Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/k/kineticstools/kineticstools_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/kineticstools-0.6.1+git20200729.e3723e0+dfsg-1+b1mgfri4u_/kineticstools_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.buildinfo Get source package info: kineticstools=0.6.1+git20200729.e3723e0+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/kineticstools/0.6.1+git20200729.e3723e0+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 binutils=2.35.1-4 binutils-common=2.35.1-4 binutils-x86-64-linux-gnu=2.35.1-4 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-23 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.3 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 docutils-common=0.16+dfsg-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.0-23 gcc=4:10.2.0-1 gcc-10=10.2.0-23 gcc-10-base=10.2.0-23 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libaec0=1.0.4-1 libarchive-zip-perl=1.68-1 libasan6=10.2.0-23 libatomic1=10.2.0-23 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-4 libblas3=3.9.0-3 libblkid1=2.36.1-2 libbrotli1=1.0.9-2+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-5 libc-dev-bin=2.31-5 libc6=2.31-5 libc6-dev=2.31-5 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.0-23 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-4 libctf0=2.35.1-4 libcurl3-gnutls=7.72.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.3 libdeflate0=1.6-1 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libfreetype6=2.10.2+dfsg-4 libgcc-10-dev=10.2.0-23 libgcc-s1=10.2.0-23 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran5=10.2.0-23 libglib2.0-0=2.66.3-2 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.6.15-4 libgomp1=10.2.0-23 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libhdf5-103-1=1.10.6+repack-2 libhdf5-hl-100=1.10.6+repack-2 libhogweed6=3.6-2 libhts3=1.11-2 libicu67=67.1-4 libidn2-0=2.3.0-4 libimagequant0=2.12.2-1.1 libisl23=0.23-1 libitm1=10.2.0-23 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.5-1.1 libjs-jquery=3.5.1+dfsg+~3.5.4-3 libjs-sphinxdoc=3.3.1-1 libjs-underscore=1.9.1~dfsg-1 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 liblbfgsb0=3.0+dfsg.3-9 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.56+dfsg-1 liblsan0=10.2.0-23 liblz4-1=1.9.2-2 liblzf1=3.6-3 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-1 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.35-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libpsl5=0.21.0-1.1 libpython3-stdlib=3.9.0-4 libpython3.8-minimal=3.8.6-1 libpython3.8-stdlib=3.8.6-1 libpython3.9-minimal=3.9.1~rc1-2 libpython3.9-stdlib=3.9.1~rc1-2 libquadmath0=10.2.0-23 libreadline8=8.1~rc3-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsigsegv2=2.12-2 libsmartcols1=2.36.1-2 libsqlite3-0=3.34.0-1 libssh2-1=1.9.0-1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-23 libstdc++6=10.2.0-23 libsub-override-perl=0.09-2 libsystemd0=247.1-3 libsz2=1.0.4-1 libtasn1-6=4.16.0-2 libtiff5=4.1.0+git191117-2 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-23 libubsan1=10.2.0-23 libuchardet0=0.0.7-1 libudev1=247.1-3 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libxau6=1:1.0.8-1+b2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxml2=2.9.10+dfsg-6.3 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 node-jquery=3.5.1+dfsg+~3.5.4-3 openssl=1.1.1h-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 po-debconf=1.0.21 python3=3.9.0-4 python3-all=3.9.0-4 python3-apipkg=1.5-5 python3-atomicwrites=1.4.0-1 python3-attr=20.3.0-1 python3-avro=1.10.0+dfsg-1 python3-biopython=1.78+dfsg-4 python3-certifi=2020.6.20-1 python3-chardet=3.0.4-7 python3-decorator=4.4.2-2 python3-distutils=3.8.6-1 python3-docutils=0.16+dfsg-3 python3-execnet=1.7.1-3 python3-h5py=2.10.0-9 python3-h5py-serial=2.10.0-9+b1 python3-idna=2.10-1 python3-importlib-metadata=1.6.0-2 python3-iso8601=0.1.12-2 python3-lib2to3=3.8.6-1 python3-minimal=3.9.0-4 python3-more-itertools=4.2.0-3 python3-numpy=1:1.19.4-1 python3-packaging=20.4-1 python3-pbcommand=1.1.1+git20200506.d345551-1 python3-pbcore=1.7.1+git20200430.a127b1e+dfsg-1 python3-pil=8.0.1-1 python3-pkg-resources=50.3.0-1 python3-pluggy=0.13.0-5 python3-py=1.9.0-2 python3-pyparsing=2.4.7-1 python3-pysam=0.15.4+ds-3+b1 python3-pytest=4.6.11-1 python3-pytest-forked=1.3.0-1 python3-pytest-runner=2.11.1-1.2 python3-pytest-xdist=1.32.0-2 python3-reportlab=3.5.55-1 python3-reportlab-accel=3.5.55-1 python3-requests=2.24.0+dfsg-1 python3-roman=2.0.0-5 python3-scipy=1.5.4-1 python3-setuptools=50.3.0-1 python3-six=1.15.0-2 python3-tz=2020.4-2 python3-uritools=3.0.0-2 python3-urllib3=1.25.11-1 python3-wcwidth=0.1.9+dfsg1-2 python3-zipp=1.0.0-3 python3.8=3.8.6-1 python3.8-minimal=3.8.6-1 python3.9=3.9.1~rc1-2 python3.9-minimal=3.9.1~rc1-2 readline-common=8.1~rc3-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sgml-base=1.30 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020d-1 util-linux=2.36.1-2 xml-core=0.18+nmu1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201207T085039Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d kineticstools=0.6.1+git20200729.e3723e0+dfsg-1 && mkdir -p /build/kineticstools-BJ5qJG && dpkg-source --no-check -x /*.dsc /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg && cd /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg && { printf '%s' 'kineticstools (0.6.1+git20200729.e3723e0+dfsg-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.9 only -- amd64 / i386 Build Daemon (x86-csail-01) Mon, 07 Dec 2020 07:43:20 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/kineticstools-BJ5qJG" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607327000" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/kineticstools-BJ5qJG /tmp/kineticstools-0.6.1+git20200729.e3723e0+dfsg-1+b1mgfri4u_ bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201207T085039Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.lrpHi3zWUK as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.lrpHi3zWUK Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201207T085039Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201207T085039Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (914 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4614 