Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/j/jmodeltest/jmodeltest_2.1.10+dfsg-10_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/jmodeltest-2.1.10+dfsg-10mcma7uv0/jmodeltest_2.1.10+dfsg-10_all.buildinfo Get source package info: jmodeltest=2.1.10+dfsg-10 Source URL: http://snapshot.notset.fr/mr/package/jmodeltest/2.1.10+dfsg-10/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 alter-sequence-alignment=1.3.4-4 ant=1.10.9-1 autoconf=2.69-13 automake=1:1.16.3-1 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-1 binutils=2.35.1-5 binutils-common=2.35.1-5 binutils-x86-64-linux-gnu=2.35.1-5 bsdextrautils=2.36.1-3 bsdutils=1:2.36.1-3 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 ca-certificates-java=20190909 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.1-1 dash=0.5.11+git20200708+dd9ef66-5 dctrl-tools=2.24-3+b1 debconf=1.5.74 debhelper=13.3 debianutils=4.11.2 default-jdk=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 devscripts=2.20.5 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dirmngr=2.2.20-1 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 fakeroot=1.25.3-1.1 file=1:5.39-3 findutils=4.7.0+git20201010-2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-lmodern=2.004.5-6 g++=4:10.2.0-1 g++-10=10.2.1-1 gcc=4:10.2.0-1 gcc-10=10.2.1-1 gcc-10-base=10.2.1-1 gettext=0.21-3 gettext-base=0.21-3 gnupg=2.2.20-1 gnupg-l10n=2.2.20-1 gnupg-utils=2.2.20-1 gpg=2.2.20-1 gpg-agent=2.2.20-1 gpg-wks-client=2.2.20-1 gpg-wks-server=2.2.20-1 gpgconf=2.2.20-1 gpgsm=2.2.20-1 gpgv=2.2.20-1 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 ibverbs-providers=32.0-1+b1 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 java-common=0.72 java-wrappers=0.3 javahelper=0.77 libacl1=2.2.53-8 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libasan6=10.2.1-1 libasound2=1.2.4-1 libasound2-data=1.2.4-1 libassuan0=2.5.3-7.1 libatomic1=10.2.1-1 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1+b1 libavahi-client3=0.8-3 libavahi-common-data=0.8-3 libavahi-common3=0.8-3 libb-hooks-op-check-perl=0.22-1+b3 libbinutils=2.35.1-5 libblkid1=2.36.1-3 libbrotli1=1.0.9-2+b2 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-6 libc-dev-bin=2.31-6 libc6=2.31-6 libc6-dev=2.31-6 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2.2+b1 libcbor0=0.5.0+dfsg-2 libcc1-0=10.2.1-1 libclass-method-modifiers-perl=2.13-1 libcom-err2=1.45.6-1 libcommons-cli-java=1.4-2 libcommons-codec-java=1.14-1 libcommons-io-java=2.8.0-1 libcommons-logging-java=1.2-2 libcommons-parent-java=43-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-5 libctf0=2.35.1-5 libcups2=2.3.3op1-4 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.20-1 libdebconfclient0=0.255 libdebhelper-perl=13.3 libdevel-callchecker-perl=0.008-1+b2 libdpkg-perl=1.20.5 libdrm-amdgpu1=2.4.103-2 libdrm-common=2.4.103-2 libdrm-intel1=2.4.103-2 libdrm-nouveau2=2.4.103-2 libdrm-radeon1=2.4.103-2 libdrm2=2.4.103-2 libdynaloader-functions-perl=0.003-1 libedit2=3.1-20191231-2+b1 libelf1=0.182-1 libencode-locale-perl=1.05-1.1 libevent-core-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.2.10-1 libfabric1=1.11.0-2 libfakeroot=1.25.3-1.1 libffi7=3.3-5 libfido2-1=1.5.0-2 libfile-dirlist-perl=0.05-2 libfile-homedir-perl=1.006-1 libfile-listing-perl=6.14-1 libfile-stripnondeterminism-perl=1.9.0-1 libfile-touch-perl=0.11-1 libfile-which-perl=1.23-1 libfontbox-java=1:1.8.16-2 libfontconfig1=2.13.1-4.2 libfreemarker-java=2.3.23-9 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.2.1-1 libgcc-s1=10.2.1-1 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgif7=5.1.9-1 libgl1=1.3.2-1 libgl1-mesa-dri=20.2.6-1 libglapi-mesa=20.2.6-1 libglib2.0-0=2.66.4-1 libglvnd0=1.3.2-1 libglx-mesa0=20.2.6-1 libglx0=1.3.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-3 libgomp1=10.2.1-1 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-4 libharfbuzz0b=2.6.7-1 libhogweed6=3.6-2 libhtml-parser-perl=3.75-1+b1 libhtml-tagset-perl=3.20-4 libhtml-tree-perl=5.07-2 libhttp-cookies-perl=6.09-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.26-1 libhttp-negotiate-perl=6.01-1 libhwloc-plugins=2.4.0+dfsg-2 libhwloc15=2.4.0+dfsg-2 libibverbs1=32.0-1+b1 libice6=2:1.0.10-1 libicu67=67.1-5 libidn2-0=2.3.0-4 libimport-into-perl=1.002005-1 libio-html-perl=1.001-1.1 libio-pty-perl=1:1.15-2 libio-socket-ssl-perl=2.068-1 libipc-run-perl=20200505.0-1 libisl23=0.23-1 libitm1=10.2.1-1 libjcommon-java=1.0.23-2 libjfreechart-java=1.0.19-3 libjpeg62-turbo=1:2.0.5-1.1 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkpathsea6=2020.20200327.54578-5 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libksba8=1.5.0-2 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.56+dfsg-1 libllvm11=1:11.0.1~+rc2-1 liblog4j1.2-java=1.2.17-9 liblsan0=10.2.1-1 liblwp-mediatypes-perl=6.04-1 liblwp-protocol-https-perl=6.10-1 liblz4-1=1.9.3-1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmodule-runtime-perl=0.016-1 libmoo-perl=2.004004-1 libmount1=2.36.1-3 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libmpj-java=0.44+dfsg-4 libncursesw6=6.2+20201114-1 libnet-http-perl=6.19-1 libnet-ssleay-perl=1.88-3+b1 