Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/j/jellyfish/jellyfish_2.3.0-13_amd64.buildinfo Use metasnap for getting required timestamps Cannot get timestamps from metasnap: 404 (Not Found) Use snapshot for getting required timestamps Get source package info: jellyfish=2.3.0-13 Source URL: http://snapshot.notset.fr/mr/package/jellyfish/2.3.0-13/srcfiles?fileinfo=1 Initialize APT cache Get binary package info: adduser=3.121 Binary URL: http://snapshot.notset.fr/mr/binary/adduser/3.121/binfiles?fileinfo=1 Get binary package info: apt=2.4.5 Binary URL: http://snapshot.notset.fr/mr/binary/apt/2.4.5/binfiles?fileinfo=1 Get binary package info: autoconf=2.71-2 Binary URL: http://snapshot.notset.fr/mr/binary/autoconf/2.71-2/binfiles?fileinfo=1 Get binary package info: autoconf-archive=20210219-2.1 Binary URL: http://snapshot.notset.fr/mr/binary/autoconf-archive/20210219-2.1/binfiles?fileinfo=1 Get binary package info: automake=1:1.16.5-1.3 Binary URL: http://snapshot.notset.fr/mr/binary/automake/1:1.16.5-1.3/binfiles?fileinfo=1 Get binary package info: autopoint=0.21-6 Binary URL: http://snapshot.notset.fr/mr/binary/autopoint/0.21-6/binfiles?fileinfo=1 Get binary package info: autotools-dev=20220109.1 Binary URL: http://snapshot.notset.fr/mr/binary/autotools-dev/20220109.1/binfiles?fileinfo=1 Get binary package info: base-files=12.2 Binary URL: http://snapshot.notset.fr/mr/binary/base-files/12.2/binfiles?fileinfo=1 Get binary package info: base-passwd=3.5.52 Binary URL: http://snapshot.notset.fr/mr/binary/base-passwd/3.5.52/binfiles?fileinfo=1 Get binary package info: bash=5.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/bash/5.1-6/binfiles?fileinfo=1 Get binary package info: bc=1.07.1-3+b1 Binary URL: http://snapshot.notset.fr/mr/binary/bc/1.07.1-3+b1/binfiles?fileinfo=1 Get binary package info: binutils=2.38-3 Binary URL: http://snapshot.notset.fr/mr/binary/binutils/2.38-3/binfiles?fileinfo=1 Get binary package info: binutils-common=2.38-3 Binary URL: http://snapshot.notset.fr/mr/binary/binutils-common/2.38-3/binfiles?fileinfo=1 Get binary package info: binutils-x86-64-linux-gnu=2.38-3 Binary URL: http://snapshot.notset.fr/mr/binary/binutils-x86-64-linux-gnu/2.38-3/binfiles?fileinfo=1 Get binary package info: bsdextrautils=2.38-2 Binary URL: http://snapshot.notset.fr/mr/binary/bsdextrautils/2.38-2/binfiles?fileinfo=1 Get binary package info: bsdutils=1:2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/bsdutils/1:2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: build-essential=12.9 Binary URL: http://snapshot.notset.fr/mr/binary/build-essential/12.9/binfiles?fileinfo=1 Get binary package info: bzip2=1.0.8-5 Binary URL: http://snapshot.notset.fr/mr/binary/bzip2/1.0.8-5/binfiles?fileinfo=1 Get binary package info: ca-certificates=20211016 Binary URL: http://snapshot.notset.fr/mr/binary/ca-certificates/20211016/binfiles?fileinfo=1 Get binary package info: chrpath=0.16-2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/chrpath/0.16-2+b1/binfiles?fileinfo=1 Get binary package info: coreutils=8.32-4.1 Binary URL: http://snapshot.notset.fr/mr/binary/coreutils/8.32-4.1/binfiles?fileinfo=1 Get binary package info: cpp=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/cpp/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: cpp-11=11.2.0-19 Binary URL: http://snapshot.notset.fr/mr/binary/cpp-11/11.2.0-19/binfiles?fileinfo=1 Get binary package info: d-shlibs=0.104 Binary URL: http://snapshot.notset.fr/mr/binary/d-shlibs/0.104/binfiles?fileinfo=1 Get binary package info: dash=0.5.11+git20210903+057cd650a4ed-8 Binary URL: http://snapshot.notset.fr/mr/binary/dash/0.5.11+git20210903+057cd650a4ed-8/binfiles?fileinfo=1 Get binary package info: debconf=1.5.79 Binary URL: http://snapshot.notset.fr/mr/binary/debconf/1.5.79/binfiles?fileinfo=1 Get binary package info: debhelper=13.6 Binary URL: http://snapshot.notset.fr/mr/binary/debhelper/13.6/binfiles?fileinfo=1 Get binary package info: debian-archive-keyring=2021.1.1 Binary URL: http://snapshot.notset.fr/mr/binary/debian-archive-keyring/2021.1.1/binfiles?fileinfo=1 Get binary package info: debianutils=5.7-0.1 Binary URL: http://snapshot.notset.fr/mr/binary/debianutils/5.7-0.1/binfiles?fileinfo=1 Get binary package info: dh-autoreconf=20 Binary URL: http://snapshot.notset.fr/mr/binary/dh-autoreconf/20/binfiles?fileinfo=1 Get binary package info: dh-python=5.20220403 Binary URL: http://snapshot.notset.fr/mr/binary/dh-python/5.20220403/binfiles?fileinfo=1 Get binary package info: dh-strip-nondeterminism=1.13.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/dh-strip-nondeterminism/1.13.0-1/binfiles?fileinfo=1 Get binary package info: diffutils=1:3.7-5 Binary URL: http://snapshot.notset.fr/mr/binary/diffutils/1:3.7-5/binfiles?fileinfo=1 Get binary package info: dos2unix=7.4.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/dos2unix/7.4.2-2/binfiles?fileinfo=1 Get binary package info: dpkg=1.21.7 Binary URL: http://snapshot.notset.fr/mr/binary/dpkg/1.21.7/binfiles?fileinfo=1 Get binary package info: dpkg-dev=1.21.7 Binary URL: http://snapshot.notset.fr/mr/binary/dpkg-dev/1.21.7/binfiles?fileinfo=1 Get binary package info: dwz=0.14-1 Binary URL: http://snapshot.notset.fr/mr/binary/dwz/0.14-1/binfiles?fileinfo=1 Get binary package info: file=1:5.41-3 Binary URL: http://snapshot.notset.fr/mr/binary/file/1:5.41-3/binfiles?fileinfo=1 Get binary package info: findutils=4.9.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/findutils/4.9.0-2/binfiles?fileinfo=1 Get binary package info: g++=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/g++/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: g++-11=11.2.0-19 Binary URL: http://snapshot.notset.fr/mr/binary/g++-11/11.2.0-19/binfiles?fileinfo=1 Get binary package info: gcc=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/gcc/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: gcc-11=11.2.0-19 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-11/11.2.0-19/binfiles?fileinfo=1 Get binary package info: gcc-11-base=11.2.0-19 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-11-base/11.2.0-19/binfiles?fileinfo=1 Get binary package info: gcc-12-base=12-20220319-1 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-12-base/12-20220319-1/binfiles?fileinfo=1 Get binary package info: gettext=0.21-6 Binary URL: http://snapshot.notset.fr/mr/binary/gettext/0.21-6/binfiles?fileinfo=1 Get binary package info: gettext-base=0.21-6 Binary URL: http://snapshot.notset.fr/mr/binary/gettext-base/0.21-6/binfiles?fileinfo=1 Get binary package info: gpgv=2.2.27-3+b1 Binary URL: http://snapshot.notset.fr/mr/binary/gpgv/2.2.27-3+b1/binfiles?fileinfo=1 Get binary package info: grep=3.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/grep/3.7-1/binfiles?fileinfo=1 Get binary package info: groff-base=1.22.4-8 Binary URL: http://snapshot.notset.fr/mr/binary/groff-base/1.22.4-8/binfiles?fileinfo=1 Get binary package info: gzip=1.12-1 Binary URL: http://snapshot.notset.fr/mr/binary/gzip/1.12-1/binfiles?fileinfo=1 Get binary package info: hostname=3.23 Binary URL: http://snapshot.notset.fr/mr/binary/hostname/3.23/binfiles?fileinfo=1 Get binary package info: init-system-helpers=1.62 Binary URL: http://snapshot.notset.fr/mr/binary/init-system-helpers/1.62/binfiles?fileinfo=1 Get binary package info: intltool-debian=0.35.0+20060710.5 Binary URL: http://snapshot.notset.fr/mr/binary/intltool-debian/0.35.0+20060710.5/binfiles?fileinfo=1 Get binary package info: libacl1=2.3.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libacl1/2.3.1-1/binfiles?fileinfo=1 Get binary package info: libapt-pkg6.0=2.4.5 Binary URL: http://snapshot.notset.fr/mr/binary/libapt-pkg6.0/2.4.5/binfiles?fileinfo=1 Get binary package info: libarchive-zip-perl=1.68-1 Binary URL: http://snapshot.notset.fr/mr/binary/libarchive-zip-perl/1.68-1/binfiles?fileinfo=1 Get binary package info: libasan6=11.2.0-19 Binary URL: http://snapshot.notset.fr/mr/binary/libasan6/11.2.0-19/binfiles?fileinfo=1 Get binary package info: libatomic1=12-20220319-1 Binary URL: http://snapshot.notset.fr/mr/binary/libatomic1/12-20220319-1/binfiles?fileinfo=1 Get binary package info: libattr1=1:2.5.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libattr1/1:2.5.1-1/binfiles?fileinfo=1 Get binary package info: libaudit-common=1:3.0.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaudit-common/1:3.0.7-1/binfiles?fileinfo=1 Get binary package info: libaudit1=1:3.0.7-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libaudit1/1:3.0.7-1+b1/binfiles?fileinfo=1 Get binary package info: libbinutils=2.38-3 Binary URL: http://snapshot.notset.fr/mr/binary/libbinutils/2.38-3/binfiles?fileinfo=1 Get binary package info: libblkid1=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libblkid1/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: libbrotli1=1.0.9-2+b3 Binary URL: http://snapshot.notset.fr/mr/binary/libbrotli1/1.0.9-2+b3/binfiles?fileinfo=1 Get binary package info: libbsd0=0.11.6-1 Binary URL: http://snapshot.notset.fr/mr/binary/libbsd0/0.11.6-1/binfiles?fileinfo=1 Get binary package info: libbz2-1.0=1.0.8-5 Binary URL: http://snapshot.notset.fr/mr/binary/libbz2-1.0/1.0.8-5/binfiles?fileinfo=1 Get binary package info: libc-bin=2.33-7 Binary URL: http://snapshot.notset.fr/mr/binary/libc-bin/2.33-7/binfiles?fileinfo=1 Get binary package info: libc-dev-bin=2.33-7 Binary URL: http://snapshot.notset.fr/mr/binary/libc-dev-bin/2.33-7/binfiles?fileinfo=1 Get binary package info: libc6=2.33-7 Binary URL: http://snapshot.notset.fr/mr/binary/libc6/2.33-7/binfiles?fileinfo=1 Get binary package info: libc6-dev=2.33-7 Binary URL: http://snapshot.notset.fr/mr/binary/libc6-dev/2.33-7/binfiles?fileinfo=1 Get binary package info: libcap-ng0=0.7.9-2.2+b2 Binary URL: http://snapshot.notset.fr/mr/binary/libcap-ng0/0.7.9-2.2+b2/binfiles?fileinfo=1 Get binary package info: libcap2=1:2.44-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcap2/1:2.44-1/binfiles?fileinfo=1 Get binary package info: libcc1-0=12-20220319-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcc1-0/12-20220319-1/binfiles?fileinfo=1 Get binary package info: libcom-err2=1.46.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/libcom-err2/1.46.5-2/binfiles?fileinfo=1 Get binary package info: libcrypt-dev=1:4.4.27-1.1 Binary URL: http://snapshot.notset.fr/mr/binary/libcrypt-dev/1:4.4.27-1.1/binfiles?fileinfo=1 Get binary package info: libcrypt1=1:4.4.27-1.1 Binary URL: http://snapshot.notset.fr/mr/binary/libcrypt1/1:4.4.27-1.1/binfiles?fileinfo=1 Get binary package info: libctf-nobfd0=2.38-3 Binary URL: http://snapshot.notset.fr/mr/binary/libctf-nobfd0/2.38-3/binfiles?fileinfo=1 Get binary package info: libctf0=2.38-3 Binary URL: http://snapshot.notset.fr/mr/binary/libctf0/2.38-3/binfiles?fileinfo=1 Get binary package info: libcurl3-gnutls=7.82.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libcurl3-gnutls/7.82.0-2/binfiles?fileinfo=1 Get binary package info: libcurl4-gnutls-dev=7.82.