Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/h/hmmer/hmmer_3.3.2+dfsg-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/hmmer-3.3.2+dfsg-17ankg_tq/hmmer_3.3.2+dfsg-1_all.buildinfo Get source package info: hmmer=3.3.2+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/hmmer/3.3.2+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-1 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-1 binutils=2.35.1-6 binutils-common=2.35.1-6 binutils-x86-64-linux-gnu=2.35.1-6 bsdextrautils=2.36.1-4 bsdutils=1:2.36.1-4 build-essential=12.8 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.1-3 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.1-3 gcc=4:10.2.0-1 gcc-10=10.2.1-3 gcc-10-base=10.2.1-3 gettext=0.21-3 gettext-base=0.21-3 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libarchive-zip-perl=1.68-1 libasan6=10.2.1-3 libatomic1=10.2.1-3 libattr1=1:2.4.48-6 libaudit-common=1:3.0-1 libaudit1=1:3.0-1 libbinutils=2.35.1-6 libblkid1=2.36.1-4 libbz2-1.0=1.0.8-4 libc-bin=2.31-6 libc-dev-bin=2.31-6 libc6=2.31-6 libc6-dev=2.31-6 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-3 libcom-err2=1.45.6-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-6 libctf0=2.35.1-6 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.3.1 libdivsufsort-dev=2.0.1-5 libdivsufsort3=2.0.1-5 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.1-3 libgcc-s1=10.2.1-3 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-3 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-5 libisl23=0.23-1 libitm1=10.2.1-3 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblsan0=10.2.1-3 liblz4-1=1.9.3-1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-4 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-1 libpython3.9-stdlib=3.9.1-1 libquadmath0=10.2.1-3 libreadline8=8.1-1 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsigsegv2=2.12-3 libsmartcols1=2.36.1-4 libsqlite3-0=3.34.0-1 libssl1.1=1.1.1i-1 libstdc++-10-dev=10.2.1-3 libstdc++6=10.2.1-3 libsub-override-perl=0.09-2 libsystemd0=247.2-3 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.1-3 libubsan1=10.2.1-3 libuchardet0=0.0.7-1 libudev1=247.2-3 libunistring2=0.9.10-4 libuuid1=2.36.1-4 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.9.15-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 patch=2.7.6-6 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 po-debconf=1.0.21+nmu1 python3=3.9.1-1 python3-minimal=3.9.1-1 python3.9=3.9.1-1 python3.9-minimal=3.9.1-1 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020e-1 util-linux=2.36.1-4 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201230T203527Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d hmmer=3.3.2+dfsg-1 && mkdir -p /build/hmmer-PIahSR && dpkg-source --no-check -x /*.dsc /build/hmmer-PIahSR/hmmer-3.3.2+dfsg && chown -R builduser:builduser /build/hmmer-PIahSR" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/hmmer-PIahSR/hmmer-3.3.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609411825" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/hmmer-PIahSR /tmp/hmmer-3.3.2+dfsg-17ankg_tq bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.o5rogfebGC as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.o5rogfebGC Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (880 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4648 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-6) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201230T203527Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.o5rogfebGC Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1149 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.o5rogfebGC I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d hmmer=3.3.2+dfsg-1 && mkdir -p /build/hmmer-PIahSR && dpkg-source --no-check -x /*.dsc /build/hmmer-PIahSR/hmmer-3.3.2+dfsg && chown -R builduser:builduser /build/hmmer-PIahSR"' exec /tmp/mmdebstrap.o5rogfebGC Reading package lists... NOTICE: 'hmmer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/hmmer.git Please use: git clone https://salsa.debian.org/med-team/hmmer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.4 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main hmmer 3.3.2+dfsg-1 (dsc) [2128 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main hmmer 3.3.2+dfsg-1 (tar) [12.4 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main hmmer 3.3.2+dfsg-1 (diff) [14.3 kB] Fetched 12.4 MB in 10s (1237 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'hmmer_3.3.2+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting hmmer in /build/hmmer-PIahSR/hmmer-3.3.2+dfsg dpkg-source: info: unpacking hmmer_3.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer_3.3.2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_manpage_extension.patch dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch dpkg-source: info: applying verbose-easel dpkg-source: info: applying hardening dpkg-source: info: applying skip_threads_check dpkg-source: info: applying sub_make_parallel dpkg-source: info: applying spelling I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/hmmer-PIahSR/hmmer-3.3.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609411825" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.o5rogfebGC dpkg-buildpackage: info: source package hmmer dpkg-buildpackage: info: source version 3.3.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-source: info: using options from hmmer-3.3.2+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' dh_auto_clean rm -f testsuite/esltmp* rm -f easel/testsuite/esltmp* rm -f tutorial/MADE1.hmm.h3? rm -f config.log config.status configure find . -name Makefile -delete make[1]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' dh_clean debian/rules binary-indep dh binary-indep dh_update_autotools_config -i debian/rules override_dh_autoreconf make[1]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' AUTOHEADER=true dh_autoreconf make[1]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" dh_auto_configure -- --enable-threads --enable-sse ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-threads --enable-sse configure: Configuring HMMER3 for your system. checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for strip... strip checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our SSE code... yes configure: Activating Intel/AMD SSE vector DP implementation checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes checking compiler support --start-group... yes checking for gzip... /bin/gzip checking for python3... yes checking for library containing clock_gettime... none required checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... yes checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_sse/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating documentation/userguide/inclusions/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/titlepage_daemon.