Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/i/invesalius/invesalius_3.1.99994-1+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/invesalius-3.1.99994-1+b1qixkovzj/invesalius_3.1.99994-1+b1_amd64.buildinfo Get source package info: invesalius=3.1.99994-1 Source URL: http://snapshot.notset.fr/mr/package/invesalius/3.1.99994-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc2-1 binutils=2.35.1-3 binutils-common=2.35.1-3 binutils-x86-64-linux-gnu=2.35.1-3 bsdextrautils=2.36.1-1 bsdutils=1:2.36.1-1 build-essential=12.8 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-17 cython3=0.29.21-3 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.38-5 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.0-17 gcc=4:10.2.0-1 gcc-10=10.2.0-17 gcc-10-base=10.2.0-17 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.58 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libasan6=10.2.0-17 libatomic1=10.2.0-17 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-3 libblas3=3.9.0-3 libblkid1=2.36.1-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-4 libc-dev-bin=2.31-4 libc6=2.31-4 libc6-dev=2.31-4 libcap-ng0=0.7.9-2.2 libcc1-0=10.2.0-17 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-3 libctf0=2.35.1-3 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.0-17 libgcc-s1=10.2.0-17 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran5=10.2.0-17 libglib2.0-0=2.66.2-1 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.0-17 libgpg-error0=1.38-2 libgssapi-krb5-2=1.17-10 libicu67=67.1-4 libisl22=0.22.1-1 libitm1=10.2.0-17 libk5crypto3=1.17-10 libkeyutils1=1.6.1-2 libkrb5-3=1.17-10 libkrb5support0=1.17-10 liblapack3=3.9.0-3 liblsan0=10.2.0-17 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmount1=2.36.1-1 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20200918-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnss-nis=3.1-4 libnss-nisplus=1.3-4 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libpython3-dev=3.9.0-3 libpython3-stdlib=3.9.0-3 libpython3.8-minimal=3.8.6-1 libpython3.8-stdlib=3.8.6-1 libpython3.9=3.9.0-5 libpython3.9-dev=3.9.0-5 libpython3.9-minimal=3.9.0-5 libpython3.9-stdlib=3.9.0-5 libquadmath0=10.2.0-17 libreadline8=8.1~rc2-2 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsigsegv2=2.12-2 libsmartcols1=2.36.1-1 libsqlite3-0=3.33.0-1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-17 libstdc++6=10.2.0-17 libsub-override-perl=0.09-2 libsystemd0=246.6-3 libtinfo6=6.2+20200918-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-17 libubsan1=10.2.0-17 libuchardet0=0.0.7-1 libudev1=246.6-3 libunistring2=0.9.10-4 libuuid1=2.36.1-1 libxml2=2.9.10+dfsg-6.2 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.6-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20200918-1 ncurses-bin=6.2+20200918-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 po-debconf=1.0.21 python3=3.9.0-3 python3-dev=3.9.0-3 python3-distutils=3.8.6-1 python3-lib2to3=3.8.6-1 python3-minimal=3.9.0-3 python3-numpy=1:1.19.4-1 python3-pkg-resources=50.3.0-1 python3.8=3.8.6-1 python3.8-minimal=3.8.6-1 python3.9=3.9.0-5 python3.9-dev=3.9.0-5 python3.9-minimal=3.9.0-5 readline-common=8.1~rc2-2 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.30+dfsg-7 util-linux=2.36.1-1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201119T152556Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d invesalius=3.1.99994-1 && mkdir -p /build/invesalius-dBiGRj && dpkg-source --no-check -x /*.dsc /build/invesalius-dBiGRj/invesalius-3.1.99994 && cd /build/invesalius-dBiGRj/invesalius-3.1.99994 && { printf '%s' 'invesalius (3.1.99994-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.9 as default -- amd64 / i386 Build Daemon (x86-csail-01) Thu, 19 Nov 2020 04:09:27 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/invesalius-dBiGRj" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/invesalius-dBiGRj/invesalius-3.1.99994 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605758967" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/invesalius-dBiGRj /tmp/invesalius-3.1.99994-1+b1qixkovzj bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201119T152556Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.3bF6RhoU4H as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.3bF6RhoU4H Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201119T152556Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201119T152556Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1103 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4690 