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libcurl4-gnutls-dev/7.82.0-2/binfiles?fileinfo=1 Get binary package info: libdb5.3=5.3.28+dfsg1-0.8 Binary URL: http://snapshot.notset.fr/mr/binary/libdb5.3/5.3.28+dfsg1-0.8/binfiles?fileinfo=1 Get binary package info: libdebconfclient0=0.261 Binary URL: http://snapshot.notset.fr/mr/binary/libdebconfclient0/0.261/binfiles?fileinfo=1 Get binary package info: libdebhelper-perl=13.6 Binary URL: http://snapshot.notset.fr/mr/binary/libdebhelper-perl/13.6/binfiles?fileinfo=1 Get binary package info: libdeflate-dev=1.10-2 Binary URL: http://snapshot.notset.fr/mr/binary/libdeflate-dev/1.10-2/binfiles?fileinfo=1 Get binary package info: libdeflate0=1.10-2 Binary URL: http://snapshot.notset.fr/mr/binary/libdeflate0/1.10-2/binfiles?fileinfo=1 Get binary package info: libdpkg-perl=1.21.7 Binary URL: http://snapshot.notset.fr/mr/binary/libdpkg-perl/1.21.7/binfiles?fileinfo=1 Get binary package info: libedit2=3.1-20210910-1 Binary URL: http://snapshot.notset.fr/mr/binary/libedit2/3.1-20210910-1/binfiles?fileinfo=1 Get binary package info: libelf1=0.186-1 Binary URL: http://snapshot.notset.fr/mr/binary/libelf1/0.186-1/binfiles?fileinfo=1 Get binary package info: libexpat1=2.4.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/libexpat1/2.4.8-1/binfiles?fileinfo=1 Get binary package info: libexpat1-dev=2.4.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/libexpat1-dev/2.4.8-1/binfiles?fileinfo=1 Get binary package info: libffi8=3.4.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/libffi8/3.4.2-4/binfiles?fileinfo=1 Get binary package info: libfile-stripnondeterminism-perl=1.13.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libfile-stripnondeterminism-perl/1.13.0-1/binfiles?fileinfo=1 Get binary package info: libgcc-11-dev=11.2.0-19 Binary URL: http://snapshot.notset.fr/mr/binary/libgcc-11-dev/11.2.0-19/binfiles?fileinfo=1 Get binary package info: libgcc-s1=12-20220319-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgcc-s1/12-20220319-1/binfiles?fileinfo=1 Get binary package info: libgcrypt20=1.10.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libgcrypt20/1.10.1-2/binfiles?fileinfo=1 Get binary package info: libgdbm-compat4=1.23-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgdbm-compat4/1.23-1/binfiles?fileinfo=1 Get binary package info: libgdbm6=1.23-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgdbm6/1.23-1/binfiles?fileinfo=1 Get binary package info: libglib2.0-0=2.72.0-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libglib2.0-0/2.72.0-1+b1/binfiles?fileinfo=1 Get binary package info: libgmp10=2:6.2.1+dfsg-3 Binary URL: http://snapshot.notset.fr/mr/binary/libgmp10/2:6.2.1+dfsg-3/binfiles?fileinfo=1 Get binary package info: libgnutls30=3.7.3-4+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libgnutls30/3.7.3-4+b1/binfiles?fileinfo=1 Get binary package info: libgomp1=12-20220319-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgomp1/12-20220319-1/binfiles?fileinfo=1 Get binary package info: libgpg-error0=1.43-3 Binary URL: http://snapshot.notset.fr/mr/binary/libgpg-error0/1.43-3/binfiles?fileinfo=1 Get binary package info: libgssapi-krb5-2=1.19.2-2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libgssapi-krb5-2/1.19.2-2+b1/binfiles?fileinfo=1 Get binary package info: libhogweed6=3.7.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libhogweed6/3.7.3-1/binfiles?fileinfo=1 Get binary package info: libhts-dev=1.13+ds-2 Binary URL: http://snapshot.notset.fr/mr/binary/libhts-dev/1.13+ds-2/binfiles?fileinfo=1 Get binary package info: libhts3=1.13+ds-2 Binary URL: http://snapshot.notset.fr/mr/binary/libhts3/1.13+ds-2/binfiles?fileinfo=1 Get binary package info: libhtscodecs2=1.2.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libhtscodecs2/1.2.1-1/binfiles?fileinfo=1 Get binary package info: libicu67=67.1-7 Binary URL: http://snapshot.notset.fr/mr/binary/libicu67/67.1-7/binfiles?fileinfo=1 Get binary package info: libidn2-0=2.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libidn2-0/2.3.2-2/binfiles?fileinfo=1 Get binary package info: libisl23=0.24-2 Binary URL: http://snapshot.notset.fr/mr/binary/libisl23/0.24-2/binfiles?fileinfo=1 Get binary package info: libitm1=12-20220319-1 Binary URL: http://snapshot.notset.fr/mr/binary/libitm1/12-20220319-1/binfiles?fileinfo=1 Get binary package info: libjs-jquery=3.6.0+dfsg+~3.5.13-1 Binary URL: http://snapshot.notset.fr/mr/binary/libjs-jquery/3.6.0+dfsg+~3.5.13-1/binfiles?fileinfo=1 Get binary package info: libjs-sphinxdoc=4.5.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libjs-sphinxdoc/4.5.0-1/binfiles?fileinfo=1 Get binary package info: libjs-underscore=1.13.2~dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/libjs-underscore/1.13.2~dfsg-2/binfiles?fileinfo=1 Get binary package info: libk5crypto3=1.19.2-2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libk5crypto3/1.19.2-2+b1/binfiles?fileinfo=1 Get binary package info: libkeyutils1=1.6.1-3 Binary URL: http://snapshot.notset.fr/mr/binary/libkeyutils1/1.6.1-3/binfiles?fileinfo=1 Get binary package info: libkrb5-3=1.19.2-2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libkrb5-3/1.19.2-2+b1/binfiles?fileinfo=1 Get binary package info: libkrb5support0=1.19.2-2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libkrb5support0/1.19.2-2+b1/binfiles?fileinfo=1 Get binary package info: libldap-2.5-0=2.5.11+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/libldap-2.5-0/2.5.11+dfsg-1/binfiles?fileinfo=1 Get binary package info: liblsan0=12-20220319-1 Binary URL: http://snapshot.notset.fr/mr/binary/liblsan0/12-20220319-1/binfiles?fileinfo=1 Get binary package info: liblz4-1=1.9.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblz4-1/1.9.3-2/binfiles?fileinfo=1 Get binary package info: liblzma-dev=5.2.5-2.1 Binary URL: http://snapshot.notset.fr/mr/binary/liblzma-dev/5.2.5-2.1/binfiles?fileinfo=1 Get binary package info: liblzma5=5.2.5-2.1 Binary URL: http://snapshot.notset.fr/mr/binary/liblzma5/5.2.5-2.1/binfiles?fileinfo=1 Get binary package info: libmagic-mgc=1:5.41-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmagic-mgc/1:5.41-3/binfiles?fileinfo=1 Get binary package info: libmagic1=1:5.41-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmagic1/1:5.41-3/binfiles?fileinfo=1 Get binary package info: libmd0=1.0.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libmd0/1.0.4-1/binfiles?fileinfo=1 Get binary package info: libmount1=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libmount1/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: libmpc3=1.2.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libmpc3/1.2.1-2/binfiles?fileinfo=1 Get binary package info: libmpdec3=2.5.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libmpdec3/2.5.1-2/binfiles?fileinfo=1 Get binary package info: libmpfr6=4.1.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmpfr6/4.1.0-3/binfiles?fileinfo=1 Get binary package info: libncurses6=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libncurses6/6.3-2/binfiles?fileinfo=1 Get binary package info: libncursesw6=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libncursesw6/6.3-2/binfiles?fileinfo=1 Get binary package info: libnettle8=3.7.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libnettle8/3.7.3-1/binfiles?fileinfo=1 Get binary package info: libnghttp2-14=1.43.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libnghttp2-14/1.43.0-1/binfiles?fileinfo=1 Get binary package info: libnsl-dev=1.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libnsl-dev/1.3.0-2/binfiles?fileinfo=1 Get binary package info: libnsl2=1.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libnsl2/1.3.0-2/binfiles?fileinfo=1 Get binary package info: libp11-kit0=0.24.0-6 Binary URL: http://snapshot.notset.fr/mr/binary/libp11-kit0/0.24.0-6/binfiles?fileinfo=1 Get binary package info: libpam-modules=1.4.0-11 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-modules/1.4.0-11/binfiles?fileinfo=1 Get binary package info: libpam-modules-bin=1.4.0-11 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-modules-bin/1.4.0-11/binfiles?fileinfo=1 Get binary package info: libpam-runtime=1.4.0-11 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-runtime/1.4.0-11/binfiles?fileinfo=1 Get binary package info: libpam0g=1.4.0-11 Binary URL: http://snapshot.notset.fr/mr/binary/libpam0g/1.4.0-11/binfiles?fileinfo=1 Get binary package info: libpcre2-8-0=10.39-3 Binary URL: http://snapshot.notset.fr/mr/binary/libpcre2-8-0/10.39-3/binfiles?fileinfo=1 Get binary package info: libpcre3=2:8.39-14 Binary URL: http://snapshot.notset.fr/mr/binary/libpcre3/2:8.39-14/binfiles?fileinfo=1 Get binary package info: libperl5.34=5.34.0-4 Binary URL: http://snapshot.notset.fr/mr/binary/libperl5.34/5.34.0-4/binfiles?fileinfo=1 Get binary package info: libpipeline1=1.5.5-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpipeline1/1.5.5-1/binfiles?fileinfo=1 Get binary package info: libprocps8=2:3.3.17-7+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libprocps8/2:3.3.17-7+b1/binfiles?fileinfo=1 Get binary package info: libpsl5=0.21.0-1.2 Binary URL: http://snapshot.notset.fr/mr/binary/libpsl5/0.21.0-1.2/binfiles?fileinfo=1 Get binary package info: libpython3-all-dev=3.10.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3-all-dev/3.10.4-1/binfiles?fileinfo=1 Get binary package info: libpython3-dev=3.10.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3-dev/3.10.4-1/binfiles?fileinfo=1 Get binary package info: libpython3-stdlib=3.10.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3-stdlib/3.10.4-1/binfiles?fileinfo=1 Get binary package info: libpython3.10=3.10.4-3 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.10/3.10.4-3/binfiles?fileinfo=1 Get binary package info: libpython3.10-dev=3.10.4-3 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.10-dev/3.10.4-3/binfiles?fileinfo=1 Get binary package info: libpython3.10-minimal=3.10.4-3 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.10-minimal/3.10.4-3/binfiles?fileinfo=1 Get binary package info: libpython3.10-stdlib=3.10.4-3 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.10-stdlib/3.10.4-3/binfiles?fileinfo=1 Get binary package info: libpython3.9=3.9.12-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.9/3.9.12-1/binfiles?fileinfo=1 Get binary package info: libpython3.9-dev=3.9.12-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.9-dev/3.9.12-1/binfiles?fileinfo=1 Get binary package info: libpython3.9-minimal=3.9.12-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.9-minimal/3.9.12-1/binfiles?fileinfo=1 Get binary package info: libpython3.9-stdlib=3.9.12-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.9-stdlib/3.9.12-1/binfiles?fileinfo=1 Get binary package info: libquadmath0=12-20220319-1 Binary URL: http://snapshot.notset.fr/mr/binary/libquadmath0/12-20220319-1/binfiles?fileinfo=1 Get binary package info: libreadline8=8.1.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/libreadline8/8.1.2-1/binfiles?fileinfo=1 Get binary package info: librtmp1=2.4+20151223.gitfa8646d.1-2+b2 Binary URL: http://snapshot.notset.fr/mr/binary/librtmp1/2.4+20151223.gitfa8646d.1-2+b2/binfiles?fileinfo=1 Get binary package info: libruby3.0=3.0.