Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/l/liggghts/liggghts_3.8.0+repack1-7_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/liggghts-3.8.0+repack1-7ao1lrkgn/liggghts_3.8.0+repack1-7_amd64.buildinfo Get source package info: liggghts=3.8.0+repack1-7 Source URL: http://snapshot.notset.fr/mr/package/liggghts/3.8.0+repack1-7/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.69-11.1 automake=1:1.16.2-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-6 binutils=2.34-8 binutils-common=2.34-8 binutils-x86-64-linux-gnu=2.34-8 bsdextrautils=2.35.2-6 bsdutils=1:2.35.2-4 build-essential=12.8 bzip2=1.0.8-3 cmake=3.16.3-3 cmake-data=3.16.3-3 coreutils=8.32-2 cpp=4:9.2.1-3.1 cpp-9=9.3.0-14 dash=0.5.10.2-7 debconf=1.5.74 debhelper=13.1 debianutils=4.11 default-libmysqlclient-dev=1.0.5 dh-autoreconf=19 dh-strip-nondeterminism=1.8.1-1 diffutils=1:3.7-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-5 file=1:5.38-5 findutils=4.7.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:9.2.1-3.1 g++-9=9.3.0-14 gcc=4:9.2.1-3.1 gcc-10-base=10.1.0-4 gcc-9=9.3.0-14 gcc-9-base=9.3.0-14 gdal-data=3.1.0+dfsg-1 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gfortran-9=9.3.0-14 grep=3.4-1 groff-base=1.22.4-5 gzip=1.10-2 hdf5-helpers=1.10.6+repack-2 hostname=3.23 ibverbs-providers=29.0-1 icu-devtools=67.1-2 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libaec-dev=1.0.4-1 libaec0=1.0.4-1 libaom0=1.0.0.errata1-3 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-1 libarmadillo-dev=1:9.900.1+dfsg-1+b1 libarmadillo9=1:9.900.1+dfsg-1+b1 libarpack2=3.7.0-3 libarpack2-dev=3.7.0-3 libasan5=9.3.0-14 libatomic1=10.1.0-4 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libavcodec-dev=7:4.3-2 libavcodec58=7:4.3-2 libavformat-dev=7:4.3-2 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libxcb-render0=1.14-2 libxcb-shm0=1.14-2 libxcb-sync1=1.14-2 libxcb-xfixes0=1.14-2 libxcb1=1.14-2 libxcb1-dev=1.14-2 libxdamage1=1:1.1.5-2 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxerces-c-dev=3.2.3+debian-1+b1 libxerces-c3.2=3.2.3+debian-1+b1 libxext-dev=2:1.3.3-1+b2 libxext6=2:1.3.3-1+b2 libxfixes3=1:5.0.3-2 libxft-dev=2.3.2-2 libxft2=2.3.2-2 libxml2=2.9.10+dfsg-5+b1 libxml2-dev=2.9.10+dfsg-5+b1 libxnvctrl0=440.82-1 libxrender-dev=1:0.9.10-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxss-dev=1:1.2.3-1 libxss1=1:1.2.3-1 libxt-dev=1:1.1.5-1+b3 libxt6=1:1.1.5-1+b3 libxvidcore4=2:1.3.7-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.8-1 libzmq5=4.3.2-2 libzstd-dev=1.4.5+dfsg-2 libzstd1=1.4.5+dfsg-2 libzvbi-common=0.2.35-18 libzvbi0=0.2.35-18 linux-libc-dev=5.6.14-2 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-3 man-db=2.9.3-1 mariadb-common=1:10.3.22-1 mawk=1.3.4.20200120-2 mpi-default-bin=1.13 mpi-default-dev=1.13 mysql-common=5.8+1.0.5 ncurses-base=6.2-1 ncurses-bin=6.2-1 nettle-dev=3.5.1+really3.5.1-2 ocl-icd-libopencl1=2.2.12-4 odbcinst=2.3.6-0.1+b1 odbcinst1debian2=2.3.6-0.1+b1 openmpi-bin=4.0.3-9 openmpi-common=4.0.3-9 openssh-client=1:8.3p1-1 passwd=1:4.8.1-1 patch=2.7.6-6 perl=5.30.3-4 perl-base=5.30.3-4 perl-modules-5.30=5.30.3-4 pkg-config=0.29.2-1 po-debconf=1.0.21 procps=2:3.3.16-5 proj-data=7.0.1-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 shared-mime-info=1.15-1 sysvinit-utils=2.96-3 tar=1.30+dfsg-7 ucf=3.0043 unixodbc-dev=2.3.6-0.1+b1 util-linux=2.35.2-4 uuid-dev=2.35.2-6 x11-common=1:7.7+20 x11proto-core-dev=2020.1-1 x11proto-dev=2020.1-1 x11proto-scrnsaver-dev=2020.1-1 x11proto-xext-dev=2020.1-1 xorg-sgml-doctools=1:1.11-1 xtrans-dev=1.4.0-1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200706T150013Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200625T083831Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d liggghts=3.8.0+repack1-7 && mkdir -p /build/liggghts-T4i5up && dpkg-source --no-check -x /*.dsc /build/liggghts-T4i5up/liggghts-3.8.0+repack1 && chown -R builduser:builduser /build/liggghts-T4i5up" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1593206674" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/liggghts-T4i5up /tmp/liggghts-3.8.0+repack1-7ao1lrkgn bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200625T083831Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.z7a5Jt1xEO as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.z7a5Jt1xEO Reading package lists... Building dependency tree... util-linux is already the newest version (2.35.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200625T083831Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200625T083831Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (602 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4569 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.30-8) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200706T150013Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200625T083831Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.z7a5Jt1xEO Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200706T150013Z unstable InRelease [146 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20200625T083831Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20200706T150013Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200706T150013Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200706T150013Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20200706T150013Z unstable/main amd64 Packages [11.2 MB] Fetched 33.9 MB in 28s (1195 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.z7a5Jt1xEO I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d liggghts=3.8.0+repack1-7 && mkdir -p /build/liggghts-T4i5up && dpkg-source --no-check -x /*.dsc /build/liggghts-T4i5up/liggghts-3.8.0+repack1 && chown -R builduser:builduser /build/liggghts-T4i5up"' exec /tmp/mmdebstrap.z7a5Jt1xEO Reading package lists... NOTICE: 'liggghts' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/liggghts.git Please use: git clone https://salsa.debian.org/science-team/liggghts.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6557 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main liggghts 3.8.0+repack1-7 (dsc) [2281 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main liggghts 3.8.0+repack1-7 (tar) [6545 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main liggghts 3.8.0+repack1-7 (diff) [10.4 kB] Fetched 6557 kB in 6s (1154 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'liggghts_3.8.0+repack1-7.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting liggghts in /build/liggghts-T4i5up/liggghts-3.8.0+repack1 dpkg-source: info: unpacking liggghts_3.8.0+repack1.orig.tar.xz dpkg-source: info: unpacking liggghts_3.8.0+repack1-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_add_cmake_files.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1593206674" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.z7a5Jt1xEO dpkg-buildpackage: info: source package liggghts dpkg-buildpackage: info: source version 3.8.0+repack1-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Anton Gladky dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build dh_auto_clean -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_autoreconf_clean -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_clean -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build debian/rules binary-arch dh binary-arch --buildsystem=cmake --builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build dh_update_autotools_config -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_autoreconf -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_auto_configure -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build cd debian/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ../.. -- The C compiler identification is GNU 9.3.0 -- The CXX compiler identification is GNU 9.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.71.0/BoostConfig.cmake (found version "1.71.0") found components: mpi serialization -- Could NOT find PythonLibs (missing: PYTHON_LIBRARIES PYTHON_INCLUDE_DIRS) -- The imported target "vtkHashSource" references the file "/usr/bin/vtkHashSource-6.3" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- The imported target "vtkParseOGLExt" references the file "/usr/bin/vtkParseOGLExt-6.3" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- The imported target "vtkEncodeString" references the file "/usr/bin/vtkEncodeString-6.3" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- The imported target "vtkGUISupportQt" references the file "/usr/lib/x86_64-linux-gnu/libvtkGUISupportQt-6.3.so.6.3.0" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- The imported target "vtkGUISupportQtOpenGL" references the file "/usr/lib/x86_64-linux-gnu/libvtkGUISupportQtOpenGL-6.3.so.6.3.0" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- The imported target "vtkGUISupportQtSQL" references the file "/usr/lib/x86_64-linux-gnu/libvtkGUISupportQtSQL-6.3.so.6.3.0" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- The imported target "vtkViewsQt" references the file "/usr/lib/x86_64-linux-gnu/libvtkViewsQt-6.3.so.6.3.0" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- The imported target "vtkGUISupportQtWebkit" references the file "/usr/lib/x86_64-linux-gnu/libvtkGUISupportQtWebkit-6.3.so.6.3.0" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- The imported target "vtkRenderingQt" references the file "/usr/lib/x86_64-linux-gnu/libvtkRenderingQt-6.3.so.6.3.0" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- Found VTK6 -- Found Eigen3 -- Found JPEG: /usr/lib/x86_64-linux-gnu/libjpeg.so (found version "62") -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") CMake Warning (dev) in CMakeLists.txt: A logical block opening on the line /build/liggghts-T4i5up/liggghts-3.8.0+repack1/CMakeLists.txt:61 (IF) closes on the line /build/liggghts-T4i5up/liggghts-3.8.0+repack1/CMakeLists.txt:77 (ENDIF) with mis-matching arguments. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build dh_auto_build -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build cd debian/build && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' /usr/bin/cmake -S/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -B/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/CMakeFiles /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/GenerateHeaders.dir/build.make src/CMakeFiles/GenerateHeaders.dir/depend make[3]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/liggghts-T4i5up/liggghts-3.8.0+repack1 /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src/CMakeFiles/GenerateHeaders.dir/DependInfo.cmake --color= Scanning dependencies of target GenerateHeaders make[3]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/GenerateHeaders.dir/build.make src/CMakeFiles/GenerateHeaders.dir/build make[3]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src && sh Make.sh style cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src && sh Make.sh models Generating model list, this could take a moment... You have 3240 model combinations. (limit = 1200) Some model combinations are skipped automatically. You may add missing combinations by yourself to 'style_contact_model_user.whitelist'. Creating list of contact models completed. make[3]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' [ 0%] Built target GenerateHeaders make -f src/CMakeFiles/libliggghts.dir/build.make src/CMakeFiles/libliggghts.dir/depend make[3]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/liggghts-T4i5up/liggghts-3.8.0+repack1 /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src/CMakeFiles/libliggghts.dir/DependInfo.cmake --color= Scanning dependencies of target libliggghts make[3]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/libliggghts.dir/build.make src/CMakeFiles/libliggghts.dir/build make[3]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' [ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/atom.cpp.o [ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_map.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom.cpp [ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/angle_hybrid.cpp.o [ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/angle.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_map.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_map.cpp cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/angle.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/angle.cpp cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/angle_hybrid.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/angle_hybrid.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/angle_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/angle_hybrid.cpp:363:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 363 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/angle_hybrid.cpp:372:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 372 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/angle_hybrid.cpp:375:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 375 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_vec.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_vec.cpp [ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_atomic.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_atomic.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_vec_atomic.cpp [ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_charge.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_charge.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_vec_charge.cpp [ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_vec_ellipsoid.cpp [ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_full.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_full.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_vec_full.cpp [ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_hybrid.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_hybrid.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_vec_hybrid.cpp [ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_vec_line.cpp [ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_vec_molecular.cpp [ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sph.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sph_var.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_vec_sph_var.cpp [ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_vec_sphere_w.cpp [ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_superquadric.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_superquadric.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_vec_superquadric.cpp [ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_tri.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_tri.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom_vec_tri.cpp [ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/bond.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/bond.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/bond.cpp [ 6%] Building CXX object src/CMakeFiles/libliggghts.dir/bond_harmonic.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/bond_harmonic.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/bond_harmonic.cpp [ 6%] Building CXX object src/CMakeFiles/libliggghts.dir/bond_hybrid.