Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/k/kleborate/kleborate_2.0.1-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/kleborate-2.0.1-1oars167i/kleborate_2.0.1-1_all.buildinfo Get source package info: kleborate=2.0.1-1 Source URL: http://snapshot.notset.fr/mr/package/kleborate/2.0.1-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 binutils=2.35.1-4 binutils-common=2.35.1-4 binutils-x86-64-linux-gnu=2.35.1-4 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.1-1 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.3 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.1-1 gcc=4:10.2.0-1 gcc-10=10.2.1-1 gcc-10-base=10.2.1-1 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 kaptive=0.7.3-1 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libasan6=10.2.1-1 libatomic1=10.2.1-1 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-4 libblas3=3.9.0-3 libblkid1=2.36.1-2 libbrotli1=1.0.9-2+b2 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-5 libc-dev-bin=2.31-5 libc6=2.31-5 libc6-dev=2.31-5 libcap-ng0=0.7.9-2.2+b1 libcapnp-0.7.0=0.7.0-7 libcc1-0=10.2.1-1 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-4 libctf0=2.35.1-4 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.3 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.2.1-1 libgcc-s1=10.2.1-1 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran5=10.2.1-1 libglib2.0-0=2.66.3-2 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-1 libgpg-error0=1.38-2 libgsl25=2.6+dfsg-2 libgslcblas0=2.6+dfsg-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-5 libimagequant0=2.12.2-1.1 libisl23=0.23-1 libitm1=10.2.1-1 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.5-1.1 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 liblcms2-2=2.9-4+b1 liblmdb0=0.9.24-1 liblsan0=10.2.1-1 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmbedcrypto3=2.16.5-1 libmbedtls12=2.16.5-1 libmbedx509-0=2.16.5-1 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libmurmurhash2=1.5-2 libncursesw6=6.2+20201114-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.35-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libpython3-stdlib=3.9.0-4 libpython3.9-minimal=3.9.1-1 libpython3.9-stdlib=3.9.1-1 libquadmath0=10.2.1-1 libreadline8=8.1-1 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsigsegv2=2.12-2 libsmartcols1=2.36.1-2 libsqlite3-0=3.34.0-1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.1-1 libstdc++6=10.2.1-1 libsub-override-perl=0.09-2 libsystemd0=247.1-3 libtiff5=4.1.0+git191117-2 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.1-1 libubsan1=10.2.1-1 libuchardet0=0.0.7-1 libudev1=247.1-3 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libxau6=1:1.0.8-1+b2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mash=2.2.2+dfsg-1+b1 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncbi-blast+=2.10.1+ds-1 ncbi-data=6.1.20170106+dfsg1-9 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 po-debconf=1.0.21 python3=3.9.0-4 python3-biopython=1.78+dfsg-4 python3-distutils=3.8.6-1 python3-lib2to3=3.8.6-1 python3-minimal=3.9.0-4 python3-numpy=1:1.19.4-1+b1 python3-pil=8.0.1-1+b1 python3-pkg-resources=50.3.0-1 python3-reportlab=3.5.56-1 python3-reportlab-accel=3.5.56-1 python3-setuptools=50.3.0-1 python3.9=3.9.1-1 python3.9-minimal=3.9.1-1 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020d-1 util-linux=2.36.1-2 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201224T205101Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201207T144442Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d kleborate=2.0.1-1 && mkdir -p /build/kleborate-5HGiOh && dpkg-source --no-check -x /*.dsc /build/kleborate-5HGiOh/kleborate-2.0.1 && chown -R builduser:builduser /build/kleborate-5HGiOh" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kleborate-5HGiOh/kleborate-2.0.1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607456792" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/kleborate-5HGiOh /tmp/kleborate-2.0.1-1oars167i bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201207T144442Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.BStLFE3zc3 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.BStLFE3zc3 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201207T144442Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201207T144442Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1081 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4614 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201224T205101Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201207T144442Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.BStLFE3zc3 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201224T205101Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20201207T144442Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20201224T205101Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201224T205101Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201224T205101Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20201224T205101Z unstable/main amd64 Packages [11.6 MB] Fetched 34.3 MB in 30s (1145 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.BStLFE3zc3 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d kleborate=2.0.1-1 && mkdir -p /build/kleborate-5HGiOh && dpkg-source --no-check -x /*.dsc /build/kleborate-5HGiOh/kleborate-2.0.1 && chown -R builduser:builduser /build/kleborate-5HGiOh"' exec /tmp/mmdebstrap.BStLFE3zc3 Reading package lists... NOTICE: 'kleborate' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kleborate.git Please use: git clone https://salsa.debian.org/med-team/kleborate.