Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/i/isospec/isospec_2.1.3-1+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/isospec-2.1.3-1+b1wwrm8alo/isospec_2.1.3-1+b1_amd64.buildinfo Get source package info: isospec=2.1.3-1 Source URL: http://snapshot.notset.fr/mr/package/isospec/2.1.3-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.121 apt=2.4.3 autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.38-3 binutils-common=2.38-3 binutils-x86-64-linux-gnu=2.38-3 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 cmake=3.22.1-1+b1 cmake-data=3.22.1-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-19 d-shlibs=0.104 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.6 debian-archive-keyring=2021.1.1 debianutils=5.7-0.1 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-exec=0.23.4 dh-python=5.20220215 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 doxygen=1.9.1-2 dpkg=1.21.4 dpkg-dev=1.21.4 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-3 findutils=4.9.0-2 fontconfig-config=2.13.1-4.4 fonts-dejavu-core=2.37-2 fonts-lmodern=2.005-1 fonts-mathjax=2.7.9+dfsg-1 fonts-urw-base35=20200910-1 g++=4:11.2.0-2 g++-11=11.2.0-19 gcc=4:11.2.0-2 gcc-11=11.2.0-19 gcc-11-base=11.2.0-19 gcc-12-base=12-20220319-1 gettext=0.21-6 gettext-base=0.21-6 ghostscript=9.55.0~dfsg-3 gpgv=2.2.27-3+b1 graphicsmagick=1.4+really1.3.38-1 graphicsmagick-imagemagick-compat=1.4+really1.3.38-1 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaom3=3.3.0-1 libapache-pom-java=18-1 libapt-pkg6.0=2.4.3 libarchive-zip-perl=1.68-1 libarchive13=3.5.2-1 libasan6=11.2.0-19 libatomic1=12-20220319-1 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbinutils=2.38-3 libblkid1=2.37.3-1+b1 libbrotli1=1.0.9-2+b3 libbsd0=0.11.5-1+b1 libbz2-1.0=1.0.8-5 libc-bin=2.33-7 libc-dev-bin=2.33-7 libc6=2.33-7 libc6-dev=2.33-7 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=12-20220319-1 libclang-cpp11=1:11.1.0-6+b1 libclang1-11=1:11.1.0-6+b1 libcom-err2=1.46.5-2 libcommons-logging-java=1.2-2 libcommons-parent-java=43-1 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-3 libctf0=2.38-3 libcups2=2.4.1op1-2 libcurl4=7.82.0-2 libdav1d5=0.9.2-1+b1 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.14.0-1 libde265-0=1.0.8-1 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdeflate0=1.10-2 libdpkg-perl=1.21.4 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.7-1 libexpat1-dev=2.4.7-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libfontbox-java=1:1.8.16-2 libfontconfig1=2.13.1-4.4 libfreetype6=2.11.1+dfsg-1 libgcc-11-dev=11.2.0-19 libgcc-s1=12-20220319-1 libgcrypt20=1.9.4-5 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libglib2.0-0=2.72.0-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.3-4+b1 libgomp1=12-20220319-1 libgpg-error0=1.43-3 libgraphicsmagick-q16-3=1.4+really1.3.38-1 libgraphite2-3=1.3.14-1 libgs9=9.55.0~dfsg-3 libgs9-common=9.55.0~dfsg-3 libgssapi-krb5-2=1.19.2-2+b1 libharfbuzz0b=2.7.4-1 libheif1=1.12.0-2+b3 libhogweed6=3.7.3-1 libice6=2:1.0.10-1 libicu67=67.1-7 libidn12=1.38-4 libidn2-0=2.3.2-2 libijs-0.35=0.35-15 libisl23=0.24-2 libitm1=12-20220319-1 libjbig0=2.1-3.1+b2 libjbig2dec0=0.19-3 libjpeg62-turbo=1:2.1.2-1 libjs-jquery=3.6.0+dfsg+~3.5.13-1 libjs-mathjax=2.7.9+dfsg-1 libjs-sphinxdoc=4.3.2-1 libjs-underscore=1.13.2~dfsg-2 libjsoncpp25=1.9.5-3 libk5crypto3=1.19.2-2+b1 libkeyutils1=1.6.1-3 libkpathsea6=2021.20210626.59705-1 libkrb5-3=1.19.2-2+b1 libkrb5support0=1.19.2-2+b1 liblcms2-2=2.12~rc1-2 libldap-2.5-0=2.5.11+dfsg-1 libllvm11=1:11.1.0-6+b1 liblsan0=12-20220319-1 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-3 libmagic1=1:5.41-3 libmd0=1.0.4-1 libmount1=2.37.3-1+b1 libmpc3=1.2.1-2 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.3-2 libncursesw6=6.3-2 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma1=2.0.14-3 libopenjp2-7=2.4.0-6 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libpdfbox-java=1:1.8.16-2 libperl5.34=5.34.0-3 libpipeline1=1.5.5-1 libpixman-1-0=0.40.0-1 libpng16-16=1.6.37-3 libprocps8=2:3.3.17-7+b1 libpsl5=0.21.0-1.2 libptexenc1=2021.20210626.59705-1 libpython3-dev=3.10.4-1 libpython3-stdlib=3.10.4-1 libpython3.10=3.10.4-1 libpython3.10-dev=3.10.4-1 libpython3.10-minimal=3.10.4-1 libpython3.10-stdlib=3.10.4-1 libquadmath0=12-20220319-1 libreadline8=8.1.2-1 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.28+dfsg-2+b1 libsasl2-modules-db=2.1.28+dfsg-2+b1 libseccomp2=2.5.3-2 libselinux1=3.3-1+b2 libsemanage-common=3.3-1 libsemanage2=3.3-1+b2 libsepol2=3.3-1 libsigsegv2=2.14-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.3-1+b1 libsqlite3-0=3.38.1-1 libssh2-1=1.10.0-3 libssl1.1=1.1.1n-1 libstdc++-11-dev=11.2.0-19 libstdc++6=12-20220319-1 libsub-override-perl=0.09-2 libsynctex2=2021.20210626.59705-1 libsystemd0=250.4-1 libtasn1-6=4.18.0-4 libteckit0=2.5.11+ds1-1 libtexlua53=2021.20210626.59705-1 libtexluajit2=2021.20210626.59705-1 libtiff5=4.3.0-6 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-2 libtsan0=11.2.0-19 libubsan1=12-20220319-1 libuchardet0=0.0.7-1 libudev1=250.4-1 libunistring2=1.0-1 libuuid1=2.37.3-1+b1 libuv1=1.44.1-2 libwebp7=1.2.2-2+b1 libwebpmux3=1.2.2-2+b1 libwmflite-0.2-7=0.2.12-5 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libx265-199=3.5-2 libxapian30=1.4.18-4 libxau6=1:1.0.9-1 libxaw7=2:1.0.14-1 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxi6=2:1.8-1 libxml2=2.9.13+dfsg-1 libxmu6=2:1.1.3-3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxt6=1:1.2.1-1 libxxhash0=0.8.1-1 libz3-4=4.8.12-1+b1 libzstd1=1.4.9+dfsg-1 libzzip-0-13=0.13.72+dfsg.1-1.1 linux-libc-dev=5.16.14-1 login=1:4.11.1+dfsg1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3+b1 media-types=7.0.0 ncurses-base=6.3-2 ncurses-bin=6.3-2 passwd=1:4.11.1+dfsg1-2 patch=2.7.6-7 perl=5.34.0-3 perl-base=5.34.0-3 perl-modules-5.34=5.34.0-3 po-debconf=1.0.21+nmu1 poppler-data=0.4.11-1 preview-latex-style=12.2-1 procps=2:3.3.17-7+b1 python3=3.10.4-1 python3-cffi=1.15.0-1 python3-cffi-backend=1.15.0-1+b1 python3-dev=3.10.4-1 python3-distutils=3.9.12-1 python3-lib2to3=3.9.12-1 python3-minimal=3.10.4-1 python3-pkg-resources=59.6.0-1.2 python3-ply=3.11-5 python3-pycparser=2.21-1 python3-setuptools=59.6.0-1.2 python3.10=3.10.4-1 python3.10-dev=3.10.4-1 python3.10-minimal=3.10.4-1 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 t1utils=1.41-4 tar=1.34+dfsg-1 tex-common=6.17 texlive-base=2021.20220204-1 texlive-binaries=2021.20210626.59705-1 texlive-font-utils=2021.20220204-1 texlive-fonts-recommended=2021.20220204-1 texlive-latex-base=2021.20220204-1 texlive-latex-extra=2021.20220204-1 texlive-latex-recommended=2021.20220204-1 texlive-pictures=2021.20220204-1 texlive-plain-generic=2021.20220204-1 ucf=3.0043 util-linux=2.37.3-1+b1 x11-common=1:7.7+23 xdg-utils=1.1.3-4.1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220328T160411Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d isospec=2.1.3-1 && mkdir -p /build/isospec-wY2c7y && dpkg-source --no-check -x /*.dsc /build/isospec-wY2c7y/isospec-2.1.3 && cd /build/isospec-wY2c7y/isospec-2.1.3 && { printf '%s' 'isospec (2.1.3-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.10 as default -- all / amd64 / i386 Build Daemon (x86-conova-01) Mon, 28 Mar 2022 08:26:37 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/isospec-wY2c7y" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/isospec-wY2c7y/isospec-2.1.3 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1648455997" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/isospec-wY2c7y /tmp/isospec-2.1.3-1+b1wwrm8alo bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220328T160411Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.PzgiuQg2kD as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.PzgiuQg2kD Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220328T160411Z unstable/main amd64 libfakeroot amd64 1.28-1 [48.2 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220328T160411Z unstable/main amd64 fakeroot amd64 1.28-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (830 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4702 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.28-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.28-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.28-1_amd64.deb ... Unpacking fakeroot (1.28-1) ... Setting up libfakeroot:amd64 (1.28-1) ... Setting up fakeroot (1.28-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220328T160411Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.PzgiuQg2kD Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220328T160411Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 19s (1183 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.PzgiuQg2kD I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d isospec=2.1.3-1 && mkdir -p /build/isospec-wY2c7y && dpkg-source --no-check -x /*.dsc /build/isospec-wY2c7y/isospec-2.1.3 && cd /build/isospec-wY2c7y/isospec-2.1.3 && { printf '%s' 'isospec (2.1.3-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.10 as default -- all / amd64 / i386 Build Daemon (x86-conova-01) Mon, 28 Mar 2022 08:26:37 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/isospec-wY2c7y"' exec /tmp/mmdebstrap.PzgiuQg2kD Reading package lists... NOTICE: 'isospec' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/isospec.git Please use: git clone https://salsa.debian.org/debichem-team/isospec.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2199 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main isospec 2.1.3-1 (dsc) [2463 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main isospec 2.1.3-1 (tar) [2164 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main isospec 2.1.3-1 (diff) [33.2 kB] Fetched 2199 kB in 2s (1211 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'isospec_2.1.3-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting isospec in /build/isospec-wY2c7y/isospec-2.1.3 dpkg-source: info: unpacking isospec_2.1.3.orig.tar.gz dpkg-source: info: unpacking isospec_2.1.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Ensure-the-header-files-are-found-in-the-system.patch dpkg-source: info: applying 0002-Remove-the-mtune-native-march-native.patch dpkg-source: info: applying 0003-cmake-directive-avoid-rpath.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/isospec-wY2c7y/isospec-2.1.3 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1648455997" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.PzgiuQg2kD dpkg-buildpackage: info: source package isospec dpkg-buildpackage: info: source version 2.1.3-1+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh clean --with python3 debian/rules override_dh_clean make[1]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core rm -rf obj-x86_64-linux-gnu # The setup.py script immediately creates that link which # makes the package building to stop because it finds that # the source tree has changed. So, first remove that link, # that we'll recreate when we need it later, in the # override_dh_auto_build target. rm -rf IsoSpecPy/IsoSpec++ rm -rf .pybuild/ rm -rf tmp-install/ rm -rf IsoSpec++/IsoSpec++ rm -rf IsoSpecPy/build/ rm -rf man/html/ rm -rf man/latex/ rm -rf man/man/ # Now the default target dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2.substvars debian/python3-isospec.substvars debian/libisospec\+\+-doc.substvars debian/files rm -fr -- debian/libisospec\+\+-dev/ debian/tmp/ debian/libisospec\+\+2/ debian/python3-isospec/ debian/libisospec\+\+-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3' debian/rules build-arch dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh build-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh_auto_configure -O--buildsystem=pybuild --sourcedirectory=IsoSpecPy install -d /build/isospec-wY2c7y/isospec-2.1.3/debian/.debhelper/generated/_source/home pybuild --configure -i python{version} -p 3.10 --dir IsoSpecPy I: pybuild base:237: python3.10 setup.py config running config dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 install -d obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/isospec-wY2c7y/isospec-2.1.3 -- CMAKE_BINARY_DIR: /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [No such file or directory]. gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [No such file or directory]. -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY -- Build files have been written to: /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/isospec-wY2c7y/isospec-2.1.3 -- CMAKE_BINARY_DIR: /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [No such file or directory]. gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [No such file or directory]. -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done -- Generating done -- Build files have been written to: /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu dh override_dh_auto_configure --with python3 make[1]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3' rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+2.debhelper.log debian/python3-isospec.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh_auto_configure -O--buildsystem=pybuild --sourcedirectory=IsoSpecPy pybuild --configure -i python{version} -p 3.10 --dir IsoSpecPy I: pybuild base:237: python3.10 setup.py config running config dh_auto_build -O--buildsystem=pybuild --sourcedirectory=IsoSpecPy pybuild --build -i python{version} -p 3.10 --dir IsoSpecPy I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py creating /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy copying IsoSpecPy/Advanced.py -> /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy copying IsoSpecPy/Distributions.py -> /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy copying IsoSpecPy/Formulas.py -> /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy copying IsoSpecPy/IsoSpecPy.py -> /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy copying IsoSpecPy/IsoSpecPyOld.py -> /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy copying IsoSpecPy/PeriodicTbl.py -> /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy copying IsoSpecPy/__init__.py -> /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy copying IsoSpecPy/approximations.py -> /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy copying IsoSpecPy/confs_passthrough.py -> /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy copying IsoSpecPy/isoFFI.py -> /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy running build_ext building 'IsoSpecCppPy' extension creating build creating build/temp.linux-x86_64-3.10 creating build/temp.linux-x86_64-3.10/IsoSpec++ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/isospec-wY2c7y/isospec-2.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c IsoSpec++/unity-build.cpp -o build/temp.linux-x86_64-3.10/IsoSpec++/unity-build.o -O3 -std=c++17 x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/isospec-wY2c7y/isospec-2.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/IsoSpec++/unity-build.o -o /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecCppPy.cpython-310-x86_64-linux-gnu.so dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/isospec-wY2c7y/isospec-2.1.3 -- CMAKE_BINARY_DIR: /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [No such file or directory]. gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [No such file or directory]. -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done -- Generating done -- Build files have been written to: /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/isospec-wY2c7y/isospec-2.1.3 -B/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/CMakeFiles /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend make[4]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-wY2c7y/isospec-2.1.3 /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++ /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++ /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-wY2c7y/isospec-2.1.3 /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++ /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++ /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build make[4]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' [ 25%] Building CXX object IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++ && /usr/bin/c++ -DIsoSpec___shared_EXPORTS -I/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++ -I/build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++ -g -O2 -ffile-prefix-map=/build/isospec-wY2c7y/isospec-2.