--- /tmp/last-align-1179-1+b13cwiirun/debian/last-align_1179-1+b1_amd64.deb +++ last-align_1179-1+b1_amd64.deb ├── file list │ @@ -1,3 +1,3 @@ │ -rw-r--r-- 0 0 0 4 2021-03-11 23:21:54.000000 debian-binary │ --rw-r--r-- 0 0 0 4528 2021-03-11 23:21:54.000000 control.tar.xz │ --rw-r--r-- 0 0 0 1865624 2021-03-11 23:21:54.000000 data.tar.xz │ +-rw-r--r-- 0 0 0 4524 2021-03-11 23:21:54.000000 control.tar.xz │ +-rw-r--r-- 0 0 0 1864768 2021-03-11 23:21:54.000000 data.tar.xz ├── control.tar.xz │ ├── control.tar │ │ ├── ./md5sums │ │ │ ├── ./md5sums │ │ │ │┄ Files differ ├── data.tar.xz │ ├── data.tar │ │ ├── file list │ │ │ @@ -1,20 +1,20 @@ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2021-03-11 23:21:54.000000 ./ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2021-03-11 23:21:54.000000 ./usr/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2021-03-11 23:21:54.000000 ./usr/bin/ │ │ │ -rwxr-xr-x 0 root (0) root (0) 518 2018-09-05 11:49:32.000000 ./usr/bin/fastq-interleave │ │ │ --rwxr-xr-x 0 root (0) root (0) 48356 2021-03-11 23:21:53.000000 ./usr/bin/last-dotplot │ │ │ --rwxr-xr-x 0 root (0) root (0) 5068 2021-03-11 23:21:53.000000 ./usr/bin/last-map-probs │ │ │ --rwxr-xr-x 0 root (0) root (0) 5549 2021-03-11 23:21:53.000000 ./usr/bin/last-postmask │ │ │ --rwxr-xr-x 0 root (0) root (0) 37772 2021-03-11 23:21:53.000000 ./usr/bin/last-train │ │ │ --rwxr-xr-x 0 root (0) root (0) 33237 2021-03-11 23:21:53.000000 ./usr/bin/maf-convert │ │ │ --rwxr-xr-x 0 root (0) root (0) 4405 2021-03-11 23:21:53.000000 ./usr/bin/maf-cut │ │ │ --rwxr-xr-x 0 root (0) root (0) 9216 2021-03-11 23:21:53.000000 ./usr/bin/maf-join │ │ │ +-rwxr-xr-x 0 root (0) root (0) 48356 2021-03-11 23:21:54.000000 ./usr/bin/last-dotplot │ │ │ +-rwxr-xr-x 0 root (0) root (0) 5068 2021-03-11 23:21:54.000000 ./usr/bin/last-map-probs │ │ │ +-rwxr-xr-x 0 root (0) root (0) 5549 2021-03-11 23:21:54.000000 ./usr/bin/last-postmask │ │ │ +-rwxr-xr-x 0 root (0) root (0) 37772 2021-03-11 23:21:54.000000 ./usr/bin/last-train │ │ │ +-rwxr-xr-x 0 root (0) root (0) 33237 2021-03-11 23:21:54.000000 ./usr/bin/maf-convert │ │ │ +-rwxr-xr-x 0 root (0) root (0) 4405 2021-03-11 23:21:54.000000 ./usr/bin/maf-cut │ │ │ +-rwxr-xr-x 0 root (0) root (0) 9216 2021-03-11 23:21:54.000000 ./usr/bin/maf-join │ │ │ -rwxr-xr-x 0 root (0) root (0) 2027 2014-10-07 11:04:05.000000 ./usr/bin/maf-sort │ │ │ --rwxr-xr-x 0 root (0) root (0) 4947 2021-03-11 23:21:53.000000 ./usr/bin/maf-swap │ │ │ +-rwxr-xr-x 0 root (0) root (0) 4947 2021-03-11 23:21:54.000000 ./usr/bin/maf-swap │ │ │ -rwxr-xr-x 0 root (0) root (0) 234 2013-11-11 01:08:35.000000 ./usr/bin/parallel-fasta │ │ │ -rwxr-xr-x 0 root (0) root (0) 295 2014-12-10 04:37:33.000000 ./usr/bin/parallel-fastq │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2021-03-11 23:21:54.000000 ./usr/lib/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2021-03-11 23:21:54.000000 ./usr/lib/last-align/ │ │ │ -rwxr-xr-x 0 root (0) root (0) 14600 2021-03-11 23:21:54.000000 ./usr/lib/last-align/last-merge-batches-avx │ │ │ -rwxr-xr-x 0 root (0) root (0) 14600 2021-03-11 23:21:54.000000 ./usr/lib/last-align/last-merge-batches-avx2 │ │ │ -rwxr-xr-x 0 root (0) root (0) 14600 2021-03-11 23:21:54.000000 ./usr/lib/last-align/last-merge-batches-sse2 │ │ │ @@ -139,22 +139,22 @@ │ │ │ -rw-r--r-- 0 root (0) root (0) 291 2020-09-25 20:41:16.000000 ./usr/share/doc-base/last-align-scripts │ │ │ -rw-r--r-- 0 root (0) root (0) 295 2020-09-25 20:41:16.000000 ./usr/share/doc-base/last-align-seeds │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2021-03-11 23:21:54.000000 ./usr/share/man/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2021-03-11 23:21:54.000000 ./usr/share/man/man1/ │ │ │ -rw-r--r-- 0 root (0) root (0) 340 2021-03-11 23:21:54.000000 ./usr/share/man/man1/fastq-interleave.1.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 1286 2021-03-11 23:21:54.000000 ./usr/share/man/man1/last-dotplot.1.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 429 2021-03-11 23:21:54.000000 ./usr/share/man/man1/last-map-probs.1.gz │ │ │ --rw-r--r-- 0 root (0) root (0) 325 2021-03-11 23:21:54.000000 ./usr/share/man/man1/last-merge-batches.1.gz │ │ │ +-rw-r--r-- 0 root (0) root (0) 324 2021-03-11 23:21:54.000000 ./usr/share/man/man1/last-merge-batches.1.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 637 2021-03-11 23:21:54.000000 ./usr/share/man/man1/last-pair-probs.1.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 321 2021-03-11 23:21:54.000000 ./usr/share/man/man1/last-postmask.1.gz │ │ │ --rw-r--r-- 0 root (0) root (0) 757 2021-03-11 23:21:54.000000 ./usr/share/man/man1/last-split.1.gz │ │ │ --rw-r--r-- 0 root (0) root (0) 759 2021-03-11 23:21:54.000000 ./usr/share/man/man1/last-split8.1.gz │ │ │ +-rw-r--r-- 0 root (0) root (0) 756 2021-03-11 23:21:54.000000 ./usr/share/man/man1/last-split.1.gz │ │ │ +-rw-r--r-- 0 root (0) root (0) 758 2021-03-11 23:21:54.000000 ./usr/share/man/man1/last-split8.1.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 1181 2021-03-11 23:21:54.000000 ./usr/share/man/man1/last-train.1.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 1715 2021-03-11 23:21:54.000000 ./usr/share/man/man1/lastal.1.gz │ │ │ --rw-r--r-- 0 root (0) root (0) 1718 2021-03-11 23:21:54.000000 ./usr/share/man/man1/lastal8.1.gz │ │ │ +-rw-r--r-- 0 root (0) root (0) 1717 2021-03-11 23:21:54.000000 ./usr/share/man/man1/lastal8.1.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 795 2021-03-11 23:21:54.000000 ./usr/share/man/man1/lastdb.1.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 639 2021-03-11 23:21:54.000000 ./usr/share/man/man1/maf-convert.1.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 275 2021-03-11 23:21:54.000000 ./usr/share/man/man1/maf-join.1.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 307 2021-03-11 23:21:54.000000 ./usr/share/man/man1/maf-sort.1.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 331 2021-03-11 23:21:54.000000 ./usr/share/man/man1/maf-swap.1.gz │ │ │ lrwxrwxrwx 0 root (0) root (0) 0 2021-03-11 23:21:54.000000 ./usr/bin/last-merge-batches -> ../lib/last-align/simd-dispatch │ │ │ lrwxrwxrwx 0 root (0) root (0) 0 2021-03-11 23:21:54.000000 ./usr/bin/last-pair-probs -> ../lib/last-align/simd-dispatch │ │ ├── ./usr/share/man/man1/last-merge-batches.1.gz │ │ │ ├── last-merge-batches.1 │ │ │ │ @@ -1,13 +1,13 @@ │ │ │ │ .