Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/k/kissplice/kissplice_2.5.3-3+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/kissplice-2.5.3-3+b13wlomak7/kissplice_2.5.3-3+b1_amd64.buildinfo Get source package info: kissplice=2.5.3-3 Source URL: http://snapshot.notset.fr/mr/package/kissplice/2.5.3-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc2-1 binutils=2.35.1-3 binutils-common=2.35.1-3 binutils-x86-64-linux-gnu=2.35.1-3 bsdextrautils=2.36.1-1 bsdutils=1:2.36.1-1 build-essential=12.8 bzip2=1.0.8-4 cmake=3.18.4-1 cmake-data=3.18.4-1 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-17 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.38-5 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.0-17 gcc=4:10.2.0-1 gcc-10=10.2.0-17 gcc-10-base=10.2.0-17 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.58 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libasan6=10.2.0-17 libatomic1=10.2.0-17 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-3 libblkid1=2.36.1-1 libbrotli1=1.0.9-2+b1 libbz2-1.0=1.0.8-4 libc-bin=2.31-4 libc-dev-bin=2.31-4 libc6=2.31-4 libc6-dev=2.31-4 libcap-ng0=0.7.9-2.2 libcc1-0=10.2.0-17 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-3 libctf0=2.35.1-3 libcurl4=7.72.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.0-17 libgcc-s1=10.2.0-17 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libglib2.0-0=2.66.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.6.15-4 libgomp1=10.2.0-17 libgpg-error0=1.38-2 libgssapi-krb5-2=1.17-10 libhogweed6=3.6-2 libicu67=67.1-4 libidn2-0=2.3.0-4 libisl22=0.22.1-1 libitm1=10.2.0-17 libjsoncpp1=1.7.4-3.1 libk5crypto3=1.17-10 libkeyutils1=1.6.1-2 libkrb5-3=1.17-10 libkrb5support0=1.17-10 libldap-2.4-2=2.4.56+dfsg-1 liblsan0=10.2.0-17 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmount1=2.36.1-1 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20200918-1 libncursesw6=6.2+20200918-1 libnettle8=3.6-2 libnghttp2-14=1.41.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnss-nis=3.1-4 libnss-nisplus=1.3-4 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libprocps8=2:3.3.16-5 libpsl5=0.21.0-1.1 libpython3-dev=3.9.0-3 libpython3-stdlib=3.9.0-3 libpython3.9=3.9.0-5 libpython3.9-dev=3.9.0-5 libpython3.9-minimal=3.9.0-5 libpython3.9-stdlib=3.9.0-5 libquadmath0=10.2.0-17 libreadline8=8.1~rc2-2 librhash0=1.4.0-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsigsegv2=2.12-2 libsmartcols1=2.36.1-1 libsqlite3-0=3.33.0-1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-17 libstdc++6=10.2.0-17 libsub-override-perl=0.09-2 libsystemd0=246.6-3 libtasn1-6=4.16.0-2 libtinfo6=6.2+20200918-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-17 libubsan1=10.2.0-17 libuchardet0=0.0.7-1 libudev1=246.6-3 libunistring2=0.9.10-4 libuuid1=2.36.1-1 libuv1=1.40.0-1 libxml2=2.9.10+dfsg-6.2 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.6-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20200918-1 ncurses-bin=6.2+20200918-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 po-debconf=1.0.21 procps=2:3.3.16-5 python3=3.9.0-3 python3-dev=3.9.0-3 python3-distutils=3.8.6-1 python3-lib2to3=3.8.6-1 python3-minimal=3.9.0-3 python3.9=3.9.0-5 python3.9-dev=3.9.0-5 python3.9-minimal=3.9.0-5 readline-common=8.1~rc2-2 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.30+dfsg-7 util-linux=2.36.1-1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201119T152556Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d kissplice=2.5.3-3 && mkdir -p /build/kissplice-GuCwjZ && dpkg-source --no-check -x /*.dsc /build/kissplice-GuCwjZ/kissplice-2.5.3 && cd /build/kissplice-GuCwjZ/kissplice-2.5.3 && { printf '%s' 'kissplice (2.5.3-3+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.9 as default -- all / amd64 / i386 Build Daemon (x86-conova-01) Wed, 18 Nov 2020 23:46:10 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/kissplice-GuCwjZ" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kissplice-GuCwjZ/kissplice-2.5.3 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605743170" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/kissplice-GuCwjZ /tmp/kissplice-2.5.3-3+b13wlomak7 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201119T152556Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.BxxFhATivP as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.BxxFhATivP Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201119T152556Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201119T152556Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (992 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4690 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201119T152556Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.BxxFhATivP Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201119T152556Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 21s (1055 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.BxxFhATivP I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d kissplice=2.5.3-3 && mkdir -p /build/kissplice-GuCwjZ && dpkg-source --no-check -x /*.dsc /build/kissplice-GuCwjZ/kissplice-2.5.3 && cd /build/kissplice-GuCwjZ/kissplice-2.5.3 && { printf '%s' 'kissplice (2.5.3-3+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.9 as default -- all / amd64 / i386 Build Daemon (x86-conova-01) Wed, 18 Nov 2020 23:46:10 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/kissplice-GuCwjZ"' exec /tmp/mmdebstrap.BxxFhATivP Reading package lists... NOTICE: 'kissplice' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kissplice.git Please use: git clone https://salsa.debian.org/med-team/kissplice.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 10.2 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main kissplice 2.5.3-3 (dsc) [2243 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main kissplice 2.5.3-3 (tar) [10.2 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main kissplice 2.5.3-3 (diff) [13.5 kB] Fetched 10.2 MB in 8s (1262 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'kissplice_2.5.3-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting kissplice in /build/kissplice-GuCwjZ/kissplice-2.5.3 dpkg-source: info: unpacking kissplice_2.5.3.orig.tar.gz dpkg-source: info: unpacking kissplice_2.5.3-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-bcalm-install.patch dpkg-source: info: applying tests-2to3.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc10.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kissplice-GuCwjZ/kissplice-2.5.3 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605743170" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.BxxFhATivP dpkg-buildpackage: info: source package kissplice dpkg-buildpackage: info: source version 2.5.3-3+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3' dh_auto_clean rm -rf bcalm/README.md tests/functional_tests/__pycache__/ tests/integration_tests/__pycache__/ make[1]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3' dh_clean debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3' dh_auto_configure -- -DCMAKE_INSTALL_LIBEXECDIR=lib/ cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_LIBEXECDIR=lib/ .. -- The CXX compiler identification is GNU 10.2.0 -- The C compiler identification is GNU 10.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- gatb-core is here '/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core' -- CppUnit NOT FOUND -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed -- Check size of __uint128_t -- Check size of __uint128_t - done -- SSE 4.2 detected -- Options: -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation -- SOVERSION: 10.2.1 -- SOVERSION_TOOLS: 10.0.4 -- SOVERSION_CXX: 13.0.0 -- SOVERSION_F: 10.0.4 -- SOVERSION_HL: 10.1.1 -- SOVERSION_HL_CXX: 11.1.0 -- SOVERSION_HL_F: 10.0.3 -- Check for STD namespace -- Check for STD namespace - found -- Looking for ceil in m; -- Looking for ceil in m; - found -- Looking for dlopen in dl;m -- Looking for dlopen in dl;m - found -- Looking for WSAStartup in ws2_32;m;dl -- Looking for WSAStartup in ws2_32;m;dl - not found -- Looking for gethostbyname in wsock32;m;dl -- Looking for gethostbyname in wsock32;m;dl - not found -- Looking for gethostname in ucb;m;dl -- Looking for gethostname in ucb;m;dl - not found -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Performing Other Test STDC_HEADERS - Success CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFiles.cmake:120 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: m;dl For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): bcalm/gatb-core/gatb-core/thirdparty/hdf5/config/cmake_ext_mod/ConfigureChecks.cmake:192 (CHECK_INCLUDE_FILES) bcalm/gatb-core/gatb-core/thirdparty/hdf5/config/cmake_ext_mod/ConfigureChecks.cmake:201 (CHECK_INCLUDE_FILE_CONCAT) bcalm/gatb-core/gatb-core/thirdparty/hdf5/config/cmake/ConfigureChecks.cmake:5 (include) bcalm/gatb-core/gatb-core/thirdparty/hdf5/CMakeLists.txt:383 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for include file sys/resource.h -- Looking for include file sys/resource.h - found -- Looking for include files sys/resource.h, sys/time.h -- Looking for include files sys/resource.h, sys/time.h - found -- Looking for 3 include files sys/resource.h, ..., unistd.h -- Looking for 3 include files sys/resource.h, ..., unistd.h - found -- Looking for 4 include files sys/resource.h, ..., sys/ioctl.h -- Looking for 4 include files sys/resource.h, ..., sys/ioctl.h - found -- Looking for 5 include files sys/resource.h, ..., sys/stat.h -- Looking for 5 include files sys/resource.h, ..., sys/stat.h - found -- Looking for 6 include files sys/resource.h, ..., sys/socket.h -- Looking for 6 include files sys/resource.h, ..., sys/socket.h - found -- Looking for 7 include files sys/resource.h, ..., sys/types.h -- Looking for 7 include files sys/resource.h, ..., sys/types.h - found -- Looking for 8 include files sys/resource.h, ..., stddef.h -- Looking for 8 include files sys/resource.h, ..., stddef.h - found -- Looking for 9 include files sys/resource.h, ..., setjmp.h -- Looking for 9 include files sys/resource.h, ..., setjmp.h - found -- Looking for 10 include files sys/resource.h, ..., features.h -- Looking for 10 include files sys/resource.h, ..., features.h - found -- Looking for 11 include files sys/resource.h, ..., dirent.h -- Looking for 11 include files sys/resource.h, ..., dirent.h - found -- Looking for 12 include files sys/resource.h, ..., stdint.h -- Looking for 12 include files sys/resource.h, ..., stdint.h - found -- Looking for C++ include stdint.h -- Looking for C++ include stdint.h - found -- Looking for 13 include files sys/resource.h, ..., mach/mach_time.h -- Looking for 13 include files sys/resource.h, ..., mach/mach_time.h - not found -- Looking for 13 include files sys/resource.h, ..., io.h -- Looking for 13 include files sys/resource.h, ..., io.h - not found -- Looking for 13 include files sys/resource.h, ..., winsock2.h -- Looking for 13 include files sys/resource.h, ..., winsock2.h - not found -- Looking for 13 include files sys/resource.h, ..., sys/timeb.h -- Looking for 13 include files sys/resource.h, ..., sys/timeb.h - found -- Looking for 14 include files sys/resource.h, ..., globus/common.h -- Looking for 14 include files sys/resource.h, ..., globus/common.h - not found -- Looking for 14 include files sys/resource.h, ..., pdb.h -- Looking for 14 include files sys/resource.h, ..., pdb.h - not found -- Looking for 14 include files sys/resource.h, ..., pthread.h -- Looking for 14 include files sys/resource.h, ..., pthread.h - found -- Looking for 15 include files sys/resource.h, ..., srbclient.h -- Looking for 15 include files sys/resource.h, ..., srbclient.h - not found -- Looking for 15 include files sys/resource.h, ..., string.h -- Looking for 15 include files sys/resource.h, ..., string.h - found -- Looking for 16 include files sys/resource.h, ..., strings.h -- Looking for 16 include files sys/resource.h, ..., strings.h - found -- Looking for 17 include files sys/resource.h, ..., stdlib.h -- Looking for 17 include files sys/resource.h, ..., stdlib.h - found -- Looking for 18 include files sys/resource.h, ..., memory.h -- Looking for 18 include files sys/resource.h, ..., memory.h - found -- Looking for 19 include files sys/resource.h, ..., dlfcn.h -- Looking for 19 include files sys/resource.h, ..., dlfcn.h - found -- Looking for 20 include files sys/resource.h, ..., inttypes.h -- Looking for 20 include files sys/resource.h, ..., inttypes.h - found -- Looking for 21 include files sys/resource.h, ..., netinet/in.h -- Looking for 21 include files sys/resource.h, ..., netinet/in.h - found -- Performing TEST_LFS_WORKS... yes -- Performing Other Test HAVE_OFF64_T - Success -- Looking for lseek64 -- Looking for lseek64 - found -- Looking for fseeko64 -- Looking for fseeko64 - found -- Looking for ftello64 -- Looking for ftello64 - found -- Looking for ftruncate64 -- Looking for ftruncate64 - found -- Looking for fseeko -- Looking for fseeko - found -- Looking for ftello -- Looking for ftello - found -- Performing Other Test HAVE_STAT64_STRUCT - Success -- Looking for fstat64 -- Looking for fstat64 - found -- Looking for stat64 -- Looking for stat64 - found -- Check size of char -- Check size of char - done -- Check size of short -- Check size of short - done -- Check size of int -- Check size of int - done -- Check size of unsigned -- Check size of unsigned - done -- Check size of long -- Check size of long - done -- Check size of long long -- Check size of long long - done -- Check size of __int64 -- Check size of __int64 - failed -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Check size of long double -- Check size of long double - done -- Check size of int8_t -- Check size of int8_t - done -- Check size of uint8_t -- Check size of uint8_t - done -- Check size of int_least8_t -- Check size of int_least8_t - done -- Check size of uint_least8_t -- Check size of uint_least8_t - done -- Check size of int_fast8_t -- Check size of int_fast8_t - done -- Check size of uint_fast8_t -- Check size of uint_fast8_t - done -- Check size of int16_t -- Check size of int16_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Check size of int_least16_t -- Check size of int_least16_t - done -- Check size of uint_least16_t -- Check size of uint_least16_t - done -- Check size of int_fast16_t -- Check size of int_fast16_t - done -- Check size of uint_fast16_t -- Check size of uint_fast16_t - done -- Check size of int32_t -- Check size of int32_t - done -- Check size of uint32_t -- Check size of uint32_t - done -- Check size of int_least32_t -- Check size of int_least32_t - done -- Check size of uint_least32_t -- Check size of uint_least32_t - done -- Check size of int_fast32_t -- Check size of int_fast32_t - done -- Check size of uint_fast32_t -- Check size of uint_fast32_t - done -- Check size of int64_t -- Check size of int64_t - done -- Check size of uint64_t -- Check size of uint64_t - done -- Check size of int_least64_t -- Check size of int_least64_t - done -- Check size of uint_least64_t -- Check size of uint_least64_t - done -- Check size of int_fast64_t -- Check size of int_fast64_t - done -- Check size of uint_fast64_t -- Check size of uint_fast64_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of ssize_t -- Check size of ssize_t - done -- Check size of ptrdiff_t -- Check size of ptrdiff_t - done -- Check size of off_t -- Check size of off_t - done -- Check size of off64_t -- Check size of off64_t - done -- Looking for 22 include files sys/resource.h, ..., stdbool.h -- Looking for 22 include files sys/resource.h, ..., stdbool.h - found -- Check size of _Bool -- Check size of _Bool - done -- Performing Other Test DEV_T_IS_SCALAR - Success -- Looking for CLOCK_MONOTONIC -- Looking for CLOCK_MONOTONIC - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Performing Other Test HAVE_TM_GMTOFF - Success -- Performing Other Test HAVE___TM_GMTOFF - Failed -- Performing Other Test HAVE_STRUCT_TIMEZONE - Success -- Performing Other Test GETTIMEOFDAY_GIVES_TZ - Success -- Performing Other Test TIME_WITH_SYS_TIME - Success -- Performing Other Test HAVE_TM_ZONE - Failed -- Performing Other Test HAVE_STRUCT_TM_TM_ZONE - Failed -- Performing Other Test HAVE_TIMEZONE - Success -- Performing Other Test HAVE_STAT_ST_BLOCKS - Success -- Looking for ioctl -- Looking for ioctl - found -- Performing Other Test HAVE_STRUCT_VIDEOCONFIG - Failed -- Performing Other Test HAVE_STRUCT_TEXT_INFO - Failed -- Looking for _getvideoconfig -- Looking for _getvideoconfig - not found -- Looking for gettextinfo -- Looking for gettextinfo - not found -- Looking for _scrsize -- Looking for _scrsize - not found -- Looking for GetConsoleScreenBufferInfo -- Looking for GetConsoleScreenBufferInfo - not found -- Looking for TIOCGWINSZ -- Looking for TIOCGWINSZ - found -- Looking for TIOCGETD -- Looking for TIOCGETD - found -- Looking for getpwuid -- Looking for getpwuid - found -- Looking for alarm -- Looking for alarm - found -- Looking for fork -- Looking for fork - found -- Looking for frexpf -- Looking for frexpf - found -- Looking for frexpl -- Looking for frexpl - found -- Looking for gethostname -- Looking for gethostname - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for lstat -- Looking for lstat - found -- Looking for rand_r -- Looking for rand_r - found -- Looking for random -- Looking for random - found -- Looking for setsysinfo -- Looking for setsysinfo - not found -- Looking for signal -- Looking for signal - found -- Looking for longjmp -- Looking for longjmp - found -- Looking for setjmp -- Looking for setjmp - found -- Looking for siglongjmp -- Looking for siglongjmp - found -- Looking for sigsetjmp -- Looking for sigsetjmp - not found -- Looking for sigprocmask -- Looking for sigprocmask - found -- Looking for snprintf -- Looking for snprintf - found -- Looking for srandom -- Looking for srandom - found -- Looking for strdup -- Looking for strdup - found -- Looking for symlink -- Looking for symlink - found -- Looking for system -- Looking for system - found -- Looking for tmpfile -- Looking for tmpfile - found -- Looking for asprintf -- Looking for asprintf - found -- Looking for vasprintf -- Looking for vasprintf - found -- Looking for waitpid -- Looking for waitpid - found -- Looking for vsnprintf -- Looking for vsnprintf - found -- Performing Other Test VSNPRINTF_WORKS - Success -- Looking for sigsetjmp -- Looking for sigsetjmp - found -- Performing Other Test HAVE_ATTRIBUTE - Success -- Performing Other Test HAVE_C99_FUNC - Success -- Performing Other Test HAVE_FUNCTION - Success -- Performing Other Test HAVE_C99_DESIGNATED_INITIALIZER - Success -- Performing Other Test SYSTEM_SCOPE_THREADS - Success -- Performing Other Test HAVE_SOCKLEN_T - Success -- Performing Other Test CXX_HAVE_OFFSETOF - Success -- Performing CXX Test OLD_HEADER_FILENAME - Failed -- Performing CXX Test H5_NO_NAMESPACE - Failed -- Performing CXX Test H5_NO_STD - Failed -- Performing CXX Test BOOL_NOTDEFINED - Failed -- Performing CXX Test NO_STATIC_CAST - Failed -- Performing Other Test HAVE_INLINE - Success -- Performing Other Test HAVE___INLINE__ - Success -- Performing Other Test HAVE___INLINE - Success -- Checking for appropriate format for 64 bit long: -- Checking for appropriate format for 64 bit long: found "l" -- Looking for difftime -- Looking for difftime - found -- Looking for clock_gettime -- Looking for clock_gettime - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for clock_gettime in posix4 -- Looking for clock_gettime in posix4 - not found -- Performing Other Test HAVE_DIRECT - Success -- Checking IF your system converts long double to (unsigned) long values with special algorithm... no -- Checking IF your system can convert (unsigned) long to long double values with special algorithm... no -- Checking IF correctly converting long double to (unsigned) long long values... yes -- Checking IF correctly converting (unsigned) long long to long double values... yes -- Checking IF alignment restrictions are strictly enforced... yes -- Could NOT find ZLIB (missing: ZLIB_DIR) -- Filter ZLIB is ON CMake Warning (dev) at bcalm/gatb-core/gatb-core/thirdparty/hdf5/CMakeLists.txt:668 (set): implicitly converting 'INTEGER' to 'STRING' type. This warning is for project developers. Use -Wno-dev to suppress it. DYNAMIC BINARIES for gatb-h5dump -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3' dh_auto_build -a cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/kissplice-GuCwjZ/kissplice-2.5.3 -B/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/CMakeFiles /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/depend make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/DependInfo.cmake --color= make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/depend make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= Scanning dependencies of target thirdparty_copy make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' Scanning dependencies of target H5detect Scanning dependencies of target H5make_libsettings make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build Scanning dependencies of target hdf5_postbuild make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/json make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF [ 0%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/H5detect.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/H5detect.dir/H5detect.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5detect.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 0%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5make_libsettings.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/BooPHF/BooPHF.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF/ cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/json/json.hpp /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/json/ cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 0%] Built target thirdparty_copy make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake --color= cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Aprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 Scanning dependencies of target ks_kissreadsSplice cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2pkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/commons.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/commons.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/commons.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2private.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2public.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5CSprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 0%] Linking C executable ../../../../../../lib/kissplice/H5make_libsettings cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/H5make_libsettings.dir/link.txt --verbose=1 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Edefin.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o -o ../../../../../../lib/kissplice/H5make_libsettings cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Einit.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epubgen.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 0%] Built target H5make_libsettings make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake --color= cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eterm.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 Scanning dependencies of target ks_kissreadsSNPS make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/commons.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDcore.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDdirect.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDfamily.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDlog.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpi.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpio.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmulti.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDsec2.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDstdio.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDwindows.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FLprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FOprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/extension_algorithm.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HPprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ipkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Iprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ipublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/extension_algorithm.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MMprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MMpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/interface_libchash.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Opkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Opublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oshared.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLextern.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ppkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ppublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RCprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RSprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/interface_libchash.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SLprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5STprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Spkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 0%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/libchash.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Spublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5TSprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5VMprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5WBprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5api_adpt.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5overflow.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5private.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5public.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5version.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 1%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/libchash.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5win32defs.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/hdf5.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5pubconf.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 1%] Built target hdf5_postbuild make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/depend make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake --color= Scanning dependencies of target ks_clean_duplicates make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/build make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 2%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/CleanDuplicates.cpp [ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/outputs.c [ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/outputs.c [ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o -c 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-I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/fragment_index.c [ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/coherent_algorithm.c [ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/couple.c [ 4%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/fragment_index.c [ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/kissReads.c [ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/kissReads.c [ 5%] Linking C executable ../../../../../../lib/kissplice/H5detect cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/H5detect.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/H5detect.dir/H5detect.c.o -o ../../../../../../lib/kissplice/H5detect make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 5%] Built target H5detect [ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/list.c.o [ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/tree.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/list.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/list.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/tree.c [ 5%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/CycleCompression.cpp [ 5%] Linking C executable ../../../lib/kissplice/ks_kissreadsSplice cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSplice.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSplice.dir/commons.c.o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o CMakeFiles/ks_kissreadsSplice.dir/list.c.o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -o ../../../lib/kissplice/ks_kissreadsSplice -lm -lz [ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/list.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/list.c make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 5%] Built target ks_kissreadsSplice [ 5%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/NGraph.cpp [ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src/tree.c [ 6%] Linking C executable ../../../lib/kissplice/ks_kissreadsSNPS cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSNPS.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -o ../../../lib/kissplice/ks_kissreadsSNPS -lm -lz make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 6%] Built target ks_kissreadsSNPS make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake --color= Scanning dependencies of target ks_bubble_enumeration make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/build make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 6%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/BubbleEnumeration.cpp [ 6%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/CGraph.cpp In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/BubbleEnumeration.cpp:61: /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/BubbleEnumeration.h:124:1: warning: ‘typedef’ was ignored in this declaration 124 | typedef struct Path { | ^~~~~~~ [ 6%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/CEdge.cpp [ 7%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/LabelledCEdge.cpp [ 7%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/NNode.cpp [ 7%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/NEdge.cpp [ 7%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/Utils.cpp [ 7%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/CycleCompression.cpp make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake --color= Scanning dependencies of target ks_run_modules make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/build make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 7%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/run.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/run.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/run.cpp [ 8%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/NGraph.cpp [ 8%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/CycleCompression.cpp [ 9%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NGraph.