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-unknown-pragmas -Wall -Wextra -pedantic -std=gnu++17 -MD -MT IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -c /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/unity-build.cpp [ 50%] Building CXX object IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++ && /usr/bin/c++ -I/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++ -I/build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++ -g -O2 -ffile-prefix-map=/build/isospec-wY2c7y/isospec-2.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -Wall -Wextra -pedantic -std=gnu++17 -MD -MT IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -c /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/unity-build.cpp [ 75%] Linking CXX static library libIsoSpec++.a cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++ && /usr/bin/cmake -P CMakeFiles/IsoSpec++-static.dir/cmake_clean_target.cmake cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-static.dir/link.txt --verbose=1 /usr/bin/ar qc libIsoSpec++.a CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o /usr/bin/ranlib libIsoSpec++.a make[4]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' [ 75%] Built target IsoSpec++-static [100%] Linking CXX shared library libIsoSpec++.so cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/isospec-wY2c7y/isospec-2.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libIsoSpec++.so.2 -o libIsoSpec++.so.2.1.3 CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++ && /usr/bin/cmake -E cmake_symlink_library libIsoSpec++.so.2.1.3 libIsoSpec++.so.2 libIsoSpec++.so make[4]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' [100%] Built target IsoSpec++-shared make[3]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/isospec-wY2c7y/isospec-2.1.3 -- CMAKE_BINARY_DIR: /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [No such file or directory]. gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [No such file or directory]. -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done -- Generating done -- Build files have been written to: /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu # Generate the dev-doc in the man/hml and man/latex directories #doxygen man/doxyfile dh_auto_build -O--buildsyste=cmake -- html_doc cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" html_doc VERBOSE=1 make[2]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/isospec-wY2c7y/isospec-2.1.3 -B/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 html_doc make[3]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/isospec-wY2c7y/isospec-2.1.3 -B/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/html_doc.dir/all make[4]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/depend make[5]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-wY2c7y/isospec-2.1.3 /build/isospec-wY2c7y/isospec-2.1.3/man /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/man /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/man/CMakeFiles/html_doc.dir/DependInfo.cmake --color= make[5]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/build make[5]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' [100%] Doxygen-based developer html documentation generation cd /build/isospec-wY2c7y/isospec-2.1.3/man && doxygen doxyfile warning: Tag 'TCL_SUBST' at line 248 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: ignoring unsupported tag 'CLANG_COMPILATION_DATABASE_PATH' at line 1102, file doxyfile warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1120 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2193 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2215 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++ Reading and parsing tag files Parsing files Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/cwrapper.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/cwrapper.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/cwrapper.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/cwrapper.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/mman.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/mman.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/mman.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/mman.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.cpp... Parsing file /buil/build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h:33: warning: Compound IsoSpec::Allocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:53: warning: Compound IsoSpec::ConfEqual is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:75: warning: Compound IsoSpec::ConfOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:87: warning: Compound IsoSpec::ConfOrderMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:102: warning: Compound IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:25: warning: Compound IsoSpec::DirtyAllocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:35: warning: Compound IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:439: warning: Compound IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:542: warning: Compound IsoSpec::IsoStochasticGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:28: warning: Compound IsoSpec::KeyHasher is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:141: warning: Compound IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h:24: warning: Compound IsoSpec::ProbAndConfPtr is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:117: warning: Compound IsoSpec::ReverseOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:26: warning: Compound IsoSpec::SSummator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:76: warning: Compound IsoSpec::Summator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:99: warning: Compound IsoSpec::TSummator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:124: warning: Compound IsoSpec::TableOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:30: warning: Compound pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:379: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command d/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/platform.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/platform.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/platform_incl.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/platform_incl.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/unity-build.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/unity-build.cpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/cwrapper.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/cwrapper.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp../build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:159: warning: Member iterator (typedef) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:160: warning: Member const_iterator (typedef) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:161: warning: Member value_type (typedef) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:162: warning: Member size_type (typedef) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:163: warning: Member reference (typedef) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:164: warning: Member const_reference (typedef) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:41: warning: Member pod_vector(size_t initial_size=16) (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:53: warning: Member pod_vector(pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:63: warning: Member pod_vector(unsafe_pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:70: warning: Member fast_reserve(size_t n) (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:81: warning: Member reserve(size_t n) (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:87: warning: Member nocheck_push_back(const T &val) noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:94: warning: Member push_back(const T &val) (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:102: warning: Member operator[](size_t n) noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:108: warning: Member operator[](size_t n) const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:114: warning: Member size() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:119: warning: Member capacity() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:124: warning: Member data() noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:129: warning: Member data() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:134: warning: Member empty() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:139: warning: Member back() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:145: warning: Member pop_back() noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:152: warning: Member swap(pod_vector< T > &other) noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:166: warning: Member begin() noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:167: warning: Member begin() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:168: warning: Member cbegin() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:169: warning: Member end() noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:170: warning: Member end() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:171: warning: Member cend() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:173: warning: Member front() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:179: warning: Member clear() (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:337: warning: Member iterator (typedef) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:338: warning: Member const_iterator (typedef) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:339: warning: Member value_type (typedef) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:340: warning: Member size_type (typedef) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:341: warning: Member reference (typedef) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:342: warning: Member const_reference (typedef) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:203: warning: Member init() (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:205: warning: Member init(size_t initial_size) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:217: warning: Member unsafe_pod_vector(unsafe_pod_vector< T > &&other) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:224: warning: Member free() (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:226: warning: Member fast_reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:237: warning: Member reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:243: warning: Member resize(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:257: warning: Member resize_and_wipe(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:265: warning: Member nocheck_push_back(const T &val) noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:272: warning: Member push_back(const T &val) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:280: warning: Member operator[](size_t n) noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:286: warning: Member operator[](size_t n) const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:292: warning: Member size() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:297: warning: Member capacity() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:302: warning: Member data() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:307: warning: Member data() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:312: warning: Member empty() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:317: warning: Member back() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:323: warning: Member pop_back() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:330: warning: Member swap(pod_vector< T > &other) noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:344: warning: Member begin() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:345: warning: Member begin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:346: warning: Member cbegin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:347: warning: Member end() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:348: warning: Member end() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:349: warning: Member cend() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:351: warning: Member front() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:357: warning: Member clear() (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h:27: warning: Member RealType (typedef) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h:28: warning: Member IntType (typedef) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h:22: warning: Member Conf (typedef) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h:26: warning: Member copyConf(const T *source, T *destination, int dim) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h:77: warning: Member btrd(IntType _t, RealType p, IntType m, std::mt19937 &urng=random_gen) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h:160: warning: Member invert(IntType t, RealType p, std::mt19937 &urng=random_gen) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h:189: warning: Member boost_binomial_distribution_variate(IntType t_arg, RealType p_arg, std::mt19937 &urng=random_gen) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.h:33: warning: Member parse_fasta(const char *fasta, int atomCounts[6]) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp:134: warning: Member reorder_array(T *arr, size_t *order, size_t size, bool can_destroy=false) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:23: warning: Member release_g_lfact_table() (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:32: warning: Member alloc_lfact_table() (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:47: warning: Member RationalApproximation(double t) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:57: warning: Member NormalCDFInverse(double p) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:65: warning: Member NormalCDFInverse(double p, double mean, double stdev) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:70: warning: Member NormalCDF(double x, double mean, double stdev) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:95: warning: Member NormalPDF(double x, double mean, double stdev) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:104: warning: Member LowerIncompleteGamma2(int a, double x) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:131: warning: Member InverseLowerIncompleteGamma2(int a, double x) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:150: warning: Member random_gen(random_dev()) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:151: warning: Member stdunif(0.0, 1.0) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:153: warning: Member rdvariate_binom(size_t tries, double succ_prob, std::mt19937 &rgen) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h:68: warning: Member InverseChiSquareCDF2(int k, double x) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h:76: warning: Member rdvariate_beta_1_b(double b, std::mt19937 &rgen=random_gen) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.cpp:355: warning: Member parse_formula(const char *formula, std::vector< double > &isotope_masses, std::vector< double > &isotope_probabilities, int **isotopeNumbers, int **atomCounts, unsigned int *confSize, bool use_nominal_masses) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp:149: warning: Member get_loggamma_nominator(int x) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp:156: warning: Member verify_atom_cnt(int atomCnt) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.cpp:28: warning: Member quickselect(void **array, int n, int start, int end) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:29: warning: Member combinedSum(const int *conf, const std::vector< double > **valuesContainer, int dimNumber) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:38: warning: Member combinedSum(const int *conf, const pod_vector< double > **valuesContainer, int dimNumber) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:47: warning: Member getConf(void *conf) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:54: warning: Member getLProb(void *conf) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:61: warning: Member unnormalized_logProb(const int *conf, const double *logProbs, int dim) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:71: warning: Member calc_mass(const int *conf, const double *masses, int dim) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:85: warning: Member printArray(const T *array, int size, const char *prefix="") (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:94: warning: Member printVector(const std::vector< T > &vec) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:99: warning: Member printOffsets(const