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/bond_hybrid.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/bond_hybrid.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/bond_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/bond_harmonic.cpp:200:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 200 | fread(&k[1],sizeof(double),atom->nbondtypes,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/bond_harmonic.cpp:201:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 201 | fread(&r0[1],sizeof(double),atom->nbondtypes,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/bond_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:351:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 351 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:360:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 360 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:363:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 363 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/libliggghts.dir/bounding_box.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/bounding_box.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/bounding_box.cpp [ 7%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_datacoupling.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/cfd_datacoupling_file.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/cfd_datacoupling_file.cpp [ 7%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_datacoupling_mpi.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/cfd_datacoupling_mpi.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/cfd_datacoupling_mpi.cpp [ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_regionmodel_none.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/cfd_regionmodel_none.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/cfd_regionmodel_none.cpp [ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/change_box.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/comm.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/comm.cpp [ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/compute.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_atom_molecule.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_atom_molecule.cpp [ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_bond_local.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_bond_local.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_bond_local.cpp [ 10%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_centro_atom.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_centro_atom.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_centro_atom.cpp [ 10%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_cluster_atom.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_com.cpp [ 11%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_com_molecule.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_contact_atom.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_contact_atom.cpp [ 12%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_contact_atom_gran.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_contact_atom_gran.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_contact_atom_gran.cpp [ 12%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_coord_atom.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_coord_atom.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_coord_atom.cpp [ 12%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_displace_atom.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_displace_atom.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_displace_atom.cpp [ 13%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ 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src/CMakeFiles/libliggghts.dir/compute_erotate_asphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_erotate_asphere.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_erotate_asphere.cpp [ 13%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate_multisphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_erotate_multisphere.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_erotate_multisphere.cpp [ 13%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate_sphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_erotate_sphere.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_erotate_sphere.cpp [ 14%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate_sphere_atom.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_erotate_sphere_atom.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_erotate_sphere_atom.cpp [ 14%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_erotate_superquadric.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_erotate_superquadric.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_erotate_superquadric.cpp [ 14%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_group_group.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK 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src/CMakeFiles/libliggghts.dir/compute_gyration.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_gyration.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_gyration.cpp [ 15%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_gyration_molecule.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat 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-I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_inertia_molecule.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_inertia_molecule.cpp [ 16%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_ke.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_ke.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_ke.cpp [ 16%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_ke_atom.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_ke_atom.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_ke_atom.cpp [ 16%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_ke_multisphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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src/CMakeFiles/libliggghts.dir/compute_msd_molecule.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_msd_molecule.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_msd_molecule.cpp [ 17%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_nparticles_tracer_region.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_nparticles_tracer_region.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_nparticles_tracer_region.cpp [ 18%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_pair_gran_local.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_pair_gran_local.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_pair_gran_local.cpp [ 18%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_pe.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_property_atom.cpp [ 19%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_property_local.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_property_local.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_property_local.cpp [ 19%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_property_molecule.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_property_molecule.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_property_molecule.cpp [ 20%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_rdf.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_rdf.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_rdf.cpp [ 20%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_reduce.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_reduce.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_reduce.cpp [ 20%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_reduce_region.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_reduce_region.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_reduce_region.cpp [ 21%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_rigid.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_slice.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_slice.cpp [ 21%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_stress_atom.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/compute_temp.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/compute_temp.cpp [ 22%] Building CXX object src/CMakeFiles/libliggghts.dir/contact_models.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/contact_models.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/contact_models.cpp [ 22%] Building CXX object src/CMakeFiles/libliggghts.dir/container_base.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/container_base.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/container_base.cpp [ 22%] Building CXX object src/CMakeFiles/libliggghts.dir/create_atoms.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/create_atoms.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/create_atoms.cpp [ 23%] Building CXX object src/CMakeFiles/libliggghts.dir/create_box.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/custom_value_tracker.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/custom_value_tracker.cpp [ 23%] Building CXX object src/CMakeFiles/libliggghts.dir/delete_atoms.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/delete_atoms.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/delete_atoms.cpp [ 24%] Building CXX object src/CMakeFiles/libliggghts.dir/delete_bonds.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/delete_bonds.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/delete_bonds.cpp [ 24%] Building CXX object src/CMakeFiles/libliggghts.dir/dihedral.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dihedral.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dihedral.cpp [ 24%] Building CXX object src/CMakeFiles/libliggghts.dir/dihedral_hybrid.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dihedral_hybrid.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp [ 25%] Building CXX object src/CMakeFiles/libliggghts.dir/displace_atoms.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/displace_atoms.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/displace_atoms.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:352:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 352 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:361:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 361 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:364:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 364 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/libliggghts.dir/domain.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/domain.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/domain.cpp [ 25%] Building CXX object src/CMakeFiles/libliggghts.dir/dump.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump.cpp [ 26%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_atom_vtk.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_atom_vtk.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_atom_vtk.cpp [ 26%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_custom.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_custom.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_custom.cpp [ 26%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_custom_vtk.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_custom_vtk.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_custom_vtk.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_custom_vtm.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_custom_vtm.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_custom_vtm.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_atom_vtk.cpp: In member function ‘void LAMMPS_NS::DumpATOMVTK::setFileCurrent()’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_atom_vtk.cpp:367:36: warning: ‘s’ directive writing 1 byte into a region of size between 0 and 7 [-Wformat-overflow=] 367 | sprintf(pad,"%%s%%0%d_%%d%s%%s",padflag,&bif[1]); | ^ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /usr/include/c++/9/ext/string_conversions.h:43, from /usr/include/c++/9/bits/basic_string.h:6493, from /usr/include/c++/9/string:55, from /usr/include/c++/9/stdexcept:39, from /usr/include/c++/9/array:39, from /usr/include/c++/9/tuple:39, from /usr/include/c++/9/bits/stl_map.h:63, from /usr/include/c++/9/map:61, from /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42, from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2868, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump.h:49, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_atom_vtk.h:48, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_atom_vtk.cpp:40: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 11 and 28 bytes into a destination of size 16 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_decomposition_vtk.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_euler_vtk.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_euler_vtk.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_euler_vtk.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_image.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_image.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_image.cpp [ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_local.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_local.cpp [ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local_gran.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_local_gran_vtk.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_local_gran_vtk.cpp [ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_mesh.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_mesh.cpp [ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_stl.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_mesh_stl.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_mesh_stl.cpp [ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_vtk.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_mesh_vtk.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_mesh_vtk.cpp [ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_vtm.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_mesh_vtm.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_mesh_vtm.cpp [ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_movie.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_vtk.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_xyz.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/dump_xyz.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/dump_xyz.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/error.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/error.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/error.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/finish.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/finish.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/finish.cpp [ 32%] Building CXX object src/CMakeFiles/libliggghts.dir/fix.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix.cpp [ 32%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_adapt.