Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/j/jalview/jalview_2.11.1.4+dfsg-3_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/jalview-2.11.1.4+dfsg-3_qtzytbj/jalview_2.11.1.4+dfsg-3_all.buildinfo Get source package info: jalview=2.11.1.4+dfsg-3 Source URL: http://snapshot.notset.fr/mr/package/jalview/2.11.1.4+dfsg-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 ant=1.10.12-1 ant-optional=1.10.12-1 antlr=2.7.7+dfsg-12 autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.38-2 binutils-common=2.38-2 binutils-x86-64-linux-gnu=2.38-2 bnd=5.0.1-3 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 ca-certificates-java=20190909 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-16 dash=0.5.11+git20210903+057cd650a4ed-3 dctrl-tools=2.24-3+b1 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 default-jdk=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 devscripts=2.22.1 dh-autoreconf=20 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dirmngr=2.2.27-3 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 fakeroot=1.27-1 file=1:5.41-2 findutils=4.8.0-1 fontconfig-config=2.13.1-4.4 fonts-dejavu-core=2.37-2 g++=4:11.2.0-2 g++-11=11.2.0-16 gcc=4:11.2.0-2 gcc-11=11.2.0-16 gcc-11-base=11.2.0-16 gettext=0.21-4 gettext-base=0.21-4 gnupg=2.2.27-3 gnupg-l10n=2.2.27-3 gnupg-utils=2.2.27-3 gpg=2.2.27-3 gpg-agent=2.2.27-3 gpg-wks-client=2.2.27-3 gpg-wks-server=2.2.27-3 gpgconf=2.2.27-3 gpgsm=2.2.27-3 gpgv=2.2.27-3 gradle=4.4.1-13 gradle-debian-helper=2.1 grep=3.7-1 groff-base=1.22.4-8 groovy=2.4.21-1 gzip=1.10-4 hostname=3.23 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 ivy=2.5.0-2 java-common=0.72 java-wrappers=0.3 javahelp2=2.0.05.ds1-9.1 javahelper=0.78 junit4=4.13.2-1 libacl1=2.3.1-1 libactivation-java=1.2.0-2 libandroid-json-org-java=20121204-20090211-5 libantlr-java=2.7.7+dfsg-12 libantlr4-runtime-java=4.7.2-5 libaopalliance-java=20070526-6 libapache-mime4j-java=0.8.2-1 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libargs4j-java=2.33-1.1 libasan6=11.2.0-16 libasm-java=9.2-1 libasound2=1.2.6.1-1 libasound2-data=1.2.6.1-1 libassuan0=2.5.5-1 libatinject-jsr330-api-java=1.0+ds1-5 libatomic1=11.2.0-16 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libaxis-java=1.4-28 libb-hooks-op-check-perl=0.22-1+b4 libbcel-java=6.5.0-1 libbcpg-java=1.68-5 libbcprov-java=1.68-5 libbinutils=2.38-2 libbiojava5-java=5.4.0+dfsg-3 libblkid1=2.37.3-1+b1 libbrotli1=1.0.9-2+b3 libbsd0=0.11.5-1+b1 libbsf-java=1:2.4.0-8 libbsh-java=2.0b4-20 libbz2-1.0=1.0.8-5 libc-bin=2.33-6 libc-dev-bin=2.33-6 libc6=2.33-6 libc6-dev=2.33-6 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcastor-core-java=1.3.2-7 libcastor-xml-java=1.3.2-7 libcc1-0=11.2.0-16 libcdi-api-java=1.2-3 libciftools-java=3.0.1-1 libclass-method-modifiers-perl=2.13-1 libclass-xsaccessor-perl=1.19-3+b8 libcodemodel-java=2.6+jaxb2.3.0.1-10 libcom-err2=1.46.5-2 libcommons-cli-java=1.4-2 libcommons-codec-java=1.15-1 libcommons-collections3-java=3.2.2-2 libcommons-compress-java=1.21-1 libcommons-discovery-java=0.5-4 libcommons-exec-java=1.3-2 libcommons-httpclient-java=3.1-16 libcommons-io-java=2.11.0-2 libcommons-jexl2-java=2.1.1-5 libcommons-lang-java=2.6-9 libcommons-lang3-java=3.11-1 libcommons-logging-java=1.2-2 libcommons-math-java=2.2-8 libcommons-parent-java=43-1 libcommons-text-java=1.9-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-2 libctf0=2.38-2 libcups2=2.4.1op1-1 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-4 libdd-plist-java=1.20-1.1 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdevel-callchecker-perl=0.008-1+b3 libdom4j-java=2.1.3-1 libdpkg-perl=1.21.1 libdrm-amdgpu1=2.4.110-1 libdrm-common=2.4.110-1 libdrm-intel1=2.4.110-1 libdrm-nouveau2=2.4.110-1 libdrm-radeon1=2.4.110-1 libdrm2=2.4.110-1 libdtd-parser-java=1.2-1 libdynaloader-functions-perl=0.003-1.1 libeclipse-jdt-annotation-java=2.2.600+eclipse4.21-1 libedit2=3.1-20210910-1 libel-api-java=3.0.0-3 libelf1=0.186-1 libencode-locale-perl=1.05-1.1 libexec-maven-plugin-java=1.6.0-4.1 libexpat1=2.4.6-1 libfakeroot=1.27-1 libfastinfoset-java=1.2.12-3 libfastutil-java=8.5.6+dfsg-1 libfelix-framework-java=4.6.1-2.1 libfelix-gogo-runtime-java=0.16.2-1.1 libfelix-resolver-java=1.16.0-1 libffi8=3.4.2-4 libfile-dirlist-perl=0.05-2 libfile-homedir-perl=1.006-1 libfile-listing-perl=6.14-1 libfile-stripnondeterminism-perl=1.13.0-1 libfile-touch-perl=0.12-1 libfile-which-perl=1.23-1 libfindbugs-java=3.1.0~preview2-3 libfontconfig1=2.13.1-4.4 libfreetype6=2.11.1+dfsg-1 libgcc-11-dev=11.2.0-16 libgcc-s1=11.2.0-16 libgcrypt20=1.9.4-5 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgeronimo-annotation-1.3-spec-java=1.3-1 libgeronimo-interceptor-3.0-spec-java=1.0.1-4 libgif7=5.1.9-2 libgl1=1.4.0-1 libgl1-mesa-dri=21.3.5-1 libglapi-mesa=21.3.5-1 libglib2.0-0=2.70.4-1 libglvnd0=1.4.0-1 libglx-mesa0=21.3.5-1 libglx0=1.4.0-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.3-4+b1 libgomp1=11.2.0-16 libgoogle-gson-java=2.8.8-1 libgpg-error0=1.43-3 libgradle-core-java=4.4.1-13 libgradle-plugins-java=4.4.1-13 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libguava-java=29.0-6 libguice-java=4.2.3-2 libhamcrest-java=1.3-9 libharfbuzz0b=2.7.4-1 libhawtjni-runtime-java=1.17-1 libhogweed6=3.7.3-1 libhtml-parser-perl=3.76-1+b1 libhtml-tagset-perl=3.20-4 libhtml-tree-perl=5.07-2 libhtsjdk-java=2.24.1+dfsg-1 libhttp-cookies-perl=6.10-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.36-1 libhttp-negotiate-perl=6.01-1 libhttpclient-java=4.5.13-3 libhttpcore-java=4.4.14-2 libhttpmime-java=4.5.13-3 libicu67=67.1-7 libidn2-0=2.3.2-2 libimport-into-perl=1.002005-1 libinchi1=1.03+dfsg-4+b1 libintervalstorej-java=1.2+dfsg-4 libio-html-perl=1.004-2 libio-pty-perl=1:1.15-2+b1 libio-socket-ssl-perl=2.074-2 libipc-run-perl=20200505.0-1 libisl23=0.24-2 libistack-commons-java=3.0.6-5 libitext5-java=5.5.13.2-1 libitm1=11.2.0-16 libjaba-client-java=2.2.0-2 libjackson2-annotations-java=2.13.0-1 libjackson2-core-java=2.13.0-2 libjackson2-databind-java=2.13.0-2 libjansi-java=1.18-1 libjansi-native-java=1.8-1 libjarjar-java=1.4+svn142-10 libjatl-java=0.2.3-1.1 libjavaewah-java=1.1.7-1 libjaxb-api-java=2.3.1-1 libjaxb-java=2.3.0.1-10 libjaxen-java=1.1.6-4 