts.dir/reader_xyz.cpp.o CMakeFiles/libliggghts.dir/region.cpp.o CMakeFiles/libliggghts.dir/region_block.cpp.o CMakeFiles/libliggghts.dir/region_cone.cpp.o CMakeFiles/libliggghts.dir/region_cylinder.cpp.o CMakeFiles/libliggghts.dir/region_intersect.cpp.o CMakeFiles/libliggghts.dir/region_mesh_tet.cpp.o CMakeFiles/libliggghts.dir/region_neighbor_list.cpp.o CMakeFiles/libliggghts.dir/region_plane.cpp.o CMakeFiles/libliggghts.dir/region_prism.cpp.o CMakeFiles/libliggghts.dir/region_sphere.cpp.o CMakeFiles/libliggghts.dir/region_union.cpp.o CMakeFiles/libliggghts.dir/region_wedge.cpp.o CMakeFiles/libliggghts.dir/replicate.cpp.o CMakeFiles/libliggghts.dir/respa.cpp.o CMakeFiles/libliggghts.dir/rotate.cpp.o CMakeFiles/libliggghts.dir/run.cpp.o CMakeFiles/libliggghts.dir/run_time.cpp.o CMakeFiles/libliggghts.dir/set.cpp.o CMakeFiles/libliggghts.dir/signal_handling.cpp.o CMakeFiles/libliggghts.dir/sort_buffer.cpp.o CMakeFiles/libliggghts.dir/special.cpp.o CMakeFiles/libliggghts.dir/superquadric.cpp.o CMakeFiles/libliggghts.dir/tet_mesh.cpp.o CMakeFiles/libliggghts.dir/thermo.cpp.o CMakeFiles/libliggghts.dir/timer.cpp.o CMakeFiles/libliggghts.dir/tri_mesh.cpp.o CMakeFiles/libliggghts.dir/tri_mesh_planar.cpp.o CMakeFiles/libliggghts.dir/universe.cpp.o CMakeFiles/libliggghts.dir/update.cpp.o CMakeFiles/libliggghts.dir/variable.cpp.o CMakeFiles/libliggghts.dir/velocity.cpp.o CMakeFiles/libliggghts.dir/verlet.cpp.o CMakeFiles/libliggghts.dir/write_data.cpp.o CMakeFiles/libliggghts.dir/write_dump.cpp.o CMakeFiles/libliggghts.dir/write_restart.cpp.o -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib: /usr/lib/x86_64-linux-gnu/libboost_mpi.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 -ljpeg /usr/lib/x86_64-linux-gnu/libvtkIOParallelXML-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkParallelMPI-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.0.so.9.0.3 -lmpi -lmpi_cxx -lmpi /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so -lmpi_cxx /usr/lib/x86_64-linux-gnu/libvtkIOXML-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkIOXMLParser-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkParallelCore-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.0.so.9.0.3 -lpthread /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libvtksys-9.0.so.9.0.3 -ldl cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/cmake -E cmake_symlink_library libliggghts.so.3.8.0 libliggghts.so.3 libliggghts.so make[3]: Leaving directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' [ 99%] Built target libliggghts make -f src/CMakeFiles/liggghts.dir/build.make src/CMakeFiles/liggghts.dir/depend make[3]: Entering directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/liggghts-EmCuXO/liggghts-3.8.0+repack1 /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src/CMakeFiles/liggghts.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/liggghts.dir/build.make src/CMakeFiles/liggghts.dir/build make[3]: Entering directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' [ 99%] Building CXX object src/CMakeFiles/liggghts.dir/main.cpp.o cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_MPICC_H -I/usr/include/eigen3 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -I/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/vtk-9.0 -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -pthread -MD -MT src/CMakeFiles/liggghts.dir/main.cpp.o -MF CMakeFiles/liggghts.dir/main.cpp.o.d -o CMakeFiles/liggghts.dir/main.cpp.o -c /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/src/main.cpp [100%] Linking CXX executable liggghts cd /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/liggghts.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/liggghts-EmCuXO/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/liggghts.dir/main.cpp.o -o liggghts -Wl,-rpath,/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/src:/usr/lib/x86_64-linux-gnu/openmpi/lib: libliggghts.so.3.8.0 /usr/lib/x86_64-linux-gnu/libboost_mpi.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 -ljpeg /usr/lib/x86_64-linux-gnu/libvtkIOParallelXML-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkIOXML-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkIOXMLParser-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkParallelMPI-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkParallelCore-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.0.so.9.0.3 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.0.so.9.0.3 -lpthread /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libvtksys-9.0.so.9.0.3 -ldl -lmpi -lmpi_cxx -lmpi -lmpi_cxx make[3]: Leaving directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' [100%] Built target liggghts make[2]: Leaving directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' /usr/bin/cmake -E cmake_progress_start /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build/CMakeFiles 0 make[1]: Leaving directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' dh: command-omitted: The call to "debian/rules override_dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_prep -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_auto_install -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build cd debian/build && make -j10 install DESTDIR=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' /usr/bin/cmake -S/build/liggghts-EmCuXO/liggghts-3.8.0+repack1 -B/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/lib/x86_64-linux-gnu/libliggghts.so.3.8.0 -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/lib/x86_64-linux-gnu/libliggghts.so.3 -- Set runtime path of "/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/lib/x86_64-linux-gnu/libliggghts.so.3.8.0" to "" -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/lib/x86_64-linux-gnu/libliggghts.so -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/bin/liggghts -- Set runtime path of "/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/bin/liggghts" to "" -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/abstract_mesh.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/accelerator_cuda.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/accelerator_omp.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/angle.h -- Installing: 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Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/multi_node_mesh_parallel_buffer_I.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/multi_vector_container.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/multisphere.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/multisphere_I.