Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/i/iva/iva_1.0.11+ds-1_amd64.buildinfo Use metasnap for getting required timestamps Cannot get timestamps from metasnap: 404 (Not Found) Use snapshot for getting required timestamps Get source package info: iva=1.0.11+ds-1 Source URL: http://snapshot.notset.fr/mr/package/iva/1.0.11+ds-1/srcfiles?fileinfo=1 Initialize APT cache Get binary package info: autoconf=2.71-2 Binary URL: http://snapshot.notset.fr/mr/binary/autoconf/2.71-2/binfiles?fileinfo=1 Get binary package info: automake=1:1.16.4-2 Binary URL: http://snapshot.notset.fr/mr/binary/automake/1:1.16.4-2/binfiles?fileinfo=1 Get binary package info: autopoint=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/autopoint/0.21-4/binfiles?fileinfo=1 Get binary package info: autotools-dev=20180224.1+nmu1 Binary URL: http://snapshot.notset.fr/mr/binary/autotools-dev/20180224.1+nmu1/binfiles?fileinfo=1 Get binary package info: base-files=12 Binary URL: http://snapshot.notset.fr/mr/binary/base-files/12/binfiles?fileinfo=1 Get binary package info: base-passwd=3.5.52 Binary URL: http://snapshot.notset.fr/mr/binary/base-passwd/3.5.52/binfiles?fileinfo=1 Get binary package info: bash=5.1-3+b2 Binary URL: http://snapshot.notset.fr/mr/binary/bash/5.1-3+b2/binfiles?fileinfo=1 Get binary package info: binutils=2.37-7 Binary URL: http://snapshot.notset.fr/mr/binary/binutils/2.37-7/binfiles?fileinfo=1 Get binary package info: binutils-common=2.37-7 Binary URL: http://snapshot.notset.fr/mr/binary/binutils-common/2.37-7/binfiles?fileinfo=1 Get binary package info: binutils-x86-64-linux-gnu=2.37-7 Binary URL: http://snapshot.notset.fr/mr/binary/binutils-x86-64-linux-gnu/2.37-7/binfiles?fileinfo=1 Get binary package info: bioperl=1.7.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/bioperl/1.7.8-1/binfiles?fileinfo=1 Get binary package info: bsdextrautils=2.37.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/bsdextrautils/2.37.2-3/binfiles?fileinfo=1 Get binary package info: bsdutils=1:2.37.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/bsdutils/1:2.37.2-3/binfiles?fileinfo=1 Get binary package info: build-essential=12.9 Binary URL: http://snapshot.notset.fr/mr/binary/build-essential/12.9/binfiles?fileinfo=1 Get binary package info: bzip2=1.0.8-4 Binary URL: http://snapshot.notset.fr/mr/binary/bzip2/1.0.8-4/binfiles?fileinfo=1 Get binary package info: ca-certificates=20211004 Binary URL: http://snapshot.notset.fr/mr/binary/ca-certificates/20211004/binfiles?fileinfo=1 Get binary package info: ca-certificates-java=20190909 Binary URL: http://snapshot.notset.fr/mr/binary/ca-certificates-java/20190909/binfiles?fileinfo=1 Get binary package info: coreutils=8.32-4+b1 Binary URL: http://snapshot.notset.fr/mr/binary/coreutils/8.32-4+b1/binfiles?fileinfo=1 Get binary package info: cpp=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/cpp/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: cpp-11=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/cpp-11/11.2.0-9/binfiles?fileinfo=1 Get binary package info: dash=0.5.11+git20210120+802ebd4-1 Binary URL: http://snapshot.notset.fr/mr/binary/dash/0.5.11+git20210120+802ebd4-1/binfiles?fileinfo=1 Get binary package info: debconf=1.5.77 Binary URL: http://snapshot.notset.fr/mr/binary/debconf/1.5.77/binfiles?fileinfo=1 Get binary package info: debhelper=13.5.2 Binary URL: http://snapshot.notset.fr/mr/binary/debhelper/13.5.2/binfiles?fileinfo=1 Get binary package info: debianutils=5.5-1 Binary URL: http://snapshot.notset.fr/mr/binary/debianutils/5.5-1/binfiles?fileinfo=1 Get binary package info: default-jdk-headless=2:1.11-72 Binary URL: http://snapshot.notset.fr/mr/binary/default-jdk-headless/2:1.11-72/binfiles?fileinfo=1 Get binary package info: default-jre-headless=2:1.11-72 Binary URL: http://snapshot.notset.fr/mr/binary/default-jre-headless/2:1.11-72/binfiles?fileinfo=1 Get binary package info: dh-autoreconf=20 Binary URL: http://snapshot.notset.fr/mr/binary/dh-autoreconf/20/binfiles?fileinfo=1 Get binary package info: dh-python=4.20201102+nmu1 Binary URL: http://snapshot.notset.fr/mr/binary/dh-python/4.20201102+nmu1/binfiles?fileinfo=1 Get binary package info: dh-strip-nondeterminism=1.12.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/dh-strip-nondeterminism/1.12.0-1/binfiles?fileinfo=1 Get binary package info: diffutils=1:3.7-5 Binary URL: http://snapshot.notset.fr/mr/binary/diffutils/1:3.7-5/binfiles?fileinfo=1 Get binary package info: dpkg=1.20.9 Binary URL: http://snapshot.notset.fr/mr/binary/dpkg/1.20.9/binfiles?fileinfo=1 Get binary package info: dpkg-dev=1.20.9 Binary URL: http://snapshot.notset.fr/mr/binary/dpkg-dev/1.20.9/binfiles?fileinfo=1 Get binary package info: dwz=0.14-1 Binary URL: http://snapshot.notset.fr/mr/binary/dwz/0.14-1/binfiles?fileinfo=1 Get binary package info: fastaq=3.17.0-4 Binary URL: http://snapshot.notset.fr/mr/binary/fastaq/3.17.0-4/binfiles?fileinfo=1 Get binary package info: file=1:5.39-3 Binary URL: http://snapshot.notset.fr/mr/binary/file/1:5.39-3/binfiles?fileinfo=1 Get binary package info: findutils=4.8.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/findutils/4.8.0-1/binfiles?fileinfo=1 Get binary package info: fontconfig-config=2.13.1-4.2 Binary URL: http://snapshot.notset.fr/mr/binary/fontconfig-config/2.13.1-4.2/binfiles?fileinfo=1 Get binary package info: fonts-dejavu-core=2.37-2 Binary URL: http://snapshot.notset.fr/mr/binary/fonts-dejavu-core/2.37-2/binfiles?fileinfo=1 Get binary package info: g++=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/g++/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: g++-11=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/g++-11/11.2.0-9/binfiles?fileinfo=1 Get binary package info: gawk=1:5.1.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/gawk/1:5.1.0-1/binfiles?fileinfo=1 Get binary package info: gcc=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/gcc/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: gcc-11=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-11/11.2.0-9/binfiles?fileinfo=1 Get binary package info: gcc-11-base=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-11-base/11.2.0-9/binfiles?fileinfo=1 Get binary package info: gettext=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/gettext/0.21-4/binfiles?fileinfo=1 Get binary package info: gettext-base=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/gettext-base/0.21-4/binfiles?fileinfo=1 Get binary package info: grep=3.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/grep/3.7-1/binfiles?fileinfo=1 Get binary package info: groff-base=1.22.4-7 Binary URL: http://snapshot.notset.fr/mr/binary/groff-base/1.22.4-7/binfiles?fileinfo=1 Get binary package info: gzip=1.10-4 Binary URL: http://snapshot.notset.fr/mr/binary/gzip/1.10-4/binfiles?fileinfo=1 Get binary package info: help2man=1.48.5 Binary URL: http://snapshot.notset.fr/mr/binary/help2man/1.48.5/binfiles?fileinfo=1 Get binary package info: hostname=3.23 Binary URL: http://snapshot.notset.fr/mr/binary/hostname/3.23/binfiles?fileinfo=1 Get binary package info: init-system-helpers=1.60 Binary URL: http://snapshot.notset.fr/mr/binary/init-system-helpers/1.60/binfiles?fileinfo=1 Get binary package info: intltool-debian=0.35.0+20060710.5 Binary URL: http://snapshot.notset.fr/mr/binary/intltool-debian/0.35.0+20060710.5/binfiles?fileinfo=1 Get binary package info: java-common=0.72 Binary URL: http://snapshot.notset.fr/mr/binary/java-common/0.72/binfiles?fileinfo=1 Get binary package info: kmc=3.1.1+dfsg-4 Binary URL: http://snapshot.notset.fr/mr/binary/kmc/3.1.1+dfsg-4/binfiles?fileinfo=1 Get binary package info: libacl1=2.3.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libacl1/2.3.1-1/binfiles?fileinfo=1 Get binary package info: libalgorithm-diff-perl=1.201-1 Binary URL: http://snapshot.notset.fr/mr/binary/libalgorithm-diff-perl/1.201-1/binfiles?fileinfo=1 Get binary package info: libarchive-zip-perl=1.68-1 Binary URL: http://snapshot.notset.fr/mr/binary/libarchive-zip-perl/1.68-1/binfiles?fileinfo=1 Get binary package info: libasan6=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libasan6/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libasound2=1.2.5.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libasound2/1.2.5.1-1/binfiles?fileinfo=1 Get binary package info: libasound2-data=1.2.5.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libasound2-data/1.2.5.1-1/binfiles?fileinfo=1 Get binary package info: libatomic1=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libatomic1/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libattr1=1:2.5.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libattr1/1:2.5.1-1/binfiles?fileinfo=1 Get binary package info: libaudit-common=1:3.0.6-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaudit-common/1:3.0.6-1/binfiles?fileinfo=1 Get binary package info: libaudit1=1:3.0.6-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaudit1/1:3.0.6-1/binfiles?fileinfo=1 Get binary package info: libavahi-client3=0.8-5 Binary URL: http://snapshot.notset.fr/mr/binary/libavahi-client3/0.8-5/binfiles?fileinfo=1 Get binary package info: libavahi-common-data=0.8-5 Binary URL: http://snapshot.notset.fr/mr/binary/libavahi-common-data/0.8-5/binfiles?fileinfo=1 Get binary package info: libavahi-common3=0.8-5 Binary URL: http://snapshot.notset.fr/mr/binary/libavahi-common3/0.8-5/binfiles?fileinfo=1 Get binary package info: libbambamc0=0.0.50-5 Binary URL: http://snapshot.notset.fr/mr/binary/libbambamc0/0.0.50-5/binfiles?fileinfo=1 Get binary package info: libbinutils=2.37-7 Binary URL: http://snapshot.notset.fr/mr/binary/libbinutils/2.37-7/binfiles?fileinfo=1 Get binary package info: libbio-perl-perl=1.7.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/libbio-perl-perl/1.7.8-1/binfiles?fileinfo=1 Get binary package info: libblas3=3.10.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libblas3/3.10.0-1/binfiles?fileinfo=1 Get binary package info: libblkid1=2.37.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/libblkid1/2.37.2-3/binfiles?fileinfo=1 Get binary package info: libbrotli1=1.0.9-2+b2 Binary URL: http://snapshot.notset.fr/mr/binary/libbrotli1/1.0.9-2+b2/binfiles?fileinfo=1 Get binary package info: libbz2-1.0=1.0.8-4 Binary URL: http://snapshot.notset.fr/mr/binary/libbz2-1.0/1.0.8-4/binfiles?fileinfo=1 Get binary package info: libc-bin=2.32-4 Binary URL: http://snapshot.notset.fr/mr/binary/libc-bin/2.32-4/binfiles?fileinfo=1 Get binary package info: libc-dev-bin=2.32-4 Binary URL: http://snapshot.notset.fr/mr/binary/libc-dev-bin/2.32-4/binfiles?fileinfo=1 Get binary package info: libc6=2.32-4 Binary URL: http://snapshot.notset.fr/mr/binary/libc6/2.32-4/binfiles?fileinfo=1 Get binary package info: libc6-dev=2.32-4 Binary URL: http://snapshot.notset.fr/mr/binary/libc6-dev/2.32-4/binfiles?fileinfo=1 Get binary package info: libcap-ng0=0.7.9-2.2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libcap-ng0/0.7.9-2.2+b1/binfiles?fileinfo=1 Get binary package info: libcap2=1:2.44-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcap2/1:2.44-1/binfiles?fileinfo=1 Get binary package info: libcapture-tiny-perl=0.48-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcapture-tiny-perl/0.48-1/binfiles?fileinfo=1 Get binary package info: libcc1-0=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libcc1-0/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libclass-data-inheritable-perl=0.08-3 Binary URL: http://snapshot.notset.fr/mr/binary/libclass-data-inheritable-perl/0.08-3/binfiles?fileinfo=1 Get binary package info: libcom-err2=1.46.