libjaxrs-api-java=2.1.2-2 libjaxws-api-java=2.3.0-1.1 libjcifs-java=1.3.19-2 libjcip-annotations-java=20060626-6 libjcommander-java=1.71-3 libjersey1-client-java=1.19.3-7 libjersey1-core-java=1.19.3-7 libjetty9-java=9.4.45-1 libjformatstring-java=0.10~20131207-2.1 libjfreesvg-java=4.1-2 libjgit-java=4.11.9-1 libjgrapht-java=1.5.1-3 libjgraphx-java=2.1.0.7-2 libjheaps-java=0.14-2 libjline2-java=2.14.6-4 libjmol-java=14.32.3+dfsg1-1 libjna-java=5.9.0-1 libjna-jni=5.9.0-1 libjni-inchi-java=0.8+dfsg-6 libjni-inchi-jni=0.8+dfsg-6 libjpeg62-turbo=1:2.1.2-1 libjs-jquery=3.6.0+dfsg+~3.5.13-1 libjsch-java=0.1.55-1 libjson-simple-java=2.3.0-1 libjsoup-java=1.14.3-1 libjsp-api-java=2.3.4-3 libjsr305-java=0.1~+svn49-11 libjsr311-api-java=1.1.1-1.1 libjswingreader-java=0.3-3 libjws-api-java=1.1-2 libjzlib-java=1.1.3-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libkryo-java=2.20-7 libksba8=1.6.0-2 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.59+dfsg-1+b1 liblightcouch-java=0.0.6-1.1 libllvm13=1:13.0.1-3 liblog4j1.2-java=1.2.17-11 liblog4j2-java=2.17.1-1 liblogback-java=1:1.2.10-1 liblsan0=11.2.0-16 liblwp-mediatypes-perl=6.04-1 liblwp-protocol-https-perl=6.10-1 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmail-java=1.6.5-1 libmaven-archiver-java=3.2.0-2.1 libmaven-compiler-plugin-java=3.8.1-4 libmaven-file-management-java=3.0.0-1 libmaven-jar-plugin-java=3.1.2-1 libmaven-parent-java=31-2 libmaven-resolver-java=1.4.2-3 libmaven-shared-incremental-java=1.1-3 libmaven-shared-io-java=3.0.0-3 libmaven-shared-utils-java=3.3.0-1 libmaven3-core-java=3.6.3-5 libmd0=1.0.4-1 libmiglayout-java=5.1-3 libminlog-java=1.3.0-1.1 libmmtf-java=1.0.11-1 libmodule-runtime-perl=0.016-1 libmongodb-java=3.6.3-2 libmoo-perl=2.005004-3 libmount1=2.37.3-1+b1 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libmsgpack-java=0.9.0-1 libnaga-java=3.0+svn80-4 libnative-platform-java=0.14-5 libnative-platform-jni=0.14-5 libncurses6=6.3-2 libncursesw6=6.3-2 libnekohtml-java=1.9.22-1.1 libnet-http-perl=6.22-1 libnet-ssleay-perl=1.92-1+b1 libnettle8=3.7.3-1 libngs-java=2.11.2-3 libngs-sdk-dev=2.11.2-3 libngs-sdk2=2.11.2-3 libnpth0=1.6-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.32-3 libnss3=2:3.75-1 libobjenesis-java=3.2-1 libosgi-annotation-java=8.0.1-1 libosgi-compendium-java=7.0.0-1 libosgi-core-java=7.0.0-2 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libparams-classify-perl=0.015-1+b4 libpciaccess0=0.16-3 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libpcsclite1=1.9.5-3 libperl5.34=5.34.0-3 libpipeline1=1.5.5-1 libplexus-archiver-java=3.6.0-2 libplexus-cipher-java=1.8-2 libplexus-classworlds-java=2.6.0-1 libplexus-compiler-java=2.8.8-2 libplexus-component-annotations-java=2.1.0-1 libplexus-container-default-java=2.1.0-1 libplexus-interpolation-java=1.26-1 libplexus-io-java=3.2.0-1.1 libplexus-languages-java=0.9.10-2 libplexus-sec-dispatcher-java=1.4-4 libplexus-utils2-java=3.3.0-1 libpng16-16=1.6.37-3 libpolyglot-maven-java=0.8~tobrien+git20120905-10 libpython3-stdlib=3.9.8-1 libpython3.9-minimal=3.9.10-1 libpython3.9-stdlib=3.9.10-1 libqdox-java=1.12.1-3 libqdox2-java=2.0.0-1 libquadmath0=11.2.0-16 libreadline8=8.1.2-1 libreflectasm-java=1.11.6+dfsg-1 librelaxng-datatype-java=1.0+ds1-3.1 librhino-java=1.7.7.2-3 librngom-java=2.3.0.1-10 librole-tiny-perl=2.002004-1 libsaaj-java=1.4.0-3 libsasl2-2=2.1.27+dfsg2-3 libsasl2-modules-db=2.1.27+dfsg2-3 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsemanage-common=3.3-1 libsemanage2=3.3-1+b1 libsensors-config=1:3.6.0-7 libsensors5=1:3.6.0-7 libsepol2=3.3-1 libservlet-api-java=4.0.1-2 libservlet3.1-java=1:4.0.1-2 libsigsegv2=2.14-1 libsimple-http-java=4.1.21-1.1 libsisu-inject-java=0.3.4-2 libsisu-plexus-java=0.3.4-3 libslf4j-java=1.7.32-1 libsmartcols1=2.37.3-1+b1 libsnappy-java=1.1.8.3-1 libsnappy-jni=1.1.8.3-1 libsnappy1v5=1.1.8-1 libsqlite3-0=3.37.2-2 libssl1.1=1.1.1m-1 libstax-ex-java=1.7.8-3 libstdc++-11-dev=11.2.0-16 libstdc++6=11.2.0-16 libstreambuffer-java=1.5.4-1.1 libsub-override-perl=0.09-2 libsub-quote-perl=2.006006-1 libsystemd0=250.3-2 libtasn1-6=4.18.0-4 libtimedate-perl=2.3300-2 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtry-tiny-perl=0.31-1 libtsan0=11.2.0-16 libtxw2-java=2.3.0.1-10 libubsan1=11.2.0-16 libuchardet0=0.0.7-1 libudev1=250.3-2 libunistring2=1.0-1 liburi-perl=5.10-1 libuuid1=2.37.3-1+b1 libvamsas-client-java=0.2+dfsg-2 libvecmath-java=1.5.2-7 libvulkan1=1.3.204.0-1 libwagon-file-java=3.3.4-1 libwagon-http-java=3.3.4-1 libwagon-provider-api-java=3.3.4-1 libwebsocket-api-java=1.1-2 libwsdl4j-java=1.6.3-4.1 libwww-perl=6.61-1 libwww-robotrules-perl=6.02-1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libx11-xcb1=2:1.7.2-2+b1 libxau6=1:1.0.9-1 libxbean-reflect-java=4.5-8 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-present0=1.14-3 libxcb-shm0=1.14-3 libxcb-sync1=1.14-3 libxcb-xfixes0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxerces2-java=2.12.1-1 libxext6=2:1.3.4-1 libxfixes3=1:6.0.0-1 libxi6=2:1.8-1 libxml-commons-external-java=1.4.01-5 libxml-commons-resolver1.1-java=1.2-11 libxml2=2.9.12+dfsg-6 libxpp3-java=1.1.4c-3 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxsom-java=2.3.0.1-10 libxstream-java=1.4.18-2 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libxz-java=1.9-1 libyaml-snake-java=1.29-1 libz3-4=4.8.12-1+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.16.10-1 login=1:4.11.1+dfsg1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.1-1 maven-repo-helper=1.10 mawk=1.3.4.20200120-3+b1 media-types=5.0.0 ncurses-base=6.3-2 ncurses-bin=6.3-2 netbase=6.3 openjdk-11-jdk=11.0.14+9-1 openjdk-11-jdk-headless=11.0.14+9-1 openjdk-11-jre=11.0.14+9-1 openjdk-11-jre-headless=11.0.14+9-1 openssl=1.1.1m-1 passwd=1:4.11.1+dfsg1-1 patch=2.7.6-7 patchutils=0.4.2-1 perl=5.34.0-3 perl-base=5.34.0-3 perl-modules-5.34=5.34.0-3 perl-openssl-defaults=5 pinentry-curses=1.1.0-4 po-debconf=1.0.21+nmu1 python3=3.9.8-1 python3-minimal=3.9.8-1 python3.9=3.9.10-1 python3.9-minimal=3.9.10-1 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 testng=6.9.12-4 tzdata=2021e-1 ucf=3.0043 unzip=6.0-26 util-linux=2.37.3-1+b1 varna=3-93+ds-3 wdiff=1.2.2-2+b1 x11-common=1:7.7+23 