Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/i/invesalius/invesalius_3.1.99995-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/invesalius-3.1.99995-1bj1jk9rr/invesalius_3.1.99995-1_amd64.buildinfo Get source package info: invesalius=3.1.99995-1 Source URL: http://snapshot.notset.fr/mr/package/invesalius/3.1.99995-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.4-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.51 bash=5.1-3+b1 binutils=2.37-5 binutils-common=2.37-5 binutils-x86-64-linux-gnu=2.37-5 bsdextrautils=2.37.2-2 bsdutils=1:2.37.2-2 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.3.0-10 cython3=0.29.21-3+b1 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.1 debianutils=5.5-1 dh-autoreconf=20 dh-python=4.20201102+nmu1 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.3.0-10 gcc=4:10.2.1-1 gcc-10=10.3.0-10 gcc-10-base=10.3.0-10 gcc-11-base=11.2.0-7 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-7 libatomic1=11.2.0-7 libattr1=1:2.5.1-1 libaudit-common=1:3.0.5-1 libaudit1=1:3.0.5-1 libbinutils=2.37-5 libblas3=3.10.0-1 libblkid1=2.37.2-2 libbz2-1.0=1.0.8-4 libc-bin=2.32-3 libc-dev-bin=2.32-3 libc6=2.32-3 libc6-dev=2.32-3 libcap-ng0=0.7.9-2.2+b1 libcc1-0=11.2.0-7 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-5 libctf0=2.37-5 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.1 libdpkg-perl=1.20.9 libelf1=0.185-2 libexpat1=2.4.1-2+b1 libexpat1-dev=2.4.1-2+b1 libffi7=3.3-6 libfile-stripnondeterminism-perl=1.12.0-1 libgcc-10-dev=10.3.0-10 libgcc-s1=11.2.0-7 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.21-1 libgdbm6=1.21-1 libgfortran5=11.2.0-7 libgmp10=2:6.2.1+dfsg-2 libgomp1=11.2.0-7 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libicu67=67.1-7 libisl23=0.23-1 libitm1=11.2.0-7 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-sphinxdoc=3.5.4-2 libjs-underscore=1.9.1~dfsg-4 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-1 liblsan0=11.2.0-7 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.37.2-2 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.2+20210905-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-5 libpipeline1=1.5.3-1 libpython3-dev=3.9.2-3 libpython3-stdlib=3.9.2-3 libpython3.9=3.9.7-2 libpython3.9-dev=3.9.7-2 libpython3.9-minimal=3.9.7-2 libpython3.9-stdlib=3.9.7-2 libquadmath0=11.2.0-7 libreadline8=8.1-2 libseccomp2=2.5.2-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.37.2-2 libsqlite3-0=3.36.0-2 libssl1.1=1.1.1l-1 libstdc++-10-dev=10.3.0-10 libstdc++6=11.2.0-7 libsub-override-perl=0.09-2 libsystemd0=247.9-1 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-7 libubsan1=11.2.0-7 libuchardet0=0.0.7-1 libudev1=247.9-1 libunistring2=0.9.10-6 libuuid1=2.37.2-2 libxml2=2.9.12+dfsg-5 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.14.6-2 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 patch=2.7.6-7 perl=5.32.1-5 perl-base=5.32.1-5 perl-modules-5.32=5.32.1-5 po-debconf=1.0.21+nmu1 python3=3.9.2-3 python3-dev=3.9.2-3 python3-distutils=3.9.7-1 python3-lib2to3=3.9.7-1 python3-minimal=3.9.2-3 python3-numpy=1:1.19.5-1 python3-pkg-resources=52.0.0-4 python3.9=3.9.7-2 python3.9-dev=3.9.7-2 python3.9-minimal=3.9.7-2 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=2.96-7 tar=1.34+dfsg-1 tzdata=2021a-1 util-linux=2.37.2-2 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210927T025314Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210927T025314Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211117T152907Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210919T205612Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d invesalius=3.1.99995-1 && mkdir -p /build/invesalius-FfsgIG && dpkg-source --no-check -x /*.dsc /build/invesalius-FfsgIG/invesalius-3.1.99995 && chown -R builduser:builduser /build/invesalius-FfsgIG" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/invesalius-FfsgIG/invesalius-3.1.99995 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1632244267" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/invesalius-FfsgIG /tmp/invesalius-3.1.99995-1bj1jk9rr bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20210919T205612Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.QkgR0pKUZi as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.QkgR0pKUZi Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210919T205612Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210919T205612Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (503 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4665 