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcom-err2/1.46.4-1/binfiles?fileinfo=1 Get binary package info: libcrypt-dev=1:4.4.25-2 Binary URL: http://snapshot.notset.fr/mr/binary/libcrypt-dev/1:4.4.25-2/binfiles?fileinfo=1 Get binary package info: libcrypt1=1:4.4.25-2 Binary URL: http://snapshot.notset.fr/mr/binary/libcrypt1/1:4.4.25-2/binfiles?fileinfo=1 Get binary package info: libctf-nobfd0=2.37-7 Binary URL: http://snapshot.notset.fr/mr/binary/libctf-nobfd0/2.37-7/binfiles?fileinfo=1 Get binary package info: libctf0=2.37-7 Binary URL: http://snapshot.notset.fr/mr/binary/libctf0/2.37-7/binfiles?fileinfo=1 Get binary package info: libcups2=2.3.3op2-7 Binary URL: http://snapshot.notset.fr/mr/binary/libcups2/2.3.3op2-7/binfiles?fileinfo=1 Get binary package info: libcurl3-gnutls=7.74.0-1.3+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libcurl3-gnutls/7.74.0-1.3+b1/binfiles?fileinfo=1 Get binary package info: libdata-stag-perl=0.14-2 Binary URL: http://snapshot.notset.fr/mr/binary/libdata-stag-perl/0.14-2/binfiles?fileinfo=1 Get binary package info: libdb5.3=5.3.28+dfsg1-0.8 Binary URL: http://snapshot.notset.fr/mr/binary/libdb5.3/5.3.28+dfsg1-0.8/binfiles?fileinfo=1 Get binary package info: libdbus-1-3=1.12.20-2 Binary URL: http://snapshot.notset.fr/mr/binary/libdbus-1-3/1.12.20-2/binfiles?fileinfo=1 Get binary package info: libdebconfclient0=0.260 Binary URL: http://snapshot.notset.fr/mr/binary/libdebconfclient0/0.260/binfiles?fileinfo=1 Get binary package info: libdebhelper-perl=13.5.2 Binary URL: http://snapshot.notset.fr/mr/binary/libdebhelper-perl/13.5.2/binfiles?fileinfo=1 Get binary package info: libdeflate0=1.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/libdeflate0/1.8-1/binfiles?fileinfo=1 Get binary package info: libdevel-stacktrace-perl=2.0400-1 Binary URL: http://snapshot.notset.fr/mr/binary/libdevel-stacktrace-perl/2.0400-1/binfiles?fileinfo=1 Get binary package info: libdpkg-perl=1.20.9 Binary URL: http://snapshot.notset.fr/mr/binary/libdpkg-perl/1.20.9/binfiles?fileinfo=1 Get binary package info: libelf1=0.185-2 Binary URL: http://snapshot.notset.fr/mr/binary/libelf1/0.185-2/binfiles?fileinfo=1 Get binary package info: libexception-class-perl=1.45-1 Binary URL: http://snapshot.notset.fr/mr/binary/libexception-class-perl/1.45-1/binfiles?fileinfo=1 Get binary package info: libexpat1=2.4.1-2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libexpat1/2.4.1-2+b1/binfiles?fileinfo=1 Get binary package info: libffi8=3.4.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/libffi8/3.4.2-3/binfiles?fileinfo=1 Get binary package info: libfile-stripnondeterminism-perl=1.12.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libfile-stripnondeterminism-perl/1.12.0-1/binfiles?fileinfo=1 Get binary package info: libfontconfig1=2.13.1-4.2 Binary URL: http://snapshot.notset.fr/mr/binary/libfontconfig1/2.13.1-4.2/binfiles?fileinfo=1 Get binary package info: libfreetype6=2.11.0+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/libfreetype6/2.11.0+dfsg-1/binfiles?fileinfo=1 Get binary package info: libgcc-11-dev=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libgcc-11-dev/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libgcc-s1=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libgcc-s1/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libgcrypt20=1.9.4-3+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libgcrypt20/1.9.4-3+b1/binfiles?fileinfo=1 Get binary package info: libgdbm-compat4=1.21-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgdbm-compat4/1.21-1/binfiles?fileinfo=1 Get binary package info: libgdbm6=1.21-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgdbm6/1.21-1/binfiles?fileinfo=1 Get binary package info: libgfortran5=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libgfortran5/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libglib2.0-0=2.70.0-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libglib2.0-0/2.70.0-1+b1/binfiles?fileinfo=1 Get binary package info: libgmp10=2:6.2.1+dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/libgmp10/2:6.2.1+dfsg-2/binfiles?fileinfo=1 Get binary package info: libgnutls30=3.7.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libgnutls30/3.7.2-2/binfiles?fileinfo=1 Get binary package info: libgomp1=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libgomp1/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libgpg-error0=1.42-3 Binary URL: http://snapshot.notset.fr/mr/binary/libgpg-error0/1.42-3/binfiles?fileinfo=1 Get binary package info: libgraphite2-3=1.3.14-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgraphite2-3/1.3.14-1/binfiles?fileinfo=1 Get binary package info: libgssapi-krb5-2=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libgssapi-krb5-2/1.18.3-7/binfiles?fileinfo=1 Get binary package info: libharfbuzz0b=2.7.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libharfbuzz0b/2.7.4-1/binfiles?fileinfo=1 Get binary package info: libhogweed6=3.7.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libhogweed6/3.7.3-1/binfiles?fileinfo=1 Get binary package info: libhts3=1.13+ds-2 Binary URL: http://snapshot.notset.fr/mr/binary/libhts3/1.13+ds-2/binfiles?fileinfo=1 Get binary package info: libhtscodecs2=1.1.1-3+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libhtscodecs2/1.1.1-3+b1/binfiles?fileinfo=1 Get binary package info: libicu67=67.1-7 Binary URL: http://snapshot.notset.fr/mr/binary/libicu67/67.1-7/binfiles?fileinfo=1 Get binary package info: libidn2-0=2.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libidn2-0/2.3.2-2/binfiles?fileinfo=1 Get binary package info: libio-string-perl=1.08-3.1 Binary URL: http://snapshot.notset.fr/mr/binary/libio-string-perl/1.08-3.1/binfiles?fileinfo=1 Get binary package info: libisl23=0.24-2 Binary URL: http://snapshot.notset.fr/mr/binary/libisl23/0.24-2/binfiles?fileinfo=1 Get binary package info: libitm1=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libitm1/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libjpeg62-turbo=1:2.0.6-4 Binary URL: http://snapshot.notset.fr/mr/binary/libjpeg62-turbo/1:2.0.6-4/binfiles?fileinfo=1 Get binary package info: libk5crypto3=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libk5crypto3/1.18.3-7/binfiles?fileinfo=1 Get binary package info: libkeyutils1=1.6.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libkeyutils1/1.6.1-2/binfiles?fileinfo=1 Get binary package info: libkrb5-3=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libkrb5-3/1.18.3-7/binfiles?fileinfo=1 Get binary package info: libkrb5support0=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libkrb5support0/1.18.3-7/binfiles?fileinfo=1 Get binary package info: liblapack3=3.10.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/liblapack3/3.10.0-1/binfiles?fileinfo=1 Get binary package info: liblcms2-2=2.12~rc1-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblcms2-2/2.12~rc1-2/binfiles?fileinfo=1 Get binary package info: libldap-2.4-2=2.4.59+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/libldap-2.4-2/2.4.59+dfsg-1/binfiles?fileinfo=1 Get binary package info: liblocale-gettext-perl=1.07-4+b1 Binary URL: http://snapshot.notset.fr/mr/binary/liblocale-gettext-perl/1.07-4+b1/binfiles?fileinfo=1 Get binary package info: liblsan0=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/liblsan0/11.2.0-9/binfiles?fileinfo=1 Get binary package info: liblz4-1=1.9.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblz4-1/1.9.3-2/binfiles?fileinfo=1 Get binary package info: liblzma5=5.2.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblzma5/5.2.5-2/binfiles?fileinfo=1 Get binary package info: libmagic-mgc=1:5.39-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmagic-mgc/1:5.39-3/binfiles?fileinfo=1 Get binary package info: libmagic1=1:5.39-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmagic1/1:5.39-3/binfiles?fileinfo=1 Get binary package info: libmount1=2.37.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmount1/2.37.2-3/binfiles?fileinfo=1 Get binary package info: libmpc3=1.2.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libmpc3/1.2.0-1/binfiles?fileinfo=1 Get binary package info: libmpdec3=2.5.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libmpdec3/2.5.1-2/binfiles?fileinfo=1 Get binary package info: libmpfr6=4.1.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmpfr6/4.1.0-3/binfiles?fileinfo=1 Get binary package info: libncurses6=6.2+20210905-1 Binary URL: http://snapshot.notset.fr/mr/binary/libncurses6/6.2+20210905-1/binfiles?fileinfo=1 Get binary package info: libncursesw6=6.2+20210905-1 Binary URL: http://snapshot.notset.fr/mr/binary/libncursesw6/6.2+20210905-1/binfiles?fileinfo=1 Get binary package info: libnettle8=3.7.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libnettle8/3.7.3-1/binfiles?fileinfo=1 Get binary package info: libnghttp2-14=1.43.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libnghttp2-14/1.43.0-1/binfiles?fileinfo=1 Get binary package info: libnsl-dev=1.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libnsl-dev/1.3.0-2/binfiles?fileinfo=1 Get binary package info: libnsl2=1.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libnsl2/1.3.0-2/binfiles?fileinfo=1 Get binary package info: libnspr4=2:4.32-1 Binary URL: http://snapshot.notset.fr/mr/binary/libnspr4/2:4.32-1/binfiles?fileinfo=1 Get binary package info: libnss3=2:3.70-1 Binary URL: http://snapshot.notset.fr/mr/binary/libnss3/2:3.70-1/binfiles?fileinfo=1 Get binary package info: libp11-kit0=0.24.0-5 Binary URL: http://snapshot.notset.fr/mr/binary/libp11-kit0/0.24.0-5/binfiles?fileinfo=1 Get binary package info: libpam-modules=1.4.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-modules/1.4.0-10/binfiles?fileinfo=1 Get binary package info: libpam-modules-bin=1.4.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-modules-bin/1.4.0-10/binfiles?fileinfo=1 Get binary package info: libpam-runtime=1.4.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-runtime/1.4.0-10/binfiles?fileinfo=1 Get binary package info: libpam0g=1.4.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libpam0g/1.4.0-10/binfiles?fileinfo=1 Get binary package info: libpcre2-8-0=10.36-2 Binary URL: http://snapshot.notset.fr/mr/binary/libpcre2-8-0/10.36-2/binfiles?fileinfo=1 Get binary package info: libpcre3=2:8.39-13 Binary URL: http://snapshot.notset.fr/mr/binary/libpcre3/2:8.39-13/binfiles?fileinfo=1 Get binary package info: libpcsclite1=1.9.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpcsclite1/1.9.4-1/binfiles?fileinfo=1 Get binary package info: libperl5.32=5.32.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/libperl5.32/5.32.1-6/binfiles?fileinfo=1 Get binary package info: libpipeline1=1.5.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpipeline1/1.5.3-1/binfiles?fileinfo=1 Get binary package info: libpng16-16=1.6.37-3 Binary URL: http://snapshot.notset.fr/mr/binary/libpng16-16/1.6.37-3/binfiles?fileinfo=1 Get binary package info: libpsl5=0.21.0-1.2 Binary URL: http://snapshot.notset.fr/mr/binary/libpsl5/0.21.0-1.2/binfiles?fileinfo=1 Get binary package info: libpython3-stdlib=3.9.