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libruby3.0/3.0.3-1/binfiles?fileinfo=1 Get binary package info: libsasl2-2=2.1.28+dfsg-2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libsasl2-2/2.1.28+dfsg-2+b1/binfiles?fileinfo=1 Get binary package info: libsasl2-modules-db=2.1.28+dfsg-2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libsasl2-modules-db/2.1.28+dfsg-2+b1/binfiles?fileinfo=1 Get binary package info: libseccomp2=2.5.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libseccomp2/2.5.3-2/binfiles?fileinfo=1 Get binary package info: libselinux1=3.3-1+b2 Binary URL: http://snapshot.notset.fr/mr/binary/libselinux1/3.3-1+b2/binfiles?fileinfo=1 Get binary package info: libsemanage-common=3.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsemanage-common/3.3-1/binfiles?fileinfo=1 Get binary package info: libsemanage2=3.3-1+b2 Binary URL: http://snapshot.notset.fr/mr/binary/libsemanage2/3.3-1+b2/binfiles?fileinfo=1 Get binary package info: libsepol2=3.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsepol2/3.3-1/binfiles?fileinfo=1 Get binary package info: libsigsegv2=2.14-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsigsegv2/2.14-1/binfiles?fileinfo=1 Get binary package info: libsmartcols1=2.38-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsmartcols1/2.38-2/binfiles?fileinfo=1 Get binary package info: libsqlite3-0=3.38.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsqlite3-0/3.38.2-1/binfiles?fileinfo=1 Get binary package info: libssh2-1=1.10.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libssh2-1/1.10.0-3/binfiles?fileinfo=1 Get binary package info: libssl1.1=1.1.1n-1 Binary URL: http://snapshot.notset.fr/mr/binary/libssl1.1/1.1.1n-1/binfiles?fileinfo=1 Get binary package info: libstdc++-11-dev=11.2.0-19 Binary URL: http://snapshot.notset.fr/mr/binary/libstdc++-11-dev/11.2.0-19/binfiles?fileinfo=1 Get binary package info: libstdc++6=12-20220319-1 Binary URL: http://snapshot.notset.fr/mr/binary/libstdc++6/12-20220319-1/binfiles?fileinfo=1 Get binary package info: libsub-override-perl=0.09-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsub-override-perl/0.09-2/binfiles?fileinfo=1 Get binary package info: libsystemd0=250.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsystemd0/250.4-1/binfiles?fileinfo=1 Get binary package info: libtasn1-6=4.18.0-4 Binary URL: http://snapshot.notset.fr/mr/binary/libtasn1-6/4.18.0-4/binfiles?fileinfo=1 Get binary package info: libtinfo6=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtinfo6/6.3-2/binfiles?fileinfo=1 Get binary package info: libtirpc-common=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc-common/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtirpc-dev=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc-dev/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtirpc3=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc3/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtool=2.4.7-3 Binary URL: http://snapshot.notset.fr/mr/binary/libtool/2.4.7-3/binfiles?fileinfo=1 Get binary package info: libtsan0=11.2.0-19 Binary URL: http://snapshot.notset.fr/mr/binary/libtsan0/11.2.0-19/binfiles?fileinfo=1 Get binary package info: libubsan1=12-20220319-1 Binary URL: http://snapshot.notset.fr/mr/binary/libubsan1/12-20220319-1/binfiles?fileinfo=1 Get binary package info: libuchardet0=0.0.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libuchardet0/0.0.7-1/binfiles?fileinfo=1 Get binary package info: libudev1=250.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libudev1/250.4-1/binfiles?fileinfo=1 Get binary package info: libunistring2=1.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libunistring2/1.0-1/binfiles?fileinfo=1 Get binary package info: libuuid1=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libuuid1/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: libxml2=2.9.13+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/libxml2/2.9.13+dfsg-1/binfiles?fileinfo=1 Get binary package info: libxxhash0=0.8.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libxxhash0/0.8.1-1/binfiles?fileinfo=1 Get binary package info: libyaml-0-2=0.2.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/libyaml-0-2/0.2.2-1/binfiles?fileinfo=1 Get binary package info: libzstd1=1.4.10+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/libzstd1/1.4.10+dfsg-1/binfiles?fileinfo=1 Get binary package info: linux-libc-dev=5.16.18-1 Binary URL: http://snapshot.notset.fr/mr/binary/linux-libc-dev/5.16.18-1/binfiles?fileinfo=1 Get binary package info: login=1:4.11.1+dfsg1-2 Binary URL: http://snapshot.notset.fr/mr/binary/login/1:4.11.1+dfsg1-2/binfiles?fileinfo=1 Get binary package info: lsb-base=11.1.0 Binary URL: http://snapshot.notset.fr/mr/binary/lsb-base/11.1.0/binfiles?fileinfo=1 Get binary package info: m4=1.4.18-5 Binary URL: http://snapshot.notset.fr/mr/binary/m4/1.4.18-5/binfiles?fileinfo=1 Get binary package info: make=4.3-4.1 Binary URL: http://snapshot.notset.fr/mr/binary/make/4.3-4.1/binfiles?fileinfo=1 Get binary package info: man-db=2.10.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/man-db/2.10.2-1/binfiles?fileinfo=1 Get binary package info: mawk=1.3.4.20200120-3+b1 Binary URL: http://snapshot.notset.fr/mr/binary/mawk/1.3.4.20200120-3+b1/binfiles?fileinfo=1 Get binary package info: media-types=7.1.0 Binary URL: http://snapshot.notset.fr/mr/binary/media-types/7.1.0/binfiles?fileinfo=1 Get binary package info: ncurses-base=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/ncurses-base/6.3-2/binfiles?fileinfo=1 Get binary package info: ncurses-bin=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/ncurses-bin/6.3-2/binfiles?fileinfo=1 Get binary package info: openssl=1.1.1n-1 Binary URL: http://snapshot.notset.fr/mr/binary/openssl/1.1.1n-1/binfiles?fileinfo=1 Get binary package info: passwd=1:4.11.1+dfsg1-2 Binary URL: http://snapshot.notset.fr/mr/binary/passwd/1:4.11.1+dfsg1-2/binfiles?fileinfo=1 Get binary package info: patch=2.7.6-7 Binary URL: http://snapshot.notset.fr/mr/binary/patch/2.7.6-7/binfiles?fileinfo=1 Get binary package info: perl=5.34.0-4 Binary URL: http://snapshot.notset.fr/mr/binary/perl/5.34.0-4/binfiles?fileinfo=1 Get binary package info: perl-base=5.34.0-4 Binary URL: http://snapshot.notset.fr/mr/binary/perl-base/5.34.0-4/binfiles?fileinfo=1 Get binary package info: perl-modules-5.34=5.34.0-4 Binary URL: http://snapshot.notset.fr/mr/binary/perl-modules-5.34/5.34.0-4/binfiles?fileinfo=1 Get binary package info: pkg-config=0.29.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/pkg-config/0.29.2-1/binfiles?fileinfo=1 Get binary package info: po-debconf=1.0.21+nmu1 Binary URL: http://snapshot.notset.fr/mr/binary/po-debconf/1.0.21+nmu1/binfiles?fileinfo=1 Get binary package info: procps=2:3.3.17-7+b1 Binary URL: http://snapshot.notset.fr/mr/binary/procps/2:3.3.17-7+b1/binfiles?fileinfo=1 Get binary package info: python3=3.10.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3/3.10.4-1/binfiles?fileinfo=1 Get binary package info: python3-all=3.10.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-all/3.10.4-1/binfiles?fileinfo=1 Get binary package info: python3-all-dev=3.10.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-all-dev/3.10.4-1/binfiles?fileinfo=1 Get binary package info: python3-dev=3.10.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-dev/3.10.4-1/binfiles?fileinfo=1 Get binary package info: python3-distutils=3.9.12-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-distutils/3.9.12-1/binfiles?fileinfo=1 Get binary package info: python3-lib2to3=3.9.12-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-lib2to3/3.9.12-1/binfiles?fileinfo=1 Get binary package info: python3-minimal=3.10.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-minimal/3.10.4-1/binfiles?fileinfo=1 Get binary package info: python3.10=3.10.4-3 Binary URL: http://snapshot.notset.fr/mr/binary/python3.10/3.10.4-3/binfiles?fileinfo=1 Get binary package info: python3.10-dev=3.10.4-3 Binary URL: http://snapshot.notset.fr/mr/binary/python3.10-dev/3.10.4-3/binfiles?fileinfo=1 Get binary package info: python3.10-minimal=3.10.4-3 Binary URL: http://snapshot.notset.fr/mr/binary/python3.10-minimal/3.10.4-3/binfiles?fileinfo=1 Get binary package info: python3.9=3.9.12-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3.9/3.9.12-1/binfiles?fileinfo=1 Get binary package info: python3.9-dev=3.9.12-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3.9-dev/3.9.12-1/binfiles?fileinfo=1 Get binary package info: python3.9-minimal=3.9.12-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3.9-minimal/3.9.12-1/binfiles?fileinfo=1 Get binary package info: rake=13.0.6-3 Binary URL: http://snapshot.notset.fr/mr/binary/rake/13.0.6-3/binfiles?fileinfo=1 Get binary package info: readline-common=8.1.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/readline-common/8.1.2-1/binfiles?fileinfo=1 Get binary package info: rpcsvc-proto=1.4.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/rpcsvc-proto/1.4.2-4/binfiles?fileinfo=1 Get binary package info: ruby=1:3.0+1 Binary URL: http://snapshot.notset.fr/mr/binary/ruby/1:3.0+1/binfiles?fileinfo=1 Get binary package info: ruby-net-telnet=0.1.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/ruby-net-telnet/0.1.1-2/binfiles?fileinfo=1 Get binary package info: ruby-rubygems=3.3.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/ruby-rubygems/3.3.5-2/binfiles?fileinfo=1 Get binary package info: ruby-xmlrpc=0.3.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/ruby-xmlrpc/0.3.2-1/binfiles?fileinfo=1 Get binary package info: ruby3.0=3.0.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/ruby3.0/3.0.3-1/binfiles?fileinfo=1 Get binary package info: rubygems-integration=1.18 Binary URL: http://snapshot.notset.fr/mr/binary/rubygems-integration/1.18/binfiles?fileinfo=1 Get binary package info: samtools=1.13-4 Binary URL: http://snapshot.notset.fr/mr/binary/samtools/1.13-4/binfiles?fileinfo=1 Get binary package info: sed=4.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/sed/4.8-1/binfiles?fileinfo=1 Get binary package info: sensible-utils=0.0.17 Binary URL: http://snapshot.notset.fr/mr/binary/sensible-utils/0.0.17/binfiles?fileinfo=1 Get binary package info: swig=4.0.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/swig/4.0.2-2/binfiles?fileinfo=1 Get binary package info: swig4.0=4.0.