T **array, int size, const T *offset, const char *prefix="") (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:108: warning: Member printNestedArray(const T **array, const int *shape, int size) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:133: warning: Member dealloc_table(T *tbl, int dim) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:142: warning: Member realloc_append(T **array, T what, size_t old_array_size) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:151: warning: Member get_order(T *order_array, size_t N) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:162: warning: Member get_inverse_order(T *order_array, size_t N) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:173: warning: Member impose_order(size_t *O, size_t N, TA *A, TB *B) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:26: warning: Member isospec_number_of_isotopic_entries (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:28: warning: Member elem_table_ID[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:325: warning: Member elem_table_atomicNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:621: warning: Member elem_table_mass[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:917: warning: Member elem_table_massNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:1213: warning: Member elem_table_extraNeutrons[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:1509: warning: Member elem_table_element[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:1805: warning: Member elem_table_symbol[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:2101: warning: Member elem_table_Radioactive[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:2397: warning: Member elem_table_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:2693: warning: Member elem_table_log_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp:25: warning: Member aa_isotope_numbers[6] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp:27: warning: Member aa_elem_masses[19] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp:37: warning: Member aa_elem_nominal_masses[19] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp:47: warning: Member aa_elem_probabilities[19] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp:57: warning: Member aa_symbol_to_elem_counts[256 *6] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:44: warning: Member g_lfact_table (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:102: warning: Member sqrt_pi (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:149: warning: Member random_dev (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h:53: warning: Member pi (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h:54: warning: Member logpi (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h:73: warning: Member random_gen (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h:74: warning: Member stdunif (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp:50: warning: The following parameters of IsoSpec::writeInitialConfiguration(const int atomCnt, const int isotopeNo, const double *lprobs, int *res) are not documented: parameter 'isotopeNo' parameter 'lprobs' parameter 'res' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h:42: warning: Member Allocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::Allocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h:48: warning: Member shiftTables() (function) of class IsoSpec::Allocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h:50: warning: Member newConf() (function) of class IsoSpec::Allocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h:60: warning: Member makeCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h:30: warning: Member ProbAndConfPtr(double p, Conf c) (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h:32: warning: Member operator<(const ProbAndConfPtr &other) const (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h:27: warning: Member first (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h:28: warning: Member second (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:36: warning: Member DirtyAllocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:42: warning: Member shiftTables() (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:44: warning: Member newConf() (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:65: warning: Member FixedEnvelope(const FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:66: warning: Member FixedEnvelope(FixedEnvelope &&other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:68: warning: Member FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:77: warning: Member operator+(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:78: warning: Member operator*(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:80: warning: Member confs_no() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:81: warning: Member getAllDim() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:83: warning: Member masses() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:84: warning: Member probs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:85: warning: Member confs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:87: warning: Member release_masses() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:88: warning: Member release_probs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:89: warning: Member release_confs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:92: warning: Member mass(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:93: warning: Member prob(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:94: warning: Member conf(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:96: warning: Member sort_by_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:97: warning: Member sort_by_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:99: warning: Member get_total_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:100: warning: Member scale(double factor) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:101: warning: Member normalize() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:103: warning: Member empiric_average_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:104: warning: Member empiric_variance() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:105: warning: Member empiric_stddev() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:107: warning: Member WassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:108: warning: Member OrientedWassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:114: warning: Member bin(double bin_width=1.0, double middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:159: warning: Member threshold_init(Iso &&iso, double threshold, bool absolute) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:161: warning: Member addConfILG(const GenType &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:170: warning: Member total_prob_init(Iso &&iso, double target_prob, bool trim) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:205: warning: Member stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:110: warning: Member LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:111: warning: Member LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:172: warning: Member FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:183: warning: Member FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:188: warning: Member FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:200: warning: Member FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:207: warning: Member FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:219: warning: Member FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:224: warning: Member Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:225: warning: Member Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:121: warning: Member store_conf(const T &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:128: warning: Member store_conf(double _mass, double _prob) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:141: warning: Member swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:155: warning: Member reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:156: warning: Member slow_reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:37: warning: Member _masses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:38: warning: Member _probs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:39: warning: Member _confs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:40: warning: Member _confs_no (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:41: warning: Member allDim (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:42: warning: Member sorted_by_mass (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:43: warning: Member sorted_by_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:44: warning: Member total_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:45: warning: Member current_size (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:46: warning: Member tmasses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:47: warning: Member tprobs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:48: warning: Member tconfs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:49: warning: Member allDimSizeofInt (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:110: warning: Found unknown command '\use_nominal_masses' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:111: warning: Found unknown command '\add_water' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:113: warning: The following parameters of IsoSpec::Iso::FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true) are not documented: parameter 'use_nominal_masses' parameter 'add_water' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:339: warning: argument 'tabSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:339: warning: argument 'hashSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:346: warning: The following parameters of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) are not documented: parameter '_tabSize' parameter '_hashSize' parameter 'reorder_marginals' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:483: warning: Member get_currentLThreshold() const (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:485: warning: Member IsoLayeredGenerator(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:499: warning: Member advanceToNextConfigurationWithinLayer() (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:534: warning: Member nextLayer(double offset) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:553: warning: Member IsoStochasticGenerator(Iso &&iso, size_t no_molecules, double precision=0.9999, double beta_bias=5.0) (function) of class IsoSpec::IsoStochasticGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:555: warning: Member count() const (function) of class IsoSpec::IsoStochasticGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:226: warning: Member conf_lprobs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:227: warning: Member conf_masses() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:228: warning: Member confs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:195: warning: The following parameter of IsoSpec::MarginalTrek::MarginalTrek(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:247: warning: Member configurations (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:248: warning: Member confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:249: warning: Member no_confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:250: warning: Member masses (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:251: warning: Member lProbs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:252: warning: Member probs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:253: warning: Member allocator (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:257: warning: argument 'Marginal' of command @param is not found in the argument list of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:263: warning: The following parameters of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) are not documented: parameter 'm' parameter 'tabSize' parameter 'hashSize' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:379: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:364: warning: The following parameter of IsoSpec::LayeredMarginal::LayeredMarginal(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:374: warning: The following parameter of IsoSpec::LayeredMarginal::extend(double new_threshold, bool do_sort=true) is not documented: parameter 'do_sort' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:34: warning: Member KeyHasher(int dim) (function) of class IsoSpec::KeyHasher is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:36: warning: Member operator()(const int *conf) const noexcept (function) of class IsoSpec::KeyHasher is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:59: warning: Member ConfEqual(int dim) (function) of class IsoSpec::ConfEqual is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:61: warning: Member operator()(const int *conf1, const int *conf2) const (function) of class IsoSpec::ConfEqual is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:79: warning: Member operator()(void *conf1, void *conf2) const (function) of class IsoSpec::ConfOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:93: warning: Member ConfOrderMarginal(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:95: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:108: warning: Member ConfOrderMarginalDescending(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:110: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:121: warning: Member operator()(const T a, const T b) const (function) of class IsoSpec::ReverseOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:128: warning: Member TableOrder(const T *_tbl) (function) of class IsoSpec::TableOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:129: warning: Member operator()(unsigned int i, unsigned int j) (function) of class IsoSpec::TableOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:145: warning: Member OrderMarginalsBySizeDecresing(T const *const *const MT_) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:146: warning: Member operator()(int m1, int m2) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:35: warning: Member SSummator(const SSummator &other) (function) of class IsoSpec::SSummator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:39: warning: Member add(double x) (function) of class IsoSpec::SSummator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:61: warning: Member get() (function) of class IsoSpec::SSummator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:85: warning: Member add(double what) (function) of class IsoSpec::Summator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:93: warning: Member get() (function) of class IsoSpec::Summator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:107: warning: Member add(double what) (function) of class IsoSpec::TSummator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:111: warning: Member get() (function) of class IsoSpec::TSummator is not documented. . Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/mman.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/mman.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/platform.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/platform_incl.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/unity-build.cpp... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound pod_vector... Generating docs for compound unsafe_pod_vector... Generating namespace index... Generating docs for namespace IsoSpec Generating docs for compound IsoSpec::Allocator... Generating docs for compound IsoSpec::ProbAndConfPtr... Generating docs for compound IsoSpec::DirtyAllocator... Generating docs for compound IsoSpec::FixedEnvelope... Generating docs for compound IsoSpec::Iso... Generating docs for compound IsoSpec::IsoGenerator... Generating docs for compound IsoSpec::IsoOrderedGenerator... Generating docs for compound IsoSpec::IsoThresholdGenerator... Generating docs for compound IsoSpec::IsoLayeredGenerator... Generating docs for compound IsoSpec::IsoStochasticGenerator... Generating docs for compound IsoSpec::Marginal... Generating docs for compound IsoSpec::MarginalTrek... Generating docs for compound IsoSpec::PrecalculatedMarginal... Generating docs for compound IsoSpec::LayeredMarginal... Generating docs for compound IsoSpec::KeyHasher... Generating docs for compound IsoSpec::ConfEqual... Generating docs for compound IsoSpec::ConfOrder... Generating docs for compound IsoSpec::ConfOrderMarginal... Generating docs for compound IsoSpec::ConfOrderMarginalDescending... Generating docs for compound IsoSpec::ReverseOrder... Generating docs for compound IsoSpec::TableOrder... Generating docs for compound IsoSpec::OrderMarginalsBySizeDecresing... Generating docs for compound IsoSpec::SSummator... Generating docs for compound IsoSpec::Summator... Generating docs for compound IsoSpec::TSummator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... 