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/multisphere_parallel.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/multisphere_parallel_I.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/my_page.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/my_pool_chunk.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_bond.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_derive.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_dummy.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_full.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_gran.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_half_bin.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_half_multi.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_half_nsq.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_list.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_mlg_dummy.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_modify.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_multi_level_grid.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_request.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neigh_respa.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/neighbor.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/normal_model_base.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/normal_model_edinburgh.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/normal_model_edinburgh_stiffness.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/normal_model_hertz.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/normal_model_hertz_stiffness.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/normal_model_hooke.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/normal_model_hooke_hysteresis.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/normal_model_hooke_stiffness.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/normal_model_luding.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/normal_model_thornton_ning.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/os_specific.h -- Installing: 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/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/signal_handling.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/sort_buffer.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/special.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/sph_kernel_cubicspline.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/sph_kernel_cubicspline2D.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/sph_kernel_spiky.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/sph_kernel_spiky2D.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/sph_kernel_wendland.h -- Installing: 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/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tet_mesh.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tet_mesh_I.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/thermo.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/timer.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tracking_mesh.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tracking_mesh_I.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_line.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_mesh.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_mesh_I.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_mesh_I_superquadric.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_mesh_deform.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_mesh_planar.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_mesh_planar_I.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/universe.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/update.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/utils.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/variable.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/vector_container.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/vector_liggghts.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/velocity.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/verlet.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/version.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/volume_mesh.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/volume_mesh_I.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/write_data.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/write_dump.h -- Installing: /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/write_restart.h make[1]: Leaving directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/build' dh_install -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_installdocs -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_installchangelogs -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build debian/rules override_dh_installexamples make[1]: Entering directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1' dh_installexamples find /build/liggghts-EmCuXO/liggghts-3.8.0+repack1/debian/ -name ".gitignore" | xargs rm -f make[1]: Leaving directory '/build/liggghts-EmCuXO/liggghts-3.8.0+repack1' dh_installman -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_installsystemduser -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_lintian -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_perl -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_link -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_strip_nondeterminism -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_compress -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_fixperms -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_missing -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_installdeb -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_gencontrol -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dpkg-gencontrol: warning: Depends field of package liggghts-doc: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dh_builddeb -i -O--buildsystem=cmake -O--builddirectory=/build/liggghts-EmCuXO/liggghts-3.8.0\+repack1/debian/build dpkg-deb: building package 'liggghts-doc' in '../liggghts-doc_3.8.0+repack1-9_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../liggghts_3.8.0+repack1-9_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/liggghts-EmCuXO /tmp/liggghts-3.8.0+repack1-9p03gcg9o I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_root I: removing tempdir /tmp/mmdebstrap.rXsugaidoQ... I: success in 1517.6250 seconds md5: liggghts-doc_3.8.0+repack1-9_all.deb: OK sha1: liggghts-doc_3.8.0+repack1-9_all.deb: OK sha256: liggghts-doc_3.8.0+repack1-9_all.deb: OK Checksums: OK