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/NGraph.cpp [ 9%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/CGraph.cpp [ 10%] Linking CXX executable ../lib/kissplice/ks_clean_duplicates cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_clean_duplicates.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -o ../lib/kissplice/ks_clean_duplicates make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 10%] Built target ks_clean_duplicates make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color= Scanning dependencies of target ks_error_removal make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/build make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 10%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/ErrorRemoval.cpp [ 10%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/CEdge.cpp [ 10%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/LabelledCEdge.cpp [ 11%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/NNode.cpp [ 11%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/NEdge.cpp [ 11%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/CEdge.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/CEdge.cpp [ 11%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/LabelledCEdge.cpp [ 12%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/Utils.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/Utils.cpp [ 12%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/Utils.cpp [ 12%] Linking CXX executable ../lib/kissplice/ks_error_removal cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_error_removal.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -o ../lib/kissplice/ks_error_removal make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 12%] Built target ks_error_removal make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color= Scanning dependencies of target ks_print_bcc make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/build make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 13%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/PrintBcc.cpp [ 13%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CGraph.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/CGraph.cpp [ 13%] Linking CXX executable ../lib/kissplice/ks_bubble_enumeration cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_bubble_enumeration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -o ../lib/kissplice/ks_bubble_enumeration make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 13%] Built target ks_bubble_enumeration make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 13%] Generating ../H5lib_settings.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 && /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice/H5make_libsettings > /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5lib_settings.c [ 13%] Generating ../H5Tinit.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && ../../../../../../lib/kissplice/H5detect > /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5Tinit.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/DependInfo.cmake --color= In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/PrintBcc.cpp:51: /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/BubbleEnumeration.h:124:1: warning: ‘typedef’ was ignored in this declaration 124 | typedef struct Path { | ^~~~~~~ Scanning dependencies of target hdf5 make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 13%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5.c [ 13%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/Utils.cpp [ 14%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5checksum.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5checksum.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5checksum.c [ 14%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CEdge.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/CEdge.cpp [ 14%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5dbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5dbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5dbg.c [ 14%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/LabelledCEdge.cpp [ 14%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5system.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5system.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5system.c [ 14%] Linking CXX executable ../lib/kissplice/ks_print_bcc cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_print_bcc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -o ../lib/kissplice/ks_print_bcc make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 14%] Built target ks_print_bcc [ 14%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5timer.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5timer.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5timer.c [ 15%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NNode.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/NNode.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/NNode.cpp [ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5trace.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5trace.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5trace.c [ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5A.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5A.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5A.c [ 16%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NEdge.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/NEdge.cpp [ 16%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/SplitBcc.cpp [ 16%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/Utils.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/modules -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/modules/Utils.cpp [ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Abtree2.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Abtree2.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Abtree2.c [ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Adense.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Adense.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Adense.c [ 16%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Adeprec.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Adeprec.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Adeprec.c [ 17%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Aint.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Aint.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Aint.c [ 18%] Linking CXX executable ../lib/kissplice/ks_run_modules cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_run_modules.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_run_modules.dir/run.cpp.o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o CMakeFiles/ks_run_modules.dir/NNode.cpp.o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -o ../lib/kissplice/ks_run_modules make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 18%] Built target ks_run_modules [ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Atest.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Atest.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Atest.c [ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5AC.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5AC.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5AC.c [ 18%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B.c [ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2.c [ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2cache.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2cache.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2cache.c [ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2dbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2dbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2dbg.c [ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2hdr.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2hdr.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2hdr.c [ 19%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2stat.c.o [ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2int.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2stat.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2stat.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2int.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2int.c [ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5B2test.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5B2test.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2test.c [ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Bcache.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Bcache.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bcache.c [ 20%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Bdbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Bdbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bdbg.c [ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5D.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5D.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5D.c [ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dcompact.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dcompact.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dcompact.c [ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dbtree.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dbtree.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dbtree.c [ 21%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dchunk.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dchunk.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dchunk.c [ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dcontig.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dcontig.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dcontig.c [ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ddbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ddbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ddbg.c [ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ddeprec.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ddeprec.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ddeprec.c [ 22%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Defl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Defl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Defl.c [ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dfill.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dfill.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dfill.c [ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dint.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dint.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dint.c [ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dio.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dio.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dio.c [ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dlayout.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dlayout.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dlayout.c [ 23%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dmpio.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dmpio.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dmpio.c [ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Doh.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Doh.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Doh.c [ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dscatgath.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dscatgath.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dscatgath.c [ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dselect.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dselect.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dselect.c [ 24%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Dtest.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Dtest.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dtest.c [ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5E.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5E.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5E.c [ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Edeprec.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Edeprec.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Edeprec.c [ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Eint.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Eint.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eint.c [ 25%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5F.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5F.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5F.c [ 26%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fint.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE 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bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Faccum.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Faccum.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Faccum.c [ 26%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fcwfs.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fcwfs.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fcwfs.c [ 26%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fdbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fdbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fdbg.c [ 26%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fefc.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE 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bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ffake.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ffake.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ffake.c [ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fio.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fio.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fio.c [ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fmount.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fmount.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fmount.c [ 27%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fmpi.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fmpi.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fmpi.c [ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fquery.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fquery.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fquery.c [ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fsfile.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fsfile.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fsfile.c [ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fsuper.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Fsuper.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fsuper.c [ 28%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Fsuper_cache.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 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29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ftest.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ftest.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ftest.c [ 29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FD.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FD.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FD.c [ 29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDcore.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDcore.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDcore.c [ 29%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDdirect.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 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Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDfamily.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDfamily.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDfamily.c [ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDint.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDint.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDint.c [ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDlog.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDlog.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDlog.c [ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDmpi.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDmpi.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpi.c [ 30%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDmpio.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDmpio.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpio.c [ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDmulti.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDmulti.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmulti.c [ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDsec2.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDsec2.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDsec2.c [ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDspace.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDspace.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDspace.c [ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FDstdio.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FDstdio.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDstdio.c [ 31%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FS.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FS.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FS.c [ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FScache.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FScache.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FScache.c [ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FSdbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FSdbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSdbg.c [ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FSsection.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FSsection.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSsection.c [ 32%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FSstat.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FSstat.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSstat.c [ 33%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FStest.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FStest.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FStest.c [ 33%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5G.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5G.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5G.c [ 33%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gbtree2.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gbtree2.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gbtree2.c [ 33%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gcache.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gcache.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gcache.c [ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gcompact.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gcompact.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gcompact.c [ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gdense.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 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Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gdeprec.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gdeprec.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gdeprec.c [ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gent.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gent.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gent.c [ 34%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gint.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gint.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gint.c [ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Glink.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Glink.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Glink.c [ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gloc.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gloc.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gloc.c [ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gname.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gname.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gname.c [ 35%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gnode.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gnode.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gnode.c [ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gobj.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gobj.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gobj.c [ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Goh.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Goh.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Goh.c [ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Groot.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Groot.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Groot.c [ 36%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gstab.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gstab.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gstab.c [ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gtest.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gtest.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gtest.c [ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Gtraverse.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Gtraverse.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gtraverse.c [ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HF.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HF.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HF.c [ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFbtree2.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFbtree2.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFbtree2.c [ 37%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFcache.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 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Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFdbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFdbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFdbg.c [ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFdblock.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFdblock.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFdblock.c [ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFdtable.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFdtable.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFdtable.c [ 38%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFhdr.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFhdr.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFhdr.c [ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFhuge.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFhuge.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFhuge.c [ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFiblock.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFiblock.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFiblock.c [ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFiter.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFiter.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFiter.c [ 39%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFman.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFman.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFman.c [ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFsection.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFsection.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFsection.c [ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFspace.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFspace.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFspace.c [ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFstat.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFstat.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFstat.c [ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFtest.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFtest.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFtest.c [ 40%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HFtiny.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HFtiny.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFtiny.c [ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HG.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HG.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HG.c [ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HGcache.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HGcache.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGcache.c [ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HGdbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HGdbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGdbg.c [ 41%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HGquery.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HGquery.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGquery.c [ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HL.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HL.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HL.c [ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HLcache.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HLcache.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLcache.c [ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HLdbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HLdbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLdbg.c [ 42%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HLint.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HLint.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLint.c [ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MF.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MF.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MF.c [ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MFaggr.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MFaggr.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFaggr.c [ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MFsection.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 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Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MFdbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MFdbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFdbg.c [ 43%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MP.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MP.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MP.c [ 44%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MPtest.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MPtest.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPtest.c [ 44%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5O.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5O.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5O.c [ 44%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oainfo.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oainfo.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oainfo.c [ 44%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oalloc.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oalloc.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oalloc.c [ 45%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oattr.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oattr.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oattr.c [ 45%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oattribute.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 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Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Obogus.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Obogus.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Obogus.c [ 45%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Obtreek.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Obtreek.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Obtreek.c [ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ocache.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ocache.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ocache.c [ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ochunk.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 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Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ocont.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ocont.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ocont.c [ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ocopy.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ocopy.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ocopy.c [ 46%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Odbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Odbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odbg.c [ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Odrvinfo.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Odrvinfo.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odrvinfo.c [ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Odtype.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Odtype.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Odtype.c [ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oefl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oefl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oefl.c [ 47%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ofill.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ofill.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ofill.c [ 48%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oginfo.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oginfo.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oginfo.c [ 48%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Olayout.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Olayout.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Olayout.c [ 48%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Olinfo.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Olinfo.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Olinfo.c [ 48%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Olink.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Olink.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Olink.c [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Omessage.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Omessage.