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-3) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210927T025314Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210927T025314Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211117T152907Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210919T205612Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.QkgR0pKUZi Get:1 http://snapshot.notset.fr/archive/debian/20210927T025314Z bookworm InRelease [128 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211117T152907Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210919T205612Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210927T025314Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210927T025314Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210927T025314Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210927T025314Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210927T025314Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210927T025314Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210927T025314Z bookworm/main Sources [11.6 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210927T025314Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211117T152907Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20211117T152907Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20211117T152907Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211117T152907Z unstable/main amd64 Packages [12.0 MB] Fetched 35.1 MB in 60s (590 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.QkgR0pKUZi I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d invesalius=3.1.99995-1 && mkdir -p /build/invesalius-FfsgIG && dpkg-source --no-check -x /*.dsc /build/invesalius-FfsgIG/invesalius-3.1.99995 && chown -R builduser:builduser /build/invesalius-FfsgIG"' exec /tmp/mmdebstrap.QkgR0pKUZi Reading package lists... NOTICE: 'invesalius' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/invesalius.git Please use: git clone https://salsa.debian.org/med-team/invesalius.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 89.1 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210927T025314Z bookworm/main invesalius 3.1.99995-1 (dsc) [2260 B] Get:2 http://snapshot.notset.fr/archive/debian/20210927T025314Z bookworm/main invesalius 3.1.99995-1 (tar) [89.1 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210927T025314Z bookworm/main invesalius 3.1.99995-1 (diff) [10.8 kB] Fetched 89.1 MB in 1min 10s (1278 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'invesalius_3.1.99995-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting invesalius in /build/invesalius-FfsgIG/invesalius-3.1.99995 dpkg-source: info: unpacking invesalius_3.1.99995.orig.tar.gz dpkg-source: info: unpacking invesalius_3.1.99995-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 11_brainseg_shebang.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/invesalius-FfsgIG/invesalius-3.1.99995 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1632244267" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.QkgR0pKUZi dpkg-buildpackage: info: source package invesalius dpkg-buildpackage: info: source version 3.1.99995-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' # dh_auto_clean rm -f invesalius3 make[1]: Leaving directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' dh_clean rm -rf build make[1]: Leaving directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' dh_auto_configure I: pybuild base:232: python3.9 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/invesalius-FfsgIG/invesalius-3.1.99995/invesalius_cy/interpolation.pxd tree = Parsing.p_module(s, pxd, full_module_name) Compiling invesalius_cy/mips.pyx because it changed. Compiling invesalius_cy/interpolation.pyx because it changed. Compiling invesalius_cy/transforms.pyx because it changed. Compiling invesalius_cy/floodfill.pyx because it changed. Compiling invesalius_cy/cy_mesh.pyx because it changed. [1/5] Cythonizing invesalius_cy/cy_mesh.pyx [2/5] Cythonizing invesalius_cy/floodfill.pyx [3/5] Cythonizing invesalius_cy/interpolation.pyx [4/5] Cythonizing invesalius_cy/mips.pyx [5/5] Cythonizing invesalius_cy/transforms.pyx running config make[1]: Leaving directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' debian/rules override_dh_auto_build make[1]: Entering directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' python3 setup.py build_ext --inplace running build_ext Compiler unix building 'invesalius_cy.mips' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/invesalius_cy x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/invesalius-FfsgIG/invesalius-3.1.99995=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c invesalius_cy/mips.c -o build/temp.linux-x86_64-3.9/invesalius_cy/mips.