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_adapt.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_adapt.cpp [ 32%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_addforce.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_addforce.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_addforce.cpp [ 33%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_atom.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_atom.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_atom.cpp [ 33%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_correlate.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_correlate.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp [ 33%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_euler.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_euler.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_euler.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp: In member function ‘virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp:520:16: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 520 | ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_histo.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_histo.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp [ 34%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_spatial.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_spatial.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_spatial.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp: In member function ‘virtual void LAMMPS_NS::FixAveHisto::end_of_step()’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp:848:16: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 848 | ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_spatial.cpp: In member function ‘virtual void LAMMPS_NS::FixAveSpatial::end_of_step()’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_spatial.cpp:917:16: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 917 | ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_time.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS 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/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_aveforce.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_aveforce.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_time.cpp: In member function ‘void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_ave_time.cpp:670:16: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 670 | ftruncate(fileno(fp),fileend); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_base_liggghts.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_base_liggghts.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_base_liggghts.cpp [ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_box_relax.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_box_relax.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_box_relax.cpp [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_buoyancy.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_buoyancy.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_buoyancy.cpp [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling.cpp [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection.cpp [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_impl.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_impl.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_impl.cpp [ 37%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_species.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_species.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp [ 37%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_force.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_force.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_force.cpp [ 37%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_force_implicit.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_force_implicit.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_force_implicit.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp: In constructor ‘LAMMPS_NS::FixCfdCouplingConvectionSpecies::FixCfdCouplingConvectionSpecies(LAMMPS_NS::LAMMPS*, int, char**)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:75:40: warning: ‘Source’ directive writing 6 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 75 | sprintf(sourceName_, "%sSource",speciesName_); | ^~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /usr/include/c++/9/ext/string_conversions.h:43, from /usr/include/c++/9/bits/basic_string.h:6493, from /usr/include/c++/9/string:55, from /usr/include/c++/9/stdexcept:39, from /usr/include/c++/9/array:39, from /usr/include/c++/9/tuple:39, from /usr/include/c++/9/bits/stl_map.h:63, from /usr/include/c++/9/map:61, from /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42, from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2868, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pointers.h:63, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 134 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:76:40: warning: ‘Flux’ directive writing 4 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 76 | sprintf(convectiveFluxName_,"%sFlux",speciesName_); | ^~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /usr/include/c++/9/ext/string_conversions.h:43, from /usr/include/c++/9/bits/basic_string.h:6493, from /usr/include/c++/9/string:55, from /usr/include/c++/9/stdexcept:39, from /usr/include/c++/9/array:39, from /usr/include/c++/9/tuple:39, from /usr/include/c++/9/bits/stl_map.h:63, from /usr/include/c++/9/map:61, from /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42, from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2868, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pointers.h:63, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:77:40: warning: ‘Capacity’ directive writing 8 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 77 | sprintf(capacityName_, "%sCapacity",speciesName_); | ^~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /usr/include/c++/9/ext/string_conversions.h:43, from /usr/include/c++/9/bits/basic_string.h:6493, from /usr/include/c++/9/string:55, from /usr/include/c++/9/stdexcept:39, from /usr/include/c++/9/array:39, from /usr/include/c++/9/tuple:39, from /usr/include/c++/9/bits/stl_map.h:63, from /usr/include/c++/9/map:61, from /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42, from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2868, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pointers.h:63, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 9 and 136 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:78:40: warning: ‘STE’ directive writing 3 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 78 | sprintf(steName_, "%sSTE",speciesName_); | ^~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /usr/include/c++/9/ext/string_conversions.h:43, from /usr/include/c++/9/bits/basic_string.h:6493, from /usr/include/c++/9/string:55, from /usr/include/c++/9/stdexcept:39, from /usr/include/c++/9/array:39, from /usr/include/c++/9/tuple:39, from /usr/include/c++/9/bits/stl_map.h:63, from /usr/include/c++/9/map:61, from /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42, from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2868, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pointers.h:63, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 4 and 131 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:79:40: warning: ‘TotalFlux’ directive writing 9 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 79 | sprintf(totalFluxName_, "%sTotalFlux",speciesName_); | ^~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /usr/include/c++/9/ext/string_conversions.h:43, from /usr/include/c++/9/bits/basic_string.h:6493, from /usr/include/c++/9/string:55, from /usr/include/c++/9/stdexcept:39, from /usr/include/c++/9/array:39, from /usr/include/c++/9/tuple:39, from /usr/include/c++/9/bits/stl_map.h:63, from /usr/include/c++/9/map:61, from /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42, from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2868, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pointers.h:63, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 10 and 137 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:80:44: warning: ‘Fluid’ directive writing 5 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 80 | sprintf(speciesFluidName_, "%sFluid",speciesName_); | ^~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /usr/include/c++/9/ext/string_conversions.h:43, from /usr/include/c++/9/bits/basic_string.h:6493, from /usr/include/c++/9/string:55, from /usr/include/c++/9/stdexcept:39, from /usr/include/c++/9/array:39, from /usr/include/c++/9/tuple:39, from /usr/include/c++/9/bits/stl_map.h:63, from /usr/include/c++/9/map:61, from /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42, from /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:2868, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pointers.h:63, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/atom.h:49, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 6 and 133 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_check_timestep_gran.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_check_timestep_gran.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_check_timestep_gran.cpp [ 38%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_check_timestep_sph.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_check_timestep_sph.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_check_timestep_sph.cpp [ 38%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_history.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_history.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_contact_history.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_check_timestep_sph.cpp:63: warning: "BIG" redefined 63 | #define BIG 1000000. | In file included from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_neighbor_list_I.h:48, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_neighbor_list.h:183, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/surface_mesh.h:54, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/tri_mesh.h:47, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_mesh_surface.h:56, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_wall_gran.h:53, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_check_timestep_sph.cpp:52: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/domain_definitions.h:60: note: this is the location of the previous definition 60 | #define BIG 1.0e20 | [ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_history_mesh.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_history_mesh.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_contact_history_mesh.cpp [ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_property_atom.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_property_atom.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_contact_property_atom.cpp [ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_contact_property_atom_wall.cpp [ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_continuum_weighted.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_continuum_weighted.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_continuum_weighted.cpp [ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_deform.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_deform.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_deform.cpp [ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_deform_check.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_diam_max.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_diam_max.cpp [ 41%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_drag.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_dt_reset.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_dt_reset.cpp [ 41%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_efield.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_efield.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_efield.cpp [ 42%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_enforce2d.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_enforce2d.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_enforce2d.cpp [ 42%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_external.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_external.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_external.cpp [ 42%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_fiber_spring_simple.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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src/CMakeFiles/libliggghts.dir/fix_gravity.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_gravity.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_gravity.cpp [ 43%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_heat_gran.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_heat_gran.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_heat_gran.cpp [ 44%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_heat_gran_conduction.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_heat_gran_conduction.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_heat_gran_conduction.cpp [ 44%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_insert.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 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-I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_insert_pack.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_insert_pack.cpp [ 45%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_insert_rate_region.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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src/CMakeFiles/libliggghts.dir/fix_lb_coupling_onetoone.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_lb_coupling_onetoone.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_lb_coupling_onetoone.cpp [ 45%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_lineforce.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_lineforce.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_lineforce.cpp [ 46%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_massflow_mesh.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_massflow_mesh.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_massflow_mesh.cpp [ 46%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_massflow_mesh_sieve.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_massflow_mesh_sieve.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_massflow_mesh_sieve.cpp [ 46%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_mesh.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_mesh.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_mesh.cpp [ 47%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_mesh_surface.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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src/CMakeFiles/libliggghts.dir/fix_momentum.