Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/k/kma/kma_1.4.2-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/kma-1.4.2-1edqlfmx1/kma_1.4.2-1_amd64.buildinfo Get source package info: kma=1.4.2-1 Source URL: http://snapshot.notset.fr/mr/package/kma/1.4.2-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6+b1 binutils=2.38-4 binutils-common=2.38-4 binutils-x86-64-linux-gnu=2.38-4 bsdextrautils=2.38-4 bsdutils=1:2.38-4 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.3.0-3 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.7.1 debianutils=5.7-0.2 dh-autoreconf=20 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.8 dpkg-dev=1.21.8 dwz=0.14-1 file=1:5.41-4 findutils=4.9.0-3 g++=4:11.2.0-2 g++-11=11.3.0-3 gcc=4:11.2.0-2 gcc-11=11.3.0-3 gcc-11-base=11.3.0-3 gcc-12-base=12.1.0-2 gettext=0.21-6 gettext-base=0.21-6 grep=3.7-1 groff-base=1.22.4-8 gzip=1.12-1 hostname=3.23 init-system-helpers=1.63 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.3.0-3 libatomic1=12.1.0-2 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libbinutils=2.38-4 libblkid1=2.38-4 libbz2-1.0=1.0.8-5 libc-bin=2.33-7 libc-dev-bin=2.33-7 libc6=2.33-7 libc6-dev=2.33-7 libcap-ng0=0.7.9-2.2+b2 libcap2=1:2.44-1 libcc1-0=12.1.0-2 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-4 libctf0=2.38-4 libdb5.3=5.3.28+dfsg1-0.9 libdebconfclient0=0.262 libdebhelper-perl=13.7.1 libdpkg-perl=1.21.8 libelf1=0.187-1 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.3.0-3 libgcc-s1=12.1.0-2 libgcrypt20=1.10.1-2 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgmp10=2:6.2.1+dfsg-3 libgomp1=12.1.0-2 libgpg-error0=1.45-2 libgssapi-krb5-2=1.19.2-2+b2 libicu71=71.1-3 libisl23=0.24-2 libitm1=12.1.0-2 libk5crypto3=1.19.2-2+b2 libkeyutils1=1.6.1-3 libkrb5-3=1.19.2-2+b2 libkrb5support0=1.19.2-2+b2 liblsan0=12.1.0-2 liblz4-1=1.9.3-2 liblzma5=5.2.5-2.1 libmagic-mgc=1:5.41-4 libmagic1=1:5.41-4 libmount1=2.38-4 libmpc3=1.2.1-2 libmpfr6=4.1.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-13 libpam-modules-bin=1.4.0-13 libpam-runtime=1.4.0-13 libpam0g=1.4.0-13 libpcre2-8-0=10.40-1 libpcre3=2:8.39-14 libperl5.34=5.34.0-4 libpipeline1=1.5.6-1 libquadmath0=12.1.0-2 libseccomp2=2.5.4-1 libselinux1=3.3-1+b2 libsigsegv2=2.14-1 libsmartcols1=2.38-4 libssl3=3.0.3-5 libstdc++-11-dev=11.3.0-3 libstdc++6=12.1.0-2 libsub-override-perl=0.09-2 libsystemd0=251-2 libtinfo6=6.3+20220423-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-4 libtsan0=11.3.0-3 libubsan1=12.1.0-2 libuchardet0=0.0.7-1 libudev1=251-2 libunistring2=1.0-1 libuuid1=2.38-4 libxml2=2.9.14+dfsg-1 libzstd1=1.5.2+dfsg-1 linux-libc-dev=5.17.6-1+b1 login=1:4.11.1+dfsg1-2 lsb-base=11.2 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3+b1 ncurses-base=6.3+20220423-2 ncurses-bin=6.3+20220423-2 patch=2.7.6-7 perl=5.34.0-4 perl-base=5.34.0-4 perl-modules-5.34=5.34.0-4 po-debconf=1.0.21+nmu1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.03-1 tar=1.34+dfsg-1 util-linux=2.38-4 util-linux-extra=2.38-4 xz-utils=5.2.5-2.1 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220530T032352Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220530T032352Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220525T212247Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d kma=1.4.2-1 && mkdir -p /build/kma-eBRnDz && dpkg-source --no-check -x /*.dsc /build/kma-eBRnDz/kma-1.4.2 && chown -R builduser:builduser /build/kma-eBRnDz" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kma-eBRnDz/kma-1.4.2 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1653726819" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/kma-eBRnDz /tmp/kma-1.4.2-1edqlfmx1 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220525T212247Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.RToACX6DWY as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.RToACX6DWY Reading package lists... Building dependency tree... util-linux is already the newest version (2.38-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 401 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220525T212247Z unstable/main amd64 libfakeroot amd64 1.29-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220525T212247Z unstable/main amd64 fakeroot amd64 1.29-1 [87.