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220226T025804Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220226T025804Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220225T153342Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220221T085442Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d jalview=2.11.1.4+dfsg-3 && mkdir -p /build/jalview-gCbRB6 && dpkg-source --no-check -x /*.dsc /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg && chown -R builduser:builduser /build/jalview-gCbRB6" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1645548038" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/jalview-gCbRB6 /tmp/jalview-2.11.1.4+dfsg-3_qtzytbj bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220221T085442Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.v6kzpnDQA_ as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.v6kzpnDQA_ Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220221T085442Z unstable/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220221T085442Z unstable/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (1081 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4696 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-6) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220226T025804Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220226T025804Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220225T153342Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220221T085442Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.v6kzpnDQA_ Get:1 http://snapshot.notset.fr/archive/debian/20220226T025804Z bookworm InRelease [130 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220225T153342Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220221T085442Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220226T025804Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220226T025804Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220226T025804Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220226T025804Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220226T025804Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220226T025804Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220226T025804Z bookworm/main Sources [11.9 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220226T025804Z bookworm/main amd64 Packages [11.3 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220225T153342Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220225T153342Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220225T153342Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220225T153342Z unstable/main amd64 Packages [12.2 MB] Fetched 35.7 MB in 29s (1223 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.v6kzpnDQA_ I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d jalview=2.11.1.4+dfsg-3 && mkdir -p /build/jalview-gCbRB6 && dpkg-source --no-check -x /*.dsc /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg && chown -R builduser:builduser /build/jalview-gCbRB6"' exec /tmp/mmdebstrap.v6kzpnDQA_ Reading package lists... NOTICE: 'jalview' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/java-team/jalview.git Please use: git clone https://salsa.debian.org/java-team/jalview.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 11.1 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220226T025804Z bookworm/main jalview 2.11.1.4+dfsg-3 (dsc) [2584 B] Get:2 http://snapshot.notset.fr/archive/debian/20220226T025804Z bookworm/main jalview 2.11.1.4+dfsg-3 (tar) [11.1 MB] Get:3 http://snapshot.notset.fr/archive/debian/20220226T025804Z bookworm/main jalview 2.11.1.4+dfsg-3 (diff) [35.3 kB] Fetched 11.1 MB in 9s (1273 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'jalview_2.11.1.4+dfsg-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting jalview in /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg dpkg-source: info: unpacking jalview_2.11.1.4+dfsg.orig.tar.xz dpkg-source: info: unpacking jalview_2.11.1.4+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying newer-mime4j-api.diff dpkg-source: info: applying change_package_jfree.patch dpkg-source: info: applying get_rid_of_quaqua.patch dpkg-source: info: applying using_right_json_simple_package.patch dpkg-source: info: applying deactivate_getdown.patch dpkg-source: info: applying deactivate_classgraph.patch dpkg-source: info: applying correct_last_assertion_MemorySettingTest.patch dpkg-source: info: applying deactivate_google_analytics.patch dpkg-source: info: applying build_gradle.patch dpkg-source: info: applying selecting_tests_in_build_gradle.patch dpkg-source: info: applying write_build_properties.patch dpkg-source: info: applying BS_package.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1645548038" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.v6kzpnDQA_ dpkg-buildpackage: info: source package jalview dpkg-buildpackage: info: source version 2.11.1.4+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . debian/rules clean dh clean --with javahelper --with maven_repo_helper dh_auto_clean sh -c "find . -wholename .*build/tmp | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" sh -c "find . -wholename .*build/debian | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" rm -Rf /build/jalview-gCbRB6/jalview-2.11.1.4\+dfsg/.gradle /build/jalview-gCbRB6/jalview-2.11.1.4\+dfsg/buildSrc/.gradle .m2 jh_clean mh_clean debian/rules override_dh_clean make[1]: Entering directory '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg' dh_clean # Removing our handmade pom. rm -f pom.xml make[1]: Leaving directory '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg' debian/rules binary-indep dh binary-indep --with javahelper --with maven_repo_helper dh_update_autotools_config -i dh_autoreconf -i debian/rules override_dh_auto_configure make[1]: Entering directory '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg' # Placing pom.xml at root, with a hack to put the package version number # inside the pom. sed 's/\(VERSION_PACKAGE\)/\12.11.1.4+dfsg/; s/VERSION_PACKAGE\(.