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_momentum.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_momentum.cpp [ 48%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_move.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_multicontact_halfspace.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_multicontact_halfspace.cpp [ 49%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_multisphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_multisphere_break.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_multisphere_break.cpp [ 49%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_multisphere_comm.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK 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src/CMakeFiles/libliggghts.dir/fix_neighlist_mesh.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_neighlist_mesh.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_neighlist_mesh.cpp [ 50%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_nve.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_nve.cpp [ 50%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_asphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_nve_asphere.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_nve_asphere.cpp [ 50%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_asphere_base.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_nve_asphere_base.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_nve_asphere_base.cpp [ 51%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_asphere_noforce.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_nve_asphere_noforce.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_nve_asphere_noforce.cpp [ 51%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_limit.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_nve_noforce.cpp [ 52%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_sph.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_nve_sph_stationary.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_nve_sph_stationary.cpp [ 53%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_sphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_nve_sphere.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_nve_sphere.cpp [ 53%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_nve_superquadric.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_nve_superquadric.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_nve_superquadric.cpp [ 53%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_particledistribution_discrete.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_particledistribution_discrete.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_particledistribution_discrete.cpp [ 54%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_planeforce.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB 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src/CMakeFiles/libliggghts.dir/fix_print.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_print.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_print.cpp [ 54%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_property_atom.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_property_atom.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_property_atom.cpp [ 54%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_property_atom_region_tracer.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_property_atom_region_tracer.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_property_atom_region_tracer.cpp [ 55%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_property_atom_tracer.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_property_atom_tracer.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_property_atom_tracer.cpp [ 55%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_property_atom_tracer_stream.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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src/CMakeFiles/libliggghts.dir/fix_read_restart.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_read_restart.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_read_restart.cpp [ 56%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_region_variable.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_region_variable.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_region_variable.cpp [ 56%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_respa.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_respa.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_respa.cpp [ 57%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_rigid.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_rigid.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_rigid.cpp [ 57%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_scalar_transport_equation.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_scalar_transport_equation.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_scalar_transport_equation.cpp [ 57%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_setforce.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_setforce.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_setforce.cpp [ 58%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_sph_density_continuity.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_sph_density_continuity.cpp [ 58%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph_density_corr.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_sph_density_corr.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_sph_density_corr.cpp [ 59%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph_density_summation.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_sph_density_summation.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_sph_density_summation.cpp [ 59%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph_pressure.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_sph_pressure.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_sph_pressure.cpp [ 59%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_spring.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_spring.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_spring.cpp [ 59%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_spring_rg.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_store.cpp.o -c 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-DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_store_force.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_store_force.cpp [ 61%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_store_state.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_store_state.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_store_state.cpp [ 61%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_template_multiplespheres.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_template_multiplespheres.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_template_multiplespheres.cpp [ 61%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_template_multisphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_template_multisphere.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_template_multisphere.cpp [ 62%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_template_sphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_template_sphere.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_template_sphere.cpp [ 62%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_template_superquadric.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_template_superquadric.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_template_superquadric.cpp [ 62%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_viscous.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_viscous.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_viscous.cpp [ 63%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_wall.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_wall.cpp [ 63%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall_gran.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_wall_gran.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_wall_gran.cpp [ 63%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall_region.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_wall_region.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_wall_region.cpp [ 63%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall_region_sph.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_wall_region_sph.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_wall_region_sph.cpp [ 64%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_wall_sph.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/fix_wall_sph.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/fix_wall_sph.cpp [ 64%] Building CXX object src/CMakeFiles/libliggghts.dir/force.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/global_properties.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/global_properties.cpp [ 65%] Building CXX object src/CMakeFiles/libliggghts.dir/granular_pair_style.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/granular_pair_style.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/granular_pair_style.cpp [ 65%] Building CXX object src/CMakeFiles/libliggghts.dir/granular_wall.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/granular_wall.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/granular_wall.cpp [ 65%] Building CXX object src/CMakeFiles/libliggghts.dir/group.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/group.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/group.cpp [ 66%] Building CXX object src/CMakeFiles/libliggghts.dir/image.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/image.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/image.cpp [ 66%] Building CXX object src/CMakeFiles/libliggghts.dir/improper.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/improper.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/improper.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/group.cpp: In member function ‘void LAMMPS_NS::Group::read_restart(FILE*)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/group.cpp:569:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 569 | if (me == 0) fread(&ngroup,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/group.cpp:581:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 581 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/group.cpp:585:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 585 | if (me == 0) fread(names[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/libliggghts.dir/improper_hybrid.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/improper_hybrid.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/improper_hybrid.cpp [ 67%] Building CXX object src/CMakeFiles/libliggghts.dir/info.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/info.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/info.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/improper_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/improper_hybrid.cpp:340:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 340 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/improper_hybrid.cpp:349:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 349 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/improper_hybrid.cpp:352:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 352 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/libliggghts.dir/input.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/input.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/input.cpp [ 67%] Building CXX object src/CMakeFiles/libliggghts.dir/input_mesh_tet.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/input_mesh_tet.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/input_mesh_tet.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/input.cpp: In member function ‘void LAMMPS_NS::Input::shell()’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/input.cpp:1124:10: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 1124 | chdir(arg[1]); | ~~~~~^~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/input.cpp:1170:24: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 1170 | if (me == 0) system(work); | ~~~~~~^~~~~~ [ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/input_mesh_tri.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/input_mesh_tri.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/input_mesh_tri.cpp [ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/input_multisphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/input_multisphere.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/input_multisphere.cpp [ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/integrate.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/irregular.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/irregular.cpp [ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/kspace.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/kspace.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/kspace.cpp [ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/lammps.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/lammps.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/lammps.cpp [ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/lattice.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/lattice.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/lattice.cpp [ 70%] Building CXX object src/CMakeFiles/libliggghts.dir/library.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/library.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/library.cpp [ 70%] Building CXX object src/CMakeFiles/libliggghts.dir/library_cfd_coupling.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/math_extra.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/math_extra.cpp [ 71%] Building CXX object src/CMakeFiles/libliggghts.dir/math_extra_liggghts_nonspherical.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/math_extra_liggghts_nonspherical.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/math_extra_liggghts_nonspherical.cpp [ 71%] Building CXX object src/CMakeFiles/libliggghts.dir/math_extra_liggghts_superquadric.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/math_extra_liggghts_superquadric.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/math_extra_liggghts_superquadric.cpp [ 71%] Building CXX object src/CMakeFiles/libliggghts.dir/memory.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/memory.