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LaTeX Warning: Reference `class_iso_spec_1_1_table_order' on page 5 undefined o n input line 27. LaTeX Warning: Reference `class_iso_spec_1_1_t_summator' on page 5 undefined on input line 28. LaTeX Warning: Reference `classunsafe__pod__vector' on page 5 undefined on inpu t line 29. ) [5] [6] Chapter 4. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [7] [8] Overfull \hbox (157.29202pt too wide) in paragraph at lines 255--258 [][] \T1/phv/m/n/10 const dou-ble \T1/phv/b/n/10 logpi \T1/phv/m/n/10 = 1.[]144 7298858494001741434273513530587116472948129153115715136230714721377698848260797 83623270275489708 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [9] Package longtable Warning: Column widths have changed (longtable) in table 4.1 on input line 304. [10]) [11] [12] Chapter 5. (./class_iso_spec_1_1_allocator.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [7] [8] Overfull \hbox (157.29202pt too wide) in paragraph at lines 255--258 [][] \T1/phv/m/n/10 const dou-ble \T1/phv/b/n/10 logpi \T1/phv/m/n/10 = 1.[]144 7298858494001741434273513530587116472948129153115715136230714721377698848260797 83623270275489708 [9] Package longtable Warning: Column widths have changed (longtable) in table 4.1 on input line 304. [10]) [11] [12] Chapter 5. (./class_iso_spec_1_1_allocator.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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Check if current package is valid. ) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty (/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty) (/usr/share/texlive/texmf-dist/tex/latex/caption/ltcaption.sty)) (/usr/share/texlive/texmf-dist/tex/latex/etoc/etoc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./refman.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./refman.out) (./refman.out) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texlive/texmf-dist/tex/latex/wasysym/uwasy.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2] [3] [4] Chapter 1. (./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [7] [8] Overfull \hbox (157.29202pt too wide) in paragraph at lines 255--258 [][] \T1/phv/m/n/10 const dou-ble \T1/phv/b/n/10 logpi \T1/phv/m/n/10 = 1.[]144 7298858494001741434273513530587116472948129153115715136230714721377698848260797 83623270275489708 [9] [10]) [11] [12] Chapter 5. (./class_iso_spec_1_1_allocator.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. ) (./class_iso_spec_1_1_conf_equal.tex) (./class_iso_spec_1_1_conf_order.tex [13]) (./class_iso_spec_1_1_conf_order_marginal.tex) (./class_iso_spec_1_1_conf_order_marginal_descending.tex) (./class_iso_spec_1_1_dirty_allocator.tex [14]) (./class_iso_spec_1_1_fixed_envelope.tex [15] [16]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf> [17] [18] [19] [20] [21]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_spec_1_1_iso_ge nerator.pdf> [22] Underfull \hbox (badness 10000) detected at line 76 [][][] Underfull \hbox (badness 10000) detected at line 93 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 98--99 []\T1/phv/m/n/10 Reimplemented in [], [], and []. [23] Underfull \hbox (badness 10000) detected at line 114 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 119--120 []\T1/phv/m/n/10 Reimplemented in [], [], and []. Underfull \hbox (badness 10000) detected at line 135 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 140--141 []\T1/phv/m/n/10 Reimplemented in [], [], and []. ) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso_lay ered_generator.pdf> [24] [25] Underfull \hbox (badness 10000) detected at line 68 [][][] Underfull \hbox (badness 10000) in paragraph at lines 83--84 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 89 [][][] Underfull \hbox (badness 10000) in paragraph at lines 104--105 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 110 [][][] Underfull \hbox (badness 10000) in paragraph at lines 125--126 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], [26] Underfull \hbox (badness 10000) detected at line 131 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [27] Underfull \hbox (badness 10000) detected at line 60 [][][] [28]) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_ iso_stochastic_generator.pdf> Underfull \hbox (badness 10000) in paragraph at lines 44--45 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) [29] Underfull \hbox (badness 10000) detected at line 50 [][][] Underfull \hbox (badness 10000) detected at line 71 [][][] Underfull \hbox (badness 10000) in paragraph at lines 86--87 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 92 [][][] Underfull \hbox (badness 10000) in paragraph at lines 107--108 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 113 [][][] [30]) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_i so_threshold_generator.pdf> [31] Overfull \hbox (18.89209pt too wide) in paragraph at lines 94--95 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Thresho ld[]Generator[]::advance[]To[]Next[]Configuration ( ) [inline], [32] Underfull \hbox (badness 10000) detected at line 100 [][][] Underfull \hbox (badness 10000) in paragraph at lines 125--126 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 131 [][][] Underfull \hbox (badness 10000) in paragraph at lines 146--147 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 152 [][][] Underfull \hbox (badness 10000) in paragraph at lines 167--168 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 173 [][][] [33]) (./class_iso_spec_1_1_key_hasher.tex) (./class_iso_spec_1_1_layered_marginal.tex <./class_iso_spec_1_1_layered_margin al.pdf> [34] [35] Underfull \hbox (badness 10000) detected at line 109 [][][] [36] Underfull \hbox (badness 10000) detected at line 126 [][][] ) (./class_iso_spec_1_1_marginal.tex <./class_iso_spec_1_1_marginal.pdf> [37] [38] Underfull \hbox (badness 10000) detected at line 128 [][][] Underfull \hbox (badness 10000) detected at line 148 [][][] Underfull \hbox (badness 10000) detected at line 165 [][][] [39] Underfull \hbox (badness 10000) detected at line 182 [][][] Underfull \hbox (badness 10000) detected at line 199 [][][] Underfull \hbox (badness 10000) detected at line 216 [][][] [40] Underfull \hbox (badness 10000) detected at line 233 [][][] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 281 [][][] [41] Underfull \hbox (badness 10000) detected at line 298 [][][] Underfull \hbox (badness 10000) detected at line 320 [][][] [42] [43]) (./class_iso_spec_1_1_marginal_trek.tex <./class_iso_spec_1_1_margin al_trek.pdf> [44] Underfull \hbox (badness 10000) detected at line 87 [][][] [45] Underfull \hbox (badness 10000) detected at line 111 [][][] ) (./class_iso_spec_1_1_order_marginals_by_size_decresing.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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[46]) (./class_iso_spec_1_1_precalculated_marginal.tex [47] <./class_iso_spec_1 _1_precalculated_marginal.pdf> [48] Underfull \hbox (badness 10000) detected at line 108 [][][] [49] Underfull \hbox (badness 10000) detected at line 133 [][][] Underfull \hbox (badness 10000) detected at line 155 [][][] Underfull \hbox (badness 10000) detected at line 172 [][][] [50] Underfull \hbox (badness 10000) detected at line 194 [][][] Underfull \hbox (badness 10000) detected at line 211 [][][] Underfull \hbox (badness 10000) detected at line 228 [][][] [51] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 267 [][][] Underfull \hbox (badness 10000) detected at line 284 [][][] ) (./struct_iso_spec_1_1_prob_and_conf_ptr.tex) (./class_iso_spec_1_1_reverse_order.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [52]) (./class_iso_spec_1_1_s_summator.tex) (./class_iso_spec_1_1_summator.tex [53]) (./class_iso_spec_1_1_table_order.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. ) (./class_iso_spec_1_1_t_summator.tex) (./classunsafe__pod__vector.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [54] [55]) [56] (./refman.ind [57] [58] [59]) (./refman.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (65 pages, 318520 bytes). 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Transcript written in refman.ilg. pdflatex refman This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2021-11-15> patch level 1 L3 programming layer <2022-01-21> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array-2016-10-06.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty Package fixltx2e Warning: fixltx2e is not required with releases after 2015 (fixltx2e) All fixes are now in the LaTeX kernel. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [7] [8] Overfull \hbox (157.29202pt too wide) in paragraph at lines 255--258 [][] \T1/phv/m/n/10 const dou-ble \T1/phv/b/n/10 logpi \T1/phv/m/n/10 = 1.[]144 7298858494001741434273513530587116472948129153115715136230714721377698848260797 83623270275489708 [9] [10]) [11] [12] Chapter 5. (./class_iso_spec_1_1_allocator.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. ) (./class_iso_spec_1_1_conf_equal.tex) (./class_iso_spec_1_1_conf_order.tex [13]) (./class_iso_spec_1_1_conf_order_marginal.tex) (./class_iso_spec_1_1_conf_order_marginal_descending.tex) (./class_iso_spec_1_1_dirty_allocator.tex [14]) (./class_iso_spec_1_1_fixed_envelope.tex [15] [16]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf> [17] [18] [19] [20] [21]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_spec_1_1_iso_ge nerator.pdf> [22] Underfull \hbox (badness 10000) detected at line 76 [][][] Underfull \hbox (badness 10000) detected at line 93 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 98--99 []\T1/phv/m/n/10 Reimplemented in [], [], and []. [23] Underfull \hbox (badness 10000) detected at line 114 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 119--120 []\T1/phv/m/n/10 Reimplemented in [], [], and []. Underfull \hbox (badness 10000) detected at line 135 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 140--141 []\T1/phv/m/n/10 Reimplemented in [], [], and []. ) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso_lay ered_generator.pdf> [24] [25] Underfull \hbox (badness 10000) detected at line 68 [][][] Underfull \hbox (badness 10000) in paragraph at lines 83--84 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 89 [][][] Underfull \hbox (badness 10000) in paragraph at lines 104--105 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 110 [][][] Underfull \hbox (badness 10000) in paragraph at lines 125--126 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], [26] Underfull \hbox (badness 10000) detected at line 131 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [27] Underfull \hbox (badness 10000) detected at line 60 [][][] [28]) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_ iso_stochastic_generator.pdf> Underfull \hbox (badness 10000) in paragraph at lines 44--45 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) [29] Underfull \hbox (badness 10000) detected at line 50 [][][] Underfull \hbox (badness 10000) detected at line 71 [][][] Underfull \hbox (badness 10000) in paragraph at lines 86--87 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 92 [][][] Underfull \hbox (badness 10000) in paragraph at lines 107--108 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 113 [][][] [30]) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_i so_threshold_generator.pdf> [31] Overfull \hbox (18.89209pt too wide) in paragraph at lines 94--95 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Thresho ld[]Generator[]::advance[]To[]Next[]Configuration ( ) [inline], [32] Underfull \hbox (badness 10000) detected at line 100 [][][] Underfull \hbox (badness 10000) in paragraph at lines 125--126 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 131 [][][] Underfull \hbox (badness 10000) in paragraph at lines 146--147 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 152 [][][] Underfull \hbox (badness 10000) in paragraph at lines 167--168 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 173 [][][] [33]) (./class_iso_spec_1_1_key_hasher.tex) (./class_iso_spec_1_1_layered_marginal.tex <./class_iso_spec_1_1_layered_margin al.pdf> [34] [35] Underfull \hbox (badness 10000) detected at line 109 [][][] [36] Underfull \hbox (badness 10000) detected at line 126 [][][] ) (./class_iso_spec_1_1_marginal.tex <./class_iso_spec_1_1_marginal.pdf> [37] [38] Underfull \hbox (badness 10000) detected at line 128 [][][] Underfull \hbox (badness 10000) detected at line 148 [][][] Underfull \hbox (badness 10000) detected at line 165 [][][] [39] Underfull \hbox (badness 10000) detected at line 182 [][][] Underfull \hbox (badness 10000) detected at line 199 [][][] Underfull \hbox (badness 10000) detected at line 216 [][][] [40] Underfull \hbox (badness 10000) detected at line 233 [][][] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 281 [][][] [41] Underfull \hbox (badness 10000) detected at line 298 [][][] Underfull \hbox (badness 10000) detected at line 320 [][][] [42] [43]) (./class_iso_spec_1_1_marginal_trek.tex <./class_iso_spec_1_1_margin al_trek.pdf> [44] Underfull \hbox (badness 10000) detected at line 87 [][][] [45] Underfull \hbox (badness 10000) detected at line 111 [][][] ) (./class_iso_spec_1_1_order_marginals_by_size_decresing.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. ) (./classpod__vector.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [46]) (./class_iso_spec_1_1_precalculated_marginal.tex [47] <./class_iso_spec_1 _1_precalculated_marginal.pdf> [48] Underfull \hbox (badness 10000) detected at line 108 [][][] [49] Underfull \hbox (badness 10000) detected at line 133 [][][] Underfull \hbox (badness 10000) detected at line 155 [][][] Underfull \hbox (badness 10000) detected at line 172 [][][] [50] Underfull \hbox (badness 10000) detected at line 194 [][][] Underfull \hbox (badness 10000) detected at line 211 [][][] Underfull \hbox (badness 10000) detected at line 228 [][][] [51] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 267 [][][] Underfull \hbox (badness 10000) detected at line 284 [][][] ) (./struct_iso_spec_1_1_prob_and_conf_ptr.tex) (./class_iso_spec_1_1_reverse_order.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [52]) (./class_iso_spec_1_1_s_summator.tex) (./class_iso_spec_1_1_summator.tex [53]) (./class_iso_spec_1_1_table_order.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. ) (./class_iso_spec_1_1_t_summator.tex) (./classunsafe__pod__vector.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [54] [55]) [56] (./refman.ind [57] [58] [59]) (./refman.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (65 pages, 318520 bytes). Transcript written on refman.log. make[6]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/man/latex' make[5]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' [100%] Built target pdf_doc make[4]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' # sed-based replacement of the cloudflare URL with the MathJax.js file from the # libjs-mathjax package sh debian/replace-mathjax-cloudflare-url-local-file.sh # Recreate the symlink that was created by setup.py # and that we had to remove at the override_dh_clean target. ln -sf IsoSpec++ IsoSpecPy/IsoSpec++ make[1]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh binary-arch --with python3 dh_testroot -a dh_prep -a rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2.substvars debian/python3-isospec.substvars rm -fr -- debian/.debhelper/generated/libisospec\+\+-dev/ debian/libisospec\+\+-dev/ debian/tmp/ debian/.debhelper/generated/libisospec\+\+2/ debian/libisospec\+\+2/ debian/.debhelper/generated/python3-isospec/ debian/python3-isospec/ rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+2.debhelper.log debian/python3-isospec.