libnettle8=3.6-2 libnl-3-200=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnpth0=1.6-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.29-1 libnss3=2:3.60-1 libnuma1=2.0.12-1+b1 libopenmpi3=4.1.0-1 libp11-kit0=0.23.22-1 libpal-java=1.5.1+dfsg-6 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libparams-classify-perl=0.015-1+b3 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libpcsclite1=1.9.0-1 libpdfbox-java=1:1.8.16-2 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libpixman-1-0=0.40.0-1 libpmix2=4.0.0~rc1-2 libpng16-16=1.6.37-3 libpsm-infinipath1=3.3+20.604758e7-6+b1 libpsm2-2=11.2.185-1 libptexenc1=2020.20200327.54578-5 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-1 libpython3.9-stdlib=3.9.1-1 libquadmath0=10.2.1-1 librdmacm1=32.0-1+b1 libreadline8=8.1-1 librole-tiny-perl=2.001004-1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3+b1 libselinux1=3.1-2+b2 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsensors-config=1:3.6.0-2 libsensors5=1:3.6.0-2 libsepol1=3.1-1 libsigsegv2=2.12-3 libsm6=2:1.2.3-1 libsmartcols1=2.36.1-3 libsqlite3-0=3.34.0-1 libssl1.1=1.1.1i-1 libstdc++-10-dev=10.2.1-1 libstdc++6=10.2.1-1 libstrictures-perl=2.000006-1 libsub-override-perl=0.09-2 libsub-quote-perl=2.006006-1 libsynctex2=2020.20200327.54578-5 libsystemd0=247.1-4 libtasn1-6=4.16.0-2 libteckit0=2.5.10+ds1-3 libtexlua53=2020.20200327.54578-5 libtexluajit2=2020.20200327.54578-5 libtimedate-perl=2.3300-1 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtry-tiny-perl=0.30-1 libtsan0=10.2.1-1 libubsan1=10.2.1-1 libuchardet0=0.0.7-1 libucx0=1.9.0~rc1-2 libudev1=247.1-4 libunistring2=0.9.10-4 liburi-perl=5.05-1 libuuid1=2.36.1-3 libvulkan1=1.2.154.1-1 libwww-perl=6.50-1 libwww-robotrules-perl=6.02-1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libx11-xcb1=2:1.6.12-1 libxau6=1:1.0.8-1+b2 libxaw7=2:1.0.13-1.1 libxcb-dri2-0=1.14-2 libxcb-dri3-0=1.14-2 libxcb-glx0=1.14-2 libxcb-present0=1.14-2 libxcb-render0=1.14-2 libxcb-shm0=1.14-2 libxcb-sync1=1.14-2 libxcb-xfixes0=1.14-2 libxcb1=1.14-2 libxdamage1=1:1.1.5-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1.1 libxfixes3=1:5.0.3-2 libxi6=2:1.7.10-1 libxml2=2.9.10+dfsg-6.3+b1 libxmu6=2:1.1.2-2+b3 libxnvctrl0=450.80.02-1+b1 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxt6=1:1.2.0-1 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.9-1 libzstd1=1.4.5+dfsg-4 libzzip-0-13=0.13.62-3.2 linux-libc-dev=5.9.15-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 netbase=6.2 ocl-icd-libopencl1=2.2.13-1 openjdk-11-jdk=11.0.9.1+1-1 openjdk-11-jdk-headless=11.0.9.1+1-1 openjdk-11-jre=11.0.9.1+1-1 openjdk-11-jre-headless=11.0.9.1+1-1 openmpi-bin=4.1.0-1 openmpi-common=4.1.0-1 openssh-client=1:8.4p1-3 openssl=1.1.1i-1 passwd=1:4.8.1-1 patch=2.7.6-6 patchutils=0.4.2-1 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 perl-openssl-defaults=5 phyml=3:3.3.20200621-1 pinentry-curses=1.1.0-4 po-debconf=1.0.21 preview-latex-style=12.2-1 prottest=3.4.2+dfsg-4 python3=3.9.1-1 python3-minimal=3.9.1-1 python3.9=3.9.1-1 python3.9-minimal=3.9.1-1 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 t1utils=1.41-4 tar=1.32+dfsg-1 tex-common=6.15 texlive-base=2020.20201203-2 texlive-binaries=2020.20200327.54578-5 texlive-fonts-recommended=2020.20201203-2 texlive-latex-base=2020.20201203-2 texlive-latex-extra=2020.20201129-2 texlive-latex-recommended=2020.20201203-2 texlive-pictures=2020.20201203-2 tzdata=2020d-1 ucf=3.0043 unzip=6.0-25 util-linux=2.36.1-3 wdiff=1.2.2-2+b1 x11-common=1:7.7+21 xdg-utils=1.1.3-2 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201227T143449Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201220T203231Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d jmodeltest=2.1.10+dfsg-10 && mkdir -p /build/jmodeltest-URRAo0 && dpkg-source --no-check -x /*.dsc /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg && chown -R builduser:builduser /build/jmodeltest-URRAo0" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1608734332" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/jmodeltest-URRAo0 /tmp/jmodeltest-2.1.10+dfsg-10mcma7uv0 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201220T203231Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.AFlOF_V631 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.AFlOF_V631 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-3). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201220T203231Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201220T203231Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (979 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4621 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-6) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201227T143449Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201220T203231Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.AFlOF_V631 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201227T143449Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20201220T203231Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20201227T143449Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201227T143449Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201227T143449Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20201227T143449Z unstable/main amd64 Packages [11.6 MB] Fetched 34.3 MB in 29s (1164 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.AFlOF_V631 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d jmodeltest=2.1.10+dfsg-10 && mkdir -p /build/jmodeltest-URRAo0 && dpkg-source --no-check -x /*.dsc /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg && chown -R builduser:builduser /build/jmodeltest-URRAo0"' exec /tmp/mmdebstrap.AFlOF_V631 Reading package lists... NOTICE: 'jmodeltest' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/jmodeltest.git Please use: git clone https://salsa.debian.org/med-team/jmodeltest.