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3-stdlib/3.9.2-3/binfiles?fileinfo=1 Get binary package info: libpython3.9-minimal=3.9.7-4 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.9-minimal/3.9.7-4/binfiles?fileinfo=1 Get binary package info: libpython3.9-stdlib=3.9.7-4 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.9-stdlib/3.9.7-4/binfiles?fileinfo=1 Get binary package info: libquadmath0=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libquadmath0/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libreadline8=8.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libreadline8/8.1-2/binfiles?fileinfo=1 Get binary package info: librtmp1=2.4+20151223.gitfa8646d.1-2+b2 Binary URL: http://snapshot.notset.fr/mr/binary/librtmp1/2.4+20151223.gitfa8646d.1-2+b2/binfiles?fileinfo=1 Get binary package info: libsasl2-2=2.1.27+dfsg-2.1 Binary URL: http://snapshot.notset.fr/mr/binary/libsasl2-2/2.1.27+dfsg-2.1/binfiles?fileinfo=1 Get binary package info: libsasl2-modules-db=2.1.27+dfsg-2.1 Binary URL: http://snapshot.notset.fr/mr/binary/libsasl2-modules-db/2.1.27+dfsg-2.1/binfiles?fileinfo=1 Get binary package info: libseccomp2=2.5.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libseccomp2/2.5.2-2/binfiles?fileinfo=1 Get binary package info: libselinux1=3.1-3 Binary URL: http://snapshot.notset.fr/mr/binary/libselinux1/3.1-3/binfiles?fileinfo=1 Get binary package info: libsigsegv2=2.13-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsigsegv2/2.13-1/binfiles?fileinfo=1 Get binary package info: libsmartcols1=2.37.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/libsmartcols1/2.37.2-3/binfiles?fileinfo=1 Get binary package info: libsqlite3-0=3.36.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsqlite3-0/3.36.0-2/binfiles?fileinfo=1 Get binary package info: libssh2-1=1.10.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libssh2-1/1.10.0-2/binfiles?fileinfo=1 Get binary package info: libssl-dev=1.1.1l-1 Binary URL: http://snapshot.notset.fr/mr/binary/libssl-dev/1.1.1l-1/binfiles?fileinfo=1 Get binary package info: libssl1.1=1.1.1l-1 Binary URL: http://snapshot.notset.fr/mr/binary/libssl1.1/1.1.1l-1/binfiles?fileinfo=1 Get binary package info: libstdc++-11-dev=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libstdc++-11-dev/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libstdc++6=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libstdc++6/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libsub-override-perl=0.09-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsub-override-perl/0.09-2/binfiles?fileinfo=1 Get binary package info: libsub-uplevel-perl=0.2800-1.1 Binary URL: http://snapshot.notset.fr/mr/binary/libsub-uplevel-perl/0.2800-1.1/binfiles?fileinfo=1 Get binary package info: libsystemd0=249.5-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsystemd0/249.5-1/binfiles?fileinfo=1 Get binary package info: libtasn1-6=4.17.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtasn1-6/4.17.0-2/binfiles?fileinfo=1 Get binary package info: libtest-deep-perl=1.130-1 Binary URL: http://snapshot.notset.fr/mr/binary/libtest-deep-perl/1.130-1/binfiles?fileinfo=1 Get binary package info: libtest-differences-perl=0.68-1 Binary URL: http://snapshot.notset.fr/mr/binary/libtest-differences-perl/0.68-1/binfiles?fileinfo=1 Get binary package info: libtest-exception-perl=0.43-1 Binary URL: http://snapshot.notset.fr/mr/binary/libtest-exception-perl/0.43-1/binfiles?fileinfo=1 Get binary package info: libtest-most-perl=0.37-1 Binary URL: http://snapshot.notset.fr/mr/binary/libtest-most-perl/0.37-1/binfiles?fileinfo=1 Get binary package info: libtest-warn-perl=0.36-1 Binary URL: http://snapshot.notset.fr/mr/binary/libtest-warn-perl/0.36-1/binfiles?fileinfo=1 Get binary package info: libtext-diff-perl=1.45-1 Binary URL: http://snapshot.notset.fr/mr/binary/libtext-diff-perl/1.45-1/binfiles?fileinfo=1 Get binary package info: libtinfo6=6.2+20210905-1 Binary URL: http://snapshot.notset.fr/mr/binary/libtinfo6/6.2+20210905-1/binfiles?fileinfo=1 Get binary package info: libtirpc-common=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc-common/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtirpc-dev=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc-dev/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtirpc3=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc3/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtool=2.4.6-15 Binary URL: http://snapshot.notset.fr/mr/binary/libtool/2.4.6-15/binfiles?fileinfo=1 Get binary package info: libtsan0=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libtsan0/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libubsan1=11.2.0-9 Binary URL: http://snapshot.notset.fr/mr/binary/libubsan1/11.2.0-9/binfiles?fileinfo=1 Get binary package info: libuchardet0=0.0.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libuchardet0/0.0.7-1/binfiles?fileinfo=1 Get binary package info: libudev1=249.5-1 Binary URL: http://snapshot.notset.fr/mr/binary/libudev1/249.5-1/binfiles?fileinfo=1 Get binary package info: libunistring2=0.9.10-6 Binary URL: http://snapshot.notset.fr/mr/binary/libunistring2/0.9.10-6/binfiles?fileinfo=1 Get binary package info: libuuid1=2.37.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/libuuid1/2.37.2-3/binfiles?fileinfo=1 Get binary package info: libxml2=2.9.12+dfsg-5 Binary URL: http://snapshot.notset.fr/mr/binary/libxml2/2.9.12+dfsg-5/binfiles?fileinfo=1 Get binary package info: libzstd1=1.4.8+dfsg-3 Binary URL: http://snapshot.notset.fr/mr/binary/libzstd1/1.4.8+dfsg-3/binfiles?fileinfo=1 Get binary package info: linux-libc-dev=5.14.9-2 Binary URL: http://snapshot.notset.fr/mr/binary/linux-libc-dev/5.14.9-2/binfiles?fileinfo=1 Get binary package info: login=1:4.8.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/login/1:4.8.1-1/binfiles?fileinfo=1 Get binary package info: lsb-base=11.1.0 Binary URL: http://snapshot.notset.fr/mr/binary/lsb-base/11.1.0/binfiles?fileinfo=1 Get binary package info: m4=1.4.18-5 Binary URL: http://snapshot.notset.fr/mr/binary/m4/1.4.18-5/binfiles?fileinfo=1 Get binary package info: make=4.3-4.1 Binary URL: http://snapshot.notset.fr/mr/binary/make/4.3-4.1/binfiles?fileinfo=1 Get binary package info: man-db=2.9.4-2 Binary URL: http://snapshot.notset.fr/mr/binary/man-db/2.9.4-2/binfiles?fileinfo=1 Get binary package info: mawk=1.3.4.20200120-2 Binary URL: http://snapshot.notset.fr/mr/binary/mawk/1.3.4.20200120-2/binfiles?fileinfo=1 Get binary package info: media-types=4.0.0 Binary URL: http://snapshot.notset.fr/mr/binary/media-types/4.0.0/binfiles?fileinfo=1 Get binary package info: mummer=3.23+dfsg-7 Binary URL: http://snapshot.notset.fr/mr/binary/mummer/3.23+dfsg-7/binfiles?fileinfo=1 Get binary package info: ncurses-base=6.2+20210905-1 Binary URL: http://snapshot.notset.fr/mr/binary/ncurses-base/6.2+20210905-1/binfiles?fileinfo=1 Get binary package info: ncurses-bin=6.2+20210905-1 Binary URL: http://snapshot.notset.fr/mr/binary/ncurses-bin/6.2+20210905-1/binfiles?fileinfo=1 Get binary package info: openjdk-11-jdk-headless=11.0.12+7-2 Binary URL: http://snapshot.notset.fr/mr/binary/openjdk-11-jdk-headless/11.0.12+7-2/binfiles?fileinfo=1 Get binary package info: openjdk-11-jre-headless=11.0.12+7-2 Binary URL: http://snapshot.notset.fr/mr/binary/openjdk-11-jre-headless/11.0.12+7-2/binfiles?fileinfo=1 Get binary package info: openssl=1.1.1l-1 Binary URL: http://snapshot.notset.fr/mr/binary/openssl/1.1.1l-1/binfiles?fileinfo=1 Get binary package info: patch=2.7.6-7 Binary URL: http://snapshot.notset.fr/mr/binary/patch/2.7.6-7/binfiles?fileinfo=1 Get binary package info: perl=5.32.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/perl/5.32.1-6/binfiles?fileinfo=1 Get binary package info: perl-base=5.32.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/perl-base/5.32.1-6/binfiles?fileinfo=1 Get binary package info: perl-modules-5.32=5.32.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/perl-modules-5.32/5.32.1-6/binfiles?fileinfo=1 Get binary package info: po-debconf=1.0.21+nmu1 Binary URL: http://snapshot.notset.fr/mr/binary/po-debconf/1.0.21+nmu1/binfiles?fileinfo=1 Get binary package info: python3=3.9.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/python3/3.9.2-3/binfiles?fileinfo=1 Get binary package info: python3-decorator=4.4.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/python3-decorator/4.4.2-2/binfiles?fileinfo=1 Get binary package info: python3-distutils=3.9.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-distutils/3.9.7-1/binfiles?fileinfo=1 Get binary package info: python3-lib2to3=3.9.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-lib2to3/3.9.7-1/binfiles?fileinfo=1 Get binary package info: python3-minimal=3.9.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/python3-minimal/3.9.2-3/binfiles?fileinfo=1 Get binary package info: python3-networkx=2.5+ds-2 Binary URL: http://snapshot.notset.fr/mr/binary/python3-networkx/2.5+ds-2/binfiles?fileinfo=1 Get binary package info: python3-nose=1.3.7-7 Binary URL: http://snapshot.notset.fr/mr/binary/python3-nose/1.3.7-7/binfiles?fileinfo=1 Get binary package info: python3-numpy=1:1.19.5-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-numpy/1:1.19.5-1/binfiles?fileinfo=1 Get binary package info: python3-packaging=21.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-packaging/21.0-1/binfiles?fileinfo=1 Get binary package info: python3-pkg-resources=58.2.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-pkg-resources/58.2.0-1/binfiles?fileinfo=1 Get binary package info: python3-pyparsing=2.4.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-pyparsing/2.4.7-1/binfiles?fileinfo=1 Get binary package info: python3-pysam=0.15.4+ds-3+b2 Binary URL: http://snapshot.notset.fr/mr/binary/python3-pysam/0.15.4+ds-3+b2/binfiles?fileinfo=1 Get binary package info: python3-setuptools=58.2.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-setuptools/58.2.0-1/binfiles?fileinfo=1 Get binary package info: python3.9=3.9.7-4 Binary URL: http://snapshot.notset.fr/mr/binary/python3.9/3.9.7-4/binfiles?fileinfo=1 Get binary package info: python3.9-minimal=3.9.7-4 Binary URL: http://snapshot.notset.fr/mr/binary/python3.9-minimal/3.9.7-4/binfiles?fileinfo=1 Get binary package info: readline-common=8.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/readline-common/8.1-2/binfiles?fileinfo=1 Get binary package info: rpcsvc-proto=1.4.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/rpcsvc-proto/1.4.2-4/binfiles?fileinfo=1 Get binary package info: samtools=1.13-2 Binary URL: http://snapshot.notset.fr/mr/binary/samtools/1.13-2/binfiles?fileinfo=1 Get binary package info: sed=4.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/sed/4.8-1/binfiles?fileinfo=1 Get binary package info: sensible-utils=0.0.17 Binary URL: http://snapshot.notset.fr/mr/binary/sensible-utils/0.0.17/binfiles?fileinfo=1 Get binary package info: smalt=0.7.6-9 Binary URL: http://snapshot.notset.fr/mr/binary/smalt/0.7.6-9/binfiles?fileinfo=1 Get binary package info: sysvinit-utils=3.00-1 Binary URL: http://snapshot.notset.fr/mr/binary/sysvinit-utils/3.00-1/binfiles?fileinfo=1 Get binary package info: tar=1.34+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/tar/1.34+dfsg-1/binfiles?fileinfo=1 Get binary package info: tzdata=2021c-2 Binary URL: http://snapshot.notset.fr/mr/binary/tzdata/2021c-2/binfiles?fileinfo=1 Get binary package info: ucf=3.0043 Binary URL: http://snapshot.notset.fr/mr/binary/ucf/3.0043/binfiles?fileinfo=1 Get binary package info: util-linux=2.37.