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/swig4.0/4.0.2-2/binfiles?fileinfo=1 Get binary package info: sysvinit-utils=3.01-1 Binary URL: http://snapshot.notset.fr/mr/binary/sysvinit-utils/3.01-1/binfiles?fileinfo=1 Get binary package info: tar=1.34+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/tar/1.34+dfsg-1/binfiles?fileinfo=1 Get binary package info: time=1.9-0.1 Binary URL: http://snapshot.notset.fr/mr/binary/time/1.9-0.1/binfiles?fileinfo=1 Get binary package info: tzdata=2022a-1 Binary URL: http://snapshot.notset.fr/mr/binary/tzdata/2022a-1/binfiles?fileinfo=1 Get binary package info: util-linux=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/util-linux/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: xz-utils=5.2.5-2.1 Binary URL: http://snapshot.notset.fr/mr/binary/xz-utils/5.2.5-2.1/binfiles?fileinfo=1 Get binary package info: yaggo=1.5.10-5 Binary URL: http://snapshot.notset.fr/mr/binary/yaggo/1.5.10-5/binfiles?fileinfo=1 Get binary package info: zlib1g=1:1.2.11.dfsg-4 Binary URL: http://snapshot.notset.fr/mr/binary/zlib1g/1:1.2.11.dfsg-4/binfiles?fileinfo=1 Get binary package info: zlib1g-dev=1:1.2.11.dfsg-4 Binary URL: http://snapshot.notset.fr/mr/binary/zlib1g-dev/1:1.2.11.dfsg-4/binfiles?fileinfo=1 Remaining packages to be found: 250 Timestamp source (33 packages): deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220318T025831Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220324T214913Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220327T025142Z/ bookworm main Remaining packages to be found: 7 Timestamp source (7 packages): deb http://snapshot.notset.fr/archive/debian/20220405T031327Z/ bookworm main New buildinfo file: /tmp/jellyfish-2.3.0-13o0pc35xi/jellyfish_2.3.0-13_amd64.buildinfo env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser:all=3.121 apt:amd64=2.4.5 autoconf:all=2.71-2 autoconf-archive:all=20210219-2.1 automake:all=1:1.16.5-1.3 autopoint:all=0.21-6 autotools-dev:all=20220109.1 base-files:amd64=12.2 base-passwd:amd64=3.5.52 bash:amd64=5.1-6 bc:amd64=1.07.1-3+b1 binutils:amd64=2.38-3 binutils-common:amd64=2.38-3 binutils-x86-64-linux-gnu:amd64=2.38-3 bsdextrautils:amd64=2.38-2 bsdutils:amd64=1:2.37.3-1+b1 build-essential:amd64=12.9 bzip2:amd64=1.0.8-5 ca-certificates:all=20211016 chrpath:amd64=0.16-2+b1 coreutils:amd64=8.32-4.1 cpp:amd64=4:11.2.0-2 cpp-11:amd64=11.2.0-19 d-shlibs:all=0.104 dash:amd64=0.5.11+git20210903+057cd650a4ed-8 debconf:all=1.5.79 debhelper:all=13.6 debian-archive-keyring:all=2021.1.1 debianutils:amd64=5.7-0.1 dh-autoreconf:all=20 dh-python:all=5.20220403 dh-strip-nondeterminism:all=1.13.0-1 diffutils:amd64=1:3.7-5 dos2unix:amd64=7.4.2-2 dpkg:amd64=1.21.7 dpkg-dev:all=1.21.7 dwz:amd64=0.14-1 file:amd64=1:5.41-3 findutils:amd64=4.9.0-2 g++:amd64=4:11.2.0-2 g++-11:amd64=11.2.0-19 gcc:amd64=4:11.2.0-2 gcc-11:amd64=11.2.0-19 gcc-11-base:amd64=11.2.0-19 gcc-12-base:amd64=12-20220319-1 gettext:amd64=0.21-6 gettext-base:amd64=0.21-6 gpgv:amd64=2.2.27-3+b1 grep:amd64=3.7-1 groff-base:amd64=1.22.4-8 gzip:amd64=1.12-1 hostname:amd64=3.23 init-system-helpers:all=1.62 intltool-debian:all=0.35.0+20060710.5 libacl1:amd64=2.3.1-1 libapt-pkg6.0:amd64=2.4.5 libarchive-zip-perl:all=1.68-1 libasan6:amd64=11.2.0-19 libatomic1:amd64=12-20220319-1 libattr1:amd64=1:2.5.1-1 libaudit-common:all=1:3.0.7-1 libaudit1:amd64=1:3.0.7-1+b1 libbinutils:amd64=2.38-3 libblkid1:amd64=2.37.3-1+b1 libbrotli1:amd64=1.0.9-2+b3 libbsd0:amd64=0.11.6-1 libbz2-1.0:amd64=1.0.8-5 libc-bin:amd64=2.33-7 libc-dev-bin:amd64=2.33-7 libc6:amd64=2.33-7 libc6-dev:amd64=2.33-7 libcap-ng0:amd64=0.7.9-2.2+b2 libcap2:amd64=1:2.44-1 libcc1-0:amd64=12-20220319-1 libcom-err2:amd64=1.46.5-2 libcrypt-dev:amd64=1:4.4.27-1.1 libcrypt1:amd64=1:4.4.27-1.1 libctf-nobfd0:amd64=2.38-3 libctf0:amd64=2.38-3 libcurl3-gnutls:amd64=7.82.0-2 libcurl4-gnutls-dev:amd64=7.82.0-2 libdb5.3:amd64=5.3.28+dfsg1-0.8 libdebconfclient0:amd64=0.261 libdebhelper-perl:all=13.6 libdeflate-dev:amd64=1.10-2 libdeflate0:amd64=1.10-2 libdpkg-perl:all=1.21.7 libedit2:amd64=3.1-20210910-1 libelf1:amd64=0.186-1 libexpat1:amd64=2.4.8-1 libexpat1-dev:amd64=2.4.8-1 libffi8:amd64=3.4.2-4 libfile-stripnondeterminism-perl:all=1.13.0-1 libgcc-11-dev:amd64=11.2.0-19 libgcc-s1:amd64=12-20220319-1 libgcrypt20:amd64=1.10.1-2 libgdbm-compat4:amd64=1.23-1 libgdbm6:amd64=1.23-1 libglib2.0-0:amd64=2.72.0-1+b1 libgmp10:amd64=2:6.2.1+dfsg-3 libgnutls30:amd64=3.7.3-4+b1 libgomp1:amd64=12-20220319-1 libgpg-error0:amd64=1.43-3 libgssapi-krb5-2:amd64=1.19.2-2+b1 libhogweed6:amd64=3.7.3-1 libhts-dev:amd64=1.13+ds-2 libhts3:amd64=1.13+ds-2 libhtscodecs2:amd64=1.2.1-1 libicu67:amd64=67.1-7 libidn2-0:amd64=2.3.2-2 libisl23:amd64=0.24-2 libitm1:amd64=12-20220319-1 libjs-jquery:all=3.6.0+dfsg+~3.5.13-1 libjs-sphinxdoc:all=4.5.0-1 libjs-underscore:all=1.13.2~dfsg-2 libk5crypto3:amd64=1.19.2-2+b1 libkeyutils1:amd64=1.6.1-3 libkrb5-3:amd64=1.19.2-2+b1 libkrb5support0:amd64=1.19.2-2+b1 libldap-2.5-0:amd64=2.5.11+dfsg-1 liblsan0:amd64=12-20220319-1 liblz4-1:amd64=1.9.3-2 liblzma-dev:amd64=5.2.5-2.1 liblzma5:amd64=5.2.5-2.1 libmagic-mgc:amd64=1:5.41-3 libmagic1:amd64=1:5.41-3 libmd0:amd64=1.0.4-1 libmount1:amd64=2.37.3-1+b1 libmpc3:amd64=1.2.1-2 libmpdec3:amd64=2.5.1-2 libmpfr6:amd64=4.1.0-3 libncurses6:amd64=6.3-2 libncursesw6:amd64=6.3-2 libnettle8:amd64=3.7.3-1 libnghttp2-14:amd64=1.43.0-1 libnsl-dev:amd64=1.3.0-2 libnsl2:amd64=1.3.0-2 libp11-kit0:amd64=0.24.0-6 libpam-modules:amd64=1.4.0-11 libpam-modules-bin:amd64=1.4.0-11 libpam-runtime:all=1.4.0-11 libpam0g:amd64=1.4.0-11 libpcre2-8-0:amd64=10.39-3 libpcre3:amd64=2:8.39-14 libperl5.34:amd64=5.34.0-4 libpipeline1:amd64=1.5.5-1 libprocps8:amd64=2:3.3.17-7+b1 libpsl5:amd64=0.21.0-1.2 libpython3-all-dev:amd64=3.10.4-1 libpython3-dev:amd64=3.10.4-1 libpython3-stdlib:amd64=3.10.4-1 libpython3.10:amd64=3.10.4-3 libpython3.10-dev:amd64=3.10.4-3 libpython3.10-minimal:amd64=3.10.4-3 libpython3.10-stdlib:amd64=3.10.4-3 libpython3.9:amd64=3.9.12-1 libpython3.9-dev:amd64=3.9.12-1 libpython3.9-minimal:amd64=3.9.12-1 libpython3.9-stdlib:amd64=3.9.12-1 libquadmath0:amd64=12-20220319-1 libreadline8:amd64=8.1.2-1 librtmp1:amd64=2.4+20151223.gitfa8646d.1-2+b2 libruby3.0:amd64=3.0.3-1 libsasl2-2:amd64=2.1.28+dfsg-2+b1 libsasl2-modules-db:amd64=2.1.28+dfsg-2+b1 libseccomp2:amd64=2.5.3-2 libselinux1:amd64=3.3-1+b2 libsemanage-common:all=3.3-1 libsemanage2:amd64=3.3-1+b2 libsepol2:amd64=3.3-1 libsigsegv2:amd64=2.14-1 libsmartcols1:amd64=2.38-2 libsqlite3-0:amd64=3.38.2-1 libssh2-1:amd64=1.10.0-3 libssl1.1:amd64=1.1.1n-1 libstdc++-11-dev:amd64=11.2.0-19 libstdc++6:amd64=12-20220319-1 libsub-override-perl:all=0.09-2 libsystemd0:amd64=250.4-1 libtasn1-6:amd64=4.18.0-4 libtinfo6:amd64=6.3-2 libtirpc-common:all=1.3.2-2 libtirpc-dev:amd64=1.3.2-2 libtirpc3:amd64=1.3.2-2 libtool:all=2.4.7-3 libtsan0:amd64=11.2.0-19 libubsan1:amd64=12-20220319-1 libuchardet0:amd64=0.0.7-1 libudev1:amd64=250.4-1 libunistring2:amd64=1.0-1 libuuid1:amd64=2.37.3-1+b1 libxml2:amd64=2.9.13+dfsg-1 libxxhash0:amd64=0.8.1-1 libyaml-0-2:amd64=0.2.2-1 libzstd1:amd64=1.4.10+dfsg-1 linux-libc-dev:amd64=5.16.18-1 login:amd64=1:4.11.1+dfsg1-2 lsb-base:all=11.1.0 m4:amd64=1.4.18-5 make:amd64=4.3-4.1 man-db:amd64=2.10.2-1 mawk:amd64=1.3.4.20200120-3+b1 media-types:all=7.1.0 ncurses-base:all=6.3-2 ncurses-bin:amd64=6.3-2 openssl:amd64=1.1.1n-1 passwd:amd64=1:4.11.1+dfsg1-2 patch:amd64=2.7.6-7 perl:amd64=5.34.0-4 perl-base:amd64=5.34.0-4 perl-modules-5.34:all=5.34.0-4 pkg-config:amd64=0.29.2-1 po-debconf:all=1.0.21+nmu1 procps:amd64=2:3.3.17-7+b1 python3:amd64=3.10.4-1 python3-all:amd64=3.10.4-1 python3-all-dev:amd64=3.10.4-1 python3-dev:amd64=3.10.4-1 python3-distutils:all=3.9.12-1 python3-lib2to3:all=3.9.12-1 python3-minimal:amd64=3.10.4-1 python3.10:amd64=3.10.4-3 python3.10-dev:amd64=3.10.4-3 python3.10-minimal:amd64=3.10.4-3 python3.9:amd64=3.9.12-1 python3.9-dev:amd64=3.9.12-1 python3.9-minimal:amd64=3.9.12-1 rake:all=13.0.6-3 readline-common:all=8.1.2-1 rpcsvc-proto:amd64=1.4.2-4 ruby:amd64=1:3.0+1 ruby-net-telnet:all=0.1.1-2 ruby-rubygems:all=3.3.5-2 ruby-xmlrpc:all=0.3.2-1 ruby3.0:amd64=3.0.3-1 rubygems-integration:all=1.18 samtools:amd64=1.13-4 sed:amd64=4.8-1 sensible-utils:all=0.0.17 swig:all=4.0.2-2 swig4.0:amd64=4.0.2-2 sysvinit-utils:amd64=3.01-1 tar:amd64=1.34+dfsg-1 time:amd64=1.9-0.1 tzdata:all=2022a-1 util-linux:amd64=2.37.3-1+b1 xz-utils:amd64=5.2.5-2.1 yaggo:all=1.5.10-5 zlib1g:amd64=1:1.2.11.dfsg-4 zlib1g-dev:amd64=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220413T094333Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20220413T094333Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220405T031327Z/ bookworm main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d jellyfish=2.3.0-13 && mkdir -p /build/jellyfish-YHqIap && dpkg-source --no-check -x /*.dsc /build/jellyfish-YHqIap/jellyfish-2.3.0 && chown -R builduser:builduser /build/jellyfish-YHqIap" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/jellyfish-YHqIap/jellyfish-2.3.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1649834889" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/jellyfish-YHqIap /tmp/jellyfish-2.3.0-13o0pc35xi bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220224T210146Z bookworm main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.qC83fO4rf6 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.qC83fO4rf6 Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220224T210146Z bookworm/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220224T210146Z bookworm/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (1031 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4693 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220413T094333Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20220413T094333Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220405T031327Z/ bookworm main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.qC83fO4rf6 Get:1 http://snapshot.notset.fr/archive/debian/20220413T094333Z unstable InRelease [165 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220405T031327Z bookworm InRelease [130 kB] Ign:4 http://snapshot.notset.fr/archive/debian/20220413T094333Z unstable/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220413T094333Z unstable/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220413T094333Z unstable/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220413T094333Z unstable/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220413T094333Z unstable/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220413T094333Z unstable/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220413T094333Z unstable/main Sources [12.9 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220413T094333Z unstable/main amd64 Packages [12.4 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:7 http://snapshot.notset.fr/archive/debian/20220405T031327Z bookworm/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:7 http://snapshot.notset.fr/archive/debian/20220405T031327Z bookworm/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:7 http://snapshot.notset.fr/archive/debian/20220405T031327Z bookworm/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Get:7 http://snapshot.notset.fr/archive/debian/20220405T031327Z bookworm/main amd64 Packages [11.4 MB] Fetched 48.1 MB in 39s (1225 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.qC83fO4rf6 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d jellyfish=2.3.0-13 && mkdir -p /build/jellyfish-YHqIap && dpkg-source --no-check -x /*.dsc /build/jellyfish-YHqIap/jellyfish-2.3.0 && chown -R builduser:builduser /build/jellyfish-YHqIap"' exec /tmp/mmdebstrap.qC83fO4rf6 Reading package lists... NOTICE: 'jellyfish' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/jellyfish.git Please use: git clone https://salsa.debian.org/med-team/jellyfish.