*\)+dfsg[0-9]*/\1/' debian/pom.xml > pom.xml dh_auto_configure make[1]: Leaving directory '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg' jh_linkjars -i dh_auto_build -i mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=jalview -Dfile.encoding=UTF-8 --parallel --max-workers=10 jar Initialized native services in: /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/.gradle/native Using 10 worker leases. Creating new cache for fileHashes, path /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1991f767 Creating new cache for resourceHashesCache, path /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1991f767 Creating new cache for fileHashes, path /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b58ff9e WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access using Lookup on org.gradle.internal.reflect.JavaMethod (file:/usr/share/gradle/lib/gradle-base-services-4.4.1.jar) to class java.lang.ClassLoader WARNING: Please consider reporting this to the maintainers of org.gradle.internal.reflect.JavaMethod WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release Starting Build Compiling initialization script '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. Creating new cache for metadata-1.1/results, path /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5f631ca0 Compiling initialization script '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/settings.gradle'. Settings file not found (/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'jalview' instead of the name of the root directory 'jalview-2.11.1.4+dfsg' Projects loaded. Root project using build file '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/build.gradle'. Included projects: [root project 'jalview'] Keep-alive timer started Adding Debian repository to project 'jalview' Parallel execution is an incubating feature. Evaluating root project 'jalview' using build file '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/build.gradle'. Compiling build file '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/build.gradle' using BuildScriptTransformer. file or directory '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/usr/share/java', not found Adding Maven pom generation to project 'jalview' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : Creating new cache for annotation-processors, path /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@686fb58a Tasks to be executed: [task ':copyHelp', task ':buildIndices', task ':compileJava', task ':processResources', task ':classes', task ':createBuildProperties', task ':debianMavenPom', task ':compileLinkCheck', task ':cleanBuildingHTML', task ':convertBuildingMD', task ':syncDocs', task ':syncResources', task ':prepare', task ':linkCheck', task ':jar'] Creating new cache for resourceHashesCache, path /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b58ff9e Creating new cache for taskHistory, path /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@6c7f804c Creating new cache for outputFiles, path /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@59aa2fba :copyHelp (Thread[main,5,main]) started. :copyHelp Putting task artifact state for task ':copyHelp' into context took 0.004 secs. Up-to-date check for task ':copyHelp' took 0.407 secs. It is not up-to-date because: No history is available. :copyHelp (Thread[main,5,main]) completed. Took 1.275 secs. :buildIndices (Thread[main,5,main]) started. :buildIndices Putting task artifact state for task ':buildIndices' into context took 0.0 secs. Up-to-date check for task ':buildIndices' took 3.88 secs. It is not up-to-date because: No history is available. Starting process 'command '/usr/lib/jvm/java-11-openjdk-amd64/bin/java''. Working directory: /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/classes/help Command: /usr/lib/jvm/java-11-openjdk-amd64/bin/java -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/classes:/usr/share/java/jline2-2.14.6.jar:/usr/share/java/jcl-over-slf4j.jar:/usr/share/java/libintl-0.21.jar:/usr/share/java/libintl.jar:/usr/share/java/log4j-over-slf4j.jar:/usr/share/java/junit4.jar:/usr/share/java/org.apache.felix.framework.jar:/usr/share/java/osgi.annotation.jar:/usr/share/java/felix-resolver.jar:/usr/share/java/jansi.jar:/usr/share/java/xz.jar:/usr/share/java/ant-1.10.12.jar:/usr/share/java/ant-launcher-1.10.12.jar:/usr/share/java/ant-bootstrap.jar:/usr/share/java/ant-launcher.jar:/usr/share/java/ant.jar:/usr/share/java/ant-junit4-1.10.12.jar:/usr/share/java/ant-swing-1.10.12.jar:/usr/share/java/ant-testutil-1.10.12.jar:/usr/share/java/ant-xz-1.10.12.jar:/usr/share/java/ant-antlr.jar:/usr/share/java/ant-apache-bcel.jar:/usr/share/java/ant-apache-bsf.jar:/usr/share/java/ant-apache-log4j.jar:/usr/share/java/ant-apache-oro.jar:/usr/share/java/ant-apache-regexp.jar:/usr/share/java/ant-apache-resolver.jar:/usr/share/java/ant-apache-xalan2.jar:/usr/share/java/ant-commons-logging.jar:/usr/share/java/ant-commons-net.jar:/usr/share/java/ant-javamail.jar:/usr/share/java/ant-jdepend.jar:/usr/share/java/ant-jmf.jar:/usr/share/java/ant-jsch.jar:/usr/share/java/ant-junit.jar:/usr/share/java/ant-junit4.jar:/usr/share/java/ant-swing.jar:/usr/share/java/ant-testutil.jar:/usr/share/java/ant-xz.jar:/usr/share/java/org.apache.felix.gogo.runtime-0.16.2.jar:/usr/share/java/hawtjni-runtime-1.17.jar:/usr/share/java/jline2.jar:/usr/share/java/snakeyaml.jar:/usr/share/java/antlr-2.7.7.jar:/usr/share/java/antlr.debug.jar:/usr/share/java/antlr.jar:/usr/share/java/antlrall.jar:/usr/share/java/hamcrest-generator.jar:/usr/share/java/hamcrest-library.jar:/usr/share/java/hawtjni-runtime.jar:/usr/share/java/osgi.compendium.jar:/usr/share/java/bnd-libg.jar:/usr/share/java/osgi.annotation-8.0.1.jar:/usr/share/java/osgi.core.jar:/usr/share/java/jansi-native-1.8.jar:/usr/share/java/osgi.cmpn.jar:/usr/share/java/bnd.junit.jar:/usr/share/java/hamcrest-all-1.3.jar:/usr/share/java/hamcrest-generator-1.3.jar:/usr/share/java/hamcrest-library-1.3.jar:/usr/share/java/hamcrest-all.jar:/usr/share/java/hamcrest-integration.jar:/usr/share/java/org.apache.felix.framework-4.6.1.jar:/usr/share/java/felix-resolver-1.16.0.jar:/usr/share/java/jansi-1.18.jar:/usr/share/java/jul-to-slf4j.jar:/usr/share/java/bnd.jar:/usr/share/java/ant-antlr-1.10.12.jar:/usr/share/java/ant-apache-bcel-1.10.12.jar:/usr/share/java/ant-apache-bsf-1.10.12.jar:/usr/share/java/ant-apache-log4j-1.10.12.jar:/usr/share/java/ant-apache-oro-1.10.12.jar:/usr/share/java/ant-apache-regexp-1.10.12.jar:/usr/share/java/ant-apache-resolver-1.10.12.jar:/usr/share/java/ant-apache-xalan2-1.10.12.jar:/usr/share/java/ant-commons-logging-1.10.12.jar:/usr/share/java/ant-commons-net-1.10.12.jar:/usr/share/java/ant-javamail-1.10.12.jar:/usr/share/java/ant-jdepend-1.10.12.jar:/usr/share/java/ant-jmf-1.10.12.jar:/usr/share/java/ant-jsch-1.10.12.jar:/usr/share/java/ant-junit-1.10.12.jar:/usr/share/java/hamcrest-unit-test.jar:/usr/share/java/junit4-4.13.2.jar:/usr/share/java/org.apache.felix.gogo.runtime.jar:/usr/share/java/osgi.core-7.0.0.jar:/usr/share/java/jansi-native.jar:/usr/share/java/osgi.cmpn-7.0.0.jar:/usr/share/java/bndlib.jar:/usr/share/java/hamcrest-core-1.3.jar:/usr/share/java/hamcrest-integration-1.3.jar:/usr/share/java/hamcrest-unit-test-1.3.jar:/usr/share/java/hamcrest-core.jar:/usr/share/java/slf4j-api.jar:/usr/share/java/slf4j-jcl.jar:/usr/share/java/slf4j-jdk14.jar:/usr/share/java/slf4j-log4j12.jar:/usr/share/java/slf4j-migrator.jar:/usr/share/java/slf4j-nop.jar:/usr/share/java/slf4j-simple.jar:/usr/share/java/jcl-over-slf4j-1.7.32.jar:/usr/share/java/jul-to-slf4j-1.7.32.jar:/usr/share/java/log4j-over-slf4j-1.7.32.jar:/usr/share/java/slf4j-api-1.7.32.jar:/usr/share/java/slf4j-jcl-1.7.32.jar:/usr/share/java/slf4j-jdk14-1.7.32.jar:/usr/share/java/slf4j-log4j12-1.7.32.jar:/usr/share/java/slf4j-migrator-1.7.32.jar:/usr/share/java/slf4j-nop-1.7.32.jar:/usr/share/java/slf4j-simple-1.7.32.jar:/usr/share/java/snakeyaml-1.29.jar:/usr/share/java/bndlib.launcher.jar:/usr/share/java/xz-1.9.jar:/usr/share/java/gettext.jar:/usr/share/java/xstream.jar:/usr/share/java/atinject-jsr330-api.jar:/usr/share/java/commons-lang.jar:/usr/share/java/httpcore-4.4.14.jar:/usr/share/java/asm-all-9.2.jar:/usr/share/java/asm-commons-9.2.jar:/usr/share/java/asm-util-9.2.jar:/usr/share/java/asm-analysis.jar:/usr/share/java/asm-debug-all.jar:/usr/share/java/asm-util.jar:/usr/share/java/fluent-hc-4.5.13.jar:/usr/share/java/bsf-2.4.0.jar:/usr/share/java/httpclient-4.5.13.jar:/usr/share/java/commons-cli-1.4.jar:/usr/share/java/xstream-1.4.18.jar:/usr/share/java/groovy-2.4.21.jar:/usr/share/java/commons-compress.jar:/usr/share/java/guava.jar:/usr/share/java/jarjar-1.4.jar:/usr/share/java/commons-logging-adapters-1.2.jar:/usr/share/java/commons-logging-adapters.jar:/usr/share/java/commons-logging.jar:/usr/share/java/fluent-hc.jar:/usr/share/java/qdox-1.12.1.jar:/us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gradle-launcher-4.4.1.jar:/usr/share/java/gradle-launcher.jar:/usr/share/java/gradle-dependency-placeholder.jar:/usr/share/java/maven-repo-helper.jar:/usr/share/java/gradle-helper-plugin-1.5.jar:/usr/share/java/jh-client-2.0.05.ds1.jar:/usr/share/java/jhall-2.0.05.ds1.jar:/usr/share/java/jh.jar:/usr/share/java/gradle-announce-4.4.1.jar:/usr/share/java/gradle-antlr-4.4.1.jar:/usr/share/java/gradle-build-cache-http-4.4.1.jar:/usr/share/java/gradle-build-comparison-4.4.1.jar:/usr/share/java/gradle-build-init-4.4.1.jar:/usr/share/java/gradle-code-quality-4.4.1.jar:/usr/share/java/gradle-composite-builds-4.4.1.jar:/usr/share/java/gradle-dependency-management-4.4.1.jar:/usr/share/java/gradle-diagnostics-4.4.1.jar:/usr/share/java/gradle-ear-4.4.1.jar:/usr/share/java/gradle-ide-4.4.1.jar:/usr/share/java/gradle-ide-native-4.4.1.jar:/usr/share/java/gradle-ide-play-4.4.1.jar:/usr/share/java/gradle-ivy-4.4.1.jar:/usr/share/java/gradle-jacoco-4.4.1.jar:/usr/share/java/gradle-javascript-4.4.1.jar:/usr/share/java/gradle-language-groovy-4.4.1.jar:/usr/share/java/gradle-language-java-4.4.1.jar:/usr/share/java/gradle-language-jvm-4.4.1.jar:/usr/share/java/gradle-language-native-4.4.1.jar:/usr/share/java/gradle-language-scala-4.4.1.jar:/usr/share/java/gradle-maven-4.4.1.jar:/usr/share/java/gradle-osgi-4.4.1.jar:/usr/share/java/gradle-platform-base-4.4.1.jar:/usr/share/java/gradle-platform-jvm-4.4.1.jar:/usr/share/java/gradle-platform-native-4.4.1.jar:/usr/share/java/gradle-platform-play-4.4.1.jar:/usr/share/java/gradle-plugin-development-4.4.1.jar:/usr/share/java/gradle-plugin-use-4.4.1.jar:/usr/share/java/gradle-plugins-4.4.1.jar:/usr/share/java/gradle-publish-4.4.1.jar:/usr/share/java/gradle-reporting-4.4.1.jar:/usr/share/java/gradle-resources-http-4.4.1.jar:/usr/share/java/gradle-resources-sftp-4.4.1.jar:/usr/share/java/gradle-scala-4.4.1.jar:/usr/share/java/gradle-signing-4.4.1.jar:/usr/share/java/gradle-test-kit-4.4.1.jar:/usr/share/java/gradle-testing-base-4.4.1.jar:/usr/share/java/gradle-testing-jvm-4.4.1.jar:/usr/share/java/gradle-testing-native-4.4.1.jar:/usr/share/java/gradle-tooling-api-builders-4.4.1.jar:/usr/share/java/gradle-version-control-4.4.1.jar:/usr/share/java/gradle-workers-4.4.1.jar:/usr/share/java/gradle-announce.jar:/usr/share/java/gradle-antlr.jar:/usr/share/java/gradle-build-cache-http.jar:/usr/share/java/gradle-build-comparison.jar:/usr/share/java/gradle-build-init.jar:/usr/share/java/gradle-code-quality.jar:/usr/share/java/gradle-composite-builds.jar:/usr/share/java/gradle-dependency-management.jar:/usr/share/java/gradle-diagnostics.jar:/usr/share/java/gradle-ear.jar:/usr/share/java/gradle-ide-native.jar:/usr/share/java/gradle-ide-play.jar:/usr/share/java/gradle-ide.jar:/usr/share/java/gradle-ivy.jar:/usr/share/java/gradle-jacoco.jar:/usr/share/java/gradle-javascript.jar:/usr/share/java/gradle-language-groovy.jar:/usr/share/java/gradle-language-java.jar:/usr/share/java/gradle-language-jvm.jar:/usr/share/java/gradle-language-native.jar:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/gradle-dependency-placeholder-1.0.jar:/usr/share/java/gradle-helper-plugin.jar:/usr/share/java/fastutil-8.5.6.jar:/usr/share/java/jgrapht-io-1.5.1.jar:/usr/share/java/mongodb-driver.jar:/usr/share/java/jgrapht-guava.jar:/usr/share/java/mongo-java-driver.jar:/usr/share/java/jaxb-core.jar:/usr/share/java/jaxb-jxc.jar:/usr/share/java/jaxb-xjc-jdk9.jar:/usr/share/java/jaxb-core-2.3.0.1.jar:/usr/share/java/jaxb-jxc-2.3.0.1.jar:/usr/share/java/jaxb-runtime-2.3.0.1.jar:/usr/share/java/jaxb-xjc-jdk9-2.3.0.1.jar:/usr/share/java/maven-archiver-3.2.0.jar:/usr/share/java/jheaps-0.14.jar:/usr/share/java