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 89.4 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main kleborate 2.0.1-1 (dsc) [2213 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main kleborate 2.0.1-1 (tar) [83.4 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main kleborate 2.0.1-1 (diff) [5995 kB] Fetched 89.4 MB in 1min 12s (1239 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'kleborate_2.0.1-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting kleborate in /build/kleborate-5HGiOh/kleborate-2.0.1 dpkg-source: info: unpacking kleborate_2.0.1.orig.tar.gz dpkg-source: info: unpacking kleborate_2.0.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.patch dpkg-source: info: applying use_debian_installed_kaptive.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kleborate-5HGiOh/kleborate-2.0.1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607456792" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.BStLFE3zc3 dpkg-buildpackage: info: source package kleborate dpkg-buildpackage: info: source version 2.0.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-indep dh binary-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -i -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/species.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/mlstBLAST.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/__init__.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/misc.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/contig_stats.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/__main__.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/shv_mutations.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/blastn.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/truncation.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/kaptive.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/version.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/rmpA.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/resBLAST.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate package init file 'kaptive/__init__.py' not found (or not a regular file) running egg_info creating Kleborate.egg-info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt writing manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' writing manifest file 'Kleborate.egg-info/SOURCES.txt' creating /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/AbST_profiles.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/CARD_AMR_clustered.csv -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/CARD_v3.0.8.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/CbST_profiles.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/Klebsiella_pneumoniae.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/MgrB_and_PmrB.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/OmpK.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/QRDR_120.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/RmST_profiles.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/SmST_profiles.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/YbST_profiles.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/clb_alleles.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/iro_alleles.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/iuc_alleles.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/kpneumoniae.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/rmpA2.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/rmp_alleles.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/species_mash_sketches.msh -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/wzi.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/wzi.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/ybt_alleles.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data creating /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp1.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp10.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp11.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp12.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp13.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp14.