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3957 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main jmodeltest 2.1.10+dfsg-10 (dsc) [2261 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main jmodeltest 2.1.10+dfsg-10 (tar) [3945 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main jmodeltest 2.1.10+dfsg-10 (diff) [9092 B] Fetched 3957 kB in 4s (938 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'jmodeltest_2.1.10+dfsg-10.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting jmodeltest in /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg dpkg-source: info: unpacking jmodeltest_2.1.10+dfsg.orig.tar.xz dpkg-source: info: unpacking jmodeltest_2.1.10+dfsg-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_jars.patch dpkg-source: info: applying do_not_chmod_anything_in_usr_bin.patch dpkg-source: info: applying adapt_config.patch dpkg-source: info: applying replace_natbib_bst_by_plainnat.patch dpkg-source: info: applying remove_BrowserLauncher_reference.patch dpkg-source: info: applying latex_encoding.patch dpkg-source: info: applying fix_alter-lib.patch dpkg-source: info: applying reproducible_build.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1608734332" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.AFlOF_V631 dpkg-buildpackage: info: source package jmodeltest dpkg-buildpackage: info: source version 2.1.10+dfsg-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . debian/rules clean dh clean --with javahelper dh_auto_clean ant clean Buildfile: /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/build.xml clean: BUILD SUCCESSFUL Total time: 2 seconds jh_clean dh_clean debian/rules binary-indep dh binary-indep --with javahelper dh_update_autotools_config -i dh_autoreconf -i dh_auto_configure -i jh_linkjars -i debian/rules override_dh_auto_build make[1]: Entering directory '/build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg' dh_auto_build ant -Duser.name debian Buildfile: /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/build.xml compile: [mkdir] Created dir: /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/build/classes [javac] Compiling 75 source files to /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/build/classes [javac] warning: [path] bad path element "/usr/share/java/xalan.jar": no such file or directory [javac] warning: [path] bad path element "/usr/share/java/avalon-framework.jar": no such file or directory [javac] warning: [path] bad path element "/usr/share/java/excalibur-logkit.jar": no such file or directory [javac] warning: [path] bad path element "/usr/share/java/AbsoluteLayout.jar": no such file or directory [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/Distributor.java:23: warning: [deprecation] Observable in java.util has been deprecated [javac] import java.util.Observable; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlMPJ.java:24: warning: [deprecation] Observable in java.util has been deprecated [javac] import java.util.Observable; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlMPJ.java:25: warning: [deprecation] Observer in java.util has been deprecated [javac] import java.util.Observer; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhyml.java:28: warning: [deprecation] Observable in java.util has been deprecated [javac] import java.util.Observable; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhyml.java:29: warning: [deprecation] Observer in java.util has been deprecated [javac] import java.util.Observer; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/MultipleDistributor.java:24: warning: [deprecation] Observable in java.util has been deprecated [javac] import java.util.Observable; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlHybrid.java:24: warning: [deprecation] Observable in java.util has been deprecated [javac] import java.util.Observable; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlHybrid.java:25: warning: [deprecation] Observer in java.util has been deprecated [javac] import java.util.Observer; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/PhymlParallelModel.java:23: warning: [deprecation] Observable in java.util has been deprecated [javac] import java.util.Observable; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/PhymlParallelModel.java:24: warning: [deprecation] Observer in java.util has been deprecated [javac] import