Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/k/kleborate/kleborate_2.1.0-2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/kleborate-2.1.0-20_c4vqgq/kleborate_2.1.0-2_amd64.buildinfo Get source package info: kleborate=2.1.0-2 Source URL: http://snapshot.notset.fr/mr/package/kleborate/2.1.0-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.4-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.51 bash=5.1-3+b1 binutils=2.37-5 binutils-common=2.37-5 binutils-x86-64-linux-gnu=2.37-5 bsdextrautils=2.37.2-3 bsdutils=1:2.37.2-2 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.3.0-10 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.1 debianutils=5.5-1 dh-autoreconf=20 dh-python=4.20201102+nmu1 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.3.0-10 gcc=4:10.2.1-1 gcc-10=10.3.0-10 gcc-10-base=10.3.0-10 gcc-11-base=11.2.0-7 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 kaptive=0.7.3-4 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-7 libatomic1=11.2.0-7 libattr1=1:2.5.1-1 libaudit-common=1:3.0.5-1 libaudit1=1:3.0.5-1 libbinutils=2.37-5 libblas3=3.10.0-1 libblkid1=2.37.2-2 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.32-3 libc-dev-bin=2.32-3 libc6=2.32-3 libc6-dev=2.32-3 libcap-ng0=0.7.9-2.2+b1 libcapnp-0.7.0=0.7.0-7 libcc1-0=11.2.0-7 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-5 libctf0=2.37-5 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.1 libdeflate0=1.7-2 libdpkg-perl=1.20.9 libelf1=0.185-2 libexpat1=2.4.1-2+b1 libffi7=3.3-6 libfile-stripnondeterminism-perl=1.12.0-1 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.3.0-10 libgcc-s1=11.2.0-7 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.21-1 libgdbm6=1.21-1 libgfortran5=11.2.0-7 libgmp10=2:6.2.1+dfsg-2 libgomp1=11.2.0-7 libgpg-error0=1.42-3 libgsl25=2.7+dfsg-2 libgslcblas0=2.7+dfsg-2 libgssapi-krb5-2=1.18.3-7 libicu67=67.1-7 libimagequant0=2.12.2-1.1 libisl23=0.23-1 libitm1=11.2.0-7 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.6-4 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-1 liblcms2-2=2.12~rc1-2 liblmdb0=0.9.24-1 liblsan0=11.2.0-7 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmbedcrypto3=2.16.9-0.1 libmbedtls12=2.16.9-0.1 libmbedx509-0=2.16.9-0.1 libmd0=1.0.3-3 libmount1=2.37.2-2 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libmurmurhash2=1.5-3 libncursesw6=6.2+20210905-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-5 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libpython3-stdlib=3.9.2-3 libpython3.9-minimal=3.9.7-2 libpython3.9-stdlib=3.9.7-2 libquadmath0=11.2.0-7 libreadline8=8.1-2 libseccomp2=2.5.2-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.37.2-2 libsqlite3-0=3.36.0-2 libssl1.1=1.1.1l-1 libstdc++-10-dev=10.3.0-10 libstdc++6=11.2.0-7 libsub-override-perl=0.09-2 libsystemd0=247.9-1 libtiff5=4.3.0-2 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-7 libubsan1=11.2.0-7 libuchardet0=0.0.7-1 libudev1=247.9-1 libunistring2=0.9.10-6 libuuid1=2.37.2-2 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxml2=2.9.12+dfsg-5 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.14.6-2 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.70 make=4.3-4.1 man-db=2.9.4-2 mash=2.2.2+dfsg-4 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncbi-blast+=2.11.0+ds-1 ncbi-data=6.1.20170106+dfsg1-9 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 patch=2.7.6-7 perl=5.32.1-5 perl-base=5.32.1-5 perl-modules-5.32=5.32.1-5 po-debconf=1.0.21+nmu1 python3=3.9.2-3 python3-biopython=1.78+dfsg-5 python3-distutils=3.9.7-1 python3-lib2to3=3.9.7-1 python3-minimal=3.9.2-3 python3-numpy=1:1.19.5-1 python3-pil=8.1.2+dfsg-0.3 python3-pkg-resources=52.0.0-4 python3-reportlab=3.5.67-2 python3-reportlab-accel=3.5.67-2 python3-setuptools=52.0.0-4 python3.9=3.9.7-2 python3.9-minimal=3.9.7-2 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=2.96-7 tar=1.34+dfsg-1 tzdata=2021a-1 util-linux=2.37.2-2 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210928T025308Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210928T025308Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211019T151710Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210919T205612Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d kleborate=2.1.0-2 && mkdir -p /build/kleborate-08RyNN && dpkg-source --no-check -x /*.dsc /build/kleborate-08RyNN/kleborate-2.1.0 && chown -R builduser:builduser /build/kleborate-08RyNN" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kleborate-08RyNN/kleborate-2.1.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1632329682" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/kleborate-08RyNN /tmp/kleborate-2.1.0-20_c4vqgq bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20210919T205612Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.z7Inm7Ko4T as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.z7Inm7Ko4T Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210919T205612Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210919T205612Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (813 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4665 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-3) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210928T025308Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210928T025308Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211019T151710Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210919T205612Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.z7Inm7Ko4T Get:1 http://snapshot.notset.fr/archive/debian/20210928T025308Z bookworm InRelease [128 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211019T151710Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210919T205612Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210928T025308Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210928T025308Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210928T025308Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210928T025308Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210928T025308Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210928T025308Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210928T025308Z bookworm/main Sources [11.6 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210928T025308Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211019T151710Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20211019T151710Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20211019T151710Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211019T151710Z unstable/main amd64 Packages [11.9 MB] Fetched 35.1 MB in 30s (1187 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.z7Inm7Ko4T I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d kleborate=2.1.0-2 && mkdir -p /build/kleborate-08RyNN && dpkg-source --no-check -x /*.dsc /build/kleborate-08RyNN/kleborate-2.1.0 && chown -R builduser:builduser /build/kleborate-08RyNN"' exec /tmp/mmdebstrap.z7Inm7Ko4T Reading package lists... NOTICE: 'kleborate' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kleborate.git Please use: git clone https://salsa.debian.org/med-team/kleborate.