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Omessage.c [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Omtime.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Omtime.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Omtime.c [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oname.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oname.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oname.c [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Onull.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Onull.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Onull.c [ 49%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Opline.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Opline.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Opline.c [ 50%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Orefcount.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Orefcount.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Orefcount.c [ 50%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Osdspace.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Osdspace.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Osdspace.c [ 50%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oshared.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oshared.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oshared.c [ 50%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Oshmesg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Oshmesg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oshmesg.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ostab.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ostab.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ostab.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Otest.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Otest.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Otest.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ounknown.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ounknown.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ounknown.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5P.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5P.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5P.c [ 51%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pacpl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pacpl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pacpl.c [ 52%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pdapl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdapl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdapl.c [ 52%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pdcpl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdcpl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdcpl.c [ 52%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pdeprec.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdeprec.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdeprec.c [ 52%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pdxpl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pdxpl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pdxpl.c [ 53%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pfapl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pfapl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pfapl.c [ 53%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pfcpl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pfcpl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pfcpl.c [ 53%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pfmpl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pfmpl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pfmpl.c [ 53%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pgcpl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pgcpl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pgcpl.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pint.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pint.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pint.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Plapl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Plapl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Plapl.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Plcpl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Plcpl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Plcpl.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pocpl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pocpl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pocpl.c [ 54%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pocpypl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pocpypl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pocpypl.c [ 55%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Pstrcpl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Pstrcpl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pstrcpl.c [ 55%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ptest.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ptest.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ptest.c [ 55%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5PL.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5PL.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PL.c [ 55%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5R.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5R.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5R.c [ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Rdeprec.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Rdeprec.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rdeprec.c [ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5RC.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5RC.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RC.c [ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5RS.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5RS.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RS.c [ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5S.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5S.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5S.c [ 56%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Sdbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Sdbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sdbg.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Sall.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Sall.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sall.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Shyper.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Shyper.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Shyper.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Smpio.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Smpio.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Smpio.c [ 57%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Snone.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Snone.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Snone.c [ 58%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Spoint.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Spoint.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Spoint.c [ 58%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Sselect.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Sselect.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sselect.c [ 58%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Stest.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Stest.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Stest.c [ 58%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SM.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SM.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SM.c [ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMbtree2.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMbtree2.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMbtree2.c [ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMcache.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMcache.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMcache.c [ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMmessage.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMmessage.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMmessage.c [ 59%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SMtest.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SMtest.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMtest.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5T.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5T.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5T.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tarray.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tarray.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tarray.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tbit.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tbit.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tbit.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tcommit.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tcommit.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tcommit.c [ 60%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tcompound.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tcompound.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tcompound.c [ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tconv.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tconv.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tconv.c [ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tcset.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tcset.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tcset.c [ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tdbg.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tdbg.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tdbg.c [ 61%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tdeprec.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tdeprec.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tdeprec.c [ 62%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tenum.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tenum.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tenum.c [ 62%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tfields.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tfields.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tfields.c [ 62%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tfixed.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tfixed.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tfixed.c [ 62%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tfloat.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 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Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tnative.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tnative.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tnative.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Toffset.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Toffset.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Toffset.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Toh.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Toh.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Toh.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Topaque.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Topaque.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Topaque.c [ 63%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Torder.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Torder.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Torder.c [ 64%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tpad.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tpad.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpad.c [ 64%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tprecis.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tprecis.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tprecis.c [ 64%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tstrpad.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 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Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tvisit.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tvisit.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tvisit.c [ 65%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Tvlen.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Tvlen.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tvlen.c [ 65%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Z.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Z.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Z.c [ 65%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zdeflate.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -DH5_ZLIB_HEADER=\"zlib.h\" -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zdeflate.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zdeflate.c [ 65%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zfletcher32.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zfletcher32.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zfletcher32.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Znbit.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Znbit.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Znbit.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zscaleoffset.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zscaleoffset.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zscaleoffset.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zshuffle.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zshuffle.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zshuffle.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Zszip.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Zszip.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zszip.c [ 66%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Ztrans.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Ztrans.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ztrans.c [ 67%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5C.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5C.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5C.c [ 67%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5CS.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5CS.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5CS.c [ 67%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FL.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FL.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FL.c [ 67%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5FO.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5FO.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FO.c [ 68%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5HP.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5HP.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HP.c [ 68%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5I.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5I.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5I.c [ 68%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Itest.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Itest.