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (1044 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4629 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.29-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.29-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.29-1_amd64.deb ... Unpacking fakeroot (1.29-1) ... Setting up libfakeroot:amd64 (1.29-1) ... Setting up fakeroot (1.29-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220530T032352Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220530T032352Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220525T212247Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.RToACX6DWY Get:1 http://snapshot.notset.fr/archive/debian/20220530T032352Z bookworm InRelease [130 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220525T212247Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20220530T032352Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220530T032352Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220530T032352Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220530T032352Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220530T032352Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220530T032352Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20220530T032352Z bookworm/main Sources [12.0 MB] Get:4 http://snapshot.notset.fr/archive/debian/20220530T032352Z bookworm/main amd64 Packages [11.5 MB] Fetched 23.6 MB in 20s (1173 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.RToACX6DWY I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d kma=1.4.2-1 && mkdir -p /build/kma-eBRnDz && dpkg-source --no-check -x /*.dsc /build/kma-eBRnDz/kma-1.4.2 && chown -R builduser:builduser /build/kma-eBRnDz"' exec /tmp/mmdebstrap.RToACX6DWY Reading package lists... NOTICE: 'kma' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kma.git Please use: git clone https://salsa.debian.org/med-team/kma.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 696 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220530T032352Z bookworm/main kma 1.4.2-1 (dsc) [2097 B] Get:2 http://snapshot.notset.fr/archive/debian/20220530T032352Z bookworm/main kma 1.4.2-1 (tar) [687 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220530T032352Z bookworm/main kma 1.4.2-1 (diff) [6324 B] Fetched 696 kB in 1s (1204 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'kma_1.4.2-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting kma in /build/kma-eBRnDz/kma-1.4.2 dpkg-source: info: unpacking kma_1.4.2.orig.tar.gz dpkg-source: info: unpacking kma_1.4.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying blhc.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kma-eBRnDz/kma-1.4.2 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1653726819" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.RToACX6DWY dpkg-buildpackage: info: source package kma dpkg-buildpackage: info: source version 1.4.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j10 clean make[1]: Entering directory '/build/kma-eBRnDz/kma-1.4.2' rm -f align.o alnfrags.o ankers.o assembly.o chain.o compdna.o compkmers.o compress.o conclave.o db.o decon.o dist.o ef.o filebuff.o frags.o hashmap.o hashmapcci.o hashmapkma.o hashmapkmers.o hashtable.o index.o kma.o kmapipe.o kmeranker.o kmers.o kmmap.o loadupdate.o makeindex.o matrix.o mt1.o nw.o pherror.o printconsensus.o qseqs.o qualcheck.o runinput.o runkma.o sam.o savekmers.o seq2fasta.o seqmenttree.o seqparse.o shm.o sparse.o spltdb.o stdnuc.o stdstat.o trim.o tmp.o tsv.o update.o updateindex.o updatescores.o valueshash.o vcf.o xml.o kma kma_index kma_shm kma_update libkma.a make[1]: Leaving directory '/build/kma-eBRnDz/kma-1.4.2' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/kma-eBRnDz/kma-1.4.2' cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align.o align.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alnfrags.o alnfrags.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ankers.o ankers.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o assembly.o assembly.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chain.o chain.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compdna.o compdna.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compkmers.o compkmers.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compress.o compress.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o conclave.o conclave.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o db.o db.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o decon.o decon.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dist.o dist.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ef.o ef.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o filebuff.o filebuff.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o frags.o frags.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmap.o hashmap.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmapcci.o hashmapcci.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmapkma.o hashmapkma.