java.util.Observer; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/PhymlSingleModel.java:24: warning: [deprecation] Observable in java.util has been deprecated [javac] import java.util.Observable; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlClustering.java:22: warning: [deprecation] Observable in java.util has been deprecated [javac] import java.util.Observable; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlClustering.java:23: warning: [deprecation] Observer in java.util has been deprecated [javac] import java.util.Observer; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlThread.java:23: warning: [deprecation] Observable in java.util has been deprecated [javac] import java.util.Observable; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlThread.java:24: warning: [deprecation] Observer in java.util has been deprecated [javac] import java.util.Observer; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/gui/Frame_Progress.java:35: warning: [deprecation] Observable in java.util has been deprecated [javac] import java.util.Observable; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/gui/Frame_Progress.java:36: warning: [deprecation] Observer in java.util has been deprecated [javac] import java.util.Observer; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/observer/ConsoleProgressObserver.java:27: warning: [deprecation] Observable in java.util has been deprecated [javac] import java.util.Observable; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/observer/ConsoleProgressObserver.java:28: warning: [deprecation] Observer in java.util has been deprecated [javac] import java.util.Observer; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/ModelTest.java:1049: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] new Integer(numberOfThreads)); [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/Distributor.java:35: warning: [deprecation] Observable in java.util has been deprecated [javac] public class Distributor extends Observable implements Runnable { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhyml.java:56: warning: [deprecation] Observable in java.util has been deprecated [javac] public abstract class RunPhyml extends Observable implements Observer { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhyml.java:56: warning: [deprecation] Observer in java.util has been deprecated [javac] public abstract class RunPhyml extends Observable implements Observer { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhyml.java:83: warning: [deprecation] Observer in java.util has been deprecated [javac] protected Observer progress; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhyml.java:197: warning: [deprecation] Observer in java.util has been deprecated [javac] public RunPhyml(Observer progress, ApplicationOptions options, [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhyml.java:474: warning: [deprecation] Observable in java.util has been deprecated [javac] public void update(Observable o, Object arg) { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlMPJ.java:56: warning: [deprecation] Observer in java.util has been deprecated [javac] public RunPhymlMPJ(Observer progress, ApplicationOptions options, [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlMPJ.java:199: warning: [deprecation] Observable in java.util has been deprecated [javac] public void update(Observable o, Object arg) { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/MultipleDistributor.java:37: warning: [deprecation] Observable in java.util has been deprecated [javac] public class MultipleDistributor extends Observable implements Runnable { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlHybrid.java:54: warning: [deprecation] Observer in java.util has been deprecated [javac] public RunPhymlHybrid(Observer progress, ApplicationOptions options, [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlHybrid.java:62: warning: [deprecation] Observer in java.util has been deprecated [javac] public RunPhymlHybrid(int mpjMe, int mpjSize, Observer progress, [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlHybrid.java:288: warning: [deprecation] Observable in java.util has been deprecated [javac] public void update(Observable o, Object arg) { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/PhymlParallelModel.java:32: warning: [deprecation] Observable in java.util has been deprecated [javac] public class PhymlParallelModel extends Observable implements Observer { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/PhymlParallelModel.java:32: warning: [deprecation] Observer in java.util has been deprecated [javac] public class PhymlParallelModel extends Observable implements Observer { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/PhymlParallelModel.java:100: warning: [deprecation] Observable in java.util has been deprecated [javac] public void update(Observable o, Object arg) { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/PhymlSingleModel.java:34: warning: [deprecation] Observable in java.util has been deprecated [javac] public class PhymlSingleModel extends Observable implements Runnable { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlClustering.java:42: warning: [deprecation] Observer in java.util has been deprecated [javac] public RunPhymlClustering(Observer progress, ApplicationOptions options, [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlClustering.java:123: warning: [deprecation] Observable in java.util has been deprecated [javac] public void update(Observable o, Object arg) { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlThread.java:46: warning: [deprecation] Observer in java.util has been deprecated [javac] public RunPhymlThread(Observer progress, ApplicationOptions options, [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/RunPhymlThread.java:176: warning: [deprecation] Observable in java.util has been deprecated [javac] public void update(Observable o, Object arg) { [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:62: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] data[i][0] = new Integer( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:66: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][3] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:68: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] data[i][4] = new Integer( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:72: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][5] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:75: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][6] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:78: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][7] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:81: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][8] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:92: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][9] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:99: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][10] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:101: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][11] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:103: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][12] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:105: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][13] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:107: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][14] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:109: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][15] = new Double(1); [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:176: warning: [deprecation] ROUND_HALF_UP in BigDecimal has been deprecated [javac] bd = bd.setScale(decimalPlace, BigDecimal.ROUND_HALF_UP); [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:176: warning: [deprecation] setScale(int,int) in BigDecimal has been deprecated [javac] bd = bd.setScale(decimalPlace, BigDecimal.ROUND_HALF_UP); [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:187: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] data[i][0] = new Integer( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:191: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][3] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:193: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] data[i][4] = new Integer( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:195: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][5] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:197: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][6] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:199: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][7] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:201: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][8] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:205: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][9] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:214: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] data[i][0] = new Integer( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:218: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][3] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:220: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] data[i][4] = new Integer( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:222: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][5] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:224: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][6] = new Double( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:227: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][7] = new Double( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:230: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][8] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:234: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][9] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:243: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] data[i][0] = new Integer( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:247: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][3] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:249: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] data[i][4] = new