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Itest.c [ 68%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5L.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5L.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5L.c [ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5Lexternal.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5Lexternal.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lexternal.c [ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5MM.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5MM.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MM.c [ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5SL.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5SL.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SL.c [ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5ST.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5ST.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ST.c [ 69%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5TS.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5.dir/H5TS.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5TS.c [ 70%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/H5VM.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations 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'/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= Scanning dependencies of target hdf5_tools make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 71%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff.c.o [ 71%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff_attr.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff.c cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff_attr.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff_attr.c [ 71%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff_array.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff_array.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff_array.c [ 71%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff_dset.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff_dset.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff_dset.c [ 72%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5diff_util.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5diff_util.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5diff_util.c Scanning dependencies of target gatbcore-static make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build [ 72%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools.c [ 72%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_dump.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_dump.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_dump.c make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 72%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/Bank.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 72%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_filters.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_filters.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_filters.c [ 73%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_ref.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_ref.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_ref.c [ 73%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_str.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_str.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_str.c [ 73%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_type.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_type.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_type.c [ 73%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5tools_utils.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5tools_utils.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5tools_utils.c [ 74%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/h5trav.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/h5trav.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/h5trav.c [ 74%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/io_timer.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIC -w -o CMakeFiles/hdf5_tools.dir/io_timer.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib/io_timer.c [ 74%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankAlbum.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 75%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankBinary.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 75%] Linking C static library ../../../../lib/None/libhdf5_tools.a cd 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CMakeFiles/hdf5_tools.dir/io_timer.c.o /usr/bin/ranlib ../../../../lib/None/libhdf5_tools.a make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 75%] Built target hdf5_tools [ 75%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 75%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankFasta.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 75%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankHelpers.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankRandom.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bank/impl/BankSplitter.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 76%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/depend make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/DependInfo.cmake --color= Scanning dependencies of target gatb-h5dump make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 76%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/h5dump.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/gatb-h5dump.dir/h5dump.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump/h5dump.c [ 77%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/h5dump_ddl.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/gatb-h5dump.dir/h5dump_ddl.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump/h5dump_ddl.c [ 78%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/logging.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 78%] Building C object bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/h5dump_xml.c.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5 -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/lib/kissplice -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -fPIE -w -o CMakeFiles/gatb-h5dump.dir/h5dump_xml.c.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump/h5dump_xml.c [ 78%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 78%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 78%] Linking C executable ../../../../../../../lib/kissplice/gatb-h5dump cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatb-h5dump.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c99 -fstdarg-opt -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -fmessage-length=0 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/gatb-h5dump.dir/h5dump.c.o CMakeFiles/gatb-h5dump.dir/h5dump_ddl.c.o CMakeFiles/gatb-h5dump.dir/h5dump_xml.c.o -o ../../../../../../../lib/kissplice/gatb-h5dump ../../../../lib/None/libhdf5_tools.a ../../../../lib/None/libhdf5.a -lm -ldl -lz -ldl -lz make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 78%] Built target gatb-h5dump [ 78%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Frontline.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 78%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 79%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 79%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 79%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 79%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 80%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Terminator.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 80%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Traversal.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 80%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 80%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 81%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 82%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 82%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 82%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 82%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/ModelData.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ 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bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 83%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 84%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 84%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 84%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 84%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/System.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 84%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 85%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/ThreadLinux.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 85%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/ThreadMacos.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 85%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/ThreadLinux.cpp: In constructor ‘gatb::core::system::impl::ThreadLinux::ThreadLinux(void* (*)(void*), void*)’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/system/impl/ThreadLinux.cpp:51:7: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 51 | int ret = pthread_attr_init ( &tattr ) ; | ^~~ [ 85%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 86%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 86%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt8’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: ‘class gatb::core::tools::math::NativeInt8’ declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt8’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: ‘class gatb::core::tools::math::NativeInt8’ declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:71, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt8’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: ‘class gatb::core::tools::math::NativeInt8’ declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:48, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt64’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/LargeInt.hpp:42, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/collections/impl/Bloom.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/gatb_core.hpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: ‘class gatb::core::tools::math::NativeInt64’ declared here 48 | class NativeInt64 | ^~~~~~~~~~~ [ 86%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/compression/RangeCoder.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 86%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 87%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 87%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/api/Data.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 87%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 87%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 87%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 88%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Progress.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 88%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Property.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 88%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 88%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 89%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Tool.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 89%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 89%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 89%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt8’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: ‘class gatb::core::tools::math::NativeInt8’ declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ [ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 128]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:13:17: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 32]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:13:17: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 64]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:13:17: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ [ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 96]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:13:17: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ [ 90%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:3: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of ‘void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 128]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:31:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable ‘debug_index’ [-Wunused-variable] 236 | uint debug_index = 0; | ^~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:3: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of ‘void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 32]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:31:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable ‘debug_index’ [-Wunused-variable] 236 | uint debug_index = 0; | ^~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of ‘void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 128]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:29:9: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable ‘first_index’ [-Wunused-variable] 258 | uint32_t first_index = markedSequence_index; | ^~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of ‘void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 32]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:29:9: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable ‘first_index’ [-Wunused-variable] 258 | uint32_t first_index = markedSequence_index; | ^~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:3: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of ‘void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 64]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:31:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable ‘debug_index’ [-Wunused-variable] 236 | uint debug_index = 0; | ^~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of ‘void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 64]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:29:9: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable ‘first_index’ [-Wunused-variable] 258 | uint32_t first_index = markedSequence_index; | ^~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<32>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<32>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<32>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:3: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of ‘void gatb::core::debruijn::impl::graph3::debruijn() [with long unsigned int span = 96]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:31:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable ‘debug_index’ [-Wunused-variable] 236 | uint debug_index = 0; | ^~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of ‘void gatb::core::debruijn::impl::determine_order_sequences(std::vector >&, const std::vector >&, int, bool) [with int SPAN = 96]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with long unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:29:9: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable ‘first_index’ [-Wunused-variable] 258 | uint32_t first_index = markedSequence_index; | ^~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/ograph.h:15, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 91%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:6: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 128]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:14:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 128]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 128]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:14:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 239 | while(filenames.size() > _reduceTarget) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 265 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 335 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:6: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 32]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 32]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 32]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 239 | while(filenames.size() > _reduceTarget) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 265 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 335 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 128]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:117:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 117 | for(int ii=0; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:120:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 120 | for(int jj=0; jj<= _histogram->getLength2(); jj++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for(int ii=1; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 128]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1057:20: required from ‘void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 128; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<128>::SuperKmer]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1048:8: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt64’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/LargeInt.hpp:42, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/Integer.hpp:29, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: ‘class gatb::core::tools::math::NativeInt64’ declared here 48 | class NativeInt64 | ^~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 32]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:117:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 117 | for(int ii=0; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:120:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 120 | for(int jj=0; jj<= _histogram->getLength2(); jj++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for(int ii=1; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 32]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1057:20: required from ‘void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 32; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<>::SuperKmer]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1048:8: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt64’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/LargeInt.hpp:42, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/Integer.hpp:29, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: ‘class gatb::core::tools::math::NativeInt64’ declared here 48 | class NativeInt64 | ^~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:6: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 64]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:14:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 64]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 64]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:14:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 239 | while(filenames.size() > _reduceTarget) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 265 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 335 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 64]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:117:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 117 | for(int ii=0; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:120:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 120 | for(int jj=0; jj<= _histogram->getLength2(); jj++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for(int ii=1; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 64]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1057:20: required from ‘void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 64; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<64>::SuperKmer]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1048:8: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt64’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/LargeInt.hpp:42, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/Integer.hpp:29, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: ‘class gatb::core::tools::math::NativeInt64’ declared here 48 | class NativeInt64 | ^~~~~~~~~~~ [ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:6: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 96]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:14:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 96]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:54: required from ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 96]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:14:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 239 | while(filenames.size() > _reduceTarget) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 265 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, short unsigned int> >*, std::allocator, short unsigned int> >*> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 335 | for(int ii=0; ii< _tmpCountIterators.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(int ii=0; ii< currentFiles.size(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of ‘void gatb::core::kmer::impl::CountProcessorHistogram::end() [with long unsigned int span = 96]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:117:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 117 | for(int ii=0; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:120:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 120 | for(int jj=0; jj<= _histogram->getLength2(); jj++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for(int ii=1; ii<= _histogram->getLength(); ii++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 96]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1057:20: required from ‘void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 96; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<96>::SuperKmer]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1048:8: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1442 | while(uid<4 && skid < superKmerLen) | ~~~~~^~~~~~~~~~~~~~ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1460 | if(skid >= superKmerLen) break; | ~~~~~^~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt64]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt64’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/LargeInt.hpp:42, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/Integer.hpp:29, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: ‘class gatb::core::tools::math::NativeInt64’ declared here 48 | class NativeInt64 | ^~~~~~~~~~~ [ 92%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt8’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: ‘class gatb::core::tools::math::NativeInt8’ declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt8’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: ‘class gatb::core::tools::math::NativeInt8’ declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt8’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: ‘class gatb::core::tools::math::NativeInt8’ declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ [ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::tools::math::NativeInt8]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class gatb::core::tools::math::NativeInt8’; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:33, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: ‘class gatb::core::tools::math::NativeInt8’ declared here 44 | class NativeInt8 : private misc::ArrayData | ^~~~~~~~~~ [ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 93%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of ‘void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 128; Abundance_t = unsigned char; NodeState_t = unsigned char]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:13:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable ‘abundance’ [-Wunused-variable] 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; | ^~~~~~~~~ [ 94%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of ‘void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 32; Abundance_t = unsigned char; NodeState_t = unsigned char]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:13:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable ‘abundance’ [-Wunused-variable] 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; | ^~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of ‘void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 64; Abundance_t = unsigned char; NodeState_t = unsigned char]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:13:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable ‘abundance’ [-Wunused-variable] 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; | ^~~~~~~~~ [ 94%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 94%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of ‘void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 96; Abundance_t = unsigned char; NodeState_t = unsigned char]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:13:16: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:311:21: warning: unused variable ‘abundance’ [-Wunused-variable] 311 | Abundance_t abundance = (*_abundanceMap)[count.value]; | ^~~~~~~~~ [ 94%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 95%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 96%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<128>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<96>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<64>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:43, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of ‘gatb::core::tools::storage::impl::HDF5IteratorPatch::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = long unsigned int]’: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from ‘gatb::core::tools::dp::Iterator* gatb::core::tools::storage::impl::IterableHDF5Patch::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct gatb::core::kmer::impl::Kmer<>::Count’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 436 | memset (_data, 0, _blockSize*sizeof(Item)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: ‘struct gatb::core::kmer::impl::Kmer<>::Count’ declared here 1568 | struct Count : tools::misc::Abundance | ^~~~~ [ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 97%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -msse2 -msse4.2 -mpopcnt -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-format -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] [ 98%] Building CXX object bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd 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&& /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/CMakeFiles/bcalm.dir/DependInfo.cmake --color= Scanning dependencies of target bcalm make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/CMakeFiles/bcalm.dir/build.make bcalm/CMakeFiles/bcalm.dir/build make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [100%] Building CXX object bcalm/CMakeFiles/bcalm.dir/src/bcalm_1.cpp.o cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include 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cc1plus: warning: ‘-Wformat-security’ ignored without ‘-Wformat’ [-Wformat-security] cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm && /usr/bin/c++ -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src -I/build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src -g -O2 -fdebug-prefix-map=/build/kissplice-GuCwjZ/kissplice-2.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses -Wno-error=format-security -std=c++11 -O3 -DNDEBUG 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'/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [100%] Built target bcalm make[2]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' dh_auto_test -a cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 make[1]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j4 Test project /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu Start 1: KisspliceBasicTest Start 2: KisspliceDBGTest Start 3: KisspliceTwoSequencesTest Start 4: KisspliceGraphAndSequenceTest 1/8 Test #1: KisspliceBasicTest ............... Passed 0.55 sec Start 5: KisspliceGraphTest 2/8 Test #5: KisspliceGraphTest ............... Passed 7.53 sec Start 6: ksBubbleEnumerationTest 3/8 Test #6: ksBubbleEnumerationTest .......... Passed 0.39 sec Start 7: ksRunModulesTest 4/8 Test #7: ksRunModulesTest ................. Passed 0.68 sec Start 8: ksErrorRemovalTest 5/8 Test #8: ksErrorRemovalTest ............... Passed 0.39 sec 6/8 Test #4: KisspliceGraphAndSequenceTest .... Passed 11.49 sec 7/8 Test #2: KisspliceDBGTest ................. Passed 27.70 sec 8/8 Test #3: KisspliceTwoSequencesTest ........ Passed 29.50 sec 100% tests passed, 0 tests failed out of 8 Total Test time (real) = 29.50 sec make[1]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3' touch bcalm/README.md dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/kissplice-GuCwjZ/kissplice-2.5.3 -B/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/CMakeFiles /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/depend make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/depend make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/depend make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/depend make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/hdf5_postbuild.dir/build make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5make_libsettings.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/H5detect.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build.make bcalm/ext/gatb-core/thirdparty/CMakeFiles/thirdparty_copy.dir/build make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/json [ 0%] Built target H5detect cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake --color= cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF [ 0%] Built target H5make_libsettings make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/thirdparty/kissreads/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake --color= cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/BooPHF/BooPHF.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/BooPHF/ make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 3%] Built target ks_kissreadsSNPS cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5ACpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/depend [ 5%] Built target ks_kissreadsSplice make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake --color= cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/json/json.hpp /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/json/ cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake --color= cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/build make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/CMakeFiles/ks_bubble_enumeration.