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/alimask.man config.status: creating documentation/man/hmmalign.man config.status: creating documentation/man/hmmbuild.man config.status: creating documentation/man/hmmc2.man config.status: creating documentation/man/hmmconvert.man config.status: creating documentation/man/hmmemit.man config.status: creating documentation/man/hmmer.man config.status: creating documentation/man/hmmfetch.man config.status: creating documentation/man/hmmlogo.man config.status: creating documentation/man/hmmpgmd.man config.status: creating documentation/man/hmmpgmd_shard.man config.status: creating documentation/man/hmmpress.man config.status: creating documentation/man/hmmscan.man config.status: creating documentation/man/hmmsearch.man config.status: creating documentation/man/hmmsim.man config.status: creating documentation/man/hmmstat.man config.status: creating documentation/man/jackhmmer.man config.status: creating documentation/man/makehmmerdb.man config.status: creating documentation/man/nhmmer.man config.status: creating documentation/man/nhmmscan.man config.status: creating documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-mixdchlet.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: linking src/impl_sse to src/impl HMMER configuration: compiler: gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread host: x86_64-pc-linux-gnu linker: -Wl,-z,relro -Wl,-z,now -flto libraries: DP implementation: sse Now do 'make' to build HMMER, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages, '(cd easel; make install)' to install Easel tools. make[1]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' export V=VERBOSE ; dh_auto_build make -j4 make[2]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' make -C easel all make[3]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel' gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c easel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_alloc.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_alphabet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_arr2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_arr3.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_bitfield.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_buffer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_cluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_composition.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_cpu.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_dirichlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_distance.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_dmatrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_dsqdata.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_exponential.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_fileparser.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_gamma.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_gencode.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_getopts.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_gev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_graph.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_gumbel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_heap.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_histogram.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_hmm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_huffman.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_hyperexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_json.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_keyhash.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_matrixops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_mem.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_minimizer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_mixdchlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_mixgev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_mpi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msacluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_a2m.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_afa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_clustal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_phylip.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_psiblast.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_selex.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_stockholm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msashuffle.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msaweight.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_normal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_paml.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_quicksort.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_random.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_rand64.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_randomseq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_ratematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_recorder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_red_black.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_regexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_rootfinder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_scorematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_sq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_sqio.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_sqio_ascii.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_sqio_ncbi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_ssi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_stack.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_stats.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_stopwatch.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_stretchexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_subcmd.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_threads.