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 697 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220413T094333Z unstable/main jellyfish 2.3.0-13 (dsc) [3224 B] Get:2 http://snapshot.notset.fr/archive/debian/20220413T094333Z unstable/main jellyfish 2.3.0-13 (tar) [679 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220413T094333Z unstable/main jellyfish 2.3.0-13 (diff) [14.9 kB] Fetched 697 kB in 1s (1219 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'jellyfish_2.3.0-13.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting jellyfish in /build/jellyfish-YHqIap/jellyfish-2.3.0 dpkg-source: info: unpacking jellyfish_2.3.0.orig.tar.gz dpkg-source: info: unpacking jellyfish_2.3.0-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying manpage_whatis_entry.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying portability.patch dpkg-source: info: applying fix_replacement_of_-L_option.patch dpkg-source: info: applying test_needs_bash dpkg-source: info: applying python3 dpkg-source: info: applying fix-32-bit.patch dpkg-source: info: applying fix-autoreconf.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/jellyfish-YHqIap/jellyfish-2.3.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1649834889" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.qC83fO4rf6 dpkg-buildpackage: info: source package jellyfish dpkg-buildpackage: info: source version 2.3.0-13 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 debian/rules override_dh_clean make[1]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' dh_clean if [ -d debian/tmp_save_tests ] ; then \ mv debian/tmp_save_tests/* tests ; \ rmdir debian/tmp_save_tests ; \ fi rm -f tests/compat.sh rm -f swig/python/jellyfish* # swig/python/dna_jellyfish.py rm -f swig/perl5/blib/arch/auto/jellyfish/jellyfish.so rm -f swig/perl5/blib/bin/.exists rm -f swig/perl5/blib/lib/.exists rm -f swig/perl5/blib/lib/auto/jellyfish/.exists rm -f swig/perl5/blib/man1/.exists rm -f swig/perl5/blib/man3/.exists rm -f swig/perl5/blib/script/.exists rm -f swig/perl5/jellyfish.bs rm -f swig/perl5/pm_to_blib rm -rf swig/perl5/MYMETA.json swig/perl5/MYMETA.yml swig/perl5/Makefile swig/perl5/blib/ make[1]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' debian/rules binary-arch dh binary-arch --with python3 debian/rules override_dh_update_autotools_config make[1]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' # use python configuration from autoconf-archive mv m4/m4-ax_python_devel.m4 /tmp dh_update_autotools_config make[1]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:8: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:8: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:8: the top level configure.ac:65: warning: The macro `AC_TRY_RUN' is obsolete. configure.ac:65: You should run autoupdate. ./lib/autoconf/general.m4:2997: AC_TRY_RUN is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... m4/m4-ax_ext.m4:49: AX_EXT is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... configure.ac:65: the top level configure.ac:107: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:107: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:107: the top level configure.ac:118: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:118: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:118: the top level configure.ac:121: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:121: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:121: the top level configure.ac:124: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:124: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:124: the top level configure.ac:127: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:127: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:127: the top level configure.ac:131: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:131: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:131: the top level configure.ac:135: warning: The macro `SWIG_ENABLE_CXX' is obsolete. configure.ac:135: You should run autoupdate. m4/m4-ax_swig_enable_cxx.m4:48: SWIG_ENABLE_CXX is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... configure.ac:135: the top level configure.ac:145: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:145: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:145: the top level configure.ac:8: installing './compile' configure.ac:2: installing './config.guess' configure.ac:2: installing './config.sub' configure.ac:4: installing './install-sh' configure.ac:4: installing './missing' Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' dh_auto_configure -- --enable-swig --enable-perl-binding --enable-htslib --enable-python-binding PYTHON=/usr/bin/python3 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-swig --enable-perl-binding --enable-htslib --enable-python-binding PYTHON=/usr/bin/python3 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for shared library run path origin... done checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking 32-bit host C ABI... no checking for ELF binary format... yes checking for the common suffixes of directories in the library search path... lib,lib,lib checking for htslib... yes checking for samtools... /usr/bin/samtools checking for unix2dos... /usr/bin/unix2dos checking for md5sum... md5sum checking for yaggo... /usr/bin/yaggo checking for x86 cpuid output... unknown checking for x86-AVX xgetbv output... unknown checking for x86 cpuid 0x00000000 output... d:756e6547:6c65746e:49656e69 checking for x86 cpuid 0x80000000 output... 80000008:0:0:0 checking for x86 cpuid 0x00000001 output... 406f1:4400800:fffa3203:1fcbfbff checking for x86 cpuid 0x00000007 output... 0:1c27ab:0:9c000400 checking for x86 cpuid 0x80000001 output... 0:0:121:2c100800 checking for x86-AVX xgetbv 0x00000000 output... 7:0 checking whether RDRND is supported by the processor... yes checking whether RDRND is supported by the processor and OS... yes checking whether C++ compiler accepts -mrdrnd... yes checking whether BMI1 is supported by the processor... yes checking whether BMI1 is supported by the processor and OS... yes checking whether C++ compiler accepts -mbmi... yes checking whether BMI2 is supported by the processor... yes checking whether BMI2 is supported by the processor and OS... yes checking whether C++ compiler accepts -mbmi2... yes checking whether ADX is supported by the processor... yes checking whether ADX is supported by the processor and OS... yes checking whether C++ compiler accepts -madx... yes checking whether MPX is supported by the processor... no checking whether PREFETCHWT1 is supported by the processor... no checking whether ABM is supported by the processor... yes checking whether ABM is supported by the processor and OS... yes checking whether C++ compiler accepts -mabm... yes checking whether MMX is supported by the processor... yes checking whether MMX is supported by the processor and OS... yes checking whether C++ compiler accepts -mmmx... yes checking whether SSE is supported by the processor... yes checking whether SSE is supported by the processor and OS... yes checking whether C++ compiler accepts -msse... yes checking whether SSE2 is supported by the processor... yes checking whether SSE2 is supported by the processor and OS... yes checking whether C++ compiler accepts -msse2... yes checking whether SSE3 is supported by the processor... yes checking whether SSE3 is supported by the processor and OS... yes checking whether C++ compiler accepts -msse3... yes checking whether SSSE3 is supported by the processor... yes checking whether SSSE3 is supported by the processor and OS... yes checking whether C++ compiler accepts -mssse3... yes checking whether SSE4.1 is supported by the processor... yes checking whether SSE4.1 is supported by the processor and OS... yes checking whether C++ compiler accepts -msse4.1... yes checking whether SSE4.2 is supported by the processor... yes checking whether SSE4.2 is supported by the processor and OS... yes checking whether C++ compiler accepts -msse4.2... yes checking whether SSE4a is supported by the processor... no checking whether SHA is supported by the processor... no checking whether AES is supported by the processor... yes checking whether AES is supported by the processor and OS... yes checking whether C++ compiler accepts -maes... yes checking whether AVX is supported by the processor... yes checking whether AVX is supported by the processor and OS... yes checking whether C++ compiler accepts -mavx... yes checking whether FMA3 is supported by the processor... yes checking whether FMA3 is supported by the processor and OS... yes checking whether C++ compiler accepts -mfma... yes checking whether FMA4 is supported by the processor... no checking whether XOP is supported by the processor... no checking whether AVX2 is supported by the processor... yes checking whether AVX2 is supported by the processor and OS... yes checking whether C++ compiler accepts -mavx2... yes checking whether AVX512-F is supported by the processor... no checking whether AVX512-CD is supported by the processor... no checking whether AVX512-PF is supported by the processor... no checking whether AVX512-ER is supported by the processor... no checking whether AVX512-VL is supported by the processor... no checking whether AVX512-BW is supported by the processor... no checking whether AVX512-DQ is supported by the processor... no checking whether AVX512-IFMA is supported by the processor... no checking whether AVX512-VBMI is supported by the processor... no checking for __int128... yes checking for std::numeric_limits<__int128>... yes checking for _NSGetExecutablePath... no checking for execinfo.h... yes checking for ext/stdio_filebuf.h... yes checking for sys/syscall.h... yes checking for siginfo_t.si_int... yes checking for swig... /usr/bin/swig checking SWIG version... 4.0.2 checking for SWIG library... /usr/share/swig4.0 checking for python... /usr/bin/python3 checking for a version of Python >= '2.1.0'... yes checking for the distutils Python package... yes checking for Python include path... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -I/usr/include/python3.10 checking for Python library path... :4: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :4: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead :3: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :3: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead :2: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :2: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -L/usr/lib/x86_64-linux-gnu -lpython3.10 checking for Python site-packages path... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead /usr/lib/python3/dist-packages checking python extra libraries... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -lcrypt -lpthread -ldl -lutil -lm -lm checking python extra linking flags... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... yes checking for perl... /usr/bin/perl checking for Perl prefix... /usr checking for Perl extension include path... /usr/lib/x86_64-linux-gnu/perl/5.34/CORE checking for Perl extension target directory... /usr/lib/perl/5.34.0 checking for Perl extensions C preprocessor flags... -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include checking for Perl extensions linker flags... -shared -L/usr/local/lib -fstack-protector-strong checking for posix_memalign... yes checking for aligned_alloc... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating compat.sh config.status: creating jellyfish-2.0.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_configure --sourcedirectory=swig/perl5 cd swig/perl5 && /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lpthread" -I/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/include/jellyfish-2.3.0 -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu -ljellyfish-2.0 -lpthread -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu Warning (mostly harmless): No library found for -ljellyfish-2.0 Generating a Unix-style Makefile Writing Makefile for jellyfish Writing MYMETA.yml and MYMETA.json dh_auto_configure --sourcedirectory=swig/python --buildsystem=pybuild I: pybuild base:239: python3.9 setup.py config running config I: pybuild base:239: python3.10 setup.py config /build/jellyfish-YHqIap/jellyfish-2.3.0/swig/python/setup.py:12: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running config mv /tmp/m4-ax_python_devel.m4 m4 make[1]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' mkdir -p debian/tmp_save_tests cp -a tests/* debian/tmp_save_tests dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all bin/fastq2sam make -j1 all bin/generate_sequence bin/test_all bin/fastq2sam make[2]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' /usr/bin/yaggo --license ./header-license -o sub_commands/count_main_cmdline.hpp sub_commands/count_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/info_main_cmdline.hpp sub_commands/info_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/dump_main_cmdline.hpp sub_commands/dump_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/histo_main_cmdline.hpp sub_commands/histo_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/stats_main_cmdline.hpp sub_commands/stats_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/merge_main_cmdline.hpp sub_commands/merge_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/bc_main_cmdline.hpp sub_commands/bc_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/query_main_cmdline.hpp sub_commands/query_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/cite_main_cmdline.hpp sub_commands/cite_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/mem_main_cmdline.hpp sub_commands/mem_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o jellyfish/generate_sequence_cmdline.hpp jellyfish/generate_sequence_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o jellyfish/fastq2sam_cmdline.hpp jellyfish/fastq2sam_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o unit_tests/test_main_cmdline.hpp unit_tests/test_main_cmdline.yaggo /usr/bin/swig -c++ -python -I./../include -o swig/python/swig_wrap.cpp swig/jellyfish.i /usr/bin/swig -c++ -perl5 -I./../include -o swig/perl5/swig_wrap.cpp swig/jellyfish.i make all-am make[3]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/jellyfish.o sub_commands/jellyfish.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/count_main.o sub_commands/count_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/info_main.o sub_commands/info_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/dump_main.o sub_commands/dump_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/histo_main.o sub_commands/histo_main.cc g++ -DHAVE_CONFIG_H -I. -Wall 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-I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_dna_bloom_counter.o `test -f 'unit_tests/test_mer_dna_bloom_counter.cc' || echo './'`unit_tests/test_mer_dna_bloom_counter.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_whole_sequence_parser.o `test -f 'unit_tests/test_whole_sequence_parser.cc' || echo './'`unit_tests/test_whole_sequence_parser.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_allocators_mmap.o `test -f 'unit_tests/test_allocators_mmap.cc' || echo './'`unit_tests/test_allocators_mmap.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_cooperative_pool2.o `test -f 'unit_tests/test_cooperative_pool2.cc' || echo './'`unit_tests/test_cooperative_pool2.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_generator_manager.o `test -f 'unit_tests/test_generator_manager.cc' || echo './'`unit_tests/test_generator_manager.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_atomic_bits_array.o `test -f 'unit_tests/test_atomic_bits_array.cc' || echo './'`unit_tests/test_atomic_bits_array.cc g++ -DHAVE_CONFIG_H -I. -Wall 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[-Wmaybe-uninitialized] 7485 | StackLowerThanAddress(&dummy, &result); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ unit_tests/gtest/src/gtest-all.cc:7477:6: note: by argument 1 of type ‘const void*’ to ‘void testing::internal::StackLowerThanAddress(const void*, bool*)’ declared here 7477 | void StackLowerThanAddress(const void* ptr, bool* result) { | ^~~~~~~~~~~~~~~~~~~~~ unit_tests/gtest/src/gtest-all.cc:7483:7: note: ‘dummy’ declared here 7483 | int dummy; | ^~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c unit_tests/gtest/src/gtest-all.cc -o unit_tests/gtest/src/libgtest_la-gtest-all.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 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-R/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu -Wl,-z,relro -Wl,-z,now -lpthread -o bin/test_all unit_tests/bin_test_all-test_main.o unit_tests/bin_test_all-test_misc.o unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_rectangular_binary_matrix.o unit_tests/bin_test_all-test_mer_dna.o unit_tests/bin_test_all-test_large_hash_array.o unit_tests/bin_test_all-test_mer_overlap_sequence_parser.o unit_tests/bin_test_all-test_file_header.o unit_tests/bin_test_all-test_mer_iterator.o unit_tests/bin_test_all-test_hash_counter.o unit_tests/bin_test_all-test_mer_heap.o unit_tests/bin_test_all-test_stream_iterator.o unit_tests/bin_test_all-test_token_ring.o unit_tests/bin_test_all-test_text_dumper.o unit_tests/bin_test_all-test_dumpers.o unit_tests/bin_test_all-test_mapped_file.o unit_tests/bin_test_all-test_int128.o unit_tests/bin_test_all-test_mer_dna_bloom_counter.o unit_tests/bin_test_all-test_whole_sequence_parser.o unit_tests/bin_test_all-test_allocators_mmap.o unit_tests/bin_test_all-test_cooperative_pool2.o unit_tests/bin_test_all-test_generator_manager.o unit_tests/bin_test_all-test_atomic_bits_array.o unit_tests/bin_test_all-test_stdio_filebuf.o jellyfish/bin_test_all-backtrace.o libgtest.la libjellyfish-2.0.la libtool: link: g++ -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/test_all unit_tests/bin_test_all-test_main.o unit_tests/bin_test_all-test_misc.o unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_rectangular_binary_matrix.o unit_tests/bin_test_all-test_mer_dna.o unit_tests/bin_test_all-test_large_hash_array.o unit_tests/bin_test_all-test_mer_overlap_sequence_parser.o unit_tests/bin_test_all-test_file_header.o unit_tests/bin_test_all-test_mer_iterator.o unit_tests/bin_test_all-test_hash_counter.o unit_tests/bin_test_all-test_mer_heap.o unit_tests/bin_test_all-test_stream_iterator.o unit_tests/bin_test_all-test_token_ring.o unit_tests/bin_test_all-test_text_dumper.o unit_tests/bin_test_all-test_dumpers.o unit_tests/bin_test_all-test_mapped_file.o unit_tests/bin_test_all-test_int128.o unit_tests/bin_test_all-test_mer_dna_bloom_counter.o unit_tests/bin_test_all-test_whole_sequence_parser.o unit_tests/bin_test_all-test_allocators_mmap.o unit_tests/bin_test_all-test_cooperative_pool2.o unit_tests/bin_test_all-test_generator_manager.o unit_tests/bin_test_all-test_atomic_bits_array.o unit_tests/bin_test_all-test_stdio_filebuf.o jellyfish/bin_test_all-backtrace.o -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu ./.libs/libgtest.a -lhts -lpthread ./.libs/libjellyfish-2.0.so -pthread -Wl,-rpath -Wl,/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/fastq2sam.o jellyfish/fastq2sam.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -pthread -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu -lhts -R/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu -Wl,-z,relro -Wl,-z,now -lpthread -o bin/fastq2sam jellyfish/fastq2sam.o libjellyfish-2.0.la libtool: link: g++ -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/fastq2sam jellyfish/fastq2sam.o -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu -lhts -lpthread ./.libs/libjellyfish-2.0.so -pthread -Wl,-rpath -Wl,/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu make[2]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' dh_auto_install -- install-data make -j1 install DESTDIR=/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp AM_UPDATE_INFO_DIR=no install-data make[2]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' make install-am make[3]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' make[4]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so.2.0.0 libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; }) libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; }) libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.la libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a libtool: install: chmod 644 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a libtool: install: ranlib /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c bin/jellyfish '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/bin' libtool: warning: 'libjellyfish-2.0.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c bin/.libs/jellyfish /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/bin/jellyfish /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish' /usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish' /usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'doc/jellyfish.man' '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/share/man/man1/jellyfish.1' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' libtool: warning: relinking 'swig/perl5/jellyfish.la' libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0; /bin/bash "/build/jellyfish-YHqIap/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.34.