Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/k/kleborate/kleborate_2.2.0-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/kleborate-2.2.0-1ju9651mi/kleborate_2.2.0-1_amd64.buildinfo Get source package info: kleborate=2.2.0-1 Source URL: http://snapshot.notset.fr/mr/package/kleborate/2.2.0-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.90.20220207-1 binutils-common=2.37.90.20220207-1 binutils-x86-64-linux-gnu=2.37.90.20220207-1 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-16 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 dh-autoreconf=20 dh-python=5.20220119 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fonts-urw-base35=20200910-1 g++=4:11.2.0-2 g++-11=11.2.0-16 gcc=4:11.2.0-2 gcc-11=11.2.0-16 gcc-11-base=11.2.0-16 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 kaptive=2.0.0-1 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-16 libatomic1=11.2.0-16 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37.90.20220207-1 libblas3=3.10.0-2 libblkid1=2.37.3-1+b1 libbrotli1=1.0.9-2+b3 libbsd0=0.11.5-1+b1 libbz2-1.0=1.0.8-5 libc-bin=2.33-5 libc-dev-bin=2.33-5 libc6=2.33-5 libc6-dev=2.33-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcapnp-0.8.0=0.8.0-2 libcc1-0=11.2.0-16 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.37.90.20220207-1 libctf0=2.37.90.20220207-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdeflate0=1.9-1 libdpkg-perl=1.21.1 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.4-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libfreetype6=2.11.1+dfsg-1 libfribidi0=1.0.8-2 libgcc-11-dev=11.2.0-16 libgcc-s1=11.2.0-16 libgcrypt20=1.9.4-5 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgfortran5=11.2.0-16 libglib2.0-0=2.70.3-1 libgmp10=2:6.2.1+dfsg-3 libgomp1=11.2.0-16 libgpg-error0=1.43-3 libgraphite2-3=1.3.14-1 libgsl27=2.7.1+dfsg-3 libgslcblas0=2.7.1+dfsg-3 libgssapi-krb5-2=1.18.3-7 libharfbuzz0b=2.7.4-1 libicu67=67.1-7 libimagequant0=2.17.0-1 libisl23=0.24-2 libitm1=11.2.0-16 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.1.2-1 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-2 liblcms2-2=2.12~rc1-2 liblmdb0=0.9.24-1 liblsan0=11.2.0-16 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmbedcrypto3=2.16.11-0.3 libmbedtls12=2.16.11-0.3 libmbedx509-0=2.16.11-0.3 libmd0=1.0.4-1 libmount1=2.37.3-1+b1 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libmurmurhash2=1.5-3 libncursesw6=6.3-2 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopenjp2-7=2.4.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.34=5.34.0-3 libpipeline1=1.5.5-1 libpng16-16=1.6.37-3 libpython3-stdlib=3.9.8-1 libpython3.10-minimal=3.10.2-1 libpython3.10-stdlib=3.10.2-1 libpython3.9-minimal=3.9.10-1 libpython3.9-stdlib=3.9.10-1 libquadmath0=11.2.0-16 libraqm0=0.7.0-4 libreadline8=8.1.2-1 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.14-1 libsmartcols1=2.37.3-1+b1 libsqlite3-0=3.37.2-2 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-16 libstdc++6=11.2.0-16 libsub-override-perl=0.09-2 libsystemd0=250.3-2 libtiff5=4.3.0-3 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-16 libubsan1=11.2.0-16 libuchardet0=0.0.7-1 libudev1=250.3-2 libunistring2=1.0-1 libuuid1=2.37.3-1+b1 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxml2=2.9.12+dfsg-5+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.16.7-2 login=1:4.11.1+dfsg1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.70+nmu1 make=4.3-4.1 man-db=2.10.1-1 mash=2.3+dfsg-1+b2 mawk=1.3.4.20200120-3+b1 media-types=5.0.0 mime-support=3.66 ncbi-blast+=2.12.0+ds-3 ncbi-data=6.1.20170106+dfsg1-9 ncurses-base=6.3-2 ncurses-bin=6.3-2 patch=2.7.6-7 perl=5.34.0-3 perl-base=5.34.0-3 perl-modules-5.34=5.34.0-3 po-debconf=1.0.21+nmu1 python3=3.9.8-1 python3-biopython=1.79+dfsg-1+b1 python3-distutils=3.9.10-1 python3-lib2to3=3.9.10-1 python3-minimal=3.9.8-1 python3-numpy=1:1.21.5-1 python3-pil=9.0.0-1 python3-pkg-resources=59.6.0-1.2 python3-renderpm=3.6.5-1 python3-reportlab=3.6.5-1 python3-reportlab-accel=3.6.5-1 python3-setuptools=59.6.0-1.2 python3.10=3.10.2-1 python3.10-minimal=3.10.2-1 python3.9=3.9.10-1 python3.9-minimal=3.9.10-1 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 tzdata=2021e-1 util-linux=2.37.3-1+b1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220217T030151Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220217T030151Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220217T084802Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220209T214738Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d kleborate=2.2.0-1 && mkdir -p /build/kleborate-mhqjG5 && dpkg-source --no-check -x /*.dsc /build/kleborate-mhqjG5/kleborate-2.2.0 && chown -R builduser:builduser /build/kleborate-mhqjG5" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kleborate-mhqjG5/kleborate-2.2.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1644584120" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/kleborate-mhqjG5 /tmp/kleborate-2.2.0-1ju9651mi bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220209T214738Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.A7IUipgjHc as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.A7IUipgjHc Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220209T214738Z unstable/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220209T214738Z unstable/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (767 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4697 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220217T030151Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220217T030151Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220217T084802Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220209T214738Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.A7IUipgjHc Get:1 http://snapshot.notset.fr/archive/debian/20220217T030151Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220217T084802Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220209T214738Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220217T030151Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220217T030151Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220217T030151Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220217T030151Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220217T030151Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220217T030151Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220217T030151Z bookworm/main Sources [11.9 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220217T030151Z bookworm/main amd64 Packages [11.3 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220217T084802Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220217T084802Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220217T084802Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220217T084802Z unstable/main amd64 Packages [12.2 MB] Fetched 35.6 MB in 29s (1244 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.A7IUipgjHc I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d kleborate=2.2.0-1 && mkdir -p /build/kleborate-mhqjG5 && dpkg-source --no-check -x /*.dsc /build/kleborate-mhqjG5/kleborate-2.2.0 && chown -R builduser:builduser /build/kleborate-mhqjG5"' exec /tmp/mmdebstrap.A7IUipgjHc Reading package lists... NOTICE: 'kleborate' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kleborate.git Please use: git clone https://salsa.debian.org/med-team/kleborate.