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/build make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/CMakeFiles/ks_clean_duplicates.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 7%] Built target ks_bubble_enumeration make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Aprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 10%] Built target ks_clean_duplicates make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake --color= make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend [ 10%] Built target thirdparty_copy make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color= make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Apublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2pkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color= make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/build make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/CMakeFiles/ks_run_modules.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/build cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2private.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/CMakeFiles/ks_error_removal.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/build make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/CMakeFiles/ks_print_bcc.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5B2public.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 13%] Built target ks_run_modules make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/depend [ 14%] Built target ks_error_removal [ 15%] Built target ks_print_bcc cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Bpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5CSprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/DependInfo.cmake --color= cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Cpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Edefin.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Einit.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 71%] Built target hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/depend make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/lib /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/DependInfo.cmake --color= cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epubgen.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Epublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/tools/lib/CMakeFiles/hdf5_tools.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Eterm.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 74%] Built target hdf5_tools make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/depend make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/tools/h5dump /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/DependInfo.cmake --color= cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDcore.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build.make bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/thirdparty/hdf5/tools/h5dump/CMakeFiles/gatb-h5dump.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDdirect.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 [ 75%] Built target gatb-h5dump cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDfamily.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDlog.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpi.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmpio.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDmulti.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDsec2.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDstdio.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FDwindows.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FLprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FOprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5FSpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Fpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Gpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HFpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HGpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HLpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5HPprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ipkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Iprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ipublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Lpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MFprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MMprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MMpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5MPprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Opkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Opublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oshared.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLextern.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5PLpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ppkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Pprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Ppublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RCprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5RSprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Rpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SLprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5SMprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5STprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Spkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Sprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Spublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5TSprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Tpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5VMprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5WBprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zpkg.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zprivate.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zpublic.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5api_adpt.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5overflow.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5private.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5public.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5version.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5win32defs.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/hdf5.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/thirdparty/hdf5/H5pubconf.h /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5 make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 75%] Built target hdf5_postbuild make -f bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm/gatb-core/gatb-core/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'bcalm/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [ 99%] Built target gatbcore-static make -f bcalm/CMakeFiles/bcalm.dir/build.make bcalm/CMakeFiles/bcalm.dir/depend make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' cd /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/kissplice-GuCwjZ/kissplice-2.5.3 /build/kissplice-GuCwjZ/kissplice-2.5.3/bcalm /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/CMakeFiles/bcalm.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make -f bcalm/CMakeFiles/bcalm.dir/build.make bcalm/CMakeFiles/bcalm.dir/build make[4]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'bcalm/CMakeFiles/bcalm.dir/build'. make[4]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' [100%] Built target bcalm make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/bin/kissplice -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/bcalm -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5pubconf.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/lib/libhdf5.settings -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/hdf5.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5api_adpt.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5public.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5version.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5overflow.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Apkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Apublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5ACpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5ACpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5B2pkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5B2public.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Bpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Bpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Dpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Dpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Edefin.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Einit.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Epkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Epubgen.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Epublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Eterm.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Fpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Fpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDcore.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDdirect.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDfamily.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDlog.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDmpi.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDmpio.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDmulti.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDsec2.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FDstdio.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FSpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5FSpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Gpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Gpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5HFpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5HFpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5HGpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5HGpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5HLpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5HLpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5MPpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Opkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Opublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Oshared.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Ppkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Ppublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5PLextern.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5PLpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Rpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Rpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Spkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Spublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5SMpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Tpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Tpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Zpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Zpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Cpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Cpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Ipkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Ipublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Lpkg.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Lpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5MMpublic.h -- Up-to-date: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Rpkg.h -- Up-to-date: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/H5Rpublic.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5trav.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5tools.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5tools_dump.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5tools_utils.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5tools_str.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5tools_ref.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu/bcalm/ext/gatb-core/include/None/hdf5/h5diff.h -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/bin/gatb-h5dump -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_kissreadsSNPS -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_kissreadsSplice -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_clean_duplicates -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_bubble_enumeration -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_run_modules -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_error_removal -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/lib/kissplice/ks_print_bcc -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/share/man/man1/kissplice.1 -- Installing: /build/kissplice-GuCwjZ/kissplice-2.5.3/debian/kissplice/usr/share/doc/kissplice/user_guide.pdf make[2]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3' debian/rules override_dh_install make[1]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3' rm -rf debian/kissplice/usr/README.md debian/kissplice/build debian/kissplice/builds mkdir -p debian/kissplice/usr/share/kissplice mv debian/kissplice/usr/bin/kissplice debian/kissplice/usr/share/kissplice/kissplice.py make[1]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3' debian/rules override_dh_installdocs make[1]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3' dh_installdocs make[1]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3' dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_python3 -a I: dh_python3 tools:114: replacing shebang in debian/kissplice/usr/share/kissplice/kissplice.py dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/kissplice-GuCwjZ/kissplice-2.5.3' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/kissplice-GuCwjZ/kissplice-2.5.3' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'kissplice' in '../kissplice_2.5.3-3+b1_amd64.deb'. dpkg-deb: building package 'kissplice-dbgsym' in '../kissplice-dbgsym_2.5.3-3+b1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../kissplice_2.5.3-3+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/kissplice-GuCwjZ /tmp/kissplice-2.5.3-3+b13wlomak7 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.BxxFhATivP... I: success in 8206.5089 seconds md5: Value of 'md5' differs for kissplice-dbgsym_2.5.3-3+b1_amd64.deb md5: Size differs for kissplice-dbgsym_2.5.3-3+b1_amd64.deb md5: Value of 'md5' differs for kissplice_2.5.3-3+b1_amd64.deb md5: Size differs for kissplice_2.5.3-3+b1_amd64.deb sha1: Value of 'sha1' differs for kissplice-dbgsym_2.5.3-3+b1_amd64.deb sha1: Size differs for kissplice-dbgsym_2.5.3-3+b1_amd64.deb sha1: Value of 'sha1' differs for kissplice_2.5.3-3+b1_amd64.deb sha1: Size differs for kissplice_2.5.3-3+b1_amd64.deb sha256: Value of 'sha256' differs for kissplice-dbgsym_2.5.3-3+b1_amd64.deb sha256: Size differs for kissplice-dbgsym_2.5.3-3+b1_amd64.deb sha256: Value of 'sha256' differs for kissplice_2.5.3-3+b1_amd64.deb sha256: Size differs for kissplice_2.5.3-3+b1_amd64.deb Checksums: FAIL Cannot generate diffoscope for kissplice-dbgsym_2.5.3-3+b1_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/09d1db18262a750067844e49dd0343bfda9d66fd46b655c360b91fa7858baae6/download diffoscope run passed