/jgrapht-ext-1.5.1.jar:/usr/share/java/jgrapht-demo.jar:/usr/share/java/lightcouch.jar:/usr/share/java/import-properties-plugin.jar:/usr/share/java/istack-commons-buildtools.jar:/usr/share/java/istack-commons-maven-plugin.jar:/usr/share/java/istack-commons-runtime.jar:/usr/share/java/istack-commons-soimp.jar:/usr/share/java/istack-commons-test.jar:/usr/share/java/istack-commons-tools.jar:/usr/share/java/import-properties-plugin-3.0.6.jar:/usr/share/java/istack-commons-buildtools-3.0.6.jar:/usr/share/java/istack-commons-maven-plugin-3.0.6.jar:/usr/share/java/istack-commons-runtime-3.0.6.jar:/usr/share/java/istack-commons-soimp-3.0.6.jar:/usr/share/java/istack-commons-test-3.0.6.jar:/usr/share/java/istack-commons-tools-3.0.6.jar:/usr/share/java/jgraphx.jar:/usr/share/java/jgrapht-opt-1.5.1.jar:/usr/share/java/jgrapht-io.jar:/usr/share/java/mongodb-driver-async.jar:/usr/share/java/codemodel-annotation-compiler.jar:/usr/share/java/codemodel.jar:/usr/share/java/codemodel-2.3.0.1.jar:/usr/share/java/codemodel-annotation-compiler-2.3.0.1.jar:/usr/share/java/jgrapht-demo-1.5.1.jar:/usr/share/java/relaxngDatatype-1.0.jar:/usr/share/java/relaxngDatatype.jar:/usr/share/java/mongodb-driver-3.6.3.jar:/usr/share/java/rngom.jar:/usr/share/java/rngom-2.3.0.1.jar:/usr/share/java/mongodb-driver-async-3.6.3.jar:/usr/share/java/xsom.jar:/usr/share/java/xsom-2.3.0.1.jar:/usr/share/java/jgrapht-opt.jar:/usr/share/java/mongodb-driver-core.jar:/usr/share/java/txw2.jar:/usr/share/java/txwc2.jar:/usr/share/java/txw2-2.3.0.1.jar:/usr/share/java/txwc2-2.3.0.1.jar:/usr/share/java/mongo-java-driver-3.6.3.jar:/usr/share/java/dtd-parser.jar:/usr/share/java/dtd-parser-1.2.jar:/usr/share/java/mongodb-driver-core-3.6.3.jar:/usr/share/java/stax-ex.jar:/usr/share/java/stax-ex-1.7.8.jar:/usr/share/java/jgrapht-guava-1.5.1.jar:/usr/share/java/streambuffer.jar:/usr/share/java/streambuffer-1.5.4.jar:/usr/share/java/jgraphx-2.1.0.7.jar:/usr/share/java/jgrapht-core.jar:/usr/share/java/json-simple-2.3.0.jar:/usr/share/java/FastInfoset.jar:/usr/share/java/FastInfosetUtilities.jar:/usr/share/java/FastInfoset-1.2.12.jar:/usr/share/java/FastInfosetUtilities-1.2.12.jar:/usr/share/java/maven-archiver.jar:/usr/share/java/commons-text-1.9.jar:/usr/share/java/jheaps.jar:/usr/share/java/lightcouch-0.0.6.jar:/usr/share/java/jgrapht-core-1.5.1.jar:/usr/share/java/bson-3.6.3.jar:/usr/share/java/jaxb-jxc-jdk9.jar:/usr/share/java/jaxb-runtime.jar:/usr/share/java/jaxb-xjc.jar:/usr/share/java/jaxb-impl.jar:/usr/share/java/jaxb-jxc-jdk9-2.3.0.1.jar:/usr/share/java/jaxb-xjc-2.3.0.1.jar:/usr/share/java/commons-text.jar:/usr/share/java/fastutil.jar:/usr/share/java/json-simple.jar:/usr/share/java/jgrapht-ext.jar:/usr/share/java/bson.jar:/usr/share/java/commons-exec.jar:/usr/share/java/log4j-1.2-1.2.17.jar:/usr/share/java/jni-inchi-0.8.jar:/usr/share/java/naga-3_0.jar:/usr/share/java/log4j-1.2-api.jar:/usr/share/java/log4j-api.jar:/usr/share/java/log4j-core.jar:/usr/share/java/log4j-couchdb.jar:/usr/share/java/log4j-jcl.jar:/usr/share/java/log4j-jul.jar:/usr/share/java/log4j-mongodb3.jar:/usr/share/java/log4j-to-slf4j.jar:/usr/share/java/log4j-web.jar:/usr/share/java/log4j-1.2-api-2.17.1.jar:/usr/share/java/log4j-api-2.17.1.jar:/usr/share/java/log4j-core-2.17.1.jar:/usr/share/java/log4j-couchdb-2.17.1.jar:/usr/share/java/log4j-jcl-2.17.1.jar:/usr/share/java/log4j-jul-2.17.1.jar:/usr/share/java/log4j-mongodb3-2.17.1.jar:/usr/share/java/log4j-to-slf4j-2.17.1.jar:/usr/share/java/log4j-web-2.17.1.jar:/usr/share/java/JmolData-14.32.3.jar:/usr/share/java/maven-shared-incremental.jar:/usr/share/java/maven-shared-incremental-1.1.jar:/usr/share/java/jackson-annotations.jar:/usr/share/java/jackson-core.jar:/usr/share/java/jackson-core-2.13.0.jar:/usr/share/java/jackson-databind.jar:/usr/share/java/msgpack-core.jar:/usr/share/java/msgpack-core-0.9.0.jar:/usr/share/java/Jmol.jar:/usr/share/java/mmtf-api.jar:/usr/share/java/mmtf-serialization.jar:/usr/share/java/mmtf-codec-1.0.11.jar:/usr/share/java/vecmath-1.5.2.jar:/usr/share/java/commons-exec-1.3.jar:/usr/share/java/jni-inchi.jar:/usr/share/java/naga-3_0-3.0+svn80.jar:/usr/share/java/Jmol-14.32.3.jar:/usr/share/java/plexus-compiler-api-2.x.jar:/usr/share/java/plexus-compiler-csharp-2.x.jar:/usr/share/java/plexus-compiler-eclipse-2.x.jar:/usr/share/java/plexus-compiler-j2objc-2.x.jar:/usr/share/java/plexus-compiler-javac-2.x.jar:/usr/share/java/plexus-compiler-jikes-2.x.jar:/usr/share/java/plexus-compiler-manager-2.x.jar:/usr/share/java/plexus-compiler-test-2.x.jar:/usr/share/java/plexus-compiler-api-2.x-2.8.8.jar:/usr/share/java/plexus-compiler-csharp-2.x-2.8.8.jar:/usr/share/java/plexus-compiler-eclipse-2.x-2.8.8.jar:/usr/share/java/plexus-compiler-j2objc-2.x-2.8.8.jar:/usr/share/java/plexus-compiler-javac-2.x-2.8.8.jar:/usr/share/java/plexus-compiler-jikes-2.x-2.8.8.jar:/usr/share/java/plexus-compiler-manager-2.x-2.8.8.jar:/usr/share/java/plexus-compiler-test-2.x-2.8.8.jar:/usr/share/java/qdox2.jar:/usr/share/java/qdox2-2.0.0.jar:/usr/share/java/plexus-java.jar:/usr/share/java/plexus-java-0.9.10.jar:/usr/share/java/Jvxl-14.32.3.jar:/usr/share/java/jackson-annotations-2.13.0.jar:/usr/share/java/jackson-databind-2.13.0.jar:/usr/share/java/msgpack-jackson.jar:/usr/share/java/msgpack-jackson-0.9.0.jar:/usr/share/java/JmolData.jar:/usr/share/java/mmtf-codec.jar:/usr/share/java/mmtf-api-1.0.11.jar:/usr/share/java/mmtf-serialization-1.0.11.jar:/usr/share/java/vecmath.jar:/usr/share/java/log4j-1.2.jar:/usr/share/java/Jvxl.jar:/usr/share/java/jswingreader-0.3.jar:/usr/share/java/miglayout-swing.jar:/usr/share/java/miglayout-core-5.1-SNAPSHOT.jar:/usr/share/java/miglayout-javafx-5.1-SNAPSHOT.jar:/usr/share/java/biojava5-aa-prop.jar:/usr/share/java/biojava5-alignment.jar:/usr/share/java/biojava5-core.jar:/usr/share/java/biojava5-forester.jar:/usr/share/java/biojava5-genome.jar:/usr/share/java/biojava5-jcolorbrewer.jar:/usr/share/java/biojava5-modfinder.jar:/usr/share/java/biojava5-ontology.jar:/usr/share/java/biojava5-protein-disorder.jar:/usr/share/java/biojava5-structure-gui.jar:/usr/share/java/biojava5-structure.jar:/usr/share/java/biojava5-survival.jar:/usr/share/java/biojava5-ws.jar:/usr/share/java/biojava5-aa-prop-5.4.0.jar:/usr/share/java/biojava5-alignment-5.4.0.jar:/usr/share/java/biojava5-core-5.4.0.jar:/usr/share/java/biojava5-forester-5.4.0.jar:/usr/sha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com.sun.java.help.search.Indexer