Integer( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:251: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][5] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:253: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][6] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:255: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][7] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:257: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][8] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:261: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][9] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:270: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] data[i][0] = new Integer( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:274: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][3] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:276: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] data[i][4] = new Integer( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:278: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][5] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:280: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][6] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:282: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][7] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableModel.java:284: warning: [deprecation] Double(double) in Double has been deprecated [javac] data[i][8] = new Double(Round( [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/TableSorter.java:317: warning: [deprecation] getModifiers() in InputEvent has been deprecated [javac] int shiftPressed = e.getModifiers()&InputEvent.SHIFT_MASK; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/TableSorter.java:317: warning: [deprecation] SHIFT_MASK in InputEvent has been deprecated [javac] int shiftPressed = e.getModifiers()&InputEvent.SHIFT_MASK; [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableCellRenderer.java:55: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] whichValue = new Integer(ModelTest.getMinAIC().getId()); [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableCellRenderer.java:57: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] whichValue = new Integer(ModelTest.getMinAICc().getId()); [javac] ^ [javac] /build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/utilities/MyTableCellRenderer.java:59: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] whichValue = new Integer(ModelTest.getMinBIC().getId()); [javac] ^ [javac] Note: Some input files additionally use or override a deprecated API. 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This is BibTeX, Version 0.99d (TeX Live 2020/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: biblio.bib Warning--empty journal in Posada-2003 (There was 1 warning) This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2020-10-01> patch level 2 L3 programming layer <2020-10-27> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/pslatex/pslatex.sty LaTeX Warning: Font shape declaration has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 226. LaTeX Warning: Font shape declaration has incorrect series value `mc'. It should not contain an `m'! Please correct it. 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This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2020-10-01> patch level 2 L3 programming layer <2020-10-27> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/pslatex/pslatex.sty LaTeX Warning: Font shape declaration has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 226. LaTeX Warning: Font shape declaration has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 230. LaTeX Warning: Font shape declaration has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 234. 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Transcript written on manual.log. make[1]: Leaving directory '/build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg' dh_auto_test -i create-stamp debian/debhelper-build-stamp dh_prep -i dh_installdirs -i dh_auto_install -i dh_install -i jh_installjavadoc -i dh_installdocs -i debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg' dh_installchangelogs dist/CHANGELOG make[1]: Leaving directory '/build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg' dh_installman -i dh_lintian -i dh_perl -i dh_link -i jh_installlibs -i jh_classpath -i jh_manifest -i jh_exec -i jh_depends -i dh_strip_nondeterminism -i debian/rules override_dh_compress make[1]: Entering directory '/build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/jmodeltest-URRAo0/jmodeltest-2.1.10+dfsg' dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'jmodeltest' in '../jmodeltest_2.1.10+dfsg-10_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../jmodeltest_2.1.10+dfsg-10_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/jmodeltest-URRAo0 /tmp/jmodeltest-2.1.10+dfsg-10mcma7uv0 I: cleaning package lists and apt cache... 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