Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/k/kma/kma_1.3.23-2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/kma-1.3.23-2_6dyolzf/kma_1.3.23-2_amd64.buildinfo Get source package info: kma=1.3.23-2 Source URL: http://snapshot.notset.fr/mr/package/kma/1.3.23-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.4-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.51 bash=5.1-3+b1 binutils=2.37-5 binutils-common=2.37-5 binutils-x86-64-linux-gnu=2.37-5 bsdextrautils=2.37.2-2 bsdutils=1:2.37.2-2 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.3.0-10 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.1 debianutils=5.4-4 dh-autoreconf=20 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.3.0-10 gcc=4:10.2.1-1 gcc-10=10.3.0-10 gcc-10-base=10.3.0-10 gcc-11-base=11.2.0-5 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-5 libatomic1=11.2.0-5 libattr1=1:2.5.1-1 libaudit-common=1:3.0.5-1 libaudit1=1:3.0.5-1 libbinutils=2.37-5 libblkid1=2.37.2-2 libbz2-1.0=1.0.8-4 libc-bin=2.32-2 libc-dev-bin=2.32-2 libc6=2.32-2 libc6-dev=2.32-2 libcap-ng0=0.7.9-2.2+b1 libcc1-0=11.2.0-5 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-5 libctf0=2.37-5 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.1 libdpkg-perl=1.20.9 libelf1=0.185-2 libfile-stripnondeterminism-perl=1.12.0-1 libgcc-10-dev=10.3.0-10 libgcc-s1=11.2.0-5 libgcrypt20=1.9.4-3 libgdbm-compat4=1.21-1 libgdbm6=1.21-1 libgmp10=2:6.2.1+dfsg-2 libgomp1=11.2.0-5 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libicu67=67.1-7 libisl23=0.23-1 libitm1=11.2.0-5 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblsan0=11.2.0-5 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.37.2-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-5 libpipeline1=1.5.3-1 libquadmath0=11.2.0-5 libseccomp2=2.5.2-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.37.2-2 libssl1.1=1.1.1l-1 libstdc++-10-dev=10.3.0-10 libstdc++6=11.2.0-5 libsub-override-perl=0.09-2 libsystemd0=247.9-1 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-5 libubsan1=11.2.0-5 libuchardet0=0.0.7-1 libudev1=247.9-1 libunistring2=0.9.10-6 libuuid1=2.37.2-2 libxml2=2.9.12+dfsg-4 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.46-4 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 patch=2.7.6-7 perl=5.32.1-5 perl-base=5.32.1-5 perl-modules-5.32=5.32.1-5 po-debconf=1.0.21+nmu1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=2.96-7 tar=1.34+dfsg-1 util-linux=2.37.2-2 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211015T213729Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211015T213729Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210914T205414Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d kma=1.3.23-2 && mkdir -p /build/kma-r8WRft && dpkg-source --no-check -x /*.dsc /build/kma-r8WRft/kma-1.3.23 && chown -R builduser:builduser /build/kma-r8WRft" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kma-r8WRft/kma-1.3.23 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1629754978" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/kma-r8WRft /tmp/kma-1.3.23-2_6dyolzf bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20210914T205414Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.XY9o3a0Qis as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.XY9o3a0Qis Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210914T205414Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210914T205414Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1022 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4664 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-2) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211015T213729Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211015T213729Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210914T205414Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.XY9o3a0Qis Get:1 http://snapshot.notset.fr/archive/debian/20211015T213729Z bookworm InRelease [128 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210914T205414Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211015T213729Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211015T213729Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211015T213729Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211015T213729Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211015T213729Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211015T213729Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211015T213729Z bookworm/main Sources [11.7 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211015T213729Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.0 MB in 20s (1176 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.XY9o3a0Qis I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d kma=1.3.23-2 && mkdir -p /build/kma-r8WRft && dpkg-source --no-check -x /*.dsc /build/kma-r8WRft/kma-1.3.23 && chown -R builduser:builduser /build/kma-r8WRft"' exec /tmp/mmdebstrap.XY9o3a0Qis Reading package lists... NOTICE: 'kma' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kma.git Please use: git clone https://salsa.debian.org/med-team/kma.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 657 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211015T213729Z bookworm/main kma 1.3.23-2 (dsc) [2111 B] Get:2 http://snapshot.notset.fr/archive/debian/20211015T213729Z bookworm/main kma 1.3.23-2 (tar) [649 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211015T213729Z bookworm/main kma 1.3.23-2 (diff) [6216 B] Fetched 657 kB in 1s (989 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'kma_1.3.23-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting kma in /build/kma-r8WRft/kma-1.3.23 dpkg-source: info: unpacking kma_1.3.23.orig.tar.bz2 dpkg-source: info: unpacking kma_1.3.23-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying blhc.