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp2.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp3.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp4.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp5.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp6.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp7.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp8.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp9.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references dh_auto_test -i -O--buildsystem=pybuild I: pybuild base:232: cd /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build; python3.9 -m unittest discover -v test_ambiguous_bases_1 (test.test_contig_stats.TestContigStats) ... ok test_ambiguous_bases_2 (test.test_contig_stats.TestContigStats) ... ok test_ambiguous_bases_3 (test.test_contig_stats.TestContigStats) ... ok test_ambiguous_bases_4 (test.test_contig_stats.TestContigStats) ... ok test_count_1 (test.test_contig_stats.TestContigStats) ... ok test_count_2 (test.test_contig_stats.TestContigStats) ... ok test_longest_1 (test.test_contig_stats.TestContigStats) ... ok test_longest_2 (test.test_contig_stats.TestContigStats) ... ok test_n50_1 (test.test_contig_stats.TestContigStats) ... ok test_n50_2 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_1 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_2 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_3 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_4 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_5 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_6 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_7 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_8 (test.test_contig_stats.TestContigStats) ... ok test_total_size_1 (test.test_contig_stats.TestContigStats) ... ok test_total_size_2 (test.test_contig_stats.TestContigStats) ... ok test_total_size_3 (test.test_contig_stats.TestContigStats) ... ok test_total_size_4 (test.test_contig_stats.TestContigStats) ... ok test_iro_exact_1 (test.test_iro.TestIro) This test is an exact match for SmST1. ... ok test_iro_exact_33 (test.test_iro.TestIro) This test is an exact match for SmST33. ... ok test_iro_incomplete (test.test_iro.TestIro) This test is an exact match for only one allele. ... ok test_iro_inexact (test.test_iro.TestIro) This test is an inexact match for SmST33. There are single base changes in iroC and in ... ok test_iro_missing_1 (test.test_iro.TestIro) This test is a match for SmST1, except that it's missing iroN. ... ok test_iro_novel (test.test_iro.TestIro) This test is an exact match for alleles, but an unknown combination. ... ok test_iro_random (test.test_iro.TestIro) This test has just random sequence and should give no iro call. ... ok test_o_type_01 (test.test_kaptive.TestKaptive) ... ok test_o_type_02 (test.test_kaptive.TestKaptive) ... ok test_o_type_03 (test.test_kaptive.TestKaptive) ... ok test_o_type_04 (test.test_kaptive.TestKaptive) ... ok test_o_type_05 (test.test_kaptive.TestKaptive) ... ok test_o_type_06 (test.test_kaptive.TestKaptive) ... ok test_o_type_07 (test.test_kaptive.TestKaptive) ... ok test_o_type_08 (test.test_kaptive.TestKaptive) ... ok test_o_type_09 (test.test_kaptive.TestKaptive) ... ok test_o_type_10 (test.test_kaptive.TestKaptive) ... ok test_o_type_11 (test.test_kaptive.TestKaptive) ... ok test_o_type_12 (test.test_kaptive.TestKaptive) ... ok test_o_type_13 (test.test_kaptive.TestKaptive) ... ok test_o_type_14 (test.test_kaptive.TestKaptive) ... ok test_o_type_15 (test.test_kaptive.TestKaptive) ... ok test_o_type_16 (test.test_kaptive.TestKaptive) ... ok test_134 (test.test_mlst.TestMlst) ... ok test_83 (test.test_mlst.TestMlst) ... ok test_ba779 (test.test_mlst.TestMlst) ... ok test_chromosome_exact (test.test_mlst.TestMlst) This test is an exact match for ST23. ... ok test_chromosome_inexact (test.test_mlst.TestMlst) This test is is one base off from ST23 (single substitution in mdh_1 of G to A). ... ok test_chromosome_random (test.test_mlst.TestMlst) This test has just random sequence and should give no MLST call. ... ok test_kp_subspecies_1 (test.test_mlst.TestMlst) ... ok test_kp_subspecies_2 (test.test_mlst.TestMlst) ... ok test_kp_subspecies_3 (test.test_mlst.TestMlst) ... ok test_kp_subspecies_4 (test.test_mlst.TestMlst) ... ok test_kp_subspecies_5 (test.test_mlst.TestMlst) ... ok test_kp_subspecies_6 (test.test_mlst.TestMlst) ... ok test_kp_subspecies_7 (test.test_mlst.TestMlst) ... ok test_ozaenae (test.test_mlst.TestMlst) ... ok test_rhinoscleromatis (test.test_mlst.TestMlst) ... ok test_unknown_ST (test.test_mlst.TestMlst) This test has exact matches for alleles but in an unknown ST combination ... ok test_res_01 (test.test_res_aac.TestResAac) ... /usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/__init__.py:487: ResourceWarning: unclosed file <_io.TextIOWrapper name='/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' mode='r' encoding='UTF-8'> matrix = read(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_res_02 (test.test_res_aac.TestResAac) ... ok test_res_03 (test.test_res_aac.TestResAac) ... ok test_res_04 (test.test_res_aac.TestResAac) This is a tricky one (and the one which first highlighted the problem). The best bit-score ... ok test_res_05 (test.test_res_aac.TestResAac) Same as test_res_04, but with the hit on the other strand. ... ok test_res_01 (test.test_res_alleles.TestResAlleles) ... ok test_res_02 (test.test_res_alleles.TestResAlleles) ... ok test_res_03 (test.test_res_alleles.TestResAlleles) ... ok test_res_04 (test.test_res_alleles.TestResAlleles) ... ok test_res_05 (test.test_res_alleles.TestResAlleles) ... ok test_res_06 (test.test_res_alleles.TestResAlleles) ... ok test_res_07 (test.test_res_alleles.TestResAlleles) ... ok test_res_08 (test.test_res_alleles.TestResAlleles) ... ok test_res_09 (test.test_res_alleles.TestResAlleles) ... ok test_res_10 (test.test_res_alleles.TestResAlleles) ... ok test_res_11 (test.test_res_alleles.TestResAlleles) This test has the ABC-1 gene but with a stop codon in the middle. ... ok test_res_12 (test.test_res_alleles.TestResAlleles) This test has the ABC-1 gene but missing the first (start) codon. ... ok test_res_13 (test.test_res_alleles.TestResAlleles) This test has the ABC-1 gene but at only 50% coverage, so it goes to spurious hits. ... ok test_both_genes_intact (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... ok test_mgrb_missing (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... ok test_mgrb_missing_non_kp_complex (test.test_res_mgrb_pmrb.TestResMgrBPmrB) Setting the Kp complex variable to False should turn off the MgrB/PmrB tests. ... ok test_pmrb_early_stop (test.test_res_mgrb_pmrb.TestResMgrBPmrB) This tests an early stop mutation (without a frameshift) in pmrB. ... ok test_pmrb_early_stop_SRR2098701 (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... ok test_pmrb_frameshift (test.test_res_mgrb_pmrb.TestResMgrBPmrB) A frameshift in pmrB should cause an early stop and lead to a colisitin resistance call. ... ok test_both_genes_intact (test.test_res_omp.TestResOmp) ... ok test_ompk35_early_stop (test.test_res_omp.TestResOmp) This tests an early stop mutation (without a frameshift) in OmpK35. ... ok test_ompk35_frameshift (test.test_res_omp.TestResOmp) A frameshift in OmpK35 should cause an early stop and lead to a carbapenem resistance call. ... ok test_ompk36_missing (test.test_res_omp.TestResOmp) ... ok test_ompk36gd (test.test_res_omp.TestResOmp) ... ok test_ompk36td (test.test_res_omp.TestResOmp) ... ok test_ompk36td_non_kp_complex (test.test_res_omp.TestResOmp) Setting the Kp complex variable to False should turn off the OmpK tests. ... ok test_gyra (test.test_res_qrdr.TestResGyrAParC) ... ok test_gyra_and_parc (test.test_res_qrdr.TestResGyrAParC) ... ok test_gyra_and_parc_non_kp_complex (test.test_res_qrdr.TestResGyrAParC) Setting the Kp complex variable to False should turn off the QRDR tests. ... ok test_no_mutations (test.test_res_qrdr.TestResGyrAParC) ... ok test_parc (test.test_res_qrdr.TestResGyrAParC) ... ok test_tem (test.test_res_tem.TestResTem) ... ok test_rmp_19 (test.test_rmp.TestRmp) This test is an exact match for RmST19, an ST without any truncated alleles. ... ok test_rmp_21 (test.test_rmp.TestRmp) This test is an exact match for RmST21, an ST with a truncated allele. ... ok test_rmp_missing_1 (test.test_rmp.TestRmp) This test is a match for RmST1, except that it's missing rmpC. ... ok test_rmp_novel (test.test_rmp.TestRmp) This test is an exact match for alleles, but an unknown combination. ... ok test_rmp_random (test.test_rmp.TestRmp) This test has just random sequence and should give no rmp call. ... ok test_rmpa2_exact (test.test_rmp.TestRmp) This test has an exact match for rmpA2_1. ... ok test_rmpa2_exact_truncated (test.test_rmp.TestRmp) This test has an exact match for rmpA2_7. ... ok test_rmpa2_inexact (test.test_rmp.TestRmp) This test has an inexact match for rmpA2_1. ... ok test_rmpa2_random (test.test_rmp.TestRmp) This test has just random sequence and should give no rmpA2 call. ... ok test_bla_class_01 (test.test_shv.TestShvMutations) ... ok test_bla_class_02 (test.test_shv.TestShvMutations) ... ok test_bla_class_03 (test.test_shv.TestShvMutations) ... ok test_bla_class_04 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_01 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_02 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_03 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_04 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_05 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_06 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_07 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_08 (test.test_shv.TestShvMutations) ... ok test_shv_01 (test.test_shv.TestShvMutations) This test