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 97.3 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220217T030151Z bookworm/main kleborate 2.2.0-1 (dsc) [2206 B] Get:2 http://snapshot.notset.fr/archive/debian/20220217T030151Z bookworm/main kleborate 2.2.0-1 (tar) [91.3 MB] Get:3 http://snapshot.notset.fr/archive/debian/20220217T030151Z bookworm/main kleborate 2.2.0-1 (diff) [5996 kB] Fetched 97.3 MB in 1min 16s (1289 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'kleborate_2.2.0-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting kleborate in /build/kleborate-mhqjG5/kleborate-2.2.0 dpkg-source: info: unpacking kleborate_2.2.0.orig.tar.gz dpkg-source: info: unpacking kleborate_2.2.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.patch dpkg-source: info: applying use_debian_installed_kaptive.patch dpkg-source: info: applying bigendian.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kleborate-mhqjG5/kleborate-2.2.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1644584120" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.A7IUipgjHc dpkg-buildpackage: info: source package kleborate dpkg-buildpackage: info: source version 2.2.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:237: python3.9 setup.py clean running clean removing '/build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:237: python3.9 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py creating /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/__init__.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/contig_stats.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/help_formatter.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/misc.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/mlstBLAST.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/resBLAST.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/rmpA.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/shv_mutations.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/species.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/truncation.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/version.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/kaptive.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/__main__.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/blastn.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate package init file 'kaptive/__init__.py' not found (or not a regular file) running egg_info creating Kleborate.egg-info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt writing manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' adding license file 'LICENSE' writing manifest file 'Kleborate.egg-info/SOURCES.txt' creating /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/AbST_profiles.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/CARD_AMR_clustered.csv -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/CARD_v3.0.8.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/CbST_profiles.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/Klebsiella_pneumoniae.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/MgrB_and_PmrB.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/OmpK.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/QRDR_120.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/RmST_profiles.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/SmST_profiles.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/YbST_profiles.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/clb_alleles.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/iro_alleles.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/iuc_alleles.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/kpneumoniae.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/rmpA2.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/rmp_alleles.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/species_mash_sketches.msh -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/wzi.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/wzi.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/ybt_alleles.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data creating /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp1.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp10.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp11.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp12.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp13.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp14.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp15.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp16.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp17.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp18.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp19.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp2.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp20.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp21.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp22.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp3.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp4.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp5.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp6.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp7.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp8.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp9.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py package init file 'kaptive/__init__.py' not found (or not a regular file) running egg_info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' adding license file 'LICENSE' writing manifest file 'Kleborate.egg-info/SOURCES.txt' running install_lib creating /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr creating /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib creating /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9 creating /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages creating /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/__init__.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/contig_stats.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/help_formatter.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/misc.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/mlstBLAST.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/resBLAST.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/rmpA.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/shv_mutations.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/species.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/truncation.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/version.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/kaptive.