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/util-linux/2.37.2-3/binfiles?fileinfo=1 Get binary package info: xz-utils=5.2.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/xz-utils/5.2.5-2/binfiles?fileinfo=1 Get binary package info: zlib1g=1:1.2.11.dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/zlib1g/1:1.2.11.dfsg-2/binfiles?fileinfo=1 Remaining packages to be found: 254 Timestamp source (111 packages): deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211014T215029Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210922T025414Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211012T024642Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210902T030735Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210923T205029Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210816T024705Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210827T030044Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210823T024636Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210929T025048Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211016T025026Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210830T143924Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210928T151606Z/ bookworm main Remaining packages to be found: 11 Timestamp source (3 packages): deb http://snapshot.notset.fr/archive/debian/20211103T025035Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210926T025629Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210901T090918Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211014T085745Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210911T144836Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210828T025147Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210818T025459Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210906T024530Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211009T024746Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211015T025547Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210908T025933Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210930T025245Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211004T210045Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210909T025907Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210825T030241Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210903T030245Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211005T025108Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210822T144048Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210910T030709Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210821T024315Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210916T024755Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211021T084416Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210919T145255Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210818T085356Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210915T221751Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211007T025102Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210927T084912Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210905T024240Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210819T144544Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210822T023545Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210923T145517Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211008T024925Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210824T024320Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210928T025308Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211013T030157Z/ bookworm main Remaining packages to be found: 7 Timestamp source (4 packages): deb http://snapshot.notset.fr/archive/debian/20210910T030709Z/ unstable main Remaining packages to be found: 2 Timestamp source (1 packages): deb http://snapshot.notset.fr/archive/debian/20211009T145152Z/ unstable main New buildinfo file: /tmp/iva-1.0.11+ds-1hj7q5915/iva_1.0.11+ds-1_amd64.buildinfo env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf:all=2.71-2 automake:all=1:1.16.4-2 autopoint:all=0.21-4 autotools-dev:all=20180224.1+nmu1 base-files:amd64=12 base-passwd:amd64=3.5.52 bash:amd64=5.1-3+b2 binutils:amd64=2.37-7 binutils-common:amd64=2.37-7 binutils-x86-64-linux-gnu:amd64=2.37-7 bioperl:all=1.7.8-1 bsdextrautils:amd64=2.37.2-3 bsdutils:amd64=1:2.37.2-3 build-essential:amd64=12.9 bzip2:amd64=1.0.8-4 ca-certificates:all=20211004 ca-certificates-java:all=20190909 coreutils:amd64=8.32-4+b1 cpp:amd64=4:11.2.0-2 cpp-11:amd64=11.2.0-9 dash:amd64=0.5.11+git20210120+802ebd4-1 debconf:all=1.5.77 debhelper:all=13.5.2 debianutils:amd64=5.5-1 default-jdk-headless:amd64=2:1.11-72 default-jre-headless:amd64=2:1.11-72 dh-autoreconf:all=20 dh-python:all=4.20201102+nmu1 dh-strip-nondeterminism:all=1.12.0-1 diffutils:amd64=1:3.7-5 dpkg:amd64=1.20.9 dpkg-dev:all=1.20.9 dwz:amd64=0.14-1 fastaq:all=3.17.0-4 file:amd64=1:5.39-3 findutils:amd64=4.8.0-1 fontconfig-config:all=2.13.1-4.2 fonts-dejavu-core:all=2.37-2 g++:amd64=4:11.2.0-2 g++-11:amd64=11.2.0-9 gawk:amd64=1:5.1.0-1 gcc:amd64=4:11.2.0-2 gcc-11:amd64=11.2.0-9 gcc-11-base:amd64=11.2.0-9 gettext:amd64=0.21-4 gettext-base:amd64=0.21-4 grep:amd64=3.7-1 groff-base:amd64=1.22.4-7 gzip:amd64=1.10-4 help2man:amd64=1.48.5 hostname:amd64=3.23 init-system-helpers:all=1.60 intltool-debian:all=0.35.0+20060710.5 java-common:all=0.72 kmc:amd64=3.1.1+dfsg-4 libacl1:amd64=2.3.1-1 libalgorithm-diff-perl:all=1.201-1 libarchive-zip-perl:all=1.68-1 libasan6:amd64=11.2.0-9 libasound2:amd64=1.2.5.1-1 libasound2-data:all=1.2.5.1-1 libatomic1:amd64=11.2.0-9 libattr1:amd64=1:2.5.1-1 libaudit-common:all=1:3.0.6-1 libaudit1:amd64=1:3.0.6-1 libavahi-client3:amd64=0.8-5 libavahi-common-data:amd64=0.8-5 libavahi-common3:amd64=0.8-5 libbambamc0:amd64=0.0.50-5 libbinutils:amd64=2.37-7 libbio-perl-perl:all=1.7.8-1 libblas3:amd64=3.10.0-1 libblkid1:amd64=2.37.2-3 libbrotli1:amd64=1.0.9-2+b2 libbz2-1.0:amd64=1.0.8-4 libc-bin:amd64=2.32-4 libc-dev-bin:amd64=2.32-4 libc6:amd64=2.32-4 libc6-dev:amd64=2.32-4 libcap-ng0:amd64=0.7.9-2.2+b1 libcap2:amd64=1:2.44-1 libcapture-tiny-perl:all=0.48-1 libcc1-0:amd64=11.2.0-9 libclass-data-inheritable-perl:all=0.08-3 libcom-err2:amd64=1.46.4-1 libcrypt-dev:amd64=1:4.4.25-2 libcrypt1:amd64=1:4.4.25-2 libctf-nobfd0:amd64=2.37-7 libctf0:amd64=2.37-7 libcups2:amd64=2.3.3op2-7 libcurl3-gnutls:amd64=7.74.0-1.3+b1 libdata-stag-perl:all=0.14-2 libdb5.3:amd64=5.3.28+dfsg1-0.8 libdbus-1-3:amd64=1.12.20-2 libdebconfclient0:amd64=0.260 libdebhelper-perl:all=13.5.2 libdeflate0:amd64=1.8-1 libdevel-stacktrace-perl:all=2.0400-1 libdpkg-perl:all=1.20.9 libelf1:amd64=0.185-2 libexception-class-perl:all=1.45-1 libexpat1:amd64=2.4.1-2+b1 libffi8:amd64=3.4.2-3 libfile-stripnondeterminism-perl:all=1.12.0-1 libfontconfig1:amd64=2.13.1-4.2 libfreetype6:amd64=2.11.0+dfsg-1 libgcc-11-dev:amd64=11.2.0-9 libgcc-s1:amd64=11.2.0-9 libgcrypt20:amd64=1.9.4-3+b1 libgdbm-compat4:amd64=1.21-1 libgdbm6:amd64=1.21-1 libgfortran5:amd64=11.2.0-9 libglib2.0-0:amd64=2.70.0-1+b1 libgmp10:amd64=2:6.2.1+dfsg-2 libgnutls30:amd64=3.7.2-2 libgomp1:amd64=11.2.0-9 libgpg-error0:amd64=1.42-3 libgraphite2-3:amd64=1.3.14-1 libgssapi-krb5-2:amd64=1.18.3-7 libharfbuzz0b:amd64=2.7.4-1 libhogweed6:amd64=3.7.3-1 libhts3:amd64=1.13+ds-2 libhtscodecs2:amd64=1.1.1-3+b1 libicu67:amd64=67.1-7 libidn2-0:amd64=2.3.2-2 libio-string-perl:all=1.08-3.1 libisl23:amd64=0.24-2 libitm1:amd64=11.2.0-9 libjpeg62-turbo:amd64=1:2.0.6-4 libk5crypto3:amd64=1.18.3-7 libkeyutils1:amd64=1.6.1-2 libkrb5-3:amd64=1.18.3-7 libkrb5support0:amd64=1.18.3-7 liblapack3:amd64=3.10.0-1 liblcms2-2:amd64=2.12~rc1-2 libldap-2.4-2:amd64=2.4.59+dfsg-1 liblocale-gettext-perl:amd64=1.07-4+b1 liblsan0:amd64=11.2.0-9 liblz4-1:amd64=1.9.3-2 liblzma5:amd64=5.2.5-2 libmagic-mgc:amd64=1:5.39-3 libmagic1:amd64=1:5.39-3 libmount1:amd64=2.37.2-3 libmpc3:amd64=1.2.0-1 libmpdec3:amd64=2.5.1-2 libmpfr6:amd64=4.1.0-3 libncurses6:amd64=6.2+20210905-1 libncursesw6:amd64=6.2+20210905-1 libnettle8:amd64=3.7.3-1 libnghttp2-14:amd64=1.43.0-1 libnsl-dev:amd64=1.3.0-2 libnsl2:amd64=1.3.0-2 libnspr4:amd64=2:4.32-1 libnss3:amd64=2:3.70-1 libp11-kit0:amd64=0.24.0-5 libpam-modules:amd64=1.4.0-10 libpam-modules-bin:amd64=1.4.0-10 libpam-runtime:all=1.4.0-10 libpam0g:amd64=1.4.0-10 libpcre2-8-0:amd64=10.36-2 libpcre3:amd64=2:8.39-13 libpcsclite1:amd64=1.9.4-1 libperl5.32:amd64=5.32.1-6 libpipeline1:amd64=1.5.3-1 libpng16-16:amd64=1.6.37-3 libpsl5:amd64=0.21.0-1.2 libpython3-stdlib:amd64=3.9.2-3 libpython3.9-minimal:amd64=3.9.7-4 libpython3.9-stdlib:amd64=3.9.7-4 libquadmath0:amd64=11.2.0-9 libreadline8:amd64=8.1-2 librtmp1:amd64=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2:amd64=2.1.27+dfsg-2.1 libsasl2-modules-db:amd64=2.1.27+dfsg-2.1 libseccomp2:amd64=2.5.2-2 libselinux1:amd64=3.1-3 libsigsegv2:amd64=2.13-1 libsmartcols1:amd64=2.37.2-3 libsqlite3-0:amd64=3.36.0-2 libssh2-1:amd64=1.10.0-2 libssl-dev:amd64=1.1.1l-1 libssl1.1:amd64=1.1.1l-1 libstdc++-11-dev:amd64=11.2.0-9 libstdc++6:amd64=11.2.0-9 libsub-override-perl:all=0.09-2 libsub-uplevel-perl:all=0.2800-1.1 libsystemd0:amd64=249.5-1 libtasn1-6:amd64=4.17.0-2 libtest-deep-perl:all=1.130-1 libtest-differences-perl:all=0.68-1 libtest-exception-perl:all=0.43-1 libtest-most-perl:all=0.37-1 libtest-warn-perl:all=0.36-1 libtext-diff-perl:all=1.45-1 libtinfo6:amd64=6.2+20210905-1 libtirpc-common:all=1.3.2-2 libtirpc-dev:amd64=1.3.2-2 libtirpc3:amd64=1.3.2-2 libtool:all=2.4.6-15 libtsan0:amd64=11.2.0-9 libubsan1:amd64=11.2.0-9 libuchardet0:amd64=0.0.7-1 libudev1:amd64=249.5-1 libunistring2:amd64=0.9.10-6 libuuid1:amd64=2.37.2-3 libxml2:amd64=2.9.12+dfsg-5 libzstd1:amd64=1.4.8+dfsg-3 linux-libc-dev:amd64=5.14.9-2 login:amd64=1:4.8.1-1 lsb-base:all=11.1.0 m4:amd64=1.4.18-5 make:amd64=4.3-4.1 man-db:amd64=2.9.4-2 mawk:amd64=1.3.4.20200120-2 media-types:all=4.0.0 mummer:amd64=3.23+dfsg-7 ncurses-base:all=6.2+20210905-1 ncurses-bin:amd64=6.2+20210905-1 openjdk-11-jdk-headless:amd64=11.0.12+7-2 openjdk-11-jre-headless:amd64=11.0.12+7-2 openssl:amd64=1.1.1l-1 patch:amd64=2.7.6-7 perl:amd64=5.32.1-6 perl-base:amd64=5.32.1-6 perl-modules-5.32:all=5.32.1-6 po-debconf:all=1.0.21+nmu1 python3:amd64=3.9.2-3 python3-decorator:all=4.4.2-2 python3-distutils:all=3.9.7-1 python3-lib2to3:all=3.9.7-1 python3-minimal:amd64=3.9.2-3 python3-networkx:all=2.5+ds-2 python3-nose:all=1.3.7-7 python3-numpy:amd64=1:1.19.5-1 python3-packaging:all=21.0-1 python3-pkg-resources:all=58.2.0-1 python3-pyparsing:all=2.4.7-1 python3-pysam:amd64=0.15.4+ds-3+b2 python3-setuptools:all=58.2.0-1 python3.9:amd64=3.9.7-4 python3.9-minimal:amd64=3.9.7-4 readline-common:all=8.1-2 rpcsvc-proto:amd64=1.4.2-4 samtools:amd64=1.13-2 sed:amd64=4.8-1 sensible-utils:all=0.0.17 smalt:amd64=0.7.6-9 sysvinit-utils:amd64=3.00-1 tar:amd64=1.34+dfsg-1 tzdata:all=2021c-2 ucf:all=3.0043 util-linux:amd64=2.37.2-3 xz-utils:amd64=5.2.5-2 zlib1g:amd64=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211020T024519Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211020T024519Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211103T025035Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210910T030709Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211009T145152Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d iva=1.0.11+ds-1 && mkdir -p /build/iva-uQeaSv && dpkg-source --no-check -x /*.dsc /build/iva-uQeaSv/iva-1.0.11+ds && chown -R builduser:builduser /build/iva-uQeaSv" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/iva-uQeaSv/iva-1.0.11+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634222847" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/iva-uQeaSv /tmp/iva-1.0.11+ds-1hj7q5915 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.lnFQI1P4iq as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.lnFQI1P4iq Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-8). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1030 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4668 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-13) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211020T024519Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211020T024519Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211103T025035Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210910T030709Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211009T145152Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.lnFQI1P4iq Get:1 http://snapshot.notset.fr/archive/debian/20211020T024519Z bookworm InRelease [128 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease Get:3 http://snapshot.notset.fr/archive/debian/20211103T025035Z bookworm InRelease [128 kB] Get:4 http://snapshot.notset.fr/archive/debian/20210910T030709Z unstable InRelease [165 kB] Get:5 http://snapshot.notset.fr/archive/debian/20211009T145152Z unstable InRelease [165 kB] Ign:6 http://snapshot.notset.fr/archive/debian/20211020T024519Z bookworm/main Sources Ign:7 http://snapshot.notset.fr/archive/debian/20211020T024519Z bookworm/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20211020T024519Z bookworm/main Sources Ign:7 http://snapshot.notset.fr/archive/debian/20211020T024519Z bookworm/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20211020T024519Z bookworm/main Sources Ign:7 http://snapshot.notset.fr/archive/debian/20211020T024519Z bookworm/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211020T024519Z bookworm/main Sources [11.7 MB] Get:7 http://snapshot.notset.fr/archive/debian/20211020T024519Z bookworm/main amd64 Packages [11.2 MB] Ign:8 http://snapshot.notset.fr/archive/debian/20211103T025035Z bookworm/main amd64 Packages Ign:9 http://snapshot.notset.fr/archive/debian/20210910T030709Z unstable/main amd64 Packages Ign:10 http://snapshot.notset.fr/archive/debian/20211009T145152Z unstable/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20211103T025035Z bookworm/main amd64 Packages Ign:9 http://snapshot.notset.fr/archive/debian/20210910T030709Z unstable/main amd64 Packages Ign:10 http://snapshot.notset.fr/archive/debian/20211009T145152Z unstable/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20211103T025035Z bookworm/main amd64 Packages Ign:9 http://snapshot.notset.fr/archive/debian/20210910T030709Z unstable/main amd64 Packages Ign:10 http://snapshot.notset.fr/archive/debian/20211009T145152Z unstable/main amd64 Packages Get:8 http://snapshot.notset.fr/archive/debian/20211103T025035Z bookworm/main amd64 Packages [11.2 MB] Get:9 http://snapshot.notset.fr/archive/debian/20210910T030709Z unstable/main amd64 Packages [11.9 MB] Get:10 http://snapshot.notset.fr/archive/debian/20211009T145152Z unstable/main amd64 Packages [11.9 MB] Fetched 58.5 MB in 47s (1255 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.lnFQI1P4iq I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d iva=1.0.11+ds-1 && mkdir -p /build/iva-uQeaSv && dpkg-source --no-check -x /*.dsc /build/iva-uQeaSv/iva-1.0.11+ds && chown -R builduser:builduser /build/iva-uQeaSv"' exec /tmp/mmdebstrap.lnFQI1P4iq Reading package lists... NOTICE: 'iva' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/iva.git Please use: git clone https://salsa.debian.org/med-team/iva.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 8689 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211020T024519Z bookworm/main iva 1.0.11+ds-1 (dsc) [2286 B] Get:2 http://snapshot.notset.fr/archive/debian/20211020T024519Z bookworm/main iva 1.0.11+ds-1 (tar) [8681 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211020T024519Z bookworm/main iva 1.0.11+ds-1 (diff) [5736 B] Fetched 8689 kB in 7s (1282 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'iva_1.0.11+ds-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting iva in /build/iva-uQeaSv/iva-1.0.11+ds dpkg-source: info: unpacking iva_1.0.11+ds.orig.tar.xz dpkg-source: info: unpacking iva_1.0.11+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying disable-multithreaded-test.patch dpkg-source: info: applying perl-shebang.patch dpkg-source: info: applying samtools1.10 dpkg-source: info: applying disable-ram-test.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/iva-uQeaSv/iva-1.0.11+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634222847" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.lnFQI1P4iq dpkg-buildpackage: info: source package iva dpkg-buildpackage: info: source version 1.0.11+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/iva-uQeaSv/iva-1.0.11+ds' rm -rf .pybuild rm -f iva/gage/*.class rm -rf /build/iva-uQeaSv/iva-1.0.11+ds/debian/man find . -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/iva-uQeaSv/iva-1.0.11+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( Checking dependencies found in path: OK kmc OK kmc_dump OK nucmer OK delta-filter OK show-coords OK samtools OK smalt running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/iva-uQeaSv/iva-1.0.11+ds' chmod a-x /build/iva-uQeaSv/iva-1.0.11+ds/iva/read_trim/adapters.fasta chmod a+x /build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/getCorrectnessStats.sh chmod a+x /build/iva-uQeaSv/iva-1.0.11+ds/iva/ratt/main.ratt.pl chmod a+x scripts/* javac -verbose /build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/*.java [parsing started SimpleFileObject[/build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/GetFastaStats.java]] [parsing completed 73ms] [parsing started SimpleFileObject[/build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/SizeFasta.java]] [parsing completed 5ms] [parsing started SimpleFileObject[/build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/SplitFastaByLetter.java]] [parsing completed 7ms] [parsing started SimpleFileObject[/build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/Utils.java]] [parsing completed 12ms] [parsing started SimpleFileObject[/build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/getScaffoldStats.java]] [parsing completed 24ms] [loading /modules/jdk.jdeps/module-info.class] [loading /modules/java.management.rmi/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/java.compiler/module-info.class] [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.httpserver/module-info.class] [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.security.jgss/module-info.class] [loading /modules/jdk.jfr/module-info.class] [loading /modules/java.datatransfer/module-info.class] [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/java.net.http/module-info.class] [loading /modules/jdk.pack/module-info.class] [loading /modules/java.sql/module-info.class] [loading /modules/java.base/module-info.class] [loading /modules/java.xml/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/java.xml.crypto/module-info.class] [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.charsets/module-info.class] [loading /modules/java.transaction.xa/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jcmd/module-info.class] [loading /modules/java.prefs/module-info.class] [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.desktop/module-info.class] [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jconsole/module-info.class] [loading /modules/java.rmi/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/java.management/module-info.class] [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.jstatd/module-info.class] [loading /modules/java.se/module-info.class] [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.naming/module-info.class] [loading /modules/java.logging/module-info.class] [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.attach/module-info.class] [loading /modules/java.scripting/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.editpad/module-info.class] [loading /modules/java.instrument/module-info.class] [search path for source files: .] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,.] [loading /modules/java.base/java/io/BufferedReader.class] [loading /modules/java.base/java/io/FileInputStream.class] [loading /modules/java.base/java/io/InputStreamReader.class] [loading /modules/java.base/java/text/DecimalFormat.class] [loading /modules/java.base/java/text/NumberFormat.class] [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/Arrays.class] [loading /modules/java.base/java/util/HashMap.class] [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/StringBuffer.class] [loading /modules/java.management/java/lang/management/ManagementFactory.class] [loading /modules/java.management/java/lang/management/MemoryMXBean.class] [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/FileReader.class] [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/util/Collections.class] [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] [checking GetFastaStats] [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/lang/Throwable.class] [loading /modules/java.base/java/lang/CharSequence.class] [loading /modules/java.base/java/io/Reader.class] [loading /modules/java.base/java/lang/Readable.class] [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/lang/Number.class] [loading /modules/java.base/java/lang/Cloneable.class] [loading /modules/java.base/java/util/AbstractMap.class] [loading /modules/java.base/java/lang/AbstractStringBuilder.class] [loading /modules/java.base/java/lang/Appendable.class] [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/io/FileDescriptor.class] [loading /modules/java.base/java/lang/System.class] [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/FilterOutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/lang/Iterable.class] [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/lang/Math.class] [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/RandomAccess.class] [loading /modules/java.base/java/util/AbstractList.class] [loading /modules/java.base/java/util/AbstractCollection.class] [loading /modules/java.base/java/util/function/IntFunction.class] [loading /modules/java.base/java/util/Comparator.class] [loading /modules/java.base/java/text/Format.class] [loading /modules/java.base/java/lang/Error.class] [loading /modules/java.base/java/lang/RuntimeException.class] [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/lang/NumberFormatException.class] [loading /modules/java.base/java/lang/IllegalArgumentException.class] [loading /modules/java.base/java/io/FileNotFoundException.class] [loading /modules/java.base/java/util/Iterator.class] [wrote /build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/GetFastaStats$ContigAt.class] [loading /modules/java.base/java/lang/invoke/StringConcatFactory.class] [loading /modules/java.base/java/lang/invoke/MethodHandles.class] [loading /modules/java.base/java/lang/invoke/MethodHandles$Lookup.class] [loading /modules/java.base/java/lang/invoke/MethodType.class] [loading /modules/java.base/java/io/InputStream.class] [loading /modules/java.base/java/lang/invoke/CallSite.class] [wrote /build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/GetFastaStats.class] [checking SizeFasta] [wrote /build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/SizeFasta.class] [checking SplitFastaByLetter] [wrote /build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/SplitFastaByLetter.class] [checking Utils] [loading /modules/java.base/java/lang/CloneNotSupportedException.class] [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/net/URI.class] [loading /modules/java.base/java/lang/Process.class] [loading /modules/java.base/java/lang/Runtime.class] [loading /modules/java.base/java/lang/StringBuilder.class] [loading /modules/java.base/java/lang/reflect/GenericDeclaration.class] [loading /modules/java.base/java/lang/reflect/AnnotatedElement.class] [loading /modules/java.base/java/lang/reflect/Type.class] [loading /modules/java.base/java/lang/AssertionError.class] [wrote /build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/Utils$Pair.class] [wrote /build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/Utils$Translate.class] [wrote /build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/Utils$ToProtein.class] [wrote /build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/Utils.class] [checking getScaffoldStats] [wrote /build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/getScaffoldStats$Scaffold.class] [wrote /build/iva-uQeaSv/iva-1.0.11+ds/iva/gage/getScaffoldStats.class] [total 1163ms] dh_auto_build -- I: pybuild base:232: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( Checking dependencies found in path: OK kmc OK kmc_dump OK nucmer OK delta-filter OK show-coords OK samtools OK smalt running build running build_py creating /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/__init__.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/assembly.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/common.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/contig.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/contig_trim.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/edge.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/egg_extract.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/external_progs.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/graph.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/kcount.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/kmers.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/kraken.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/mummer.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/qc.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/qc_external.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/read_trim.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/seed.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/seed_processor.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/test_data_runner.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva copying iva/mapping.py -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva creating /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/GetFastaStats.java -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/SizeFasta.java -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/SplitFastaByLetter.java -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/Utils.java -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/colsum.pl -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/getCorrectnessStats.sh -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/getMummerStats.sh -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/getScaffoldStats.java -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/GetFastaStats$ContigAt.class -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/GetFastaStats.class -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/SizeFasta.class -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/SplitFastaByLetter.class -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/Utils$Pair.class -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/Utils$Translate.class -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/Utils$ToProtein.class -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/Utils.class -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/getScaffoldStats$Scaffold.class -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage copying iva/gage/getScaffoldStats.class -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage creating /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt copying iva/ratt/main.ratt.pl -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt copying iva/ratt/ratt.config -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt copying iva/ratt/ratt.config.hiv -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt copying iva/ratt/ratt_correction.pm -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt copying iva/ratt/start.ratt.sh -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt copying iva/ratt/embl2gff.pl -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt copying iva/ratt/genbank2embl.pl -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt creating /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/read_trim copying iva/read_trim/adapters.fasta -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/read_trim creating /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data copying iva/test_run_data/hiv_pcr_primers.fa -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data copying iva/test_run_data/iva_contigs_no_trimmomatic.fasta -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data copying iva/test_run_data/iva_contigs_with_trimmomatic.fasta -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data copying iva/test_run_data/reads_1.fq.gz -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data copying iva/test_run_data/reads_2.fq.gz -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data copying iva/test_run_data/reference.fasta -> /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data running build_scripts creating build creating build/scripts-3.9 copying and adjusting scripts/iva -> build/scripts-3.9 copying and adjusting scripts/iva_qc -> build/scripts-3.9 copying and adjusting scripts/iva_qc_make_db -> build/scripts-3.9 changing mode of build/scripts-3.9/iva from 644 to 755 changing mode of build/scripts-3.9/iva_qc from 644 to 755 changing mode of build/scripts-3.9/iva_qc_make_db from 644 to 755 make[1]: Leaving directory '/build/iva-uQeaSv/iva-1.0.11+ds' debian/rules override_dh_auto_test make[1]: Entering directory '/build/iva-uQeaSv/iva-1.0.11+ds' python3 setup.py test Checking dependencies found in path: OK kmc OK kmc_dump OK nucmer OK delta-filter OK show-coords OK samtools OK smalt running test WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. running egg_info creating iva.egg-info writing iva.egg-info/PKG-INFO writing dependency_links to iva.egg-info/dependency_links.txt writing requirements to iva.egg-info/requires.txt writing top-level names to iva.egg-info/top_level.txt writing manifest file 'iva.egg-info/SOURCES.txt' reading manifest file 'iva.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'iva.egg-info/SOURCES.txt' running build_ext /build/iva-uQeaSv/iva-1.0.11+ds/iva/mapping.py:161: DeprecationWarning: invalid escape sequence \^ s = re.sub('\^.', '', s) /build/iva-uQeaSv/iva-1.0.11+ds/iva/external_progs.py:33: DeprecationWarning: invalid escape sequence \( 'kmc': ('kmc', re.compile('^K-Mer Counter \(KMC\) ver\. (.*) \(.*\)$')), /build/iva-uQeaSv/iva-1.0.11+ds/iva/external_progs.py:34: DeprecationWarning: invalid escape sequence \( 'kmc_dump': ('kmc_dump', re.compile('^KMC dump ver. (.*) \(.*\)$')), /build/iva-uQeaSv/iva-1.0.11+ds/iva/external_progs.py:37: DeprecationWarning: invalid escape sequence \( 'nucmer': ('nucmer --version', re.compile('^NUCmer \(NUCleotide MUMmer\) version (.*)$')), /build/iva-uQeaSv/iva-1.0.11+ds/iva/external_progs.py:38: DeprecationWarning: invalid escape sequence \( 'R': ('R --version', re.compile('^R version (.*) \(.*\) --')), /build/iva-uQeaSv/iva-1.0.11+ds/iva/external_progs.py:40: DeprecationWarning: invalid escape sequence \d 'samtools': ('samtools', re.compile('(\d+\.\d+[\.\d]*)')), /build/iva-uQeaSv/iva-1.0.11+ds/iva/kraken.py:360: DeprecationWarning: invalid escape sequence \. self._genbank2embl(fname, re.sub('\.gbk$', '', fname) + '.embl') /build/iva-uQeaSv/iva-1.0.11+ds/iva/kraken.py:415: DeprecationWarning: invalid escape sequence \W return re.sub('\W', '_', s).strip('_') test_contig_contained_in_nucmer_hits (assembly_test.TestAssembly) Test _contig_contained_in_nucmer_hits ... ok test_contig_names_size_order (assembly_test.TestAssembly) Test _contig_names_size_order ... ok test_contig_worth_extending (assembly_test.TestAssembly) Test _contig_worth_extending ... ok test_coords_to_new_contig (assembly_test.TestAssembly) Test _coords_to_new_contig ... ok test_extend_contigs_with_bam (assembly_test.TestAssembly) test _extend_contigs_with_bam ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/mapping_test.smalt.out.bam' ok test_get_contig_order_by_orfs (assembly_test.TestAssembly) Test get_contig_order_by_orfs ... ok test_get_ref_length (assembly_test.TestAssembly) Test _get_ref_length ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/assembly_test.mapped.bam' ok test_get_ref_length_sam_pair (assembly_test.TestAssembly) Test _get_ref_length_sam_pair ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/assembly_test.mapped.bam' ok test_get_unmapped_pairs (assembly_test.TestAssembly) Test _get_unmapped_pairs ... [E::idx_find_and_load] Could not retrieve index file for 'tmp.bam' ok test_good_intervals_from_strand_coverage (assembly_test.TestAssembly) Test good_intervals_from_strand_coverage ... ok test_init_and_write (assembly_test.TestAssembly) test assembly initialise and write to file ... ok test_map_reads (assembly_test.TestAssembly) test _map_reads ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/assembly_test.mapped.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.assembly_test.out.bam' ok test_merge_overlapping_contigs (assembly_test.TestAssembly) Test _merge_overlapping_contigs ... ok test_read_pair_extend (assembly_test.TestAssembly) Test read_pair_extend ... [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.1.1.map.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.1.2.map.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.1.3.map.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.1.4.map.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.1.5.map.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.2.1.map.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.2.2.map.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.2.3.map.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.2.4.map.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.2.5.map.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.3.1.map.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.3.2.map.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.4.1.map.bam' [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/tmp.filter_reads.k6rtit_f/out.