has an exact match for SHV-1. ... ok test_shv_02 (test.test_shv.TestShvMutations) This test has a match for SHV-1 with a mutation at site 238 (G -> Y). This changes the ... ok test_shv_03 (test.test_shv.TestShvMutations) Same as test 2, but the gene is on the reverse strand. ... ok test_shv_04 (test.test_shv.TestShvMutations) This test has a match for SHV-1 with a mutation at site 50 (G -> Y). This doesn't change ... ok test_shv_05 (test.test_shv.TestShvMutations) This test has an exact match for SHV-29. ... ok test_shv_06 (test.test_shv.TestShvMutations) This test has SHV-29 plus an inhibition mutation. ... ok test_shv_07 (test.test_shv.TestShvMutations) This test has SHV-1 with position 238 deleted. Since it's not in the omega loop, this isn't ... ok test_shv_08 (test.test_shv.TestShvMutations) This test has SHV-1 with a synonymous mutation in the omega loop (so not reported). ... ok test_shv_09 (test.test_shv.TestShvMutations) This test has SHV-1 with a nonsynonymous mutation in the omega loop (so it is reported). ... ok test_citrobacter (test.test_species.TestKpComplex) ... ok test_klebsiella_aerogenes (test.test_species.TestKpComplex) ... ok test_klebsiella_africanensis (test.test_species.TestKpComplex) ... ok test_klebsiella_grimontii (test.test_species.TestKpComplex) ... ok test_klebsiella_michiganensis (test.test_species.TestKpComplex) ... ok test_klebsiella_oxytoca (test.test_species.TestKpComplex) ... ok test_klebsiella_pneumoniae (test.test_species.TestKpComplex) ... ok test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestKpComplex) ... ok test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestKpComplex) ... ok test_klebsiella_quasivariicola (test.test_species.TestKpComplex) ... ok test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestKpComplex) ... ok test_klebsiella_variicola_subsp_variicola (test.test_species.TestKpComplex) ... ok test_raoultella_ornithinolytica (test.test_species.TestKpComplex) ... ok test_raoultella_planticola (test.test_species.TestKpComplex) ... ok test_raoultella_terrigena (test.test_species.TestKpComplex) ... ok test_salmonella (test.test_species.TestKpComplex) ... ok test_citrobacter (test.test_species.TestSpecies) ... ok test_klebsiella_aerogenes (test.test_species.TestSpecies) ... ok test_klebsiella_africana (test.test_species.TestSpecies) ... ok test_klebsiella_grimontii (test.test_species.TestSpecies) ... ok test_klebsiella_indica (test.test_species.TestSpecies) ... ok test_klebsiella_michiganensis (test.test_species.TestSpecies) ... ok test_klebsiella_oxytoca (test.test_species.TestSpecies) ... ok test_klebsiella_pasteurii (test.test_species.TestSpecies) ... ok test_klebsiella_pneumoniae (test.test_species.TestSpecies) ... ok test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestSpecies) ... ok test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestSpecies) ... ok test_klebsiella_quasivariicola (test.test_species.TestSpecies) ... ok test_klebsiella_spallanzanii (test.test_species.TestSpecies) ... ok test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestSpecies) ... ok test_klebsiella_variicola_subsp_variicola (test.test_species.TestSpecies) ... ok test_raoultella_ornithinolytica (test.test_species.TestSpecies) ... ok test_raoultella_planticola (test.test_species.TestSpecies) ... ok test_raoultella_terrigena (test.test_species.TestSpecies) ... ok test_salmonella (test.test_species.TestSpecies) ... ok test_nothing (test.test_summary.TestResScore) ... ok test_res_counts_1 (test.test_summary.TestResScore) ... ok test_res_counts_10 (test.test_summary.TestResScore) Resistance-by-truncation should add to the class count but not to the gene count (because ... ok test_res_counts_11 (test.test_summary.TestResScore) Spurious hits should not add to either the gene or class counts. ... ok test_res_counts_2 (test.test_summary.TestResScore) ... ok test_res_counts_3 (test.test_summary.TestResScore) Intrinsic Bla genes should not add to the counts. ... ok test_res_counts_4 (test.test_summary.TestResScore) Bla genes in columns other than 'Bla_chr' (e.g. 'Bla_ESBL_acquired') should add to the ... ok test_res_counts_5 (test.test_summary.TestResScore) Bla genes in columns other than 'Bla_chr' (e.g. 