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmapkmers.o hashmapkmers.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashtable.o hashtable.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o index.o index.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kma.o kma.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmapipe.o kmapipe.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmeranker.o kmeranker.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmers.o kmers.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmmap.o kmmap.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loadupdate.o loadupdate.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makeindex.o makeindex.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix.o matrix.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mt1.o mt1.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o nw.o nw.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pherror.o pherror.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o printconsensus.o printconsensus.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qseqs.o qseqs.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qualcheck.o qualcheck.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o runinput.o runinput.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o runkma.o runkma.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o savekmers.o savekmers.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seq2fasta.o seq2fasta.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqmenttree.o seqmenttree.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqparse.o seqparse.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o shm.o shm.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sparse.o sparse.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o spltdb.o spltdb.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stdnuc.o stdnuc.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stdstat.o stdstat.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trim.o trim.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tmp.o tmp.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tsv.o tsv.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o update.o update.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o updateindex.o updateindex.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o updatescores.o updatescores.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o valueshash.o valueshash.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xml.o xml.c ar -csr libkma.a align.o alnfrags.o ankers.o assembly.o chain.o compdna.o compkmers.o compress.o conclave.o db.o decon.o dist.o ef.o filebuff.o frags.o hashmap.o hashmapcci.o hashmapkma.o hashmapkmers.o hashtable.o index.o kma.o kmapipe.o kmeranker.o kmers.o kmmap.o loadupdate.o makeindex.o matrix.o mt1.o nw.o pherror.o printconsensus.o qseqs.o qualcheck.o runinput.o runkma.o sam.o savekmers.o seq2fasta.o seqmenttree.o seqparse.o shm.o sparse.o spltdb.o stdnuc.o stdstat.o trim.o tmp.o tsv.o update.o updateindex.o updatescores.o valueshash.o vcf.o xml.o cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -o kma main.c libkma.a -lm -lpthread -lz -Wl,-z,relro -Wl,-z,now cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -o kma_index kma_index.c libkma.a -lm -lz -Wl,-z,relro -Wl,-z,now cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -o kma_shm kma_shm.c libkma.a -Wl,-z,relro -Wl,-z,now cc -g -O2 -ffile-prefix-map=/build/kma-eBRnDz/kma-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -o kma_update kma_update.c libkma.a -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/kma-eBRnDz/kma-1.4.2' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/kma/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dwz: debian/kma/usr/bin/kma: DWARF compression not beneficial - old size 422932 new size 424998 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'kma' in '../kma_1.4.2-1_amd64.deb'. dpkg-deb: building package 'kma-dbgsym' in '../kma-dbgsym_1.4.2-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../kma_1.4.2-1_amd64.buildinfo dpkg-genchanges --build=any -O../kma_1.4.2-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/kma-eBRnDz /tmp/kma-1.4.2-1edqlfmx1 I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.RToACX6DWY... I: success in 276.9140 seconds md5: kma-dbgsym_1.4.2-1_amd64.deb: OK md5: kma_1.4.2-1_amd64.deb: OK sha1: kma-dbgsym_1.4.2-1_amd64.deb: OK sha1: kma_1.4.2-1_amd64.deb: OK sha256: kma-dbgsym_1.4.2-1_amd64.deb: OK sha256: kma_1.4.2-1_amd64.deb: OK Checksums: OK