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201119T152556Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.3bF6RhoU4H Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201119T152556Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 21s (1079 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.3bF6RhoU4H I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d invesalius=3.1.99994-1 && mkdir -p /build/invesalius-dBiGRj && dpkg-source --no-check -x /*.dsc /build/invesalius-dBiGRj/invesalius-3.1.99994 && cd /build/invesalius-dBiGRj/invesalius-3.1.99994 && { printf '%s' 'invesalius (3.1.99994-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.9 as default -- amd64 / i386 Build Daemon (x86-csail-01) Thu, 19 Nov 2020 04:09:27 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/invesalius-dBiGRj"' exec /tmp/mmdebstrap.3bF6RhoU4H Reading package lists... NOTICE: 'invesalius' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/invesalius.git Please use: git clone https://salsa.debian.org/med-team/invesalius.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 80.3 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main invesalius 3.1.99994-1 (dsc) [2259 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main invesalius 3.1.99994-1 (tar) [80.3 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main invesalius 3.1.99994-1 (diff) [11.9 kB] Fetched 80.3 MB in 1min 7s (1197 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'invesalius_3.1.99994-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting invesalius in /build/invesalius-dBiGRj/invesalius-3.1.99994 dpkg-source: info: unpacking invesalius_3.1.99994.orig.tar.gz dpkg-source: info: unpacking invesalius_3.1.99994-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_import_cython_modules.patch dpkg-source: info: applying 11_using_imageio.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/invesalius-dBiGRj/invesalius-3.1.99994 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605758967" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.3bF6RhoU4H dpkg-buildpackage: info: source package invesalius dpkg-buildpackage: info: source version 3.1.99994-1+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-csail-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' # dh_auto_clean rm -f invesalius3 make[1]: Leaving directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' dh_clean rm -rf invesalius_cy rm -rf build make[1]: Leaving directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' debian/rules build-arch dh build-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' mkdir -p invesalius_cy/ touch invesalius_cy/__init__.py cp invesalius/data/*.pyx invesalius_cy cp invesalius/data/*.pxd invesalius_cy dh_auto_configure I: pybuild base:232: python3.9 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/invesalius-dBiGRj/invesalius-3.1.99994/invesalius_cy/cy_mesh.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/invesalius-dBiGRj/invesalius-3.1.99994/invesalius_cy/floodfill.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/invesalius-dBiGRj/invesalius-3.1.99994/invesalius_cy/interpolation.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/invesalius-dBiGRj/invesalius-3.1.99994/invesalius_cy/mips.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/invesalius-dBiGRj/invesalius-3.1.99994/invesalius_cy/transforms.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling invesalius_cy/mips.pyx because it changed. Compiling invesalius_cy/interpolation.pyx because it changed. Compiling invesalius_cy/transforms.pyx because it changed. Compiling invesalius_cy/floodfill.pyx because it changed. Compiling invesalius_cy/cy_mesh.pyx because it changed. [1/5] Cythonizing invesalius_cy/cy_mesh.pyx [2/5] Cythonizing invesalius_cy/floodfill.pyx [3/5] Cythonizing invesalius_cy/interpolation.pyx [4/5] Cythonizing invesalius_cy/mips.pyx [5/5] Cythonizing invesalius_cy/transforms.pyx running config make[1]: Leaving directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' debian/rules override_dh_auto_build make[1]: Entering directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' python3 setup.py build_ext --inplace running build_ext building 'invesalius_cy.mips' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/invesalius_cy x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/invesalius-dBiGRj/invesalius-3.1.99994=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c invesalius_cy/mips.c -o build/temp.linux-x86_64-3.9/invesalius_cy/mips.