'Bla_acquired') should add to the counts. ... ok test_res_counts_6 (test.test_summary.TestResScore) Omp gene truncations should not add to the gene or class counts. ... ok test_res_counts_7 (test.test_summary.TestResScore) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_counts_8 (test.test_summary.TestResScore) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_counts_9 (test.test_summary.TestResScore) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_score_1 (test.test_summary.TestResScore) ... ok test_res_score_2 (test.test_summary.TestResScore) ... ok test_res_score_3 (test.test_summary.TestResScore) ... ok test_res_score_4 (test.test_summary.TestResScore) ... ok test_res_score_5 (test.test_summary.TestResScore) ... ok test_res_score_6 (test.test_summary.TestResScore) ... ok test_res_score_7 (test.test_summary.TestResScore) ... ok test_res_score_8 (test.test_summary.TestResScore) ... ok test_vir_score_1 (test.test_summary.TestResScore) ... ok test_vir_score_2 (test.test_summary.TestResScore) ... ok test_vir_score_3 (test.test_summary.TestResScore) ... ok test_vir_score_4 (test.test_summary.TestResScore) ... ok test_vir_score_5 (test.test_summary.TestResScore) ... ok test_vir_score_6 (test.test_summary.TestResScore) ... ok test_vir_score_7 (test.test_summary.TestResScore) ... ok ---------------------------------------------------------------------- Ran 190 tests in 213.500s OK create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp running install running build running build_py package init file 'kaptive/__init__.py' not found (or not a regular file) running egg_info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' writing manifest file 'Kleborate.egg-info/SOURCES.txt' running install_lib creating /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr creating /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib creating /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9 creating /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages creating /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/species.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/mlstBLAST.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__init__.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/misc.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/contig_stats.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__main__.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/shv_mutations.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/blastn.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/truncation.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/kaptive.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate creating /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/clb_alleles.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/species_mash_sketches.msh -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/AbST_profiles.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/wzi.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/CbST_profiles.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ybt_alleles.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/OmpK.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/MgrB_and_PmrB.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/iro_alleles.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/kpneumoniae.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data creating /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp11.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp9.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp4.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp3.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp8.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp5.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp14.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp10.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp2.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp12.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp6.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp7.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp1.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp13.embl -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/wzi.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/CARD_AMR_clustered.csv -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/iuc_alleles.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/RmST_profiles.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/SmST_profiles.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/YbST_profiles.txt -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/rmpA2.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/rmp_alleles.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/QRDR_120.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/CARD_v3.0.8.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/Klebsiella_pneumoniae.fasta -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data creating /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/version.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/__main__.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/rmpA.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/misc.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/kaptive.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/species.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/truncation.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/mlstBLAST.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/__init__.