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/memory.cpp In file included from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_gran_base.h:63, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/granular_styles.h:81, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/lammps.cpp:87: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/os_specific.h: In function ‘T* aligned_malloc(size_t) [with T = LIGGGHTS::ContactModels::SurfacesIntersectData]’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/os_specific.h:80:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 80 | posix_memalign(&ptr, alignment, sizeof(T)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/os_specific.h: In function ‘T* aligned_malloc(size_t) [with T = LIGGGHTS::ContactModels::ForceData]’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/os_specific.h:80:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’, declared with attribute warn_unused_result [-Wunused-result] [ 72%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_module.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/mesh_module.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/mesh_module.cpp [ 72%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_module_liquidtransfer.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/mesh_module_liquidtransfer.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/mesh_module_liquidtransfer.cpp [ 72%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_module_stress.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/mesh_module_stress.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/mesh_module_stress.cpp [ 72%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_module_stress_servo.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/mesh_module_stress_servo.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/mesh_module_stress_servo.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/mesh_module_stress_servo.cpp:67: warning: "BIG" redefined 67 | #define BIG 1000000. | In file included from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_neighbor_list_I.h:48, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_neighbor_list.h:183, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/surface_mesh.h:54, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/tri_mesh.h:47, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/mesh_module.h:44, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/mesh_module_stress.h:54, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/mesh_module_stress_servo.h:59, from /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/mesh_module_stress_servo.cpp:50: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/domain_definitions.h:60: note: this is the location of the previous definition 60 | #define BIG 1.0e20 | [ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/mesh_mover_linear.cpp [ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_mover_rotation.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/mesh_mover_rotation.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/mesh_mover_rotation.cpp [ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/min.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/min.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/min.cpp [ 74%] Building CXX object src/CMakeFiles/libliggghts.dir/min_cg.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/min_cg.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/min_cg.cpp [ 74%] Building CXX object src/CMakeFiles/libliggghts.dir/min_linesearch.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/min_linesearch.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/min_linesearch.cpp [ 74%] Building CXX object src/CMakeFiles/libliggghts.dir/minimize.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/minimize.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/minimize.cpp [ 75%] Building CXX object src/CMakeFiles/libliggghts.dir/modified_andrew.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/modified_andrew.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modified_andrew.cpp [ 75%] Building CXX object src/CMakeFiles/libliggghts.dir/modify.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/modify.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp [ 75%] Building CXX object src/CMakeFiles/libliggghts.dir/modify_liggghts.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/modify_liggghts.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify_liggghts.cpp [ 76%] Building CXX object src/CMakeFiles/libliggghts.dir/multisphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/multisphere.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/multisphere.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp: In member function ‘int LAMMPS_NS::Modify::read_restart(FILE*)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1197:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1197 | if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1213:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1213 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1216:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1216 | if (me == 0) fread(id_restart_global[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1219:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1219 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1222:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1222 | if (me == 0) fread(style_restart_global[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1225:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1225 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1228:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1228 | if (me == 0) fread(state_restart_global[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1236:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1236 | if (me == 0) fread(&nfix_restart_peratom,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1252:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1252 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1255:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1255 | if (me == 0) fread(id_restart_peratom[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1258:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1258 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1261:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1261 | if (me == 0) fread(style_restart_peratom[i],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/modify.cpp:1264:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1264 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/libliggghts.dir/multisphere_parallel.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/multisphere_parallel.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/multisphere_parallel.cpp [ 76%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_bond.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neigh_bond.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neigh_bond.cpp [ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_derive.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neigh_derive.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neigh_derive.cpp [ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neigh_dummy.cpp [ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_full.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neigh_full.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neigh_full.cpp [ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_gran.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neigh_gran.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neigh_gran.cpp [ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neigh_half_bin.cpp [ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_multi.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_multi.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neigh_half_multi.cpp [ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_nsq.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_nsq.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neigh_half_nsq.cpp [ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_list.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neigh_list.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neigh_list.cpp [ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_request.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neigh_request.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neigh_request.cpp [ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_respa.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neigh_respa.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neigh_respa.cpp [ 80%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_stencil.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neigh_stencil.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neigh_stencil.cpp [ 80%] Building CXX object src/CMakeFiles/libliggghts.dir/neighbor.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/neighbor.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/neighbor.cpp [ 80%] Building CXX object src/CMakeFiles/libliggghts.dir/output.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/output.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/output.cpp [ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/pair.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair.cpp [ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_gran.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/pair_gran.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_gran.cpp [ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_gran_proxy.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/pair_gran_proxy.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp [ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_hybrid.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_gran.cpp: In member function ‘virtual void LAMMPS_NS::PairGran::read_restart(FILE*, int, int)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_gran.cpp:763:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 763 | if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*, int, int)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:660:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:674:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 674 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:677:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 677 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp: In member function ‘virtual void LAMMPS_NS::PairGranProxy::read_restart_settings(FILE*, int, int)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp:99:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 99 | fread(&selected, sizeof(int64_t), 1, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_hybrid_overlay.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/pair_hybrid_overlay.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_hybrid_overlay.cpp [ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_line_lj.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/pair_line_lj.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_line_lj.cpp [ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_soft.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/pair_soft.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_soft.cpp [ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_sph.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/pair_sph.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_sph.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairSoft::read_restart(FILE*, int, int)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_soft.cpp:282:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 282 | if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_soft.cpp:286:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 286 | fread(&prefactor[i][j],sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_soft.cpp:287:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 287 | fread(&cut[i][j],sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairSoft::read_restart_settings(FILE*, int, int)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_soft.cpp:312:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 312 | fread(&cut_global,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_soft.cpp:313:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 313 | fread(&mix_flag,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_sph_artvisc_tenscorr.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/pair_sph_artvisc_tenscorr.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp [ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsert.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/particleToInsert.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/particleToInsert.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp: In member function ‘virtual void LAMMPS_NS::PairSphArtviscTenscorr::read_restart(FILE*, int, int)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp:300:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 300 | if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp: In member function ‘virtual void LAMMPS_NS::PairSphArtviscTenscorr::read_restart_settings(FILE*, int, int)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 322 | fread(&artVisc_flag,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp:323:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 323 | fread(&tensCorr_flag,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/particleToInsert_multisphere.cpp [ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/procmap.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/procmap.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/procmap.cpp [ 85%] Building CXX object src/CMakeFiles/libliggghts.dir/properties.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/properties.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/properties.cpp [ 85%] Building CXX object src/CMakeFiles/libliggghts.dir/property_registry.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/property_registry.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/property_registry.cpp [ 85%] Building CXX object src/CMakeFiles/libliggghts.dir/random.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/random.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/random.cpp [ 86%] Building CXX object src/CMakeFiles/libliggghts.dir/random_mars.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/random_mars.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/random_mars.cpp [ 86%] Building CXX object src/CMakeFiles/libliggghts.dir/random_park.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/read_data.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_data.cpp [ 86%] Building CXX object src/CMakeFiles/libliggghts.dir/read_dump.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/read_dump.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_dump.cpp [ 87%] Building CXX object src/CMakeFiles/libliggghts.dir/read_restart.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/read_restart.