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_tree.c In file included from esl_threads.c:24: /usr/include/x86_64-linux-gnu/sys/sysctl.h:21:2: warning: #warning "The header is deprecated and will be removed." [-Wcpp] 21 | #warning "The header is deprecated and will be removed." | ^~~~~~~ gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_varint.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_vectorops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_weibull.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_workqueue.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_wuss.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_sse.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_avx.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_avx512.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_neon.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_vmx.c /usr/bin/ar -r libeasel.a easel.o esl_alloc.o esl_alphabet.o esl_arr2.o esl_arr3.o esl_bitfield.o esl_buffer.o esl_cluster.o esl_composition.o esl_cpu.o esl_dirichlet.o esl_distance.o esl_dmatrix.o esl_dsqdata.o esl_exponential.o esl_fileparser.o esl_gamma.o esl_gencode.o esl_getopts.o esl_gev.o esl_graph.o esl_gumbel.o esl_heap.o esl_histogram.o esl_hmm.o esl_huffman.o esl_hyperexp.o esl_json.o esl_keyhash.o esl_matrixops.o esl_mem.o esl_minimizer.o esl_mixdchlet.o esl_mixgev.o esl_mpi.o esl_msa.o esl_msacluster.o esl_msafile.o esl_msafile2.o esl_msafile_a2m.o esl_msafile_afa.o esl_msafile_clustal.o esl_msafile_phylip.o esl_msafile_psiblast.o esl_msafile_selex.o esl_msafile_stockholm.o esl_msashuffle.o esl_msaweight.o esl_normal.o esl_paml.o esl_quicksort.o esl_random.o esl_rand64.o esl_randomseq.o esl_ratematrix.o esl_recorder.o esl_red_black.o esl_regexp.o esl_rootfinder.o esl_scorematrix.o esl_sq.o esl_sqio.o esl_sqio_ascii.o esl_sqio_ncbi.o esl_ssi.o esl_stack.o esl_stats.o esl_stopwatch.o esl_stretchexp.o esl_subcmd.o esl_threads.o esl_tree.o esl_varint.o esl_vectorops.o esl_weibull.o esl_workqueue.o esl_wuss.o esl_sse.o esl_avx.o esl_avx512.o esl_neon.o esl_vmx.o > /dev/null 2>&1 make -C miniapps all make[4]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel/miniapps' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-afetch esl-afetch.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimanip esl-alimanip.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimap esl-alimap.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimask esl-alimask.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimerge esl-alimerge.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alipid esl-alipid.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alirev esl-alirev.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alistat esl-alistat.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compalign esl-compalign.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compstruct esl-compstruct.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-construct esl-construct.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-histplot esl-histplot.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mask esl-mask.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mixdchlet esl-mixdchlet.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-reformat esl-reformat.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-selectn esl-selectn.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqrange esl-seqrange.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqstat esl-seqstat.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-sfetch esl-sfetch.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-shuffle esl-shuffle.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-ssdraw esl-ssdraw.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-translate esl-translate.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-weight esl-weight.c -leasel -lm gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -c cmd_alistat.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -c cmd_downsample.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -c cmd_filter.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -c cmd_index.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o easel easel.c cmd_alistat.o cmd_downsample.o cmd_filter.o cmd_index.o -leasel -lm make[4]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel/miniapps' make[3]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel' make -C src all make[3]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src' gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o alimask.o -c alimask.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o build.o -c build.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb.o -c cachedb.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb_shard.o -c cachedb_shard.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o emit.o -c emit.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o errors.o -c errors.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o evalues.o -c evalues.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o eweight.o -c eweight.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_decoding.o -c generic_decoding.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback.o -c generic_fwdback.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_chk.o -c generic_fwdback_chk.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_banded.o -c generic_fwdback_banded.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_null2.o -c generic_null2.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_msv.o -c generic_msv.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_optacc.o -c generic_optacc.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_stotrace.o -c generic_stotrace.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_viterbi.o -c generic_viterbi.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_vtrace.o -c generic_vtrace.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o h2_io.o -c h2_io.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o heatmap.o -c heatmap.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmlogo.o -c hmmlogo.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr.o -c hmmdmstr.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr_shard.o -c hmmdmstr_shard.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmd_search_status.o -c hmmd_search_status.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr.o -c hmmdwrkr.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr_shard.o -c hmmdwrkr_shard.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdutils.o -c hmmdutils.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmer.o -c hmmer.