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from invesalius_cy/mips.c:623: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ invesalius_cy/mips.c: In function ‘__Pyx_InitGlobals’: invesalius_cy/mips.c:23527:1: warning: ‘PyEval_InitThreads’ is deprecated [-Wdeprecated-declarations] 23527 | PyEval_InitThreads(); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.9/Python.h:154, from invesalius_cy/mips.c:17: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ At top level: invesalius_cy/mips.c:3907:14: warning: ‘__pyx_f_13invesalius_cy_4mips_get_opacity_f32’ defined but not used [-Wunused-function] 3907 | static float __pyx_f_13invesalius_cy_4mips_get_opacity_f32(__pyx_t_13invesalius_cy_4mips_DTYPEF32_t __pyx_v_vl, __pyx_t_13invesalius_cy_4mips_DTYPE16_t __pyx_v_wl, __pyx_t_13invesalius_cy_4mips_DTYPE16_t __pyx_v_ww) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ invesalius_cy/mips.c:3652:48: warning: ‘__pyx_f_13invesalius_cy_4mips_get_colour’ defined but not used [-Wunused-function] 3652 | static __pyx_t_13invesalius_cy_4mips_DTYPE16_t __pyx_f_13invesalius_cy_4mips_get_colour(__pyx_t_13invesalius_cy_4mips_DTYPE16_t __pyx_v_vl, __pyx_t_13invesalius_cy_4mips_DTYPE16_t __pyx_v_wl, __pyx_t_13invesalius_cy_4mips_DTYPE16_t __pyx_v_ww) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/invesalius-FfsgIG/invesalius-3.1.99995=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/invesalius_cy/mips.o -o /build/invesalius-FfsgIG/invesalius-3.1.99995/invesalius_cy/mips.cpython-39-x86_64-linux-gnu.so -fopenmp building 'invesalius_cy.interpolation' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/invesalius-FfsgIG/invesalius-3.1.99995=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c invesalius_cy/interpolation.c -o build/temp.linux-x86_64-3.9/invesalius_cy/interpolation.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from invesalius_cy/interpolation.c:623: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ invesalius_cy/interpolation.c: In function ‘__Pyx_InitGlobals’: invesalius_cy/interpolation.c:28491:1: warning: ‘PyEval_InitThreads’ is deprecated [-Wdeprecated-declarations] 28491 | PyEval_InitThreads(); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.9/Python.h:154, from invesalius_cy/interpolation.c:17: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/invesalius-FfsgIG/invesalius-3.1.99995=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/invesalius_cy/interpolation.o -o /build/invesalius-FfsgIG/invesalius-3.1.99995/invesalius_cy/interpolation.cpython-39-x86_64-linux-gnu.so -fopenmp building 'invesalius_cy.transforms' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/invesalius-FfsgIG/invesalius-3.1.99995=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c invesalius_cy/transforms.c -o build/temp.linux-x86_64-3.9/invesalius_cy/transforms.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from invesalius_cy/transforms.c:623: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ invesalius_cy/transforms.c: In function ‘__pyx_pf_13invesalius_cy_10transforms_4apply_view_matrix_transform’: invesalius_cy/transforms.c:4529:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 4529 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c:4667:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 4667 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c:4805:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 4805 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c: In function ‘__pyx_pf_13invesalius_cy_10transforms_6apply_view_matrix_transform’: invesalius_cy/transforms.c:5321:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 5321 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c:5459:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 5459 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c:5597:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 5597 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c: In function ‘__pyx_pf_13invesalius_cy_10transforms_8apply_view_matrix_transform’: invesalius_cy/transforms.c:6113:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 6113 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c:6251:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 6251 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c:6389:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 6389 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c: In function ‘__Pyx_InitGlobals’: invesalius_cy/transforms.c:25585:1: warning: ‘PyEval_InitThreads’ is deprecated [-Wdeprecated-declarations] 25585 | PyEval_InitThreads(); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.9/Python.h:154, from invesalius_cy/transforms.c:17: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/invesalius-FfsgIG/invesalius-3.1.99995=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/invesalius_cy/transforms.o -o /build/invesalius-FfsgIG/invesalius-3.1.99995/invesalius_cy/transforms.cpython-39-x86_64-linux-gnu.so -fopenmp building 'invesalius_cy.floodfill' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/invesalius-FfsgIG/invesalius-3.1.99995=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c invesalius_cy/floodfill.cpp -o build/temp.linux-x86_64-3.9/invesalius_cy/floodfill.