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::nread_int(int*, int, FILE*)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp:863:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 863 | fread(buf,sizeof(int),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::nread_double(double*, int, FILE*)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp:874:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 874 | fread(buf,sizeof(double),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::nread_char(char*, int, FILE*)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp:885:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 885 | fread(buf,sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘int LAMMPS_NS::ReadRestart::read_int()’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp:896:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 896 | fread(&value,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘double LAMMPS_NS::ReadRestart::read_double()’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp:911:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 911 | fread(&value,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘char* LAMMPS_NS::ReadRestart::read_char()’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp:927:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 927 | fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp:933:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 933 | fread(value,sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function ‘LAMMPS_NS::bigint LAMMPS_NS::ReadRestart::read_bigint()’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/read_restart.cpp:948:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 948 | fread(&value,sizeof(bigint),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/libliggghts.dir/reader.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/reader.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/reader.cpp [ 87%] Building CXX object src/CMakeFiles/libliggghts.dir/reader_native.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/reader_native.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/reader_native.cpp [ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/reader_xyz.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/reader_xyz.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/reader_xyz.cpp [ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/region.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/region.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region.cpp [ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/region_block.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/region_block.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_block.cpp [ 89%] Building CXX object src/CMakeFiles/libliggghts.dir/region_cone.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/region_cone.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_cone.cpp [ 89%] Building CXX object src/CMakeFiles/libliggghts.dir/region_cylinder.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/region_cylinder.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_cylinder.cpp [ 89%] Building CXX object src/CMakeFiles/libliggghts.dir/region_intersect.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/region_intersect.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_intersect.cpp [ 90%] Building CXX object src/CMakeFiles/libliggghts.dir/region_mesh_tet.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/region_mesh_tet.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_mesh_tet.cpp [ 90%] Building CXX object src/CMakeFiles/libliggghts.dir/region_neighbor_list.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/region_neighbor_list.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_neighbor_list.cpp [ 90%] Building CXX object src/CMakeFiles/libliggghts.dir/region_plane.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB 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src/CMakeFiles/libliggghts.dir/region_prism.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/region_prism.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_prism.cpp [ 91%] Building CXX object src/CMakeFiles/libliggghts.dir/region_sphere.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/region_sphere.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_sphere.cpp [ 91%] Building CXX object src/CMakeFiles/libliggghts.dir/region_union.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/region_union.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_union.cpp [ 91%] Building CXX object src/CMakeFiles/libliggghts.dir/region_wedge.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/region_wedge.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/region_wedge.cpp [ 92%] Building CXX object src/CMakeFiles/libliggghts.dir/replicate.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/replicate.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/replicate.cpp [ 92%] Building CXX object src/CMakeFiles/libliggghts.dir/respa.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/respa.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/respa.cpp [ 92%] Building CXX object src/CMakeFiles/libliggghts.dir/rotate.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS 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-DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/run.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/run.cpp [ 93%] Building CXX object src/CMakeFiles/libliggghts.dir/run_time.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/run_time.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/run_time.cpp [ 93%] Building CXX object src/CMakeFiles/libliggghts.dir/set.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/set.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/set.cpp [ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/signal_handling.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/signal_handling.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/signal_handling.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/signal_handling.cpp: In function ‘void LAMMPS_NS::SignalHandler::int_handler(int)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/signal_handling.cpp:65:18: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 65 | write(STDOUT_FILENO, warning.c_str(), len); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/signal_handling.cpp:72:14: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 72 | write(STDERR_FILENO, error.c_str(), len); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/signal_handling.cpp:89:14: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 89 | write(STDOUT_FILENO, warning.c_str(), len); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/signal_handling.cpp: In function ‘void LAMMPS_NS::SignalHandler::usr1_handler(int)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/signal_handling.cpp:108:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 108 | write(STDOUT_FILENO, warning.c_str(), len); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/sort_buffer.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/special.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/special.cpp [ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/superquadric.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/superquadric.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/superquadric.cpp [ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/tet_mesh.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/tet_mesh.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/tet_mesh.cpp [ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/thermo.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/thermo.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/thermo.cpp [ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/timer.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/timer.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/timer.cpp [ 96%] Building CXX object src/CMakeFiles/libliggghts.dir/tri_mesh.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/tri_mesh.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/tri_mesh.cpp [ 96%] Building CXX object src/CMakeFiles/libliggghts.dir/tri_mesh_planar.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/tri_mesh_planar.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/tri_mesh_planar.cpp [ 96%] Building CXX object src/CMakeFiles/libliggghts.dir/universe.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/universe.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/universe.cpp [ 97%] Building CXX object src/CMakeFiles/libliggghts.dir/update.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/update.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/update.cpp [ 97%] Building CXX object src/CMakeFiles/libliggghts.dir/variable.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/variable.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/variable.cpp [ 97%] Building CXX object src/CMakeFiles/libliggghts.dir/velocity.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -o CMakeFiles/libliggghts.dir/velocity.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/velocity.cpp /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/variable.cpp: In member function ‘int LAMMPS_NS::Variable::next(int, char**)’: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/variable.cpp:534:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 534 | fscanf(fp,"%d",&nextindex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object src/CMakeFiles/libliggghts.dir/verlet.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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CMakeFiles/libliggghts.dir/tet_mesh.cpp.o CMakeFiles/libliggghts.dir/thermo.cpp.o CMakeFiles/libliggghts.dir/timer.cpp.o CMakeFiles/libliggghts.dir/tri_mesh.cpp.o CMakeFiles/libliggghts.dir/tri_mesh_planar.cpp.o CMakeFiles/libliggghts.dir/universe.cpp.o CMakeFiles/libliggghts.dir/update.cpp.o CMakeFiles/libliggghts.dir/variable.cpp.o CMakeFiles/libliggghts.dir/velocity.cpp.o CMakeFiles/libliggghts.dir/verlet.cpp.o CMakeFiles/libliggghts.dir/write_data.cpp.o CMakeFiles/libliggghts.dir/write_dump.cpp.o CMakeFiles/libliggghts.dir/write_restart.cpp.o -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib: /usr/lib/x86_64-linux-gnu/libboost_mpi.so.1.71.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.71.0 -ljpeg /usr/lib/x86_64-linux-gnu/libvtkChartsCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkInfovisCore-6.3.so.6.3.0 -lfreetype -lz /usr/lib/x86_64-linux-gnu/libvtkViewsContext2D-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkViewsCore-6.3.so.6.3.0 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-ljsoncpp /usr/lib/x86_64-linux-gnu/libvtkParallelMPI-6.3.so.6.3.0 -lmpi -lmpi_cxx -lmpi -lmpi_cxx /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkftgl-6.3.so.6.3.0 -lfreetype /usr/lib/x86_64-linux-gnu/libvtkImagingHybrid-6.3.so.6.3.0 -lGL -lGLU -lSM -lICE -lX11 -lXext -lXt /usr/lib/x86_64-linux-gnu/libvtkIOImage-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkDICOMParser-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkmetaio-6.3.so.6.3.0 -lz /usr/lib/x86_64-linux-gnu/libvtkIOXML-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOGeometry-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOXMLParser-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonColor-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersExtraction-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersStatistics-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingFourier-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkalglib-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeometry-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersModeling-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonComputationalGeometry-6.3.so.6.3.0 -lnetcdf_c++ -lnetcdf /usr/lib/x86_64-linux-gnu/libvtkParallelCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOLegacy-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonSystem-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtksys-6.3.so.6.3.0 -ldl cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/cmake -E cmake_symlink_library libliggghts.so.3.8.0 libliggghts.so.3 libliggghts.so make[3]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' [ 99%] Built target libliggghts make -f src/CMakeFiles/liggghts.dir/build.make src/CMakeFiles/liggghts.dir/depend make[3]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/liggghts-T4i5up/liggghts-3.8.0+repack1 /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src/CMakeFiles/liggghts.dir/DependInfo.cmake --color= Scanning dependencies of target liggghts make[3]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/liggghts.dir/build.make src/CMakeFiles/liggghts.dir/build make[3]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' [ 99%] Building CXX object src/CMakeFiles/liggghts.dir/main.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -I/build/liggghts-T4i5up/liggghts-3.8.0+repack1/src -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -o CMakeFiles/liggghts.dir/main.cpp.o -c /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src/main.cpp [100%] Linking CXX executable liggghts cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/liggghts.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/liggghts.dir/main.cpp.o -o liggghts -Wl,-rpath,/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib: libliggghts.so.3.8.0 /usr/lib/x86_64-linux-gnu/libboost_mpi.so.1.71.