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh_auto_configure -O--buildsystem=pybuild --sourcedirectory=IsoSpecPy pybuild --configure -i python{version} -p 3.10 --dir IsoSpecPy I: pybuild base:237: python3.10 setup.py config running config dh_auto_build -O--buildsystem=pybuild --sourcedirectory=IsoSpecPy pybuild --build -i python{version} -p 3.10 --dir IsoSpecPy I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py running build_ext dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/isospec-wY2c7y/isospec-2.1.3 -- CMAKE_BINARY_DIR: /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [No such file or directory]. gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [No such file or directory]. -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done -- Generating done -- Build files have been written to: /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/isospec-wY2c7y/isospec-2.1.3 -B/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/CMakeFiles /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend make[4]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-wY2c7y/isospec-2.1.3 /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++ /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++ /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-wY2c7y/isospec-2.1.3 /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++ /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++ /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake --color= Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d" is newer than depends file "/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/compiler_depend.internal". Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d" is newer than depends file "/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IsoSpec++-shared make[4]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build Consolidate compiler generated dependencies of target IsoSpec++-static make[4]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build make[4]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build'. make[4]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build'. make[4]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' [ 50%] Built target IsoSpec++-shared [100%] Built target IsoSpec++-static make[3]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/isospec-wY2c7y/isospec-2.1.3 -- CMAKE_BINARY_DIR: /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [No such file or directory]. gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [No such file or directory]. -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done -- Generating done -- Build files have been written to: /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu # Generate the dev-doc in the man/hml and man/latex directories #doxygen man/doxyfile dh_auto_build -O--buildsyste=cmake -- html_doc cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" html_doc VERBOSE=1 make[2]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/isospec-wY2c7y/isospec-2.1.3 -B/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 html_doc make[3]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/isospec-wY2c7y/isospec-2.1.3 -B/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/html_doc.dir/all make[4]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/depend make[5]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-wY2c7y/isospec-2.1.3 /build/isospec-wY2c7y/isospec-2.1.3/man /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/man /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/man/CMakeFiles/html_doc.dir/DependInfo.cmake --color= make[5]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/build make[5]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' [100%] Doxygen-based developer html documentation generation cd /build/isospec-wY2c7y/isospec-2.1.3/man && doxygen doxyfile warning: Tag 'TCL_SUBST' at line 248 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: ignoring unsupported tag 'CLANG_COMPILATION_DATABASE_PATH' at line 1102, file doxyfile warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1120 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2193 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2215 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++ Reading and parsing tag files Parsing files Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/cwrapper.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/cwrapper.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/cwrapper.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/cwrapper.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/mman.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/mman.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/mman.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/mman.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.cpp... Parsing file /buil/build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h:33: warning: Compound IsoSpec::Allocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:53: warning: Compound IsoSpec::ConfEqual is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:75: warning: Compound IsoSpec::ConfOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:87: warning: Compound IsoSpec::ConfOrderMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:102: warning: Compound IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:25: warning: Compound IsoSpec::DirtyAllocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:35: warning: Compound IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:439: warning: Compound IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:542: warning: Compound IsoSpec::IsoStochasticGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:28: warning: Compound IsoSpec::KeyHasher is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:141: warning: Compound IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h:24: warning: Compound IsoSpec::ProbAndConfPtr is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:117: warning: Compound IsoSpec::ReverseOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:26: warning: Compound IsoSpec::SSummator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:76: warning: Compound IsoSpec::Summator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:99: warning: Compound IsoSpec::TSummator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:124: warning: Compound IsoSpec::TableOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:30: warning: Compound pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:379: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command d/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.cpp... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/platform.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/platform.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/platform_incl.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/platform_incl.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h... Preprocessing /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/unity-build.cpp... Parsing file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/unity-build.cpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/cwrapper.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/cwrapper.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp../build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:159: warning: Member iterator (typedef) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:160: warning: Member const_iterator (typedef) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:161: warning: Member value_type (typedef) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:162: warning: Member size_type (typedef) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:163: warning: Member reference (typedef) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:164: warning: Member const_reference (typedef) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:41: warning: Member pod_vector(size_t initial_size=16) (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:53: warning: Member pod_vector(pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:63: warning: Member pod_vector(unsafe_pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:70: warning: Member fast_reserve(size_t n) (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:81: warning: Member reserve(size_t n) (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:87: warning: Member nocheck_push_back(const T &val) noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:94: warning: Member push_back(const T &val) (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:102: warning: Member operator[](size_t n) noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:108: warning: Member operator[](size_t n) const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:114: warning: Member size() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:119: warning: Member capacity() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:124: warning: Member data() noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:129: warning: Member data() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:134: warning: Member empty() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:139: warning: Member back() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:145: warning: Member pop_back() noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:152: warning: Member swap(pod_vector< T > &other) noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:166: warning: Member begin() noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:167: warning: Member begin() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:168: warning: Member cbegin() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:169: warning: Member end() noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:170: warning: Member end() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:171: warning: Member cend() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:173: warning: Member front() const noexcept (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:179: warning: Member clear() (function) of class pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:337: warning: Member iterator (typedef) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:338: warning: Member const_iterator (typedef) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:339: warning: Member value_type (typedef) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:340: warning: Member size_type (typedef) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:341: warning: Member reference (typedef) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:342: warning: Member const_reference (typedef) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:203: warning: Member init() (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:205: warning: Member init(size_t initial_size) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:217: warning: Member unsafe_pod_vector(unsafe_pod_vector< T > &&other) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:224: warning: Member free() (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:226: warning: Member fast_reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:237: warning: Member reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:243: warning: Member resize(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:257: warning: Member resize_and_wipe(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:265: warning: Member nocheck_push_back(const T &val) noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:272: warning: Member push_back(const T &val) (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:280: warning: Member operator[](size_t n) noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:286: warning: Member operator[](size_t n) const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:292: warning: Member size() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:297: warning: Member capacity() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:302: warning: Member data() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:307: warning: Member data() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:312: warning: Member empty() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:317: warning: Member back() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:323: warning: Member pop_back() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:330: warning: Member swap(pod_vector< T > &other) noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:344: warning: Member begin() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:345: warning: Member begin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:346: warning: Member cbegin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:347: warning: Member end() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:348: warning: Member end() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:349: warning: Member cend() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:351: warning: Member front() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h:357: warning: Member clear() (function) of class unsafe_pod_vector is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h:27: warning: Member RealType (typedef) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h:28: warning: Member IntType (typedef) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h:22: warning: Member Conf (typedef) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h:26: warning: Member copyConf(const T *source, T *destination, int dim) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h:77: warning: Member btrd(IntType _t, RealType p, IntType m, std::mt19937 &urng=random_gen) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h:160: warning: Member invert(IntType t, RealType p, std::mt19937 &urng=random_gen) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/btrd.h:189: warning: Member boost_binomial_distribution_variate(IntType t_arg, RealType p_arg, std::mt19937 &urng=random_gen) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.h:33: warning: Member parse_fasta(const char *fasta, int atomCounts[6]) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp:134: warning: Member reorder_array(T *arr, size_t *order, size_t size, bool can_destroy=false) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:23: warning: Member release_g_lfact_table() (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:32: warning: Member alloc_lfact_table() (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:47: warning: Member RationalApproximation(double t) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:57: warning: Member NormalCDFInverse(double p) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:65: warning: Member NormalCDFInverse(double p, double mean, double stdev) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:70: warning: Member NormalCDF(double x, double mean, double stdev) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:95: warning: Member NormalPDF(double x, double mean, double stdev) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:104: warning: Member LowerIncompleteGamma2(int a, double x) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:131: warning: Member InverseLowerIncompleteGamma2(int a, double x) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:150: warning: Member random_gen(random_dev()) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:151: warning: Member stdunif(0.0, 1.0) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:153: warning: Member rdvariate_binom(size_t tries, double succ_prob, std::mt19937 &rgen) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h:68: warning: Member InverseChiSquareCDF2(int k, double x) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h:76: warning: Member rdvariate_beta_1_b(double b, std::mt19937 &rgen=random_gen) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.cpp:355: warning: Member parse_formula(const char *formula, std::vector< double > &isotope_masses, std::vector< double > &isotope_probabilities, int **isotopeNumbers, int **atomCounts, unsigned int *confSize, bool use_nominal_masses) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp:149: warning: Member get_loggamma_nominator(int x) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp:156: warning: Member verify_atom_cnt(int atomCnt) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.cpp:28: warning: Member quickselect(void **array, int n, int start, int end) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:29: warning: Member combinedSum(const int *conf, const std::vector< double > **valuesContainer, int dimNumber) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:38: warning: Member combinedSum(const int *conf, const pod_vector< double > **valuesContainer, int dimNumber) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:47: warning: Member getConf(void *conf) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:54: warning: Member getLProb(void *conf) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:61: warning: Member unnormalized_logProb(const int *conf, const double *logProbs, int dim) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:71: warning: Member calc_mass(const int *conf, const double *masses, int dim) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:85: warning: Member printArray(const T *array, int size, const char *prefix="") (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:94: warning: Member printVector(const std::vector< T > &vec) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:99: warning: Member printOffsets(const T **array, int size, const T *offset, const char *prefix="") (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:108: warning: Member printNestedArray(const T **array, const int *shape, int size) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:133: warning: Member dealloc_table(T *tbl, int dim) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:142: warning: Member realloc_append(T **array, T what, size_t old_array_size) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:151: warning: Member get_order(T *order_array, size_t N) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:162: warning: Member get_inverse_order(T *order_array, size_t N) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h:173: warning: Member impose_order(size_t *O, size_t N, TA *A, TB *B) (function) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:26: warning: Member isospec_number_of_isotopic_entries (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:28: warning: Member elem_table_ID[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:325: warning: Member elem_table_atomicNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:621: warning: Member elem_table_mass[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:917: warning: Member elem_table_massNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:1213: warning: Member elem_table_extraNeutrons[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:1509: warning: Member elem_table_element[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:1805: warning: Member elem_table_symbol[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:2101: warning: Member elem_table_Radioactive[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:2397: warning: Member elem_table_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/element_tables.cpp:2693: warning: Member elem_table_log_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp:25: warning: Member aa_isotope_numbers[6] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp:27: warning: Member aa_elem_masses[19] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp:37: warning: Member aa_elem_nominal_masses[19] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp:47: warning: Member aa_elem_probabilities[19] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fasta.cpp:57: warning: Member aa_symbol_to_elem_counts[256 *6] (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:44: warning: Member g_lfact_table (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:102: warning: Member sqrt_pi (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.cpp:149: warning: Member random_dev (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h:53: warning: Member pi (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h:54: warning: Member logpi (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h:73: warning: Member random_gen (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h:74: warning: Member stdunif (variable) of IsoSpec is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp:50: warning: The following parameters of IsoSpec::writeInitialConfiguration(const int atomCnt, const int isotopeNo, const double *lprobs, int *res) are not documented: parameter 'isotopeNo' parameter 'lprobs' parameter 'res' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h:42: warning: Member Allocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::Allocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h:48: warning: Member shiftTables() (function) of class IsoSpec::Allocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h:50: warning: Member newConf() (function) of class IsoSpec::Allocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/allocator.h:60: warning: Member makeCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h:30: warning: Member ProbAndConfPtr(double p, Conf c) (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h:32: warning: Member operator<(const ProbAndConfPtr &other) const (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h:27: warning: Member first (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/conf.h:28: warning: Member second (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:36: warning: Member DirtyAllocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:42: warning: Member shiftTables() (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:44: warning: Member newConf() (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:65: warning: Member FixedEnvelope(const FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:66: warning: Member FixedEnvelope(FixedEnvelope &&other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:68: warning: Member FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:77: warning: Member operator+(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:78: warning: Member operator*(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:80: warning: Member confs_no() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:81: warning: Member getAllDim() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:83: warning: Member masses() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:84: warning: Member probs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:85: warning: Member confs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:87: warning: Member release_masses() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:88: warning: Member release_probs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:89: warning: Member release_confs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:92: warning: Member mass(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:93: warning: Member prob(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:94: warning: Member conf(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:96: warning: Member sort_by_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:97: warning: Member sort_by_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:99: warning: Member get_total_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:100: warning: Member scale(double factor) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:101: warning: Member normalize() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:103: warning: Member empiric_average_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:104: warning: Member empiric_variance() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:105: warning: Member empiric_stddev() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:107: warning: Member WassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:108: warning: Member OrientedWassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:114: warning: Member bin(double bin_width=1.0, double middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:159: warning: Member threshold_init(Iso &&iso, double threshold, bool absolute) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:161: warning: Member addConfILG(const GenType &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:170: warning: Member total_prob_init(Iso &&iso, double target_prob, bool trim) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:205: warning: Member stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:110: warning: Member LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:111: warning: Member LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:172: warning: Member FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:183: warning: Member FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:188: warning: Member FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:200: warning: Member FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:207: warning: Member FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:219: warning: Member FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:224: warning: Member Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:225: warning: Member Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:121: warning: Member store_conf(const T &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:128: warning: Member store_conf(double _mass, double _prob) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:141: warning: Member swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:155: warning: Member reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:156: warning: Member slow_reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:37: warning: Member _masses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:38: warning: Member _probs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:39: warning: Member _confs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:40: warning: Member _confs_no (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:41: warning: Member allDim (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:42: warning: Member sorted_by_mass (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:43: warning: Member sorted_by_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:44: warning: Member total_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:45: warning: Member current_size (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:46: warning: Member tmasses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:47: warning: Member tprobs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:48: warning: Member tconfs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:49: warning: Member allDimSizeofInt (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:110: warning: Found unknown command '\use_nominal_masses' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:111: warning: Found unknown command '\add_water' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:113: warning: The following parameters of IsoSpec::Iso::FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true) are not documented: parameter 'use_nominal_masses' parameter 'add_water' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:339: warning: argument 'tabSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:339: warning: argument 'hashSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:346: warning: The following parameters of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) are not documented: parameter '_tabSize' parameter '_hashSize' parameter 'reorder_marginals' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:483: warning: Member get_currentLThreshold() const (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:485: warning: Member IsoLayeredGenerator(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:499: warning: Member advanceToNextConfigurationWithinLayer() (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:534: warning: Member nextLayer(double offset) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:553: warning: Member IsoStochasticGenerator(Iso &&iso, size_t no_molecules, double precision=0.9999, double beta_bias=5.0) (function) of class IsoSpec::IsoStochasticGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:555: warning: Member count() const (function) of class IsoSpec::IsoStochasticGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:226: warning: Member conf_lprobs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:227: warning: Member conf_masses() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:228: warning: Member confs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:195: warning: The following parameter of IsoSpec::MarginalTrek::MarginalTrek(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:247: warning: Member configurations (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:248: warning: Member confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:249: warning: Member no_confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:250: warning: Member masses (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:251: warning: Member lProbs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:252: warning: Member probs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:253: warning: Member allocator (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:257: warning: argument 'Marginal' of command @param is not found in the argument list of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:263: warning: The following parameters of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) are not documented: parameter 'm' parameter 'tabSize' parameter 'hashSize' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:379: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:364: warning: The following parameter of IsoSpec::LayeredMarginal::LayeredMarginal(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h:374: warning: The following parameter of IsoSpec::LayeredMarginal::extend(double new_threshold, bool do_sort=true) is not documented: parameter 'do_sort' /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:34: warning: Member KeyHasher(int dim) (function) of class IsoSpec::KeyHasher is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:36: warning: Member operator()(const int *conf) const noexcept (function) of class IsoSpec::KeyHasher is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:59: warning: Member ConfEqual(int dim) (function) of class IsoSpec::ConfEqual is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:61: warning: Member operator()(const int *conf1, const int *conf2) const (function) of class IsoSpec::ConfEqual is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:79: warning: Member operator()(void *conf1, void *conf2) const (function) of class IsoSpec::ConfOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:93: warning: Member ConfOrderMarginal(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:95: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:108: warning: Member ConfOrderMarginalDescending(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:110: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:121: warning: Member operator()(const T a, const T b) const (function) of class IsoSpec::ReverseOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:128: warning: Member TableOrder(const T *_tbl) (function) of class IsoSpec::TableOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:129: warning: Member operator()(unsigned int i, unsigned int j) (function) of class IsoSpec::TableOrder is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:145: warning: Member OrderMarginalsBySizeDecresing(T const *const *const MT_) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h:146: warning: Member operator()(int m1, int m2) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:35: warning: Member SSummator(const SSummator &other) (function) of class IsoSpec::SSummator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:39: warning: Member add(double x) (function) of class IsoSpec::SSummator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:61: warning: Member get() (function) of class IsoSpec::SSummator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:85: warning: Member add(double what) (function) of class IsoSpec::Summator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:93: warning: Member get() (function) of class IsoSpec::Summator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:107: warning: Member add(double what) (function) of class IsoSpec::TSummator is not documented. /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h:111: warning: Member get() (function) of class IsoSpec::TSummator is not documented. . Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoMath.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/isoSpec++.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/marginalTrek++.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/misc.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/mman.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/mman.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.cpp... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/operators.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/platform.