\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.48.2. │ │ │ │ .TH LAST-MERGE-BATCHES "1" "March 2021" "last-merge-batches 1179" "User Commands" │ │ │ │ .SH NAME │ │ │ │ last-merge-batches \- Read files of lastal output, merge corresponding batches, and write them │ │ │ │ .SH SYNOPSIS │ │ │ │ -.B last-merge-batches-avx2 │ │ │ │ +.B last-merge-batches-avx │ │ │ │ \fI\,files\/\fR │ │ │ │ .SH DESCRIPTION │ │ │ │ Read files of lastal output, merge corresponding batches, and write them. │ │ │ │ .SH OPTIONS │ │ │ │ .TP │ │ │ │ \fB\-h\fR, \fB\-\-help\fR │ │ │ │ show this help message and exit │ │ ├── ./usr/share/man/man1/last-split.1.gz │ │ │ ├── last-split.1 │ │ │ │ @@ -1,13 +1,13 @@ │ │ │ │ .\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.48.2. │ │ │ │ .TH LAST-SPLIT "1" "March 2021" "last-split 1179" "User Commands" │ │ │ │ .SH NAME │ │ │ │ last-split \- Estimates "split" or "spliced" alignments. │ │ │ │ .SH SYNOPSIS │ │ │ │ -.B last-split-avx2 │ │ │ │ +.B last-split-avx │ │ │ │ [\fI\,options\/\fR] \fI\,LAST-alignments.maf\/\fR │ │ │ │ .SH DESCRIPTION │ │ │ │ Read alignments of query sequences to a genome, and estimate the genomic │ │ │ │ source of each part of each query, allowing different parts of one query to │ │ │ │ come from different parts of the genome. │ │ │ │ .SH OPTIONS │ │ │ │ .TP │ │ ├── ./usr/share/man/man1/last-split8.1.gz │ │ │ ├── last-split8.1 │ │ │ │ @@ -1,13 +1,13 @@ │ │ │ │ .\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.48.2. │ │ │ │ .TH LAST-SPLIT8 "1" "March 2021" "last-split8 1179" "User Commands" │ │ │ │ .SH NAME │ │ │ │ last-split8 \- Estimates "split" or "spliced" alignments. │ │ │ │ .SH SYNOPSIS │ │ │ │ -.B last-split8-avx2 │ │ │ │ +.B last-split8-avx │ │ │ │ [\fI\,options\/\fR] \fI\,LAST-alignments.maf\/\fR │ │ │ │ .SH DESCRIPTION │ │ │ │ Read alignments of query sequences to a genome, and estimate the genomic │ │ │ │ source of each part of each query, allowing different parts of one query to │ │ │ │ come from different parts of the genome. │ │ │ │ .SH OPTIONS │ │ │ │ .TP │ │ ├── ./usr/share/man/man1/lastal.1.gz │ │ │ ├── lastal.1 │ │ │ │ @@ -1,13 +1,13 @@ │ │ │ │ .\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.48.2. │ │ │ │ .TH LASTAL "1" "March 2021" "lastal 1179" "User Commands" │ │ │ │ .SH NAME │ │ │ │ lastal \- genome-scale comparison of biological sequences │ │ │ │ .SH SYNOPSIS │ │ │ │ -.B lastal-avx2 │ │ │ │ +.B lastal-avx │ │ │ │ [\fI\,options\/\fR] \fI\,lastdb-name fasta-sequence-file(s)\/\fR │ │ │ │ .SH DESCRIPTION │ │ │ │ Find and align similar sequences. │ │ │ │ .PP │ │ │ │ Cosmetic options: │ │ │ │ \fB\-h\fR, \fB\-\-help\fR: show all options and their default settings, and exit │ │ │ │ \fB\-V\fR, \fB\-\-version\fR: show version information, and exit │ │ ├── ./usr/share/man/man1/lastal8.1.gz │ │ │ ├── lastal8.1 │ │ │ │ @@ -1,13 +1,13 @@ │ │ │ │ .\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.48.2. │ │ │ │ .TH LASTAL8 "1" "March 2021" "lastal8 1179" "User Commands" │ │ │ │ .SH NAME │ │ │ │ lastal8 \- genome-scale comparison of biological sequences │ │ │ │ .SH SYNOPSIS │ │ │ │ -.B lastal8-avx2 │ │ │ │ +.B lastal8-avx │ │ │ │ [\fI\,options\/\fR] \fI\,lastdb-name fasta-sequence-file(s)\/\fR │ │ │ │ .SH DESCRIPTION │ │ │ │ Find and align similar sequences. │ │ │ │ .PP │ │ │ │ Cosmetic options: │ │ │ │ \fB\-h\fR, \fB\-\-help\fR: show all options and their default settings, and exit │ │ │ │ \fB\-V\fR, \fB\-\-version\fR: show version information, and exit