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/__main__.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/blastn.py -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate creating /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/AbST_profiles.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/CARD_AMR_clustered.csv -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/CARD_v3.0.8.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/CbST_profiles.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/Klebsiella_pneumoniae.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/MgrB_and_PmrB.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/OmpK.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/QRDR_120.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/RmST_profiles.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/SmST_profiles.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/YbST_profiles.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/clb_alleles.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/iro_alleles.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/iuc_alleles.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/kpneumoniae.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/rmpA2.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/rmp_alleles.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/species_mash_sketches.msh -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/wzi.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/wzi.txt -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ybt_alleles.fasta -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data creating /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp1.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp10.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp11.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp12.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp13.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp14.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp15.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp16.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp17.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp18.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp19.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp2.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp20.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp21.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp22.gff -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp3.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp4.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp5.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp6.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp7.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp8.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-mhqjG5/kleborate-2.2.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp9.embl -> /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__init__.py to __init__.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/contig_stats.py to contig_stats.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/help_formatter.py to help_formatter.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/misc.py to misc.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/mlstBLAST.py to mlstBLAST.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/resBLAST.py to resBLAST.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/rmpA.py to rmpA.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/shv_mutations.py to shv_mutations.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/species.py to species.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/truncation.py to truncation.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/version.py to version.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/kaptive.py to kaptive.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__main__.py to __main__.cpython-39.pyc byte-compiling /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/blastn.py to blastn.cpython-39.pyc running install_egg_info Copying Kleborate.egg-info to /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/Kleborate-2.2.0.egg-info Skipping SOURCES.txt running install_scripts Installing kleborate script to /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/bin Building BLAST databases with makeblastdb: makeblastdb -dbtype nucl -in /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/CARD_v3.0.8.fasta makeblastdb -dbtype nucl -in /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/clb_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/rmpA2.fasta makeblastdb -dbtype nucl -in /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/iro_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/iuc_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/rmp_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta makeblastdb -dbtype nucl -in /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/wzi.fasta makeblastdb -dbtype nucl -in /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ybt_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/MgrB_and_PmrB.fasta makeblastdb -dbtype nucl -in /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/OmpK.fasta makeblastdb -dbtype nucl -in /build/kleborate-mhqjG5/kleborate-2.2.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/QRDR_120.fasta  _ __ _ ______ ____ ____ _____ _______ ______ | | / /| | | ____| _ \ / __ \| __ \ /\|__ __| ____| | |/ / | | | |__ | |_) | | | | |__) | / \ | | | |__ | < | | | __| | _ <| | | | _ / / /\ \ | | | __| | |\ \ | |___| |____| |_) | |__| | | \ \/ ____ \| | | |____ |_| \_\|_____|______|____/ \____/|_| \_\/ \_\_| |______|  Kleborate is installed and ready to use! Example commands: kleborate --help kleborate -o results.txt -a *.fasta kleborate --resistance -o results.txt -a *.fasta kleborate --all -o results.txt -a *.fasta debian/rules override_dh_install make[1]: Entering directory '/build/kleborate-mhqjG5/kleborate-2.2.0' dh_install # fasta.nin files will be (re)build at package installation time to not contain build path find debian -name "*.fasta.nin" -delete make[1]: Leaving directory '/build/kleborate-mhqjG5/kleborate-2.2.0' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/kleborate-mhqjG5/kleborate-2.2.0' dh_fixperms find debian -name "*.msh" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/kleborate-mhqjG5/kleborate-2.2.0' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'kleborate' in '../kleborate_2.2.0-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../kleborate_2.2.0-1_amd64.buildinfo dpkg-genchanges --build=any -O../kleborate_2.2.0-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/kleborate-mhqjG5 /tmp/kleborate-2.2.0-1ju9651mi I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.A7IUipgjHc... I: success in 536.2252 seconds md5: kleborate_2.2.0-1_amd64.deb: OK sha1: kleborate_2.2.0-1_amd64.deb: OK sha256: kleborate_2.2.0-1_amd64.deb: OK Checksums: OK