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; }) libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; }) libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.la libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.a libtool: install: chmod 644 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.a libtool: install: ranlib /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.a libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.34.0' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' /usr/bin/install -c swig/perl5/jellyfish.pm '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 jellyfish-2.0.pc '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' libtool: warning: relinking 'swig/python/_dna_jellyfish.la' libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0; /bin/bash "/build/jellyfish-YHqIap/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3/dist-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; }) libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; }) libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.la libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.a libtool: install: chmod 644 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.a libtool: install: ranlib /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.a libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages/dna_jellyfish' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' /usr/bin/install -c swig/python/__init__.pyc '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' make[4]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' make[3]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish' /usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish' /usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'doc/jellyfish.man' '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/share/man/man1/jellyfish.1' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so.2.0.0 libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; }) libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; }) libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.la libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a libtool: install: chmod 644 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a libtool: install: ranlib /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' libtool: warning: relinking 'swig/perl5/jellyfish.la' libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0; /bin/bash "/build/jellyfish-YHqIap/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.34.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; }) libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; }) libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.la libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.a libtool: install: chmod 644 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.a libtool: install: ranlib /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.a libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.34.0' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' /usr/bin/install -c swig/perl5/jellyfish.pm '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 jellyfish-2.0.pc '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' libtool: warning: relinking 'swig/python/_dna_jellyfish.la' libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0; /bin/bash "/build/jellyfish-YHqIap/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3/dist-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; }) libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; }) libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.la libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.a libtool: install: chmod 644 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.a libtool: install: ranlib /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.a libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages/dna_jellyfish' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' /usr/bin/install -c swig/python/__init__.pyc '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' make[2]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' dh_auto_build --sourcedirectory=swig/perl5 cd swig/perl5 && make -j10 make[2]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0/swig/perl5' Running Mkbootstrap for jellyfish () g++ -c -std=c++0x -I/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/include/jellyfish-2.3.0 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.0.1\" -DXS_VERSION=\"0.0.1\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.34/CORE" swig_wrap.cpp chmod 644 "jellyfish.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- jellyfish.bs blib/arch/auto/jellyfish/jellyfish.bs 644 rm -f blib/arch/auto/jellyfish/jellyfish.so x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lpthread -shared -L/usr/local/lib -fstack-protector-strong swig_wrap.o -o blib/arch/auto/jellyfish/jellyfish.so \ -lpthread \ chmod 755 blib/arch/auto/jellyfish/jellyfish.so make[2]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0/swig/perl5' dh_auto_build --sourcedirectory=swig/python --buildsystem=pybuild I: pybuild base:239: /usr/bin/python3.9 setup.py build build_ext -L/build/jellyfish-YHqIap/jellyfish-2.3.0/.libs running build running build_py copying dna_jellyfish.py -> /build/jellyfish-YHqIap/jellyfish-2.3.0/.pybuild/cpython3_3.9_dna_jellyfish/build running build_ext building '_dna_jellyfish' extension creating build creating build/temp.linux-x86_64-3.9 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/include/jellyfish-2.3.0 -I/usr/include/python3.9 -c swig_wrap.cpp -o build/temp.linux-x86_64-3.9/swig_wrap.o -std=c++0x x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -lpthread -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/swig_wrap.o -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu -L/build/jellyfish-YHqIap/jellyfish-2.3.0/.libs -ljellyfish-2.0 -lpthread -o /build/jellyfish-YHqIap/jellyfish-2.3.0/.pybuild/cpython3_3.9_dna_jellyfish/build/_dna_jellyfish.cpython-39-x86_64-linux-gnu.so -Wl,-rpath,/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu I: pybuild base:239: /usr/bin/python3 setup.py build build_ext -L/build/jellyfish-YHqIap/jellyfish-2.3.0/.libs /build/jellyfish-YHqIap/jellyfish-2.3.0/swig/python/setup.py:12: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running build running build_py copying dna_jellyfish.py -> /build/jellyfish-YHqIap/jellyfish-2.3.0/.pybuild/cpython3_3.10_dna_jellyfish/build running build_ext building '_dna_jellyfish' extension creating build/temp.linux-x86_64-3.10 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/include/jellyfish-2.3.0 -I/usr/include/python3.10 -c swig_wrap.cpp -o build/temp.linux-x86_64-3.10/swig_wrap.o -std=c++0x x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -lpthread -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/swig_wrap.o -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu -L/build/jellyfish-YHqIap/jellyfish-2.3.0/.libs -ljellyfish-2.0 -lpthread -o /build/jellyfish-YHqIap/jellyfish-2.3.0/.pybuild/cpython3_3.10_dna_jellyfish/build/_dna_jellyfish.cpython-310-x86_64-linux-gnu.so -Wl,-rpath,/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp//usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' chrpath --delete bin/.libs/* dh_auto_install -- install-data make -j1 install DESTDIR=/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp AM_UPDATE_INFO_DIR=no install-data make[2]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' make install-am make[3]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' make[4]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so.2.0.0 libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; }) libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; }) libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.la libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a libtool: install: chmod 644 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a libtool: install: ranlib /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c bin/jellyfish '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/bin' libtool: warning: 'libjellyfish-2.0.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c bin/.libs/jellyfish /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/bin/jellyfish /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish' /usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish' /usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'doc/jellyfish.man' '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/share/man/man1/jellyfish.1' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' libtool: warning: relinking 'swig/perl5/jellyfish.la' libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0; /bin/bash "/build/jellyfish-YHqIap/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.34.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; }) libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; }) libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.la libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.a libtool: install: chmod 644 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.a libtool: install: ranlib /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.a libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.34.0' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' /usr/bin/install -c swig/perl5/jellyfish.pm '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 jellyfish-2.0.pc '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' libtool: warning: relinking 'swig/python/_dna_jellyfish.la' libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0; /bin/bash "/build/jellyfish-YHqIap/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3/dist-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; }) libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; }) libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.la libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.a libtool: install: chmod 644 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.a libtool: install: ranlib /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.a libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages/dna_jellyfish' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' /usr/bin/install -c swig/python/__init__.pyc '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' make[4]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' make[3]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish' /usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish' /usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/include/jellyfish-2.3.0/jellyfish' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'doc/jellyfish.man' '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/share/man/man1/jellyfish.1' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so.2.0.0 libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; }) libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; }) libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.la libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a libtool: install: chmod 644 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a libtool: install: ranlib /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' libtool: warning: relinking 'swig/perl5/jellyfish.la' libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0; /bin/bash "/build/jellyfish-YHqIap/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.34.