html Successfully started process 'command '/usr/lib/jvm/java-11-openjdk-amd64/bin/java'' :buildIndices (Thread[main,5,main]) completed. Took 6.045 secs. :compileJava (Thread[main,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.0 secs. file or directory '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/src/main/java', not found file or directory '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/src/main/java', not found Up-to-date check for task ':compileJava' took 23.38 secs. It is not up-to-date because: No history is available. Setting target compatibility to 11 All input files are considered out-of-date for incremental task ':compileJava'. file or directory '/build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/src/main/java', not found Compiling with JDK Java compiler API. /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/src/jalview/gui/Console.java:470: error: incompatible types: JalviewAppender cannot be converted to Appender org.apache.log4j.Logger.getRootLogger().addAppender(jappender); ^ /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/src/jalview/bin/Cache.java:310: error: incompatible types: ConsoleAppender cannot be converted to Appender org.apache.log4j.Logger.getRootLogger().addAppender(ap); // catch all for ^ /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/src/jalview/gui/JalviewAppender.java:49: error: cannot find symbol final String message = this.layout.format(loggingEvent); ^ symbol: variable layout /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg/src/jalview/ws/dbsources/EmblXmlSource.java:73: warning: [dep-ann] deprecated item is not annotated with @Deprecated public abstract class EmblXmlSource extends EbiFileRetrievedProxy ^ Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. Note: Some messages have been simplified; recompile with -Xdiags:verbose to get full output 3 errors 1 warning :compileJava FAILED :compileJava (Thread[main,5,main]) completed. Took 40.089 secs. FAILURE: Build failed with an exception. * What went wrong: Execution failed for task ':compileJava'. > Compilation failed; see the compiler error output for details. * Try: Run with --debug option to get more log output. Run with --scan to get full insights. * Exception is: org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':compileJava'. at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:100) at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:70) at org.gradle.api.internal.tasks.execution.OutputDirectoryCreatingTaskExecuter.execute(OutputDirectoryCreatingTaskExecuter.java:51) at org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:62) at org.gradle.api.internal.tasks.execution.ResolveTaskOutputCachingStateExecuter.execute(ResolveTaskOutputCachingStateExecuter.java:54) at org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:60) at org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:97) at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:87) at org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTaskExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:52) at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:52) at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:54) at org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43) at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:34) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker$1.run(DefaultTaskGraphExecuter.java:248) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:241) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:230) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.processTask(DefaultTaskPlanExecutor.java:123) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.access$200(DefaultTaskPlanExecutor.java:79) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:104) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:98) at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.execute(DefaultTaskExecutionPlan.java:626) at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.executeWithTask(DefaultTaskExecutionPlan.java:581) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.run(DefaultTaskPlanExecutor.java:98) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor.process(DefaultTaskPlanExecutor.java:59) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter.execute(DefaultTaskGraphExecuter.java:128) at org.gradle.execution.SelectedTaskExecutionAction.execute(SelectedTaskExecutionAction.java:37) at org.gradle.execution.DefaultBuildExecuter.execute(DefaultBuildExecuter.java:37) at org.gradle.execution.DefaultBuildExecuter.access$000(DefaultBuildExecuter.java:23) at org.gradle.execution.DefaultBuildExecuter$1.proceed(DefaultBuildExecuter.java:43) at org.gradle.execution.DryRunBuildExecutionAction.execute(DryRunBuildExecutionAction.java:46) at org.gradle.execution.DefaultBuildExecuter.execute(DefaultBuildExecuter.java:37) at org.gradle.execution.DefaultBuildExecuter.execute(DefaultBuildExecuter.java:30) at org.gradle.initialization.DefaultGradleLauncher$ExecuteTasks.run(DefaultGradleLauncher.java:314) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) at org.gradle.initialization.DefaultGradleLauncher.runTasks(DefaultGradleLauncher.java:204) at org.gradle.initialization.DefaultGradleLauncher.doBuildStages(DefaultGradleLauncher.java:134) at org.gradle.initialization.DefaultGradleLauncher.executeTasks(DefaultGradleLauncher.java:109) at org.gradle.internal.invocation.GradleBuildController$1.call(GradleBuildController.java:78) at org.gradle.internal.invocation.GradleBuildController$1.call(GradleBuildController.java:75) at org.gradle.internal.work.DefaultWorkerLeaseService.withLocks(DefaultWorkerLeaseService.java:152) at org.gradle.internal.invocation.GradleBuildController.doBuild(GradleBuildController.java:100) at org.gradle.internal.invocation.GradleBuildController.run(GradleBuildController.java:75) at org.gradle.tooling.internal.provider.ExecuteBuildActionRunner.run(ExecuteBuildActionRunner.java:28) at