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from invesalius_cy/mips.c:635: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ invesalius_cy/mips.c: In function ‘__Pyx_InitGlobals’: invesalius_cy/mips.c:23548:1: warning: ‘PyEval_InitThreads’ is deprecated [-Wdeprecated-declarations] 23548 | PyEval_InitThreads(); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.9/Python.h:145, from invesalius_cy/mips.c:29: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ At top level: invesalius_cy/mips.c:3922:14: warning: ‘__pyx_f_13invesalius_cy_4mips_get_opacity_f32’ defined but not used [-Wunused-function] 3922 | static float __pyx_f_13invesalius_cy_4mips_get_opacity_f32(__pyx_t_13invesalius_cy_4mips_DTYPEF32_t __pyx_v_vl, __pyx_t_13invesalius_cy_4mips_DTYPE16_t __pyx_v_wl, __pyx_t_13invesalius_cy_4mips_DTYPE16_t __pyx_v_ww) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ invesalius_cy/mips.c:3667:48: warning: ‘__pyx_f_13invesalius_cy_4mips_get_colour’ defined but not used [-Wunused-function] 3667 | static __pyx_t_13invesalius_cy_4mips_DTYPE16_t __pyx_f_13invesalius_cy_4mips_get_colour(__pyx_t_13invesalius_cy_4mips_DTYPE16_t __pyx_v_vl, __pyx_t_13invesalius_cy_4mips_DTYPE16_t __pyx_v_wl, __pyx_t_13invesalius_cy_4mips_DTYPE16_t __pyx_v_ww) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/invesalius-dBiGRj/invesalius-3.1.99994=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/invesalius_cy/mips.o -o /build/invesalius-dBiGRj/invesalius-3.1.99994/invesalius_cy/mips.cpython-39-x86_64-linux-gnu.so -fopenmp building 'invesalius_cy.interpolation' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/invesalius-dBiGRj/invesalius-3.1.99994=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c invesalius_cy/interpolation.c -o build/temp.linux-x86_64-3.9/invesalius_cy/interpolation.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from invesalius_cy/interpolation.c:635: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ invesalius_cy/interpolation.c: In function ‘__Pyx_InitGlobals’: invesalius_cy/interpolation.c:28512:1: warning: ‘PyEval_InitThreads’ is deprecated [-Wdeprecated-declarations] 28512 | PyEval_InitThreads(); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.9/Python.h:145, from invesalius_cy/interpolation.c:29: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/invesalius-dBiGRj/invesalius-3.1.99994=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/invesalius_cy/interpolation.o -o /build/invesalius-dBiGRj/invesalius-3.1.99994/invesalius_cy/interpolation.cpython-39-x86_64-linux-gnu.so -fopenmp building 'invesalius_cy.transforms' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/invesalius-dBiGRj/invesalius-3.1.99994=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c invesalius_cy/transforms.c -o build/temp.linux-x86_64-3.9/invesalius_cy/transforms.o -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from invesalius_cy/transforms.c:635: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ invesalius_cy/transforms.c: In function ‘__pyx_pf_13invesalius_cy_10transforms_4apply_view_matrix_transform’: invesalius_cy/transforms.c:4544:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 4544 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c:4682:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 4682 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c:4820:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 4820 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c: In function ‘__pyx_pf_13invesalius_cy_10transforms_6apply_view_matrix_transform’: invesalius_cy/transforms.c:5336:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 5336 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c:5474:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 5474 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c:5612:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 5612 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c: In function ‘__pyx_pf_13invesalius_cy_10transforms_8apply_view_matrix_transform’: invesalius_cy/transforms.c:6128:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 6128 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c:6266:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 6266 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c:6404:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 6404 | for (__pyx_t_7 = __pyx_v_n; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) { | ^ invesalius_cy/transforms.c: In function ‘__Pyx_InitGlobals’: invesalius_cy/transforms.c:25606:1: warning: ‘PyEval_InitThreads’ is deprecated [-Wdeprecated-declarations] 25606 | PyEval_InitThreads(); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.9/Python.h:145, from invesalius_cy/transforms.c:29: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/invesalius-dBiGRj/invesalius-3.1.99994=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/invesalius_cy/transforms.o -o /build/invesalius-dBiGRj/invesalius-3.1.99994/invesalius_cy/transforms.cpython-39-x86_64-linux-gnu.so -fopenmp building 'invesalius_cy.floodfill' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/invesalius-dBiGRj/invesalius-3.1.99994=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c invesalius_cy/floodfill.cpp -o build/temp.linux-x86_64-3.9/invesalius_cy/floodfill.