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; }) libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; }) libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.la libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.a libtool: install: chmod 644 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.a libtool: install: ranlib /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0/jellyfish.a libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.34.0' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' /usr/bin/install -c swig/perl5/jellyfish.pm '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/perl/5.34.0' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 jellyfish-2.0.pc '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/python/_dna_jellyfish.la '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' libtool: warning: relinking 'swig/python/_dna_jellyfish.la' libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0; /bin/bash "/build/jellyfish-YHqIap/jellyfish-2.3.0/libtool" --tag CXX --mode=relink g++ -Werror -std=c++11 -g -O2 -ffile-prefix-map=/build/jellyfish-YHqIap/jellyfish-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3/dist-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o -lpthread -L/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0 libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; }) libtool: install: (cd /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; }) libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.la libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.a libtool: install: chmod 644 /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.a libtool: install: ranlib /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish/_dna_jellyfish.a libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages/dna_jellyfish' /bin/mkdir -p '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' /usr/bin/install -c swig/python/__init__.pyc '/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/python3/dist-packages/dna_jellyfish' make[2]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' dh_auto_install --sourcedirectory=swig/python --buildsystem=pybuild I: pybuild base:239: /usr/bin/python3.9 setup.py install --root /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish running install running build running build_py running build_ext running install_lib creating /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish creating /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr creating /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib creating /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib/python3.9 creating /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib/python3.9/dist-packages copying /build/jellyfish-YHqIap/jellyfish-2.3.0/.pybuild/cpython3_3.9_dna_jellyfish/build/dna_jellyfish.py -> /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib/python3.9/dist-packages copying /build/jellyfish-YHqIap/jellyfish-2.3.0/.pybuild/cpython3_3.9_dna_jellyfish/build/_dna_jellyfish.cpython-39-x86_64-linux-gnu.so -> /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib/python3.9/dist-packages byte-compiling /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib/python3.9/dist-packages/dna_jellyfish.py to dna_jellyfish.cpython-39.pyc running install_egg_info Writing /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib/python3.9/dist-packages/dna_jellyfish-0.0.1.egg-info I: pybuild base:239: /usr/bin/python3 setup.py install --root /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish /build/jellyfish-YHqIap/jellyfish-2.3.0/swig/python/setup.py:12: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running install running build running build_py running build_ext running install_lib creating /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib/python3.10 creating /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib/python3.10/dist-packages copying /build/jellyfish-YHqIap/jellyfish-2.3.0/.pybuild/cpython3_3.10_dna_jellyfish/build/dna_jellyfish.py -> /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib/python3.10/dist-packages copying /build/jellyfish-YHqIap/jellyfish-2.3.0/.pybuild/cpython3_3.10_dna_jellyfish/build/_dna_jellyfish.cpython-310-x86_64-linux-gnu.so -> /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib/python3.10/dist-packages byte-compiling /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib/python3.10/dist-packages/dna_jellyfish.py to dna_jellyfish.cpython-310.pyc running install_egg_info Writing /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/python3-dna-jellyfish/usr/lib/python3.10/dist-packages/dna_jellyfish-0.0.1.egg-info dh_auto_install --sourcedirectory=swig/perl5 cd swig/perl5 && make -j10 install DESTDIR=/build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0/swig/perl5' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- jellyfish.bs blib/arch/auto/jellyfish/jellyfish.bs 644 Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/jellyfish/jellyfish.so make[2]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0/swig/perl5' ls -l debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so -r-xr-xr-x 1 builduser builduser 1136608 Apr 13 16:53 debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/jellyfish/jellyfish.so if [ ! -e debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so ] ; then sleep 1; fi chmod +w debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so chrpath --delete debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "debian/tmp/usr/include/jellyfish*/jellyfish/*.hpp" usr/include/jellyfish \ --movedev "debian/tmp/usr/include/jellyfish*/jellyfish/*.h" usr/include/jellyfish \ --movedev config.h usr/include/jellyfish \ debian/tmp/usr/lib/*/libjellyfish-*.so Library package automatic movement utility set -e install -d -m 755 debian/libjellyfish-2.0-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libjellyfish-2.0-2/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a debian/libjellyfish-2.0-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.la debian/libjellyfish-2.0-dev/usr/lib/x86_64-linux-gnu || true mv debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so debian/libjellyfish-2.0-dev/usr/lib/x86_64-linux-gnu mv /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so.2 debian/libjellyfish-2.0-2/usr/lib/x86_64-linux-gnu mv /build/jellyfish-YHqIap/jellyfish-2.3.0/debian/tmp/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so.2.0.0 debian/libjellyfish-2.0-2/usr/lib/x86_64-linux-gnu PKGDEV=libjellyfish-2.0-dev PKGSHL=libjellyfish-2.0-2 install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish mv debian/tmp/usr/include/jellyfish*/jellyfish/*.hpp debian/libjellyfish-2.0-dev/usr/include/jellyfish install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish mv debian/tmp/usr/include/jellyfish*/jellyfish/*.h debian/libjellyfish-2.0-dev/usr/include/jellyfish install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish mv config.h debian/libjellyfish-2.0-dev/usr/include/jellyfish sed -i "/dependency_libs/ s/'.*'/''/" ./debian/libjellyfish-2.0-dev/usr/lib/x86_64-linux-gnu/*.la chrpath --delete debian/*/usr/lib/python*/dist-packages/_dna_jellyfish*.so make[1]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_python3 -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a debian/rules override_dh_missing make[1]: Entering directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' # Python files are just installed rm -rf debian/tmp/usr/lib/python3/dist-packages # Necessary Perl files are just installed rm -rf debian/tmp/usr/lib/perl/5.* dh_missing make[1]: Leaving directory '/build/jellyfish-YHqIap/jellyfish-2.3.0' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package python3-dna-jellyfish: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-dna-jellyfish: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-dna-jellyfish: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-dna-jellyfish: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'jellyfish' in '../jellyfish_2.3.0-13_amd64.deb'. dpkg-deb: building package 'jellyfish-dbgsym' in '../jellyfish-dbgsym_2.3.0-13_amd64.deb'. dpkg-deb: building package 'libjellyfish-2.0-2-dbgsym' in '../libjellyfish-2.0-2-dbgsym_2.3.0-13_amd64.deb'. dpkg-deb: building package 'python3-dna-jellyfish' in '../python3-dna-jellyfish_2.3.0-13_amd64.deb'. dpkg-deb: building package 'libjellyfish-2.0-dev' in '../libjellyfish-2.0-dev_2.3.0-13_amd64.deb'. dpkg-deb: building package 'libjellyfish-2.0-2' in '../libjellyfish-2.0-2_2.3.0-13_amd64.deb'. dpkg-deb: building package 'python3-dna-jellyfish-dbgsym' in '../python3-dna-jellyfish-dbgsym_2.3.0-13_amd64.deb'. dpkg-deb: building package 'libjellyfish-perl' in '../libjellyfish-perl_2.3.0-13_amd64.deb'. dpkg-deb: building package 'libjellyfish-perl-dbgsym' in '../libjellyfish-perl-dbgsym_2.3.0-13_amd64.deb'. dpkg-genbuildinfo --build=any -O../jellyfish_2.3.0-13_amd64.buildinfo dpkg-genchanges --build=any -O../jellyfish_2.3.0-13_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/jellyfish-YHqIap /tmp/jellyfish-2.3.0-13o0pc35xi I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.qC83fO4rf6... I: success in 2078.1001 seconds md5: jellyfish-dbgsym_2.3.0-13_amd64.deb: OK md5: jellyfish_2.3.0-13_amd64.deb: OK md5: libjellyfish-2.0-2-dbgsym_2.3.0-13_amd64.deb: OK md5: libjellyfish-2.0-2_2.3.0-13_amd64.deb: OK md5: Value of 'md5' differs for libjellyfish-2.0-dev_2.3.0-13_amd64.deb md5: Size differs for libjellyfish-2.0-dev_2.3.0-13_amd64.deb md5: libjellyfish-perl-dbgsym_2.3.0-13_amd64.deb: OK md5: libjellyfish-perl_2.3.0-13_amd64.deb: OK md5: python3-dna-jellyfish-dbgsym_2.3.0-13_amd64.deb: OK md5: python3-dna-jellyfish_2.3.0-13_amd64.deb: OK sha1: jellyfish-dbgsym_2.3.0-13_amd64.deb: OK sha1: jellyfish_2.3.0-13_amd64.deb: OK sha1: libjellyfish-2.0-2-dbgsym_2.3.0-13_amd64.deb: OK sha1: libjellyfish-2.0-2_2.3.0-13_amd64.deb: OK sha1: Value of 'sha1' differs for libjellyfish-2.0-dev_2.3.0-13_amd64.deb sha1: Size differs for libjellyfish-2.0-dev_2.3.0-13_amd64.deb sha1: libjellyfish-perl-dbgsym_2.3.0-13_amd64.deb: OK sha1: libjellyfish-perl_2.3.0-13_amd64.deb: OK sha1: python3-dna-jellyfish-dbgsym_2.3.0-13_amd64.deb: OK sha1: python3-dna-jellyfish_2.3.0-13_amd64.deb: OK sha256: jellyfish-dbgsym_2.3.0-13_amd64.deb: OK sha256: jellyfish_2.3.0-13_amd64.deb: OK sha256: libjellyfish-2.0-2-dbgsym_2.3.0-13_amd64.deb: OK sha256: libjellyfish-2.0-2_2.3.0-13_amd64.deb: OK sha256: Value of 'sha256' differs for libjellyfish-2.0-dev_2.3.0-13_amd64.deb sha256: Size differs for libjellyfish-2.0-dev_2.3.0-13_amd64.deb sha256: libjellyfish-perl-dbgsym_2.3.0-13_amd64.deb: OK sha256: libjellyfish-perl_2.3.0-13_amd64.deb: OK sha256: python3-dna-jellyfish-dbgsym_2.3.0-13_amd64.deb: OK sha256: python3-dna-jellyfish_2.3.0-13_amd64.deb: OK Checksums: FAIL Cannot generate diffoscope for libjellyfish-2.0-dev_2.3.0-13_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/3e83b9a93448e1c7e978a1301d78ae97364dcd8fab6c7ae2bbfe0bef9ca13aa9/download