org.gradle.launcher.exec.ChainingBuildActionRunner.run(ChainingBuildActionRunner.java:35) at org.gradle.tooling.internal.provider.ValidatingBuildActionRunner.run(ValidatingBuildActionRunner.java:32) at org.gradle.launcher.exec.RunAsBuildOperationBuildActionRunner$1.run(RunAsBuildOperationBuildActionRunner.java:43) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) at org.gradle.launcher.exec.RunAsBuildOperationBuildActionRunner.run(RunAsBuildOperationBuildActionRunner.java:40) at org.gradle.tooling.internal.provider.SubscribableBuildActionRunner.run(SubscribableBuildActionRunner.java:51) at org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:47) at org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:30) at org.gradle.launcher.exec.BuildTreeScopeBuildActionExecuter.execute(BuildTreeScopeBuildActionExecuter.java:39) at org.gradle.launcher.exec.BuildTreeScopeBuildActionExecuter.execute(BuildTreeScopeBuildActionExecuter.java:25) at org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:80) at org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:53) at org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:57) at org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:32) at org.gradle.tooling.internal.provider.GradleThreadBuildActionExecuter.execute(GradleThreadBuildActionExecuter.java:36) at org.gradle.tooling.internal.provider.GradleThreadBuildActionExecuter.execute(GradleThreadBuildActionExecuter.java:25) at org.gradle.tooling.internal.provider.ParallelismConfigurationBuildActionExecuter.execute(ParallelismConfigurationBuildActionExecuter.java:43) at org.gradle.tooling.internal.provider.ParallelismConfigurationBuildActionExecuter.execute(ParallelismConfigurationBuildActionExecuter.java:29) at org.gradle.tooling.internal.provider.StartParamsValidatingActionExecuter.execute(StartParamsValidatingActionExecuter.java:69) at org.gradle.tooling.internal.provider.StartParamsValidatingActionExecuter.execute(StartParamsValidatingActionExecuter.java:30) at org.gradle.tooling.internal.provider.SessionFailureReportingActionExecuter.execute(SessionFailureReportingActionExecuter.java:59) at org.gradle.tooling.internal.provider.SessionFailureReportingActionExecuter.execute(SessionFailureReportingActionExecuter.java:44) at org.gradle.tooling.internal.provider.SetupLoggingActionExecuter.execute(SetupLoggingActionExecuter.java:45) at org.gradle.tooling.internal.provider.SetupLoggingActionExecuter.execute(SetupLoggingActionExecuter.java:30) at org.gradle.launcher.cli.RunBuildAction.run(RunBuildAction.java:51) at org.gradle.internal.Actions$RunnableActionAdapter.execute(Actions.java:173) at org.gradle.launcher.cli.CommandLineActionFactory$ParseAndBuildAction.execute(CommandLineActionFactory.java:291) at org.gradle.launcher.cli.CommandLineActionFactory$ParseAndBuildAction.execute(CommandLineActionFactory.java:264) at org.gradle.launcher.cli.JavaRuntimeValidationAction.execute(JavaRuntimeValidationAction.java:33) at org.gradle.launcher.cli.JavaRuntimeValidationAction.execute(JavaRuntimeValidationAction.java:24) at org.gradle.launcher.cli.ExceptionReportingAction.execute(ExceptionReportingAction.java:33) at org.gradle.launcher.cli.ExceptionReportingAction.execute(ExceptionReportingAction.java:22) at org.gradle.launcher.cli.CommandLineActionFactory$WithLogging.execute(CommandLineActionFactory.java:257) at org.gradle.launcher.cli.CommandLineActionFactory$WithLogging.execute(CommandLineActionFactory.java:191) at org.gradle.launcher.Main.doAction(Main.java:33) at org.gradle.launcher.bootstrap.EntryPoint.run(EntryPoint.java:45) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at org.gradle.launcher.bootstrap.ProcessBootstrap.runNoExit(ProcessBootstrap.java:60) at org.gradle.launcher.bootstrap.ProcessBootstrap.run(ProcessBootstrap.java:37) at org.gradle.launcher.GradleMain.main(GradleMain.java:23) Caused by: org.gradle.api.internal.tasks.compile.CompilationFailedException: Compilation failed; see the compiler error output for details. at org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJavaCompiler.java:50) at org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJavaCompiler.java:35) at org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.delegateAndHandleErrors(NormalizingJavaCompiler.java:98) at org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.execute(NormalizingJavaCompiler.java:51) at org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.execute(NormalizingJavaCompiler.java:37) at org.gradle.api.internal.tasks.compile.CleaningJavaCompilerSupport.execute(CleaningJavaCompilerSupport.java:35) at org.gradle.api.internal.tasks.compile.CleaningJavaCompilerSupport.execute(CleaningJavaCompilerSupport.java:25) at org.gradle.api.tasks.compile.JavaCompile.performCompilation(JavaCompile.java:207) at org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:192) at org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:124) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73) at org.gradle.api.internal.project.taskfactory.IncrementalTaskAction.doExecute(IncrementalTaskAction.java:46) at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:39) at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:26) at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$1.run(ExecuteActionsTaskExecuter.java:121) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:110) at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:92) ... 94 more * Get more help at https://help.gradle.org BUILD FAILED in 54s 3 actionable tasks: 3 executed dh_auto_build: error: gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=jalview -Dfile.encoding=UTF-8 --parallel --max-workers=10 jar returned exit code 1 make: *** [debian/rules:8: binary-indep] Error 25 dpkg-buildpackage: error: debian/rules binary-indep subprocess returned exit status 2 E: run_chroot failed: E: command failed: chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/jalview-gCbRB6/jalview-2.11.1.4+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1645548038" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" W: listening on child socket failed: I: removing tempdir /tmp/mmdebstrap.v6kzpnDQA_... E: mmdebstrap failed to run mmdebstrap failed