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 97.3 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210928T025308Z bookworm/main kleborate 2.1.0-2 (dsc) [2206 B] Get:2 http://snapshot.notset.fr/archive/debian/20210928T025308Z bookworm/main kleborate 2.1.0-2 (tar) [91.3 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210928T025308Z bookworm/main kleborate 2.1.0-2 (diff) [5996 kB] Fetched 97.3 MB in 1min 22s (1184 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'kleborate_2.1.0-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting kleborate in /build/kleborate-08RyNN/kleborate-2.1.0 dpkg-source: info: unpacking kleborate_2.1.0.orig.tar.gz dpkg-source: info: unpacking kleborate_2.1.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.patch dpkg-source: info: applying use_debian_installed_kaptive.patch dpkg-source: info: applying bigendian.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kleborate-08RyNN/kleborate-2.1.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1632329682" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.z7Inm7Ko4T dpkg-buildpackage: info: source package kleborate dpkg-buildpackage: info: source version 2.1.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/__init__.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/contig_stats.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/help_formatter.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/misc.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/mlstBLAST.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/resBLAST.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/rmpA.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/shv_mutations.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/species.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/truncation.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/version.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/kaptive.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/__main__.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate copying kleborate/blastn.py -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate package init file 'kaptive/__init__.py' not found (or not a regular file) running egg_info creating Kleborate.egg-info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt writing manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' writing manifest file 'Kleborate.egg-info/SOURCES.txt' creating /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/AbST_profiles.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/CARD_AMR_clustered.csv -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/CARD_v3.0.8.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/CbST_profiles.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/Klebsiella_pneumoniae.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/MgrB_and_PmrB.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/OmpK.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/QRDR_120.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/RmST_profiles.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/SmST_profiles.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/YbST_profiles.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/clb_alleles.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/iro_alleles.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/iuc_alleles.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/kpneumoniae.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/rmpA2.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/rmp_alleles.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/species_mash_sketches.msh -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/wzi.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/wzi.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/ybt_alleles.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data creating /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp1.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp10.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp11.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp12.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp13.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp14.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp15.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp16.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp17.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp18.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp19.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp2.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp20.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp21.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp22.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp3.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp4.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp5.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp6.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp7.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp8.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp9.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp running install running build running build_py package init file 'kaptive/__init__.py' not found (or not a regular file) running egg_info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' writing manifest file 'Kleborate.egg-info/SOURCES.txt' running install_lib creating /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr creating /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib creating /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9 creating /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages creating /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/__init__.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/contig_stats.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/help_formatter.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/misc.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/mlstBLAST.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/resBLAST.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/rmpA.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/shv_mutations.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/species.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/truncation.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/version.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/kaptive.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/__main__.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/blastn.py -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate creating /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/AbST_profiles.