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.71.0 -ljpeg /usr/lib/x86_64-linux-gnu/libvtkChartsCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkInfovisCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkViewsContext2D-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkViewsCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersHybrid-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingGeneral-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-6.3.so.6.3.0 -lpng -ltiff 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/usr/lib/x86_64-linux-gnu/libvtkIOXMLParser-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersParallel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonColor-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersExtraction-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersStatistics-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingFourier-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkalglib-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeometry-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersModeling-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonComputationalGeometry-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIONetCDF-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so -lsz -ldl -lm /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libvtkexoIIc-6.3.so.6.3.0 -lnetcdf_c++ -lnetcdf -ljsoncpp /usr/lib/x86_64-linux-gnu/libvtkParallelMPI-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkParallelCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOLegacy-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonSystem-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtksys-6.3.so.6.3.0 -ldl -lmpi -lmpi_cxx -lmpi -lmpi_cxx make[3]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' [100%] Built target liggghts make[2]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' /usr/bin/cmake -E cmake_progress_start /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/CMakeFiles 0 make[1]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1' mkdir test cp -r examples/LIGGGHTS/Tutorials_public/heatTransfer_1/* test/ cd test; mpirun -np 2 --allow-run-as-root --oversubscribe /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src/liggghts < in.heatGran LIGGGHTS (Version LIGGGHTS-PUBLIC 3.8.0, compiled 2021-10-14-01:38:38 by builduser, git commit unknown) Created orthogonal box = (-0.05 -0.05 0) to (0.05 0.05 0.15) 1 by 1 by 2 MPI processor grid Fix particledistribution/discrete (id pdd1): distribution based on mass%: pts1: d=8.000000e-03 (max. bounding sphere) mass%=100.000000% Fix particledistribution/discrete (id pdd1): distribution based on number%: pts1: d=8.000000e-03 (max. bounding sphere) number%=100.000000% Setting up run at Thu Oct 14 02:10:15 2021 INFO: Resetting random generator for region bc INFO: Particle insertion ins: inserting every 0 steps Memory usage per processor = 4.29641 Mbytes Step Atoms KinEng rke heattran Volume 0 0 0 0 0 0.0015 insertion: proc 1 at 0 % insertion: proc 1 at 10 % insertion: proc 0 at 0 % insertion: proc 0 at 10 % insertion: proc 0 at 20 % insertion: proc 1 at 20 % insertion: proc 0 at 30 % insertion: proc 1 at 30 % insertion: proc 0 at 40 % insertion: proc 1 at 40 % insertion: proc 0 at 50 % insertion: proc 1 at 50 % insertion: proc 0 at 60 % insertion: proc 1 at 60 % insertion: proc 1 at 70 % insertion: proc 0 at 70 % insertion: proc 1 at 80 % insertion: proc 0 at 80 % insertion: proc 1 at 90 % insertion: proc 0 at 90 % insertion: proc 1 at 100 % insertion: proc 0 at 100 % INFO: Particle insertion ins: inserted 889 particle templates (mass 1.906603e+00) at step 1 - a total of 889 particle templates (mass 1.906603e+00) inserted so far. 1 889 0.0858673 0 5719.8098 0.0015 Loop time of 0.0171826 on 2 procs for 1 steps with 889 atoms, finish time Thu Oct 14 02:10:15 2021 Pair time (%) = 3.2558e-05 (0.189483) Neigh time (%) = 0.000598923 (3.48565) Comm time (%) = 0.00026809 (1.56025) Outpt time (%) = 4.1527e-05 (0.241681) Other time (%) = 0.0162415 (94.5229) Nlocal: 444.5 ave 446 max 443 min Histogram: 1 0 0 0 0 0 0 0 0 1 Nghost: 53.5 ave 55 max 52 min Histogram: 1 0 0 0 0 0 0 0 0 1 Neighs: 677.5 ave 692 max 663 min Histogram: 1 0 0 0 0 0 0 0 0 1 Total # of neighbors = 1355 Ave neighs/atom = 1.52418 Neighbor list builds = 1 Dangerous builds = 0 Setting up run at Thu Oct 14 02:10:15 2021 Memory usage per processor = 8.42521 Mbytes Step Atoms KinEng rke heattran Volume 1 889 0.0858673 0 5719.8098 0.0015 1000 889 0.24513315 0.00028749395 5719.8098 0.0015 2000 889 0.41448052 0.0011292267 5719.8098 0.0015 3000 889 0.499185 0.0020564748 5719.8098 0.0015 4000 889 0.31640464 0.0039072055 5719.8098 0.0015 5000 889 0.025728568 0.0031537134 5719.8098 0.0015 6000 889 0.0066287838 0.0017750363 5719.8098 0.0015 7000 889 0.0056666661 0.0011144246 5719.8098 0.0015 8000 889 0.0035001128 0.00068883305 5719.8098 0.0015 9000 889 0.001874252 0.00041791814 5719.8098 0.0015 10000 889 0.0011194605 0.00026336617 5719.8098 0.0015 11000 889 0.00028190569 0.00014289112 5719.8098 0.0015 12000 889 0.00021361459 8.3137013e-05 5719.8098 0.0015 13000 889 0.00010832404 4.2427322e-05 5719.8098 0.0015 14000 889 6.9512993e-05 2.3729214e-05 5719.8098 0.0015 15000 889 2.7899973e-05 1.146997e-05 5719.8098 0.0015 16000 889 7.2323469e-05 1.5151257e-05 5719.8098 0.0015 17000 889 3.2147222e-05 1.2263866e-05 5719.8098 0.0015 18000 889 1.9134527e-05 9.6788056e-06 5719.8098 0.0015 19000 889 4.4217855e-06 3.7107113e-06 5719.8098 0.0015 20000 889 2.3496863e-06 2.5381488e-06 5719.8098 0.0015 Loop time of 60.4205 on 2 procs for 19999 steps with 889 atoms, finish time Thu Oct 14 02:11:15 2021 Pair time (%) = 14.3328 (23.7217) Neigh time (%) = 0.257438 (0.426077) Comm time (%) = 7.7116 (12.7632) Outpt time (%) = 0.744644 (1.23244) Other time (%) = 37.374 (61.8565) Nlocal: 444.5 ave 889 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 1 Nghost: 0 ave 0 max 0 min Histogram: 2 0 0 0 0 0 0 0 0 0 Neighs: 2066.5 ave 4133 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 1 Total # of neighbors = 4133 Ave neighs/atom = 4.64904 Neighbor list builds = 184 Dangerous builds = 0 Setting atom values ... 440 settings made for property/atom Setting up run at Thu Oct 14 02:11:15 2021 Memory usage per processor = 8.72219 Mbytes Step Atoms KinEng rke heattran Volume 20000 889 2.3496863e-06 2.5381488e-06 10438.063 0.0015 21000 889 1.0436132e-06 1.5046063e-06 10438.063 0.0015 22000 889 7.4104702e-07 5.7218783e-07 10438.063 0.0015 23000 889 7.3927769e-07 4.6257436e-07 10438.063 0.0015 24000 889 9.4235914e-07 7.5388085e-07 10438.063 0.0015 25000 889 3.7081363e-06 1.7709857e-06 10438.063 0.0015 26000 889 3.9511941e-06 1.4323564e-06 10438.063 0.0015 27000 889 2.3998039e-07 1.3860278e-07 10438.063 0.0015 28000 889 4.0284459e-08 3.3788398e-08 10438.063 0.0015 29000 889 2.1089594e-08 2.6144051e-08 10438.063 0.0015 30000 889 1.4146237e-08 2.4905017e-08 10438.063 0.0015 31000 889 9.6351465e-09 2.4174491e-08 10438.063 0.0015 32000 889 7.9202469e-09 2.3934581e-08 10438.063 0.0015 33000 889 7.9549599e-09 2.3850282e-08 10438.063 0.0015 34000 889 8.2645169e-09 2.3762126e-08 10438.063 0.0015 35000 889 6.0680201e-09 1.8482029e-08 10438.063 0.0015 36000 889 5.7083658e-09 1.8444568e-08 10438.063 0.0015 37000 889 5.17788e-09 1.8387992e-08 10438.063 0.0015 38000 889 4.7690407e-09 1.8377249e-08 10438.063 0.0015 39000 889 4.4446861e-09 1.8351042e-08 10438.063 0.0015 40000 889 4.2439403e-09 1.8307304e-08 10438.063 0.0015 41000 889 4.1561155e-09 1.8271947e-08 10438.063 0.0015 42000 889 4.254111e-09 1.8281401e-08 10438.063 0.0015 43000 889 4.291908e-09 1.8271443e-08 10438.063 0.0015 44000 889 4.2795268e-09 1.8270757e-08 10438.063 0.0015 45000 889 4.2053977e-09 1.8262942e-08 10438.063 0.0015 46000 889 4.136915e-09 1.8259562e-08 10438.063 0.0015 47000 889 4.102735e-09 1.825755e-08 10438.063 0.0015 48000 889 4.1028794e-09 1.8257014e-08 10438.063 0.0015 49000 889 4.1101685e-09 1.8256258e-08 10438.063 0.0015 50000 889 2.8053107e-09 1.4643392e-08 10438.063 0.0015 Loop time of 104.084 on 2 procs for 30000 steps with 889 atoms, finish time Thu Oct 14 02:12:59 2021 Pair time (%) = 25.1291 (24.1431) Neigh time (%) = 0.00113626 (0.00109167) Comm time (%) = 0.181185 (0.174076) Outpt time (%) = 1.47443 (1.41658) Other time (%) = 77.2983 (74.2652) Nlocal: 444.5 ave 889 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 1 Nghost: 0 ave 0 max 0 min Histogram: 2 0 0 0 0 0 0 0 0 0 Neighs: 2066.5 ave 4133 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 1 Total # of neighbors = 4133 Ave neighs/atom = 4.64904 Neighbor list builds = 2 Dangerous builds = 0 rm -rf test mkdir test cp -r examples/LIGGGHTS/Tutorials_public/heatTransfer_1/* test/ cd test; /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src/liggghts < in.heatGran LIGGGHTS (Version LIGGGHTS-PUBLIC 3.8.0, compiled 2021-10-14-01:38:38 by builduser, git commit unknown) Created orthogonal box = (-0.05 -0.05 0) to (0.05 0.05 0.15) 1 by 1 by 1 MPI processor grid Fix particledistribution/discrete (id pdd1): distribution based on mass%: pts1: d=8.000000e-03 (max. bounding sphere) mass%=100.000000% Fix particledistribution/discrete (id pdd1): distribution based on number%: pts1: d=8.000000e-03 (max. bounding sphere) number%=100.000000% Setting up run at Thu Oct 14 02:13:00 2021 INFO: Resetting random generator for region bc INFO: Particle insertion ins: inserting every 0 steps Memory usage per processor = 4.33364 Mbytes Step Atoms KinEng rke heattran Volume 0 0 0 0 0 0.0015 insertion: proc 0 at 0 % insertion: proc 0 at 10 % insertion: proc 0 at 20 % insertion: proc 0 at 30 % insertion: proc 0 at 40 % insertion: proc 0 at 50 % insertion: proc 0 at 60 % insertion: proc 0 at 70 % insertion: proc 0 at 80 % insertion: proc 0 at 90 % INFO: Particle insertion ins: inserted 890 particle templates (mass 1.908748e+00) at step 1 - a total of 890 particle templates (mass 1.908748e+00) inserted so far. 1 890 0.085963889 0 5726.2438 0.0015 Loop time of 0.0232019 on 1 procs for 1 steps with 890 atoms, finish time Thu Oct 14 02:13:00 2021 Pair time (%) = 4.2408e-05 (0.182778) Neigh time (%) = 0.000688011 (2.96532) Comm time (%) = 1.6208e-05 (0.0698563) Outpt time (%) = 3.2211e-05 (0.138829) Other time (%) = 0.0224231 (96.6432) Nlocal: 890 ave 890 max 890 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1377 ave 1377 max 1377 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1377 Ave neighs/atom = 1.54719 Neighbor list builds = 1 Dangerous builds = 0 Setting up run at Thu Oct 14 02:13:00 2021 Memory usage per processor = 8.46413 Mbytes Step Atoms KinEng rke heattran Volume 1 890 0.085963889 0 5726.2438 0.0015 1000 890 0.24827796 0.00022041163 5726.2438 0.0015 2000 890 0.4310526 0.0010095459 5726.2438 0.0015 3000 890 0.49526899 0.0024747088 5726.2438 0.0015 4000 890 0.31586477 0.0035252599 5726.2438 0.0015 5000 890 0.027567867 0.0029390079 5726.2438 0.0015 6000 890 0.0070080804 0.0017166111 5726.2438 0.0015 7000 890 0.0063160632 0.0011228234 5726.2438 0.0015 8000 890 0.0040208534 0.00067254899 5726.2438 0.0015 9000 890 0.0018449852 0.00036272343 5726.2438 0.0015 10000 890 0.00051640311 0.00019950714 5726.2438 0.0015 11000 890 0.00025739941 0.00010329878 5726.2438 0.0015 12000 890 0.00015870349 5.3061439e-05 5726.2438 0.0015 13000 890 4.5130974e-05 2.5805459e-05 5726.2438 0.0015 14000 890 2.057305e-05 1.2246036e-05 5726.2438 0.0015 15000 890 1.0229663e-05 6.1239195e-06 5726.2438 0.0015 16000 890 1.1836456e-05 6.5531492e-06 5726.2438 0.0015 17000 890 1.199114e-05 6.2253346e-06 5726.2438 0.0015 18000 890 1.4676598e-05 7.0850812e-06 5726.2438 0.0015 19000 890 3.7770954e-06 4.6853468e-06 5726.2438 0.0015 20000 890 5.3031725e-07 1.3357401e-06 5726.2438 0.0015 Loop time of 20.985 on 1 procs for 19999 steps with 890 atoms, finish time Thu Oct 14 02:13:21 2021 Pair time (%) = 12.849 (61.2293) Neigh time (%) = 0.192677 (0.918166) Comm time (%) = 0.0205892 (0.098114) Outpt time (%) = 0.607202 (2.8935) Other time (%) = 7.31556 (34.8609) Nlocal: 890 ave 890 max 890 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 4118 ave 4118 max 4118 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 4118 Ave neighs/atom = 4.62697 Neighbor list builds = 176 Dangerous builds = 0 Setting atom values ... 445 settings made for property/atom Setting up run at Thu Oct 14 02:13:21 2021 Memory usage per processor = 8.75284 Mbytes Step Atoms KinEng rke heattran Volume 20000 890 5.3031725e-07 1.3357401e-06 10498.114 0.0015 21000 890 1.931194e-06 2.7194871e-07 10498.114 0.0015 22000 890 2.1622657e-07 1.1871934e-07 10498.114 0.0015 23000 890 4.139228e-08 6.9698787e-08 10498.114 0.0015 24000 890 2.9822986e-08 5.624103e-08 10498.114 0.0015 25000 890 2.9998078e-08 5.4893623e-08 10498.114 0.0015 26000 890 2.8354189e-08 5.4403467e-08 10498.114 0.0015 27000 890 2.2910201e-08 4.628973e-08 10498.114 0.0015 28000 890 2.1016702e-08 4.601871e-08 10498.114 0.0015 29000 890 2.043904e-08 4.5550665e-08 10498.114 0.0015 30000 890 2.0144661e-08 4.5453503e-08 10498.114 0.0015 31000 890 1.9989362e-08 4.547914e-08 10498.114 0.0015 32000 890 1.9654556e-08 4.5440639e-08 10498.114 0.0015 33000 890 1.9363505e-08 4.5408868e-08 10498.114 0.0015 34000 890 1.6477736e-08 4.1039059e-08 10498.114 0.0015 35000 890 1.0931865e-08 3.1686346e-08 10498.114 0.0015 36000 890 1.1265562e-08 3.0655356e-08 10498.114 0.0015 37000 890 1.1222353e-08 3.0644949e-08 10498.114 0.0015 38000 890 1.113119e-08 3.0639608e-08 10498.114 0.0015 39000 890 1.105555e-08 3.0633121e-08 10498.114 0.0015 40000 890 1.0929592e-08 3.0446528e-08 10498.114 0.0015 41000 890 1.0904422e-08 3.0432211e-08 10498.114 0.0015 42000 890 1.0932575e-08 3.044067e-08 10498.114 0.0015 43000 890 1.0910567e-08 3.0435113e-08 10498.114 0.0015 44000 890 1.0899619e-08 3.0433998e-08 10498.114 0.0015 45000 890 9.0295873e-09 2.692196e-08 10498.114 0.0015 46000 890 9.0960584e-09 2.6788158e-08 10498.114 0.0015 47000 890 9.0931038e-09 2.6785955e-08 10498.114 0.0015 48000 890 9.0915381e-09 2.6785102e-08 10498.114 0.0015 49000 890 8.3490816e-10 2.0441102e-08 10498.114 0.0015 50000 890 5.7112432e-09 2.069405e-08 10498.114 0.0015 Loop time of 35.3684 on 1 procs for 30000 steps with 890 atoms, finish time Thu Oct 14 02:13:56 2021 Pair time (%) = 22.2632 (62.9465) Neigh time (%) = 0.0008364 (0.00236482) Comm time (%) = 0.0381728 (0.107929) Outpt time (%) = 0.838586 (2.371) Other time (%) = 12.2276 (34.5722) Nlocal: 890 ave 890 max 890 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 4120 ave 4120 max 4120 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 4120 Ave neighs/atom = 4.62921 Neighbor list builds = 1 Dangerous builds = 0 rm -rf test make[1]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_prep -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_auto_install -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build cd debian/build && make -j4 install DESTDIR=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' /usr/bin/cmake -S/build/liggghts-T4i5up/liggghts-3.8.0+repack1 -B/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/CMakeFiles /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/GenerateHeaders.dir/build.make src/CMakeFiles/GenerateHeaders.dir/depend make[3]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/liggghts-T4i5up/liggghts-3.8.0+repack1 /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src/CMakeFiles/GenerateHeaders.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/GenerateHeaders.dir/build.make src/CMakeFiles/GenerateHeaders.dir/build make[3]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src && sh Make.sh style cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src && sh Make.sh models Creating list of contact models completed. make[3]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' [ 0%] Built target GenerateHeaders make -f src/CMakeFiles/libliggghts.dir/build.make src/CMakeFiles/libliggghts.dir/depend make[3]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/liggghts-T4i5up/liggghts-3.8.0+repack1 /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src/CMakeFiles/libliggghts.dir/DependInfo.cmake --color= Scanning dependencies of target libliggghts make[3]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/libliggghts.dir/build.make src/CMakeFiles/libliggghts.dir/build make[3]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' [ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/universe.cpp.o cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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CMakeFiles/libliggghts.dir/verlet.cpp.o CMakeFiles/libliggghts.dir/write_data.cpp.o CMakeFiles/libliggghts.dir/write_dump.cpp.o CMakeFiles/libliggghts.dir/write_restart.cpp.o -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib: /usr/lib/x86_64-linux-gnu/libboost_mpi.so.1.71.