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201207T085039Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.lrpHi3zWUK Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201207T085039Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 19s (1175 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.lrpHi3zWUK I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d kineticstools=0.6.1+git20200729.e3723e0+dfsg-1 && mkdir -p /build/kineticstools-BJ5qJG && dpkg-source --no-check -x /*.dsc /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg && cd /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg && { printf '%s' 'kineticstools (0.6.1+git20200729.e3723e0+dfsg-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.9 only -- amd64 / i386 Build Daemon (x86-csail-01) Mon, 07 Dec 2020 07:43:20 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/kineticstools-BJ5qJG"' exec /tmp/mmdebstrap.lrpHi3zWUK Reading package lists... NOTICE: 'kineticstools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kineticstools.git Please use: git clone https://salsa.debian.org/med-team/kineticstools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 21.8 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main kineticstools 0.6.1+git20200729.e3723e0+dfsg-1 (dsc) [2715 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main kineticstools 0.6.1+git20200729.e3723e0+dfsg-1 (tar) [21.8 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main kineticstools 0.6.1+git20200729.e3723e0+dfsg-1 (diff) [10.4 kB] Fetched 21.8 MB in 18s (1197 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting kineticstools in /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg dpkg-source: info: unpacking kineticstools_0.6.1+git20200729.e3723e0+dfsg.orig.tar.xz dpkg-source: info: unpacking kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying man-pages.patch dpkg-source: info: applying tests-import.patch dpkg-source: info: applying verbose-testing.patch dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying tests2to3.patch dpkg-source: info: applying man-align-cols.patch dpkg-source: info: applying specify-link-args.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607327000" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.lrpHi3zWUK dpkg-buildpackage: info: source package kineticstools dpkg-buildpackage: info: source version 0.6.1+git20200729.e3723e0+dfsg-1+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-csail-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pytest_cache rm -rf kineticsTools.egg-info rm -f nosetests.xml rm -f bin/ipdSummary make[1]: Leaving directory '/build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ReferenceUtils.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteDetection.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteCommon.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ipdModel.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/__init__.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/BasicLdaEnricher.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/summarizeModifications.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/MedakaLdaEnricher.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/KineticWorker.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/loader.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ResultWriter.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/PositiveControlEnricher.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ModificationDecode.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ipdSummary.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/pipelineTools.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/sharedArray.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/WorkerProcess.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/MixtureEstimationMethods.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/internal copying kineticsTools/internal/__init__.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/internal creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/__init__.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/gather_bigwig.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks running egg_info creating kineticsTools.egg-info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt writing manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/P6-C4.npz.gz -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP2-C2.npz.gz -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP3-C3.npz.gz -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/unknown.npz.gz -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources running build_ext building 'kineticsTools/tree_predict' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/kineticsTools x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c kineticsTools/tree_predict.c -o build/temp.linux-x86_64-3.9/kineticsTools/tree_predict.o -O3 -shared -std=c99 x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/kineticsTools/tree_predict.o -o /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tree_predict.cpython-39-x86_64-linux-gnu.so -lc debian/rules override_dh_auto_test make[1]: Entering directory '/build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg' cp kineticsTools/ipdSummary.py bin/ipdSummary chmod +x bin/ipdSummary PYTHONPATH=/build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg PATH=$PATH:/build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/bin dh_auto_test I: pybuild base:232: cd /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build; python3.9 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.9.1rc1, pytest-4.6.11, py-1.9.0, pluggy-0.13.0 -- /usr/bin/python3.9 cachedir: .pytest_cache rootdir: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg, inifile: pytest.ini plugins: forked-1.3.0, xdist-1.32.0 gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I / gw8 I / gw9 I / gw10 I / gw11 I / gw12 I / gw13 I / gw14 I / gw15 I / gw16 I / gw17 I / gw18 I / gw19 I / gw20 I / gw21 I / gw22 I / gw23 I / gw24 I / gw25 I / gw26 I / gw27 I / gw28 I / gw29 I / gw30 I / gw31 I [gw0] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw1] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw2] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw3] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw4] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw5] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw6] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw7] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw8] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw9] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw10] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw11] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw12] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw13] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw14] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw15] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw16] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw17] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw18] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw19] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw20] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw21] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw22] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw23] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw24] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw25] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw26] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw27] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw28] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw29] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw30] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw31] linux Python 3.9.1 cwd: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw0] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw1] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw2] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw3] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw4] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw5] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw6] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw7] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw8] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw9] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw10] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw11] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw13] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw12] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw14] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw15] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw16] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw17] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw18] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw19] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw20] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw21] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw22] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw23] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw24] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw25] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw26] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw27] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw28] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw29] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw30] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] [gw31] Python 3.9.1rc1 (default, Nov 27 2020, 19:38:39) -- [GCC 10.2.0] gw0 [19] / gw1 [19] / gw2 [19] / gw3 [19] / gw4 [19] / gw5 [19] / gw6 [19] / gw7 [19] / gw8 [19] / gw9 [19] / gw10 [19] / gw11 [19] / gw12 [19] / gw13 [19] / gw14 [19] / gw15 [19] / gw16 [19] / gw17 [19] / gw18 [19] / gw19 [19] / gw20 [19] / gw21 [19] / gw22 [19] / gw23 [19] / gw24 [19] / gw25 [19] / gw26 [19] / gw27 [19] / gw28 [19] / gw29 [19] / gw30 [19] / gw31 [19] scheduling tests via LoadScopeScheduling test/test_ReferenceUtils.py::TestReferenceUtils::test_bam [gw0] [ 5%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset [gw0] [ 10%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow test/test_ipdModel.py::TestIpdModel::test_refLength [gw3] [ 15%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength test/test_ipdModel.py::TestIpdModel::test_snippetFunc test/test_integration.py::TestKineticsTools::test_help [gw0] [ 21%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow test/test_loader.py::test_basic [gw4] [ 26%] PASSED test/test_loader.py::test_basic test/test_loader.py::test_path [gw4] [ 31%] PASSED test/test_loader.py::test_path test/test_loader.py::test_path_with_prefixed_chem [gw4] [ 36%] PASSED test/test_loader.py::test_path_with_prefixed_chem test/test_summarize_modifications.py::TestSummarizeModifications::test_integration [gw6] [ 42%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig [gw1] [ 47%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli [gw1] [ 52%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli test/test_loader.py::test_getResourcePathSpec test/test_outputs.py::TestOutputs::test_csv_output [gw5] [ 57%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output test/test_outputs.py::TestOutputs::test_bigwig [gw5] [ 63%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig [gw3] [ 68%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow [gw3] [ 73%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows [gw4] [ 78%] PASSED test/test_loader.py::test_getResourcePathSpec [gw0] [ 84%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks [gw0] [ 89%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks [gw2] [ 94%] PASSED test/test_integration.py::TestKineticsTools::test_help test/test_integration.py::TestKineticsTools::test_ecoli_first_50k [gw2] [100%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k =============================== warnings summary =============================== /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 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/usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249 /usr/lib/python3/dist-packages/avro/schema.py:1249: DeprecationWarning: `Parse` is deprecated in avro 1.10. Please use `parse` (lowercase) instead. warnings.warn("`Parse` is deprecated in avro 1.10. " -- Docs: https://docs.pytest.org/en/latest/warnings.html - generated xml file: /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/nosetests.xml - ========================== slowest 20 test durations =========================== 1.61s call .pybuild/cpython3_3.9_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help 0.08s teardown .pybuild/cpython3_3.9_kineticstools/build/test/test_outputs.py::TestOutputs::test_bigwig 0.08s teardown .pybuild/cpython3_3.9_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli 0.01s setup .pybuild/cpython3_3.9_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli (0.00 durations hidden. Use -vv to show these durations.) ============= 5 passed, 14 skipped, 160 warnings in 62.76 seconds ============== make[1]: Leaving directory '/build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg' dh_auto_install I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools running install running build running build_py running egg_info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9 creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/nosetests.xml -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/internal copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/internal/__init__.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/internal copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ReferenceUtils.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ipdModel.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tree_predict.cpython-39-x86_64-linux-gnu.so -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__init__.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/summarizeModifications.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/KineticWorker.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks/__init__.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/__pycache__ copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-39.pyc -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/__pycache__ copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-39.pyc -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/__pycache__ copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/loader.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ResultWriter.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ModificationDecode.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ipdSummary.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/pipelineTools.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools creating /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-39.pyc -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/loader.cpython-39.pyc -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-39.pyc -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-39.pyc -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-39.pyc -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/sharedArray.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/WorkerProcess.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__init__.py to __init__.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/loader.py to loader.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-39.pyc byte-compiling /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-39.pyc running install_egg_info Copying kineticsTools.egg-info to /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools-0.7.0.egg-info Skipping SOURCES.txt running install_scripts Installing ipdSummary script to /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/bin Installing summarizeModifications script to /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/bin mkdir -p /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools/usr/bin mv debian/python3-kineticstools/usr/bin/* /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools/usr/bin mkdir -p /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools/usr/share/man//man1 rst2man doc/manual.rst > /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools/usr/share/man//man1/ipdSummary.1 doc/manual.rst:53: (WARNING/2) "math" role not supported doc/manual.rst:55: (WARNING/2) "math" role not supported doc/manual.rst:55: (WARNING/2) "math" role not supported mkdir -p debian/kineticstools-data/usr/share/kineticstools # There is probably a simpler way, but that should do for the moment. set -e \ ; for libdir in debian/python3-kineticstools/usr/lib/python3.* \ ; do rm -rf /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; mv ${libdir}/dist-packages/kineticsTools/resources /build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; done rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml make[1]: Leaving directory '/build/kineticstools-BJ5qJG/kineticstools-0.6.1+git20200729.e3723e0+dfsg' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild dh_strip -a -a -O--buildsystem=pybuild dh_makeshlibs -a -a -O--buildsystem=pybuild dh_shlibdeps -a -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-kineticstools' in '../python3-kineticstools_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.deb'. dpkg-deb: building package 'python3-kineticstools-dbgsym' in '../python3-kineticstools-dbgsym_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../kineticstools_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/kineticstools-BJ5qJG /tmp/kineticstools-0.6.1+git20200729.e3723e0+dfsg-1+b1mgfri4u_ I: cleaning package lists and apt cache... W: deleting files in /tmp: tmpyhw1sg_y W: deleting files in /tmp: pytest-of-builduser I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.lrpHi3zWUK... I: success in 641.1579 seconds md5: python3-kineticstools-dbgsym_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.deb: OK md5: python3-kineticstools_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.deb: OK sha1: python3-kineticstools-dbgsym_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.deb: OK sha1: python3-kineticstools_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.deb: OK sha256: python3-kineticstools-dbgsym_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.deb: OK sha256: python3-kineticstools_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.deb: OK Checksums: OK