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from invesalius_cy/floodfill.cpp:638: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ invesalius_cy/floodfill.cpp: In function ‘int __Pyx_InitGlobals()’: invesalius_cy/floodfill.cpp:31277:20: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 31277 | PyEval_InitThreads(); | ^ In file included from /usr/include/python3.9/Python.h:154, from invesalius_cy/floodfill.cpp:18: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/invesalius-FfsgIG/invesalius-3.1.99995=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/invesalius_cy/floodfill.o -o /build/invesalius-FfsgIG/invesalius-3.1.99995/invesalius_cy/floodfill.cpython-39-x86_64-linux-gnu.so -fopenmp building 'invesalius_cy.cy_mesh' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/invesalius-FfsgIG/invesalius-3.1.99995=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c invesalius_cy/cy_mesh.cpp -o build/temp.linux-x86_64-3.9/invesalius_cy/cy_mesh.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from invesalius_cy/cy_mesh.cpp:638: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ invesalius_cy/cy_mesh.cpp: In function ‘int __Pyx_InitGlobals()’: invesalius_cy/cy_mesh.cpp:24013:20: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 24013 | PyEval_InitThreads(); | ^ In file included from /usr/include/python3.9/Python.h:154, from invesalius_cy/cy_mesh.cpp:18: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/invesalius-FfsgIG/invesalius-3.1.99995=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/invesalius_cy/cy_mesh.o -o /build/invesalius-FfsgIG/invesalius-3.1.99995/invesalius_cy/cy_mesh.cpython-39-x86_64-linux-gnu.so -fopenmp make[1]: Leaving directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_installdirs -a -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' make[1]: 'override_dh_auto_install' is up to date. make[1]: Leaving directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' debian/rules override_dh_install make[1]: Entering directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' echo '#!/bin/sh' > invesalius3 echo 'export INV_SAMPLE_DIR="/usr/share/doc/invesalius-examples/examples/"' >> invesalius3 echo 'export GDK_BACKEND=x11' >> invesalius3 echo 'export PYTHONPATH=$PYTHONPATH:"/usr/lib/invesalius"' >> invesalius3 echo 'export INVESALIUS_LIBRARY_PATH="/usr/share/invesalius/"' >> invesalius3 echo 'cd $INVESALIUS_LIBRARY_PATH' >> invesalius3 echo 'python3 app.py $@' >> invesalius3 dh_install make[1]: Leaving directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' dh_installdocs -a -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' dh_installchangelogs changelog.md make[1]: Leaving directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' dh_compress --exclude=LICENSE.pt.txt --exclude=.inv3 make[1]: Leaving directory '/build/invesalius-FfsgIG/invesalius-3.1.99995' dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild dh_strip -a -a -O--buildsystem=pybuild dh_makeshlibs -a -a -O--buildsystem=pybuild dh_shlibdeps -a -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package invesalius-bin: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package invesalius-bin: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'invesalius-bin' in '../invesalius-bin_3.1.99995-1_amd64.deb'. dpkg-deb: building package 'invesalius-bin-dbgsym' in '../invesalius-bin-dbgsym_3.1.99995-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../invesalius_3.1.99995-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/invesalius-FfsgIG /tmp/invesalius-3.1.99995-1bj1jk9rr I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.QkgR0pKUZi... I: success in 3359.2431 seconds md5: invesalius-bin-dbgsym_3.1.99995-1_amd64.deb: OK md5: invesalius-bin_3.1.99995-1_amd64.deb: OK sha1: invesalius-bin-dbgsym_3.1.99995-1_amd64.deb: OK sha1: invesalius-bin_3.1.99995-1_amd64.deb: OK sha256: invesalius-bin-dbgsym_3.1.99995-1_amd64.deb: OK sha256: invesalius-bin_3.1.99995-1_amd64.deb: OK Checksums: OK