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.71.0 -ljpeg /usr/lib/x86_64-linux-gnu/libvtkChartsCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkInfovisCore-6.3.so.6.3.0 -lfreetype -lz /usr/lib/x86_64-linux-gnu/libvtkViewsContext2D-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkViewsCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersHybrid-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingGeneral-6.3.so.6.3.0 -ljpeg -lpng -ltiff /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingAnnotation-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingColor-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingVolume-6.3.so.6.3.0 -lexpat /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOParallelXML-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOMPIParallel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOParallel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersParallel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIONetCDF-6.3.so.6.3.0 -lnetcdf_c++ -lnetcdf /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so -lsz -ldl -lm /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libvtkexoIIc-6.3.so.6.3.0 -ljsoncpp /usr/lib/x86_64-linux-gnu/libvtkParallelMPI-6.3.so.6.3.0 -lmpi -lmpi_cxx -lmpi -lmpi_cxx /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkftgl-6.3.so.6.3.0 -lfreetype /usr/lib/x86_64-linux-gnu/libvtkImagingHybrid-6.3.so.6.3.0 -lGL -lGLU -lSM -lICE -lX11 -lXext -lXt /usr/lib/x86_64-linux-gnu/libvtkIOImage-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkDICOMParser-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkmetaio-6.3.so.6.3.0 -lz /usr/lib/x86_64-linux-gnu/libvtkIOXML-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOGeometry-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOXMLParser-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonColor-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersExtraction-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersStatistics-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingFourier-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkalglib-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeometry-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersModeling-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonComputationalGeometry-6.3.so.6.3.0 -lnetcdf_c++ -lnetcdf /usr/lib/x86_64-linux-gnu/libvtkParallelCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOLegacy-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonSystem-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtksys-6.3.so.6.3.0 -ldl cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/cmake -E cmake_symlink_library libliggghts.so.3.8.0 libliggghts.so.3 libliggghts.so make[3]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' [ 99%] Built target libliggghts make -f src/CMakeFiles/liggghts.dir/build.make src/CMakeFiles/liggghts.dir/depend make[3]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/liggghts-T4i5up/liggghts-3.8.0+repack1 /build/liggghts-T4i5up/liggghts-3.8.0+repack1/src /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src/CMakeFiles/liggghts.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/liggghts.dir/build.make src/CMakeFiles/liggghts.dir/build make[3]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' [100%] Linking CXX executable liggghts cd /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/liggghts.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/liggghts-T4i5up/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/liggghts.dir/main.cpp.o -o liggghts -Wl,-rpath,/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/src:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/x86_64-linux-gnu/openmpi/lib: libliggghts.so.3.8.0 /usr/lib/x86_64-linux-gnu/libboost_mpi.so.1.71.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.71.0 -ljpeg /usr/lib/x86_64-linux-gnu/libvtkChartsCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkInfovisCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkViewsContext2D-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkViewsCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersHybrid-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingGeneral-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-6.3.so.6.3.0 -lpng -ltiff /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingAnnotation-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkftgl-6.3.so.6.3.0 -lfreetype /usr/lib/x86_64-linux-gnu/libvtkImagingColor-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingVolume-6.3.so.6.3.0 -lexpat /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingHybrid-6.3.so.6.3.0 -lGL -lGLU -lSM -lICE -lX11 -lXext -lXt /usr/lib/x86_64-linux-gnu/libvtkIOParallelXML-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOMPIParallel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOParallel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkDICOMParser-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkmetaio-6.3.so.6.3.0 -lz /usr/lib/x86_64-linux-gnu/libvtkIOXML-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOGeometry-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOXMLParser-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersParallel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonColor-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersExtraction-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersStatistics-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingFourier-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkImagingCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkalglib-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeometry-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersModeling-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonComputationalGeometry-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIONetCDF-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so -lsz -ldl -lm /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libvtkexoIIc-6.3.so.6.3.0 -lnetcdf_c++ -lnetcdf -ljsoncpp /usr/lib/x86_64-linux-gnu/libvtkParallelMPI-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkParallelCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOLegacy-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkIOCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonSystem-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-6.3.so.6.3.0 /usr/lib/x86_64-linux-gnu/libvtksys-6.3.so.6.3.0 -ldl -lmpi -lmpi_cxx -lmpi -lmpi_cxx make[3]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' [100%] Built target liggghts make[2]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' /usr/bin/cmake -E cmake_progress_start /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/lib/x86_64-linux-gnu/libliggghts.so.3.8.0 -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/lib/x86_64-linux-gnu/libliggghts.so.3 -- Set runtime path of "/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/lib/x86_64-linux-gnu/libliggghts.so.3.8.0" to "" -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/lib/x86_64-linux-gnu/libliggghts.so -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/bin/liggghts -- Set runtime path of "/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/bin/liggghts" to "" -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/abstract_mesh.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/accelerator_cuda.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/accelerator_omp.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/angle.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/angle_hybrid.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/associative_pointer_array.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/associative_pointer_array_I.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/atom.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/atom_masks.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/atom_vec.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/atom_vec_atomic.h -- Installing: 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/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/sph_kernel_spiky2D.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/sph_kernel_wendland.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/sph_kernel_wendland2D.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/sph_kernels.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/string_liggghts.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/suffix.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/superquadric.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/surface_mesh.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/surface_mesh_I.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/surface_mesh_feature_remove.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/surface_mesh_feature_remove_I.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/surface_model_base.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/surface_model_default.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/surface_model_multicontact.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/surface_model_superquadric.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tangential_model_base.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tangential_model_history.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tangential_model_luding_tn.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tangential_model_no_history.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tet_mesh.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tet_mesh_I.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/thermo.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/timer.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tracking_mesh.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tracking_mesh_I.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_line.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_mesh.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_mesh_I.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_mesh_I_superquadric.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_mesh_deform.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_mesh_planar.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/tri_mesh_planar_I.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/universe.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/update.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/utils.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/variable.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/vector_container.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/vector_liggghts.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/velocity.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/verlet.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/version.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/volume_mesh.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/volume_mesh_I.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/write_data.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/write_dump.h -- Installing: /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/tmp/usr/include/liggghts/write_restart.h make[1]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/build' dh_install -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_installdocs -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_installchangelogs -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build debian/rules override_dh_installexamples make[1]: Entering directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1' dh_installexamples find /build/liggghts-T4i5up/liggghts-3.8.0+repack1/debian/ -name ".gitignore" | xargs rm -f make[1]: Leaving directory '/build/liggghts-T4i5up/liggghts-3.8.0+repack1' dh_installman -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_installinit -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_installsystemduser -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_perl -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_link -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_strip_nondeterminism -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_compress -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_fixperms -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_missing -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_dwz -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_strip -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_makeshlibs -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_shlibdeps -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_installdeb -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_gencontrol -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dpkg-gencontrol: warning: Depends field of package libliggghts-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dh_builddeb -a -O--buildsystem=cmake -O--builddirectory=/build/liggghts-T4i5up/liggghts-3.8.0\+repack1/debian/build dpkg-deb: building package 'liggghts-dbgsym' in '../liggghts-dbgsym_3.8.0+repack1-7_amd64.deb'. dpkg-deb: building package 'libliggghts3-dbgsym' in '../libliggghts3-dbgsym_3.8.0+repack1-7_amd64.deb'. dpkg-deb: building package 'libliggghts-dev' in '../libliggghts-dev_3.8.0+repack1-7_amd64.deb'. dpkg-deb: building package 'libliggghts3' in '../libliggghts3_3.8.0+repack1-7_amd64.deb'. dpkg-deb: building package 'liggghts' in '../liggghts_3.8.0+repack1-7_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../liggghts_3.8.0+repack1-7_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/liggghts-T4i5up /tmp/liggghts-3.8.0+repack1-7ao1lrkgn I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.z7a5Jt1xEO... I: success in 2945.5156 seconds md5: libliggghts-dev_3.8.0+repack1-7_amd64.deb: OK md5: Value of 'md5' differs for libliggghts3-dbgsym_3.8.0+repack1-7_amd64.deb md5: Size differs for libliggghts3-dbgsym_3.8.0+repack1-7_amd64.deb md5: Value of 'md5' differs for libliggghts3_3.8.0+repack1-7_amd64.deb md5: Size differs for libliggghts3_3.8.0+repack1-7_amd64.deb md5: liggghts-dbgsym_3.8.0+repack1-7_amd64.deb: OK md5: liggghts_3.8.0+repack1-7_amd64.deb: OK sha1: libliggghts-dev_3.8.0+repack1-7_amd64.deb: OK sha1: Value of 'sha1' differs for libliggghts3-dbgsym_3.8.0+repack1-7_amd64.deb sha1: Size differs for libliggghts3-dbgsym_3.8.0+repack1-7_amd64.deb sha1: Value of 'sha1' differs for libliggghts3_3.8.0+repack1-7_amd64.deb sha1: Size differs for libliggghts3_3.8.0+repack1-7_amd64.deb sha1: liggghts-dbgsym_3.8.0+repack1-7_amd64.deb: OK sha1: liggghts_3.8.0+repack1-7_amd64.deb: OK sha256: libliggghts-dev_3.8.0+repack1-7_amd64.deb: OK sha256: Value of 'sha256' differs for libliggghts3-dbgsym_3.8.0+repack1-7_amd64.deb sha256: Size differs for libliggghts3-dbgsym_3.8.0+repack1-7_amd64.deb sha256: Value of 'sha256' differs for libliggghts3_3.8.0+repack1-7_amd64.deb sha256: Size differs for libliggghts3_3.8.0+repack1-7_amd64.deb sha256: liggghts-dbgsym_3.8.0+repack1-7_amd64.deb: OK sha256: liggghts_3.8.0+repack1-7_amd64.deb: OK Checksums: FAIL Cannot generate diffoscope for libliggghts3-dbgsym_3.8.0+repack1-7_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/7c93b89edb8e8c251e7e99474896490dc33ccbb82c9223d800f49154a828c967/download diffoscope run passed