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/blastn.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/shv_mutations.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/resBLAST.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/contig_stats.cpython-39.pyc -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/version.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/rmpA.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-5HGiOh/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/resBLAST.py -> /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/species.py to species.cpython-39.pyc byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/mlstBLAST.py to mlstBLAST.cpython-39.pyc byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__init__.py to __init__.cpython-39.pyc byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/misc.py to misc.cpython-39.pyc byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/contig_stats.py to contig_stats.cpython-39.pyc byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__main__.py to __main__.cpython-39.pyc byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/shv_mutations.py to shv_mutations.cpython-39.pyc byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/blastn.py to blastn.cpython-39.pyc byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/truncation.py to truncation.cpython-39.pyc byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/kaptive.py to kaptive.cpython-39.pyc byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/version.py to version.cpython-39.pyc byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/rmpA.py to rmpA.cpython-39.pyc byte-compiling /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/resBLAST.py to resBLAST.cpython-39.pyc running install_egg_info Copying Kleborate.egg-info to /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/Kleborate-2.0.1.egg-info Skipping SOURCES.txt running install_scripts Installing kleborate script to /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/bin Building BLAST databases with makeblastdb: makeblastdb -dbtype nucl -in /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/CARD_v3.0.8.fasta makeblastdb -dbtype nucl -in /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/clb_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/rmpA2.fasta makeblastdb -dbtype nucl -in /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/iro_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/iuc_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/rmp_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta makeblastdb -dbtype nucl -in /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/wzi.fasta makeblastdb -dbtype nucl -in /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ybt_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/MgrB_and_PmrB.fasta makeblastdb -dbtype nucl -in /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/OmpK.fasta makeblastdb -dbtype nucl -in /build/kleborate-5HGiOh/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/QRDR_120.fasta  _ __ _ ______ ____ ____ _____ _______ ______ | | / /| | | ____| _ \ / __ \| __ \ /\|__ __| ____| | |/ / | | | |__ | |_) | | | | |__) | / \ | | | |__ | < | | | __| | _ <| | | | _ / / /\ \ | | | __| | |\ \ | |___| |____| |_) | |__| | | \ \/ ____ \| | | |____ |_| \_\|_____|______|____/ \____/|_| \_\/ \_\_| |______|  Kleborate is installed and ready to use! Example commands: kleborate --help kleborate -o results.txt -a *.fasta kleborate --resistance -o results.txt -a *.fasta kleborate --all -o results.txt -a *.fasta debian/rules override_dh_install make[1]: Entering directory '/build/kleborate-5HGiOh/kleborate-2.0.1' dh_install # fasta.nin files will be (re)build at package installation time to not contain build path find debian -name "*.fasta.nin" -delete make[1]: Leaving directory '/build/kleborate-5HGiOh/kleborate-2.0.1' dh_installdocs -i -O--buildsystem=pybuild dh_installchangelogs -i -O--buildsystem=pybuild dh_installman -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild E: dh_python3 dh_python3:176: no package to act on (python3-foo or one with ${python3:Depends} in Depends) dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/kleborate-5HGiOh/kleborate-2.0.1' dh_fixperms find debian -name "*.msh" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/kleborate-5HGiOh/kleborate-2.0.1' dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'kleborate-examples' in '../kleborate-examples_2.0.1-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../kleborate_2.0.1-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/kleborate-5HGiOh /tmp/kleborate-2.0.1-1oars167i I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.BStLFE3zc3... I: success in 825.7334 seconds md5: kleborate-examples_2.0.1-1_all.deb: OK sha1: kleborate-examples_2.0.1-1_all.deb: OK sha256: kleborate-examples_2.0.1-1_all.deb: OK Checksums: OK