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from invesalius_cy/floodfill.cpp:644: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ invesalius_cy/floodfill.cpp: In function ‘int __Pyx_InitGlobals()’: invesalius_cy/floodfill.cpp:31297:20: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 31297 | PyEval_InitThreads(); | ^ In file included from /usr/include/python3.9/Python.h:145, from invesalius_cy/floodfill.cpp:24: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/invesalius-dBiGRj/invesalius-3.1.99994=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/invesalius_cy/floodfill.o -o /build/invesalius-dBiGRj/invesalius-3.1.99994/invesalius_cy/floodfill.cpython-39-x86_64-linux-gnu.so building 'invesalius_cy.cy_mesh' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/invesalius-dBiGRj/invesalius-3.1.99994=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c invesalius_cy/cy_mesh.cpp -o build/temp.linux-x86_64-3.9/invesalius_cy/cy_mesh.o -fopenmp -std=c++11 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from invesalius_cy/cy_mesh.cpp:652: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ invesalius_cy/cy_mesh.cpp: In function ‘int __Pyx_InitGlobals()’: invesalius_cy/cy_mesh.cpp:24025:20: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 24025 | PyEval_InitThreads(); | ^ In file included from /usr/include/python3.9/Python.h:145, from invesalius_cy/cy_mesh.cpp:32: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/invesalius-dBiGRj/invesalius-3.1.99994=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/invesalius_cy/cy_mesh.o -o /build/invesalius-dBiGRj/invesalius-3.1.99994/invesalius_cy/cy_mesh.cpython-39-x86_64-linux-gnu.so -fopenmp -std=c++11 make[1]: Leaving directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:232: cd /build/invesalius-dBiGRj/invesalius-3.1.99994/.pybuild/cpython3_3.9_invesalius/build; python3.9 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_installdirs -a -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' make[1]: 'override_dh_auto_install' is up to date. make[1]: Leaving directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' debian/rules override_dh_install make[1]: Entering directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' echo '#!/bin/sh' > invesalius3 echo 'export INV_SAMPLE_DIR="/usr/share/doc/invesalius-examples/examples/"' >> invesalius3 echo 'export GDK_BACKEND=x11' >> invesalius3 echo 'export PYTHONPATH=$PYTHONPATH:"/usr/lib/invesalius"' >> invesalius3 echo 'export INVESALIUS_LIBRARY_PATH="/usr/share/invesalius/"' >> invesalius3 echo 'cd $INVESALIUS_LIBRARY_PATH' >> invesalius3 echo 'python3 app.py $@' >> invesalius3 dh_install make[1]: Leaving directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' dh_installdocs -a -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' dh_installchangelogs changelog.md make[1]: Leaving directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installinit -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' dh_compress --exclude=LICENSE.pt.txt --exclude=.inv3 make[1]: Leaving directory '/build/invesalius-dBiGRj/invesalius-3.1.99994' dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/invesalius-bin/usr/lib/invesalius/invesalius_cy/floodfill.cpython-39-x86_64-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package invesalius-bin: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package invesalius-bin: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'invesalius-bin' in '../invesalius-bin_3.1.99994-1+b1_amd64.deb'. dpkg-deb: building package 'invesalius-bin-dbgsym' in '../invesalius-bin-dbgsym_3.1.99994-1+b1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../invesalius_3.1.99994-1+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/invesalius-dBiGRj /tmp/invesalius-3.1.99994-1+b1qixkovzj I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.3bF6RhoU4H... I: success in 1021.7328 seconds md5: invesalius-bin-dbgsym_3.1.99994-1+b1_amd64.deb: OK md5: invesalius-bin_3.1.99994-1+b1_amd64.deb: OK sha1: invesalius-bin-dbgsym_3.1.99994-1+b1_amd64.deb: OK sha1: invesalius-bin_3.1.99994-1+b1_amd64.deb: OK sha256: invesalius-bin-dbgsym_3.1.99994-1+b1_amd64.deb: OK sha256: invesalius-bin_3.1.99994-1+b1_amd64.deb: OK Checksums: OK