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/platform_incl.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/pod_vector.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/summator.h... Generating code for file /build/isospec-wY2c7y/isospec-2.1.3/IsoSpec++/unity-build.cpp... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound pod_vector... Generating docs for compound unsafe_pod_vector... Generating namespace index... Generating docs for namespace IsoSpec Generating docs for compound IsoSpec::Allocator... Generating docs for compound IsoSpec::ProbAndConfPtr... Generating docs for compound IsoSpec::DirtyAllocator... Generating docs for compound IsoSpec::FixedEnvelope... Generating docs for compound IsoSpec::Iso... Generating docs for compound IsoSpec::IsoGenerator... Generating docs for compound IsoSpec::IsoOrderedGenerator... Generating docs for compound IsoSpec::IsoThresholdGenerator... Generating docs for compound IsoSpec::IsoLayeredGenerator... Generating docs for compound IsoSpec::IsoStochasticGenerator... Generating docs for compound IsoSpec::Marginal... Generating docs for compound IsoSpec::MarginalTrek... Generating docs for compound IsoSpec::PrecalculatedMarginal... Generating docs for compound IsoSpec::LayeredMarginal... Generating docs for compound IsoSpec::KeyHasher... Generating docs for compound IsoSpec::ConfEqual... Generating docs for compound IsoSpec::ConfOrder... Generating docs for compound IsoSpec::ConfOrderMarginal... Generating docs for compound IsoSpec::ConfOrderMarginalDescending... Generating docs for compound IsoSpec::ReverseOrder... Generating docs for compound IsoSpec::TableOrder... Generating docs for compound IsoSpec::OrderMarginalsBySizeDecresing... Generating docs for compound IsoSpec::SSummator... Generating docs for compound IsoSpec::Summator... Generating docs for compound IsoSpec::TSummator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... lookup cache used 1142/65536 hits=7442 misses=1222 finished... make[5]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' [100%] Built target html_doc make[4]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' dh_auto_build -O--buildsyste=cmake -- pdf_doc cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" pdf_doc VERBOSE=1 make[2]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/isospec-wY2c7y/isospec-2.1.3 -B/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 pdf_doc make[3]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/isospec-wY2c7y/isospec-2.1.3 -B/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/pdf_doc.dir/all make[4]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make -f man/CMakeFiles/pdf_doc.dir/build.make man/CMakeFiles/pdf_doc.dir/depend make[5]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' cd /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-wY2c7y/isospec-2.1.3 /build/isospec-wY2c7y/isospec-2.1.3/man /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/man /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/man/CMakeFiles/pdf_doc.dir/DependInfo.cmake --color= make[5]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make -f man/CMakeFiles/pdf_doc.dir/build.make man/CMakeFiles/pdf_doc.dir/build make[5]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' [100%] Doxygen-based developer pdf documentation generation cd /build/isospec-wY2c7y/isospec-2.1.3/man/latex && make make[6]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/man/latex' make[6]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -f *.ps *.dvi *.aux *.toc *.idx *.ind *.ilg *.log *.out *.brf *.blg *.bbl refman.pdf pdflatex refman This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2021-11-15> patch level 1 L3 programming layer <2022-01-21> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array-2016-10-06.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty Package fixltx2e Warning: fixltx2e is not required with releases after 2015 (fixltx2e) All fixes are now in the LaTeX kernel. 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Package longtable Warning: Column widths have changed (longtable) in table 5.3 on input line 187. [20] [21]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_spec_1_1_iso_ge nerator.pdf> [22] Underfull \hbox (badness 10000) detected at line 76 [][][] Underfull \hbox (badness 10000) detected at line 93 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 98--99 []\T1/phv/m/n/10 Reimplemented in [], [], and []. [23] Underfull \hbox (badness 10000) detected at line 114 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 119--120 []\T1/phv/m/n/10 Reimplemented in [], [], and []. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [7] [8] Overfull \hbox (157.29202pt too wide) in paragraph at lines 255--258 [][] \T1/phv/m/n/10 const dou-ble \T1/phv/b/n/10 logpi \T1/phv/m/n/10 = 1.[]144 7298858494001741434273513530587116472948129153115715136230714721377698848260797 83623270275489708 [9] [10]) [11] [12] Chapter 5. (./class_iso_spec_1_1_allocator.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [7] [8] Overfull \hbox (157.29202pt too wide) in paragraph at lines 255--258 [][] \T1/phv/m/n/10 const dou-ble \T1/phv/b/n/10 logpi \T1/phv/m/n/10 = 1.[]144 7298858494001741434273513530587116472948129153115715136230714721377698848260797 83623270275489708 [9] [10]) [11] [12] Chapter 5. (./class_iso_spec_1_1_allocator.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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Underfull \hbox (badness 10000) detected at line 135 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 140--141 []\T1/phv/m/n/10 Reimplemented in [], [], and []. ) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso_lay ered_generator.pdf> [24] [25] Underfull \hbox (badness 10000) detected at line 68 [][][] Underfull \hbox (badness 10000) in paragraph at lines 83--84 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 89 [][][] Underfull \hbox (badness 10000) in paragraph at lines 104--105 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 110 [][][] Underfull \hbox (badness 10000) in paragraph at lines 125--126 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], [26] Underfull \hbox (badness 10000) detected at line 131 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [27] Underfull \hbox (badness 10000) detected at line 60 [][][] [28]) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_ iso_stochastic_generator.pdf> Underfull \hbox (badness 10000) in paragraph at lines 44--45 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) [29] Underfull \hbox (badness 10000) detected at line 50 [][][] Underfull \hbox (badness 10000) detected at line 71 [][][] Underfull \hbox (badness 10000) in paragraph at lines 86--87 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 92 [][][] Underfull \hbox (badness 10000) in paragraph at lines 107--108 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 113 [][][] [30]) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_i so_threshold_generator.pdf> [31] Overfull \hbox (18.89209pt too wide) in paragraph at lines 94--95 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Thresho ld[]Generator[]::advance[]To[]Next[]Configuration ( ) [inline], [32] Underfull \hbox (badness 10000) detected at line 100 [][][] Underfull \hbox (badness 10000) in paragraph at lines 125--126 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 131 [][][] Underfull \hbox (badness 10000) in paragraph at lines 146--147 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 152 [][][] Underfull \hbox (badness 10000) in paragraph at lines 167--168 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 173 [][][] [33]) (./class_iso_spec_1_1_key_hasher.tex) (./class_iso_spec_1_1_layered_marginal.tex <./class_iso_spec_1_1_layered_margin al.pdf> [34] [35] Underfull \hbox (badness 10000) detected at line 109 [][][] [36] Underfull \hbox (badness 10000) detected at line 126 [][][] ) (./class_iso_spec_1_1_marginal.tex <./class_iso_spec_1_1_marginal.pdf> [37] [38] Underfull \hbox (badness 10000) detected at line 128 [][][] Underfull \hbox (badness 10000) detected at line 148 [][][] Underfull \hbox (badness 10000) detected at line 165 [][][] [39] Underfull \hbox (badness 10000) detected at line 182 [][][] Underfull \hbox (badness 10000) detected at line 199 [][][] Underfull \hbox (badness 10000) detected at line 216 [][][] [40] Underfull \hbox (badness 10000) detected at line 233 [][][] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 281 [][][] [41] Underfull \hbox (badness 10000) detected at line 298 [][][] Underfull \hbox (badness 10000) detected at line 320 [][][] [42] [43]) (./class_iso_spec_1_1_marginal_trek.tex <./class_iso_spec_1_1_margin al_trek.pdf> [44] Underfull \hbox (badness 10000) detected at line 87 [][][] [45] Underfull \hbox (badness 10000) detected at line 111 [][][] ) (./class_iso_spec_1_1_order_marginals_by_size_decresing.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. ) (./classpod__vector.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [46]) (./class_iso_spec_1_1_precalculated_marginal.tex [47] <./class_iso_spec_1 _1_precalculated_marginal.pdf> [48] Underfull \hbox (badness 10000) detected at line 108 [][][] [49] Underfull \hbox (badness 10000) detected at line 133 [][][] Underfull \hbox (badness 10000) detected at line 155 [][][] Underfull \hbox (badness 10000) detected at line 172 [][][] [50] Underfull \hbox (badness 10000) detected at line 194 [][][] Underfull \hbox (badness 10000) detected at line 211 [][][] Underfull \hbox (badness 10000) detected at line 228 [][][] [51] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 267 [][][] Underfull \hbox (badness 10000) detected at line 284 [][][] ) (./struct_iso_spec_1_1_prob_and_conf_ptr.tex) (./class_iso_spec_1_1_reverse_order.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [52]) (./class_iso_spec_1_1_s_summator.tex) (./class_iso_spec_1_1_summator.tex [53]) (./class_iso_spec_1_1_table_order.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. ) (./class_iso_spec_1_1_t_summator.tex) (./classunsafe__pod__vector.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [54] [55]) [56] (./refman.ind [57] [58] [59]) (./refman.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (65 pages, 318520 bytes). Transcript written on refman.log. make[6]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/man/latex' make[5]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' [100%] Built target pdf_doc make[4]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' # sed-based replacement of the cloudflare URL with the MathJax.js file from the # libjs-mathjax package sh debian/replace-mathjax-cloudflare-url-local-file.sh # Recreate the symlink that was created by setup.py # and that we had to remove at the override_dh_clean target. ln -sf IsoSpec++ IsoSpecPy/IsoSpec++ # Install the Python module dh_auto_install -O--buildsystem=pybuild --sourcedirectory=IsoSpecPy install -d /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp pybuild --install -i python{version} -p 3.10 --dir IsoSpecPy --dest-dir /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext running install_lib creating /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec creating /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr creating /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib creating /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10 creating /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages creating /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy copying /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy/Advanced.py -> /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy copying /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy/Distributions.py -> /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy copying /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy/Formulas.py -> /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy copying /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy/IsoSpecPy.py -> /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy copying /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy/IsoSpecPyOld.py -> /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy copying /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy/PeriodicTbl.py -> /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy copying /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy/__init__.py -> /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy copying /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy/approximations.py -> /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy copying /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy/confs_passthrough.py -> /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy copying /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecPy/isoFFI.py -> /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy copying /build/isospec-wY2c7y/isospec-2.1.3/.pybuild/cpython3_3.10_isospec/build/IsoSpecCppPy.cpython-310-x86_64-linux-gnu.so -> /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages byte-compiling /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy/Advanced.py to Advanced.cpython-310.pyc byte-compiling /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy/Distributions.py to Distributions.cpython-310.pyc byte-compiling /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy/Formulas.py to Formulas.cpython-310.pyc byte-compiling /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy/IsoSpecPy.py to IsoSpecPy.cpython-310.pyc /usr/lib/python3.10/dist-packages/IsoSpecPy/IsoSpecPy.py:55: SyntaxWarning: "is not" with a literal. Did you mean "!="? byte-compiling /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy/IsoSpecPyOld.py to IsoSpecPyOld.cpython-310.pyc byte-compiling /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy/PeriodicTbl.py to PeriodicTbl.cpython-310.pyc byte-compiling /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy/__init__.py to __init__.cpython-310.pyc byte-compiling /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy/approximations.py to approximations.cpython-310.pyc byte-compiling /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy/confs_passthrough.py to confs_passthrough.cpython-310.pyc byte-compiling /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy/isoFFI.py to isoFFI.cpython-310.pyc running install_egg_info running egg_info creating IsoSpecPy.egg-info writing IsoSpecPy.egg-info/PKG-INFO writing dependency_links to IsoSpecPy.egg-info/dependency_links.txt writing requirements to IsoSpecPy.egg-info/requires.txt writing top-level names to IsoSpecPy.egg-info/top_level.txt writing manifest file 'IsoSpecPy.egg-info/SOURCES.txt' reading manifest file 'IsoSpecPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'IsoSpecPy/*.dll' writing manifest file 'IsoSpecPy.egg-info/SOURCES.txt' Copying IsoSpecPy.egg-info to /build/isospec-wY2c7y/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.10/dist-packages/IsoSpecPy-2.1.3.egg-info Skipping SOURCES.txt running install_scripts # Install the C++ library dh_auto_install -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j10 install DESTDIR=/build/isospec-wY2c7y/isospec-2.1.3/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/isospec-wY2c7y/isospec-2.1.3 -B/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec++/FindIsoSpec++.cmake -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec++/IsoSpec++Config.cmake -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libisospec++.pc -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.svg -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.svg -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images/logo2_high.pdf -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images/logo2_long.pdf -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/tabs.css -- Installing: 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/build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_DirtyAllocator.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_FixedEnvelope.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_Iso.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_IsoGenerator.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_KeyHasher.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_LayeredMarginal.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_Marginal.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_MarginalTrek.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_ReverseOrder.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_SSummator.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_Summator.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_TSummator.