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.extend.1.5.1.map.bam' [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/tmp.trim_strand_biased_ends.j9fkcgqs/out.unsorted.bam' ok test_remove_contained_contigs (assembly_test.TestAssembly) Test _remove_contained_contigs ... ok test_remove_contig (assembly_test.TestAssembly) Test _remove_contig ... ok test_remove_contig_from_nucmer_hits (assembly_test.TestAssembly) Test _remove_contig_from_nucmer_hits ... ok test_subcontigs_from_strand_bias (assembly_test.TestAssembly) Test _subcontigs_from_strand_bias ... ok test_trim_contig_for_strand_bias (assembly_test.TestAssembly) Test _trim_contig_for_strand_bias ... ok test_trim_contigs (assembly_test.TestAssembly) Test trim_contigs ... ok test_trim_strand_biased_ends (assembly_test.TestAssembly) Test _trim_strand_biased_ends ... ok test_worth_extending (assembly_test.TestAssembly) Test worth_extending ... ok test_add_left_kmer (contig_test.TestContig) Test add_left_kmer ... ok test_add_right_kmer (contig_test.TestContig) Test add_right_kmer ... ok test_extend (contig_test.TestContig) Test extend ... ok test_init (contig_test.TestContig) Test init ... ok test_len (contig_test.TestContig) Test len ... ok test_coverage_to_trimmed_coords (contig_trim_test.TestContigTrim) Test _coverage_to_trimmed_coords ... ok test_trim_ends (contig_trim_test.TestContigTrim) Test _trim_ends ... ok test_trim_primers_and_adapters (contig_trim_test.TestContigTrim) Test trim_primers_and_adapters ... ok test_change_hit_coords_with_intersection (edge_test.TestEdge) test test_change_hit_coords_with_intersection ... ok test_make_contig_first (edge_test.TestEdge) test make_contig_first ... ok test_make_contig_forwards (edge_test.TestEdge) test make_contig_forwards ... ok test_merge_into (edge_test.TestEdge) test merge_into ... ok test_open_end (edge_test.TestEdge) test open_end ... ok test_reverse (edge_test.TestEdge) test reverse ... ok test_copy_dir (egg_extract_test.TestEggExtract) test copy_dir ... ok test_copy_dir_unzipped (egg_extract_test.TestEggExtract) test copy_dir_unzipped ... ok test_copy_dir_zipped (egg_extract_test.TestEggExtract) test copy_dir_zipped ... ok test_copy_file (egg_extract_test.TestEggExtract) test copy_file ... ok test_copy_file_unzipped (egg_extract_test.TestEggExtract) test _copy_file_unzipped ... ok test_copy_file_zipped (egg_extract_test.TestEggExtract) test _copy_file_zipped ... ok test_init_and_write (egg_extract_test.TestEggExtract) test __init__ ... ok test_blastn_version (external_progs_test.TestExternalProgs) Test blastn version ... ok test_delta_filter_in_path (external_progs_test.TestExternalProgs) Test delta-filter in path ... ok test_kmc_dump_in_path (external_progs_test.TestExternalProgs) Test kmc_dump in path ... ok test_kmc_dump_version (external_progs_test.TestExternalProgs) Test kmc_dump version ... ok test_kmc_in_path (external_progs_test.TestExternalProgs) Test kmc in path ... ok test_kmc_version (external_progs_test.TestExternalProgs) Test kmc version ... ok test_makeblastdb_version (external_progs_test.TestExternalProgs) Test makeblastdb version ... ok test_nucmer_in_path (external_progs_test.TestExternalProgs) Test nucmer in path ... ok test_nucmer_version (external_progs_test.TestExternalProgs) Test nucmer version ... ok test_r_version (external_progs_test.TestExternalProgs) Test R versions ... ok test_samtools_in_path (external_progs_test.TestExternalProgs) Test samtools in path ... ok test_samtools_original_version (external_progs_test.TestExternalProgs) Test samtools original version ... ok test_samtools_version (external_progs_test.TestExternalProgs) Test samtools version ... ok test_show_coords_in_path (external_progs_test.TestExternalProgs) Test show-coords in path ... ok test_smalt_in_path (external_progs_test.TestExternalProgs) Test smalt in path ... ok test_smalt_version (external_progs_test.TestExternalProgs) Test smalt version ... ok test_add_and_get_edges (graph_test.TestGraph) test adding and getting edges ... ok test_connected_components (graph_test.TestGraph) test connected_components ... ok test_degree (graph_test.TestGraph) test degree ... ok test_edges_are_consistent (graph_test.TestGraph) test edges_are_consistent ... ok test_find_simple_path (graph_test.TestGraph) test find_simple_path ... ok test_get_nodes (graph_test.TestGraph) test get_nodes ... ok test_merged_coords_from_simple_nonredundant_path (graph_test.TestGraph) test merged_coords_from_simple_nonredundant_path ... ok test_node_to_coords (graph_test.TestGraph) test _node_to_coords ... ok test_remove_middle_node (graph_test.TestGraph) test remove_middle_node ... ok test_remove_node (graph_test.TestGraph) test remove_node ... ok test_remove_redundant_nodes_from_simple_path (graph_test.TestGraph) test remove_redundant_nodes_from_simple_path ... ok test_simple_path_is_consistent (graph_test.TestGraph) test simple_path_is_consistent ... ok test_counts_file_to_fasta (kcount_test.TestKcount) Test _counts_file_to_fasta ... ok test_head_fastaq_fa (kcount_test.TestKcount) Test head_fastaq with FASTA input ... ok test_head_fastaq_fq (kcount_test.TestKcount) Test head_fastaq with FASTQ input ... ok test_kmc_to_kmer_counts (kcount_test.TestKcount) Test _kmc_to_kmer_counts ... ok test_median (kcount_test.TestKcount) Test _median() ... ok test_append (kmers_test.TestKmers) Test append ... ok test_commonest_kmers (kmers_test.TestKmers) ... ok test_extend (kmers_test.TestKmers) Test extend ... ok test_extension (kmers_test.TestKmers) Test extension ... ok test_init (kmers_test.TestKmers) Test __init__ ... ok test_kmer_dict (kmers_test.TestKmers) Test kmer_dict ... ok test_append_to_file (kraken_test.TestKraken) test _append_to_file ... ok test_count_cds_from_embl (kraken_test.TestKraken) test count_cds_from_embl ... ok test_genbank_to_taxon_and_gi (kraken_test.TestKraken) test _genbank_to_taxon_and_gi ... ok test_get_most_common_species_dir (kraken_test.TestKraken) Test get_most_common_species ... ok test_get_parent_taxons (kraken_test.TestKraken) test _get_parent_taxons ... ok test_load_extra_ref_info (kraken_test.TestKraken) test _load_extra_ref_info ... ok test_replace_fasta_header (kraken_test.TestKraken) test _replace_fasta_header ... ok test_species_to_dir (kraken_test.TestKraken) test species_to_dir ... ok test_bam_file_to_fasta_pair_files (mapping_test.TestMapping) Test bam_file_to_fasta_pair_files ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/mapping_test.smalt.out.bam' ok test_bam_file_to_fasta_pair_files_region (mapping_test.TestMapping) Test bam_file_to_fasta_pair_files with a region ... ok test_bam_file_to_region_fasta (mapping_test.TestMapping) Test bam_file_to_region_fasta ... ok test_bam_to_fasta (mapping_test.TestMapping) Test bam_to_fasta ... ok test_can_extend (mapping_test.TestMapping) Test can_extend ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/mapping_test.smalt.out.bam' ok test_consensus_base (mapping_test.TestMapping) Test consensus_base ... ok test_consensus_base_both_strands (mapping_test.TestMapping) Test consensus_base_both_strands ... ok test_find_incorrect_ref_bases (mapping_test.TestMapping) Test find_incorrect_ref_bases ... ok test_get_bam_region_coverage_fwd (mapping_test.TestMapping) Test get_bam_region_coverage forward strand ... ok test_get_bam_region_coverage_fwd_And_rev (mapping_test.TestMapping) Test get_bam_region_coverage both strands ... ok test_get_bam_region_coverage_rev (mapping_test.TestMapping) Test get_bam_region_coverage reverse strand ... ok test_get_pair_type (mapping_test.TestMapping) Test get_pair_type ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/mapping_test.smalt.out.bam' ok test_get_ref_name (mapping_test.TestMapping) Test get_ref_name ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/mapping_test.smalt.out.bam' ok test_map_reads (mapping_test.TestMapping) Test mapping reads ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/mapping_test.smalt.out.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.out.bam' ok test_map_reads_and_sort (mapping_test.TestMapping) Test mapping reads and sort BAM ... ok test_map_reads_wth_flag (mapping_test.TestMapping) Test map_reads with required flag ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/mapping_test.smalt.out.flag12.bam' [E::idx_find_and_load] Could not retrieve index file for 'tmp.out.bam' ok test_remove_indels (mapping_test.TestMapping) Test _remove_indels ... ok test_sam_to_fasta (mapping_test.TestMapping) Test sam_to_fasta ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/mapping_test.smalt.out.bam' ok test_smalt_in_path (mapping_test.TestMapping) Test that samtools is in the user's path ... ok test_soft_clipped (mapping_test.TestMapping) Test soft_clipped ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/mapping_test.smalt.out.bam' ok test_strip_mpileup_coverage_string (mapping_test.TestMapping) Test strip_mpileup_coverage_string ... ok test_total_ref_length_from_bam (mapping_test.TestMapping) Test _total_ref_length_from_bam ... [E::idx_find_and_load] Could not retrieve index file for '/build/iva-uQeaSv/iva-1.0.11+ds/iva/tests/data/mapping_test.total_ref_length_from_bam.bam' ok test_file_read (mummer_test.TestMummer) test file_read ... ok test_is_at_ends (mummer_test.TestMummer) Test is_at_ends ... ok test_is_self_hit (mummer_test.TestMummer) Test is_self_hit ... ok test_on_same_strand (mummer_test.TestMummer) test on_same_strand ... ok test_qry_coords (mummer_test.TestMummer) Test qry_coords ... ok test_ref_coords (mummer_test.TestMummer) Test ref_coords ... ok test_run_nucmer (mummer_test.TestMummer) test run_nucmer ... ok test_sort (mummer_test.TestMummer) test sort ... ok test_swap (mummer_test.TestMummer) test swap ... ok test_to_graph_edge (mummer_test.TestMummer) Test to_graph_edge ... ok test_run_gage (qc_external_test.TestQcExternal) test run_gage ... ok test_run_ratt (qc_external_test.TestQcExternal) test run_ratt ... ok test_calculate_cds_assembly_stats (qc_test.TestQc) test _calculate_cds_assembly_stats ... ok test_calculate_contig_placement (qc_test.TestQc) test calculate_contig_placement ... ok test_calculate_ref_positions_covered_by_contigs (qc_test.TestQc) test _calculate_ref_positions_covered_by_contigs ... ok test_calculate_ref_read_coverage (qc_test.TestQc) test _calculate_ref_read_coverage ... ok test_calculate_ref_read_region_coverage (qc_test.TestQc) test _calculate_ref_read_region_coverage ... ok test_calculate_refseq_assembly_stats (qc_test.TestQc) test _calculate_refseq_assembly_stats ... ok test_calculate_should_have_assembled (qc_test.TestQc) test _calculate_should_have_assembled ... ok test_contig_placement_in_reference (qc_test.TestQc) test _contig_placement_in_reference ... ok test_contigs_and_bases_that_hit_ref (qc_test.TestQc) test _contigs_and_bases_that_hit_ref ... ok test_cov_to_R_string (qc_test.TestQc) test _cov_to_R_string ... ok test_coverage_list_to_low_cov_intervals (qc_test.TestQc) test _coverage_list_to_low_cov_intervals ... ok test_get_R_plot_contig_order_from_contig_placement (qc_test.TestQc) test _get_R_plot_contig_order_from_contig_placement ... ok test_get_contig_hits_to_reference (qc_test.TestQc) test _get_contig_hits_to_reference ... ok test_get_overlapping_qry_hits (qc_test.TestQc) test _get_overlapping_qry_hits ... ok test_get_ref_cds_from_gff (qc_test.TestQc) test _get_ref_cds_from_gff ... ok test_get_unique_and_repetitive_from_contig_hits (qc_test.TestQc) test _get_unique_and_repetitive_from_contig_hits ... ok test_gff_and_fasta_to_cds (qc_test.TestQc) test _gff_and_fasta_to_cds ... ok test_has_orf (qc_test.TestQc) test _has_orf ... ok test_hash_nucmer_hits_by_ref (qc_test.TestQc) test _hash_nucmer_hits_by_ref ... ok test_ids_in_order_from_fai (qc_test.TestQc) test _ids_in_order_from_fai ... ok test_invert_list (qc_test.TestQc) test _invert_list ... ok test_map_cds_to_assembly (qc_test.TestQc) test _map_cds_to_assembly ... ok test_mummer_coords_file_to_dict (qc_test.TestQc) test _mummer_coords_file_to_dict ... ok test_write_cds_seqs (qc_test.TestQc) test _write_cds_seqs ... ok test_write_fasta_contigs_hit_ref (qc_test.TestQc) test _write_fasta_contigs_hit_ref ... ok test_write_fasta_contigs_not_hit_ref (qc_test.TestQc) test _write_fasta_contigs_not_hit_ref ... ok test_write_ref_coverage_to_files_for_R (qc_test.TestQc) test _write_ref_coverage_to_files_for_R ... ok test_run_trimmomatic (read_trim_test.TestReadTrim) Test run_trimmomatic ... ok test_extend (seed_test.TestSeed) Test extend ... ok test_extend_with_reads_as_single_end (seed_test.TestSeed) Test _extend_with_reads_as_single_end ... ok test_extension_from_read (seed_test.TestSeed) Test _test_extension_from_read ... ok test_extensions_from_reads_file (seed_test.TestSeed) Test _extensions_from_reads_file ... ok test_init (seed_test.TestSeed) test init ... ok test_kmc_in_path (seed_test.TestSeed) Test that kmc is in the user's path ... ok test_len (seed_test.TestSeed) Test len ... ok test_write_fasta (seed_test.TestSeed) Test write_fasta ... ok ---------------------------------------------------------------------- Ran 160 tests in 14.326s OK make[1]: Leaving directory '/build/iva-uQeaSv/iva-1.0.11+ds' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/iva/ -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( Checking dependencies found in path: OK kmc OK kmc_dump OK nucmer OK delta-filter OK show-coords OK samtools OK smalt running install running build running build_py running build_scripts running install_lib creating /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr creating /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib creating /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9 creating /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages creating /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/__init__.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/assembly.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/common.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/contig.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/contig_trim.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/edge.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/egg_extract.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/external_progs.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/graph.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/kcount.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/kmers.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/kraken.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/mummer.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/qc.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/qc_external.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/read_trim.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/seed.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/seed_processor.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_data_runner.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/mapping.py -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva creating /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/GetFastaStats.java -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/SizeFasta.java -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/SplitFastaByLetter.java -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/Utils.java -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/colsum.pl -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/getCorrectnessStats.sh -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/getMummerStats.sh -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/getScaffoldStats.java -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/GetFastaStats$ContigAt.class -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/GetFastaStats.class -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/SizeFasta.class -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/SplitFastaByLetter.class -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/Utils$Pair.class -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/Utils$Translate.class -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/Utils$ToProtein.class -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/Utils.class -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/getScaffoldStats$Scaffold.class -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/gage/getScaffoldStats.class -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/gage creating /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/ratt copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt/main.ratt.pl -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/ratt copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt/ratt.config -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/ratt copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt/ratt.config.hiv -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/ratt copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt/ratt_correction.pm -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/ratt copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt/start.ratt.sh -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/ratt copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt/embl2gff.pl -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/ratt copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/ratt/genbank2embl.pl -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/ratt creating /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/read_trim copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/read_trim/adapters.fasta -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/read_trim creating /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/test_run_data copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data/hiv_pcr_primers.fa -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/test_run_data copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data/iva_contigs_no_trimmomatic.fasta -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/test_run_data copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data/iva_contigs_with_trimmomatic.fasta -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/test_run_data copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data/reads_1.fq.gz -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/test_run_data copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data/reads_2.fq.gz -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/test_run_data copying /build/iva-uQeaSv/iva-1.0.11+ds/.pybuild/cpython3_3.9_iva/build/iva/test_run_data/reference.fasta -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/test_run_data byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/__init__.py to __init__.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/assembly.py to assembly.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/common.py to common.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/contig.py to contig.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/contig_trim.py to contig_trim.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/edge.py to edge.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/egg_extract.py to egg_extract.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/external_progs.py to external_progs.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/graph.py to graph.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/kcount.py to kcount.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/kmers.py to kmers.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/kraken.py to kraken.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/mummer.py to mummer.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/qc.py to qc.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/qc_external.py to qc_external.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/read_trim.py to read_trim.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/seed.py to seed.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/seed_processor.py to seed_processor.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/test_data_runner.py to test_data_runner.cpython-39.pyc byte-compiling /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva/mapping.py to mapping.cpython-39.pyc running install_egg_info running egg_info writing iva.egg-info/PKG-INFO writing dependency_links to iva.egg-info/dependency_links.txt writing requirements to iva.egg-info/requires.txt writing top-level names to iva.egg-info/top_level.txt reading manifest file 'iva.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'iva.egg-info/SOURCES.txt' Copying iva.egg-info to /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/lib/python3.9/dist-packages/iva-1.0.9.egg-info Skipping SOURCES.txt running install_scripts creating /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/bin copying build/scripts-3.9/iva -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/bin copying build/scripts-3.9/iva_qc -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/bin copying build/scripts-3.9/iva_qc_make_db -> /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/bin changing mode of /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/bin/iva to 755 changing mode of /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/bin/iva_qc to 755 changing mode of /build/iva-uQeaSv/iva-1.0.11+ds/debian/iva/usr/bin/iva_qc_make_db to 755 dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/iva-uQeaSv/iva-1.0.11+ds' mkdir -p /build/iva-uQeaSv/iva-1.0.11+ds/debian/man PYTHONPATH=. help2man -N -o /build/iva-uQeaSv/iva-1.0.11+ds/debian/man/iva.1 \ -n 'iterative virus assembler' \ --no-discard-stderr ./scripts/iva PYTHONPATH=. help2man -N -o /build/iva-uQeaSv/iva-1.0.11+ds/debian/man/iva_qc.1 \ -n 'compare an assembly to a reference' \ --no-discard-stderr ./scripts/iva_qc PYTHONPATH=. help2man -N -o /build/iva-uQeaSv/iva-1.0.11+ds/debian/man/iva_qc_make_db.1 \ -n 'make a database as input for iva_qc' \ --no-discard-stderr ./scripts/iva_qc_make_db dh_installman -- make[1]: Leaving directory '/build/iva-uQeaSv/iva-1.0.11+ds' dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'iva' in '../iva_1.0.11+ds-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../iva_1.0.11+ds-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/iva-uQeaSv /tmp/iva-1.0.11+ds-1hj7q5915 I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_root W: deleting files in /tmp: hsperfdata_builduser I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.lnFQI1P4iq... I: success in 3144.3114 seconds md5: iva_1.0.11+ds-1_amd64.deb: OK sha1: iva_1.0.11+ds-1_amd64.deb: OK sha256: iva_1.0.11+ds-1_amd64.deb: OK Checksums: OK