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/CARD_AMR_clustered.csv -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/CARD_v3.0.8.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/CbST_profiles.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/Klebsiella_pneumoniae.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/MgrB_and_PmrB.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/OmpK.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/QRDR_120.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/RmST_profiles.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/SmST_profiles.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/YbST_profiles.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/clb_alleles.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/iro_alleles.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/iuc_alleles.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/kpneumoniae.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/rmpA2.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/rmp_alleles.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/species_mash_sketches.msh -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/wzi.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/wzi.txt -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ybt_alleles.fasta -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data creating /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp1.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp10.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp11.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp12.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp13.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp14.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp15.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp16.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp17.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp18.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp19.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp2.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp20.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp21.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp22.gff -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp3.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp4.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp5.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp6.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp7.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp8.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-08RyNN/kleborate-2.1.0/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp9.embl -> /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__init__.py to __init__.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/contig_stats.py to contig_stats.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/help_formatter.py to help_formatter.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/misc.py to misc.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/mlstBLAST.py to mlstBLAST.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/resBLAST.py to resBLAST.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/rmpA.py to rmpA.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/shv_mutations.py to shv_mutations.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/species.py to species.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/truncation.py to truncation.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/version.py to version.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/kaptive.py to kaptive.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__main__.py to __main__.cpython-39.pyc byte-compiling /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/blastn.py to blastn.cpython-39.pyc running install_egg_info Copying Kleborate.egg-info to /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/Kleborate-2.1.0.egg-info Skipping SOURCES.txt running install_scripts Installing kleborate script to /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/bin Building BLAST databases with makeblastdb: makeblastdb -dbtype nucl -in /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/CARD_v3.0.8.fasta makeblastdb -dbtype nucl -in /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/clb_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/rmpA2.fasta makeblastdb -dbtype nucl -in /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/iro_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/iuc_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/rmp_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta makeblastdb -dbtype nucl -in /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/wzi.fasta makeblastdb -dbtype nucl -in /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ybt_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/MgrB_and_PmrB.fasta makeblastdb -dbtype nucl -in /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/OmpK.fasta makeblastdb -dbtype nucl -in /build/kleborate-08RyNN/kleborate-2.1.0/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/QRDR_120.fasta  _ __ _ ______ ____ ____ _____ _______ ______ | | / /| | | ____| _ \ / __ \| __ \ /\|__ __| ____| | |/ / | | | |__ | |_) | | | | |__) | / \ | | | |__ | < | | | __| | _ <| | | | _ / / /\ \ | | | __| | |\ \ | |___| |____| |_) | |__| | | \ \/ ____ \| | | |____ |_| \_\|_____|______|____/ \____/|_| \_\/ \_\_| |______|  Kleborate is installed and ready to use! Example commands: kleborate --help kleborate -o results.txt -a *.fasta kleborate --resistance -o results.txt -a *.fasta kleborate --all -o results.txt -a *.fasta debian/rules override_dh_install make[1]: Entering directory '/build/kleborate-08RyNN/kleborate-2.1.0' dh_install # fasta.nin files will be (re)build at package installation time to not contain build path find debian -name "*.fasta.nin" -delete make[1]: Leaving directory '/build/kleborate-08RyNN/kleborate-2.1.0' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/kleborate-08RyNN/kleborate-2.1.0' dh_fixperms find debian -name "*.msh" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/kleborate-08RyNN/kleborate-2.1.0' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild dh_strip -a -a -O--buildsystem=pybuild dh_makeshlibs -a -a -O--buildsystem=pybuild dh_shlibdeps -a -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'kleborate' in '../kleborate_2.1.0-2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../kleborate_2.1.0-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/kleborate-08RyNN /tmp/kleborate-2.1.0-20_c4vqgq I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.z7Inm7Ko4T... I: success in 3022.2062 seconds md5: kleborate_2.1.0-2_amd64.deb: OK sha1: kleborate_2.1.0-2_amd64.deb: OK sha256: kleborate_2.1.0-2_amd64.deb: OK Checksums: OK