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_TableOrder.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/pod_vector.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/man/man3/unsafe_pod_vector.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/C++ -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/C++/COMPILING -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/C++/radiolabelling.cpp -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/C++/water.cpp -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/Python -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/Python/custom_elements.py -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/Python/fasta.py -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/Python/radiolabelling.py -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/Python/water.py -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/R -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/R/radiolabelling.R -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/R/water.R -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.so.2.1.3 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.so.2 -- Installing: /build/isospec-wY2c7y/isospec-2.1.3/debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec++.a make[2]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3/obj-x86_64-linux-gnu' # Now remove the links, that we'll provide using d/*.links # So that we can use libIsoSpec++.so.* in d/*.install rm -f debian/tmp/usr/lib/*/libIsoSpec++.so rm -f debian/tmp/usr/lib/*/libIsoSpec++.so.2 make[1]: Leaving directory '/build/isospec-wY2c7y/isospec-2.1.3' dh_install -a install -d debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.a debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/ install -d debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/cmake cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/cmake/isospec\+\+ debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/cmake/ install -d debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libisospec\+\+.pc debian/libisospec\+\+-dev//usr/lib/x86_64-linux-gnu/pkgconfig/ install -d debian/libisospec\+\+-dev/usr/include/IsoSpec\+\+ cp --reflink=auto -a ./IsoSpec\+\+/allocator.h ./IsoSpec\+\+/btrd.h ./IsoSpec\+\+/conf.h ./IsoSpec\+\+/cwrapper.h ./IsoSpec\+\+/dirtyAllocator.h ./IsoSpec\+\+/element_tables.h ./IsoSpec\+\+/fasta.h ./IsoSpec\+\+/fixedEnvelopes.h ./IsoSpec\+\+/isoMath.h ./IsoSpec\+\+/isoSpec\+\+.h ./IsoSpec\+\+/marginalTrek\+\+.h ./IsoSpec\+\+/misc.h ./IsoSpec\+\+/mman.h ./IsoSpec\+\+/operators.h ./IsoSpec\+\+/platform.h ./IsoSpec\+\+/platform_incl.h ./IsoSpec\+\+/pod_vector.h ./IsoSpec\+\+/summator.h debian/libisospec\+\+-dev/usr/include/IsoSpec\+\+/ install -d debian/.debhelper/generated/libisospec\+\+-dev install -d debian/libisospec\+\+2//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.1.3 debian/libisospec\+\+2//usr/lib/x86_64-linux-gnu/ install -d debian/.debhelper/generated/libisospec\+\+2 install -d debian/.debhelper/generated/python3-isospec install -d debian/.debhelper/generated/libisospec\+\+-doc dh_installdocs -a install -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev install -p -m0644 debian/copyright debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/copyright install -d debian/libisospec\+\+2/usr/share/doc/libisospec\+\+2 install -p -m0644 debian/copyright debian/libisospec\+\+2/usr/share/doc/libisospec\+\+2/copyright install -d debian/python3-isospec/usr/share/doc/python3-isospec install -p -m0644 debian/copyright debian/python3-isospec/usr/share/doc/python3-isospec/copyright dh_installchangelogs -a install -p -m0644 ./CHANGELOG debian/python3-isospec/usr/share/doc/python3-isospec/changelog install -p -m0644 ./CHANGELOG debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog install -p -m0644 ./CHANGELOG debian/libisospec\+\+2/usr/share/doc/libisospec\+\+2/changelog dh_installman -a install -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfEqual.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_FixedEnvelope.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Iso.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_KeyHasher.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_LayeredMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_MarginalTrek.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Summator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 install -p -m0644 debian/tmp/usr/share/man/man3/pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 install -p -m0644 debian/tmp/usr/share/man/man3/unsafe_pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 dh_python3 -a D: dh_python3 dh_python3:161: version: 5.20220215 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-a'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': True, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': None} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9,3.10 (default=3.10) D: dh_python3 debhelper:162: skipping package libisospec++-dev (missing ${python3:Depends} in Depends) D: dh_python3 debhelper:162: skipping package libisospec++2 (missing ${python3:Depends} in Depends) D: dh_python3 debhelper:169: source=isospec, binary packages=['python3-isospec'] D: dh_python3 dh_python3:183: processing package python3-isospec... D: dh_python3 fs:52: moving files from debian/python3-isospec/usr/lib/python3.10/dist-packages to debian/python3-isospec/usr/lib/python3/dist-packages/ D: dh_python3 fs:399: package python3-isospec details = {'requires.txt': {'debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy-2.1.3.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.10')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-isospec D: dh_python3 pydist:172: trying to find dependency for cffi (python=None) D: dh_python3 depends:281: D={'python3-cffi-backend-api-min (<= 9729), python3-cffi-backend-api-max (>= 9729)', 'python3:any', 'python3 (>= 3.10~)', 'python3 (<< 3.11)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_perl -a dh_link -a rm -f debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so ln -s libIsoSpec\+\+.so.2.1.3 debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so rm -f debian/libisospec\+\+2/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2 ln -s libIsoSpec\+\+.so.2.1.3 debian/libisospec\+\+2/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2 dh_strip_nondeterminism -a dh_compress -a cd debian/libisospec++-dev cd debian/libisospec++2 cd debian/python3-isospec chmod a-x usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian usr/share/doc/python3-isospec/changelog.Debian.amd64 gzip -9nf usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian usr/share/doc/python3-isospec/changelog.Debian.amd64 chmod a-x usr/share/doc/libisospec\+\+2/changelog usr/share/doc/libisospec\+\+2/changelog.Debian usr/share/doc/libisospec\+\+2/changelog.Debian.amd64 cd '/build/isospec-wY2c7y/isospec-2.1.3' gzip -9nf usr/share/doc/libisospec\+\+2/changelog usr/share/doc/libisospec\+\+2/changelog.Debian usr/share/doc/libisospec\+\+2/changelog.Debian.amd64 cd '/build/isospec-wY2c7y/isospec-2.1.3' chmod a-x usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/doc/libisospec\+\+-dev/changelog.Debian.amd64 usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 gzip -9nf usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/doc/libisospec\+\+-dev/changelog.Debian.amd64 usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 cd '/build/isospec-wY2c7y/isospec-2.1.3' dh_fixperms -a find debian/libisospec++-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libisospec++2 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-isospec -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libisospec\+\+2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-isospec ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+2/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-isospec/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-isospec/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-isospec/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+-dev/usr/share/man debian/libisospec\+\+-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a dh_dwz -a dwz -- debian/libisospec\+\+2/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.1.3 dwz -- debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-310-x86_64-linux-gnu.so dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libisospec\+\+-dev/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.a install -d debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/lib/debug/.build-id/3d objcopy --only-keep-debug --compress-debug-sections debian/libisospec\+\+2/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.1.3 debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/lib/debug/.build-id/3d/69e28160aef89f478f591a77c9826199d66239.debug install -d debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/f9 objcopy --only-keep-debug --compress-debug-sections debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/f9/c8bc2f6ca243e07ad8def914cfdb437eceefb1.debug chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/f9/c8bc2f6ca243e07ad8def914cfdb437eceefb1.debug chown 0:0 -- debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/f9/c8bc2f6ca243e07ad8def914cfdb437eceefb1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/f9/c8bc2f6ca243e07ad8def914cfdb437eceefb1.debug debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-310-x86_64-linux-gnu.so install -d debian/.debhelper/python3-isospec/dbgsym-root/usr/share/doc ln -s python3-isospec debian/.debhelper/python3-isospec/dbgsym-root/usr/share/doc/python3-isospec-dbgsym chmod 0644 -- debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/lib/debug/.build-id/3d/69e28160aef89f478f591a77c9826199d66239.debug chown 0:0 -- debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/lib/debug/.build-id/3d/69e28160aef89f478f591a77c9826199d66239.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libisospec\+\+2/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.1.3 objcopy --add-gnu-debuglink debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/lib/debug/.build-id/3d/69e28160aef89f478f591a77c9826199d66239.debug debian/libisospec\+\+2/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.1.3 install -d debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/share/doc ln -s libisospec\+\+2 debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/share/doc/libisospec\+\+2-dbgsym dh_makeshlibs -a rm -f debian/libisospec\+\+-dev/DEBIAN/shlibs rm -f debian/libisospec\+\+2/DEBIAN/shlibs install -d debian/libisospec\+\+2/DEBIAN echo "libIsoSpec++ 2 libisospec++2 (>= 2.1.3)" >> debian/libisospec\+\+2/DEBIAN/shlibs chmod 0644 -- debian/libisospec\+\+2/DEBIAN/shlibs chown 0:0 -- debian/libisospec\+\+2/DEBIAN/shlibs mv debian/.debhelper/generated/libisospec\+\+2/triggers.new debian/.debhelper/generated/libisospec\+\+2/triggers rm -f debian/python3-isospec/DEBIAN/shlibs dh_shlibdeps -a dpkg-shlibdeps -Tdebian/libisospec\+\+2.substvars debian/libisospec\+\+2/usr/lib/x86_64-linux-gnu/libIsoSpec\+\+.so.2.1.3 install -d debian/python3-isospec/DEBIAN dpkg-shlibdeps -Tdebian/python3-isospec.substvars debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-310-x86_64-linux-gnu.so dh_installdeb -a install -d debian/libisospec\+\+-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libisospec\+\+2/triggers debian/libisospec\+\+2/DEBIAN/triggers printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/postinst cat debian/python3-isospec.postinst.debhelper >> debian/python3-isospec/DEBIAN/postinst chmod 0755 -- debian/python3-isospec/DEBIAN/postinst chown 0:0 -- debian/python3-isospec/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/prerm cat debian/python3-isospec.prerm.debhelper >> debian/python3-isospec/DEBIAN/prerm chmod 0755 -- debian/python3-isospec/DEBIAN/prerm chown 0:0 -- debian/python3-isospec/DEBIAN/prerm dh_gencontrol -a echo misc:Depends= >> debian/libisospec++-dev.substvars echo misc:Pre-Depends= >> debian/libisospec++-dev.substvars dpkg-gencontrol -plibisospec\+\+-dev -ldebian/changelog -Tdebian/libisospec\+\+-dev.substvars -Pdebian/libisospec\+\+-dev echo misc:Depends= >> debian/libisospec++2.substvars echo misc:Pre-Depends= >> debian/libisospec++2.substvars install -d debian/.debhelper/libisospec\+\+2/dbgsym-root/DEBIAN dpkg-gencontrol -plibisospec\+\+2 -ldebian/changelog -Tdebian/libisospec\+\+2.substvars -Pdebian/.debhelper/libisospec\+\+2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libisospec\+\+2-dbgsym "-DDepends=libisospec++2 (= \${binary:Version})" "-DDescription=debug symbols for libisospec++2" -DBuild-Ids=3d69e28160aef89f478f591a77c9826199d66239 -DSection=debug -UReplaces -UBreaks echo misc:Depends= >> debian/python3-isospec.substvars echo misc:Pre-Depends= >> debian/python3-isospec.substvars install -d debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -Pdebian/.debhelper/python3-isospec/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-isospec-dbgsym "-DDepends=python3-isospec (= \${binary:Version})" "-DDescription=debug symbols for python3-isospec" -DBuild-Ids=f9c8bc2f6ca243e07ad8def914cfdb437eceefb1 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/control chown 0:0 -- debian/libisospec\+\+-dev/DEBIAN/control dpkg-gencontrol: warning: package python3-isospec: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-isospec: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/libisospec\+\+2/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libisospec\+\+2/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibisospec\+\+2 -ldebian/changelog -Tdebian/libisospec\+\+2.substvars -Pdebian/libisospec\+\+2 chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -Pdebian/python3-isospec dpkg-gencontrol: warning: package python3-isospec: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-isospec: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-isospec/DEBIAN/control chown 0:0 -- debian/python3-isospec/DEBIAN/control chmod 0644 -- debian/libisospec\+\+2/DEBIAN/control chown 0:0 -- debian/libisospec\+\+2/DEBIAN/control dh_md5sums -a cd debian/libisospec++2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-isospec >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libisospec++-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+2/DEBIAN/md5sums chown 0:0 -- debian/libisospec\+\+2/DEBIAN/md5sums chmod 0644 -- debian/python3-isospec/DEBIAN/md5sums chown 0:0 -- debian/python3-isospec/DEBIAN/md5sums cd debian/.debhelper/libisospec++2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/python3-isospec/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/md5sums chown 0:0 -- debian/libisospec\+\+-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libisospec\+\+2/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libisospec\+\+2/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/libisospec\+\+-dev .. dpkg-deb --build debian/libisospec\+\+2 .. dpkg-deb --build debian/.debhelper/libisospec\+\+2/dbgsym-root .. dpkg-deb --build debian/python3-isospec .. dpkg-deb --build debian/.debhelper/python3-isospec/dbgsym-root .. dpkg-deb: building package 'libisospec++-dev' in '../libisospec++-dev_2.1.3-1+b1_amd64.deb'. dpkg-deb: building package 'libisospec++2-dbgsym' in '../libisospec++2-dbgsym_2.1.3-1+b1_amd64.deb'. dpkg-deb: building package 'libisospec++2' in '../libisospec++2_2.1.3-1+b1_amd64.deb'. dpkg-deb: building package 'python3-isospec-dbgsym' in '../python3-isospec-dbgsym_2.1.3-1+b1_amd64.deb'. dpkg-deb: building package 'python3-isospec' in '../python3-isospec_2.1.3-1+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../isospec_2.1.3-1+b1_amd64.buildinfo dpkg-genchanges --build=any -O../isospec_2.1.3-1+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/isospec-wY2c7y /tmp/isospec-2.1.3-1+b1wwrm8alo I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.PzgiuQg2kD... I: success in 719.6888 seconds md5: libisospec++-dev_2.1.3-1+b1_amd64.deb: OK md5: libisospec++2-dbgsym_2.1.3-1+b1_amd64.deb: OK md5: libisospec++2_2.1.3-1+b1_amd64.deb: OK md5: python3-isospec-dbgsym_2.1.3-1+b1_amd64.deb: OK md5: python3-isospec_2.1.3-1+b1_amd64.deb: OK sha1: libisospec++-dev_2.1.3-1+b1_amd64.deb: OK sha1: libisospec++2-dbgsym_2.1.3-1+b1_amd64.deb: OK sha1: libisospec++2_2.1.3-1+b1_amd64.deb: OK sha1: python3-isospec-dbgsym_2.1.3-1+b1_amd64.deb: OK sha1: python3-isospec_2.1.3-1+b1_amd64.deb: OK sha256: libisospec++-dev_2.1.3-1+b1_amd64.deb: OK sha256: libisospec++2-dbgsym_2.1.3-1+b1_amd64.deb: OK sha256: libisospec++2_2.1.3-1+b1_amd64.deb: OK sha256: python3-isospec-dbgsym_2.1.3-1+b1_amd64.deb: OK sha256: python3-isospec_2.1.3-1+b1_amd64.deb: OK Checksums: OK