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kma-r8WRft/kma-1.3.23 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1629754978" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.XY9o3a0Qis dpkg-buildpackage: info: source package kma dpkg-buildpackage: info: source version 1.3.23-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/build/kma-r8WRft/kma-1.3.23' rm -f align.o alnfrags.o ankers.o assembly.o chain.o compdna.o compkmers.o compress.o db.o decon.o dist.o ef.o filebuff.o frags.o hashmap.o hashmapcci.o hashmapkma.o hashmapkmers.o hashtable.o index.o kma.o kmapipe.o kmeranker.o kmers.o kmmap.o loadupdate.o makeindex.o matrix.o mt1.o nw.o pherror.o printconsensus.o qseqs.o qualcheck.o runinput.o runkma.o sam.o savekmers.o seq2fasta.o seqmenttree.o seqparse.o shm.o sparse.o spltdb.o stdnuc.o stdstat.o tmp.o update.o updateindex.o updatescores.o valueshash.o vcf.o xml.o kma kma_index kma_shm kma_update libkma.a make[1]: Leaving directory '/build/kma-r8WRft/kma-1.3.23' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/kma-r8WRft/kma-1.3.23' cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align.o align.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alnfrags.o alnfrags.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ankers.o ankers.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o assembly.o assembly.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chain.o chain.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compdna.o compdna.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compkmers.o compkmers.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compress.o compress.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o db.o db.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o decon.o decon.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dist.o dist.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ef.o ef.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o filebuff.o filebuff.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o frags.o frags.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmap.o hashmap.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmapcci.o hashmapcci.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmapkma.o hashmapkma.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmapkmers.o hashmapkmers.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashtable.o hashtable.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o index.o index.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kma.o kma.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmapipe.o kmapipe.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmeranker.o kmeranker.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmers.o kmers.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmmap.o kmmap.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loadupdate.o loadupdate.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makeindex.o makeindex.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix.o matrix.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mt1.o mt1.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o nw.o nw.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pherror.o pherror.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o printconsensus.o printconsensus.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qseqs.o qseqs.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qualcheck.o qualcheck.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o runinput.o runinput.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o runkma.o runkma.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o savekmers.o savekmers.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seq2fasta.o seq2fasta.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqmenttree.o seqmenttree.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqparse.o seqparse.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o shm.o shm.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sparse.o sparse.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o spltdb.o spltdb.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stdnuc.o stdnuc.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stdstat.o stdstat.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tmp.o tmp.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o update.o update.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o updateindex.o updateindex.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o updatescores.o updatescores.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o valueshash.o valueshash.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xml.o xml.c ar -csr libkma.a align.o alnfrags.o ankers.o assembly.o chain.o compdna.o compkmers.o compress.o db.o decon.o dist.o ef.o filebuff.o frags.o hashmap.o hashmapcci.o hashmapkma.o hashmapkmers.o hashtable.o index.o kma.o kmapipe.o kmeranker.o kmers.o kmmap.o loadupdate.o makeindex.o matrix.o mt1.o nw.o pherror.o printconsensus.o qseqs.o qualcheck.o runinput.o runkma.o sam.o savekmers.o seq2fasta.o seqmenttree.o seqparse.o shm.o sparse.o spltdb.o stdnuc.o stdstat.o tmp.o update.o updateindex.o updatescores.o valueshash.o vcf.o xml.o cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -o kma main.c libkma.a -lm -lpthread -lz -Wl,-z,relro -Wl,-z,now cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -o kma_index kma_index.c libkma.a -lm -lz -Wl,-z,relro -Wl,-z,now cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -o kma_shm kma_shm.c libkma.a -Wl,-z,relro -Wl,-z,now cc -g -O2 -ffile-prefix-map=/build/kma-r8WRft/kma-1.3.23=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -o kma_update kma_update.c libkma.a -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/kma-r8WRft/kma-1.3.23' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/kma/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'kma' in '../kma_1.3.23-2_amd64.deb'. dpkg-deb: building package 'kma-dbgsym' in '../kma-dbgsym_1.3.23-2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../kma_1.3.23-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/kma-r8WRft /tmp/kma-1.3.23-2_6dyolzf I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.XY9o3a0Qis... I: success in 1396.2942 seconds md5: kma-dbgsym_1.3.23-2_amd64.deb: OK md5: kma_1.3.23-2_amd64.deb: OK sha1: kma-dbgsym_1.3.23-2_amd64.deb: OK sha1: kma_1.3.23-2_amd64.deb: OK sha256: kma-dbgsym_1.3.23-2_amd64.deb: OK sha256: kma_1.3.23-2_amd64.deb: OK Checksums: OK