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o logsum.o -c logsum.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelconfig.o -c modelconfig.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelstats.o -c modelstats.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o mpisupport.o -c mpisupport.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o seqmodel.o -c seqmodel.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o tracealign.o -c tracealign.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_alidisplay.o -c p7_alidisplay.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_bg.o -c p7_bg.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_builder.o -c p7_builder.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domain.o -c p7_domain.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domaindef.o -c p7_domaindef.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gbands.o -c p7_gbands.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmx.o -c p7_gmx.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxb.o -c p7_gmxb.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxchk.o -c p7_gmxchk.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hit.o -c p7_hit.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmm.o -c p7_hmm.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmcache.o -c p7_hmmcache.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmd_search_stats.o -c p7_hmmd_search_stats.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmfile.o -c p7_hmmfile.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmwindow.o -c p7_hmmwindow.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_pipeline.o -c p7_pipeline.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_prior.o -c p7_prior.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_profile.o -c p7_profile.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_spensemble.o -c p7_spensemble.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_tophits.o -c p7_tophits.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_trace.o -c p7_trace.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_scoredata.o -c p7_scoredata.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd2msa.o -c hmmpgmd2msa.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_alphabet.o -c fm_alphabet.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_general.o -c fm_general.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_sse.o -c fm_sse.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_ssv.o -c fm_ssv.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmalign.o -c hmmalign.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmbuild.o -c hmmbuild.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmconvert.o -c hmmconvert.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmemit.o -c hmmemit.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmfetch.o -c hmmfetch.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd.o -c hmmpgmd.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd_shard.o -c hmmpgmd_shard.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpress.o -c hmmpress.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmscan.o -c hmmscan.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsearch.o -c hmmsearch.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsim.o -c hmmsim.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmstat.o -c hmmstat.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o jackhmmer.o -c jackhmmer.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o phmmer.o -c phmmer.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmer.o -c nhmmer.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmscan.o -c nhmmscan.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o makehmmerdb.o -c makehmmerdb.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmc2.o -c hmmc2.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmerfm-exactmatch.o -c hmmerfm-exactmatch.c /usr/bin/ar -r libhmmer.a build.o cachedb.o cachedb_shard.o emit.o errors.o evalues.o eweight.o generic_decoding.o generic_fwdback.o generic_fwdback_chk.o generic_fwdback_banded.o generic_null2.o generic_msv.o generic_optacc.o generic_stotrace.o generic_viterbi.o generic_vtrace.o h2_io.o heatmap.o hmmlogo.o hmmdmstr.o hmmdmstr_shard.o hmmd_search_status.o hmmdwrkr.o hmmdwrkr_shard.o hmmdutils.o hmmer.o logsum.o modelconfig.o modelstats.o mpisupport.o seqmodel.o tracealign.o p7_alidisplay.o p7_bg.o p7_builder.o p7_domain.o p7_domaindef.o p7_gbands.o p7_gmx.o p7_gmxb.o p7_gmxchk.o p7_hit.o p7_hmm.o p7_hmmcache.o p7_hmmd_search_stats.o p7_hmmfile.o p7_hmmwindow.o p7_pipeline.o p7_prior.o p7_profile.o p7_spensemble.o p7_tophits.o p7_trace.o p7_scoredata.o hmmpgmd2msa.o fm_alphabet.o fm_general.o fm_sse.o fm_ssv.o > /dev/null 2>&1 make -C impl_sse libhmmer-impl.stamp make[4]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o decoding.o -c decoding.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o fwdback.o -c fwdback.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o io.o -c io.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o ssvfilter.o -c ssvfilter.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o msvfilter.o -c msvfilter.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o null2.o -c null2.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o optacc.o -c optacc.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o stotrace.o -c stotrace.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o vitfilter.o -c vitfilter.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_omx.o -c p7_omx.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_oprofile.o -c p7_oprofile.c gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o mpi.o -c mpi.c /usr/bin/ar -r ../libhmmer.a decoding.o fwdback.o io.o ssvfilter.o msvfilter.o null2.o optacc.o stotrace.o vitfilter.o p7_omx.o p7_oprofile.o mpi.o > /dev/null 2>&1 make[4]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o alimask alimask.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmalign hmmalign.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmbuild hmmbuild.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmconvert hmmconvert.o -lhmmer -leasel -ldivsufsort -lm In function ‘usual_master’, inlined from ‘main’ at hmmbuild.c:463:7: hmmbuild.c:561:3: warning: argument 1 range [18446744022169944064, 18446744073709551592] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 561 | ESL_ALLOC(info, sizeof(*info) * infocnt); | ^ hmmbuild.c: In function ‘main’: /usr/include/stdlib.h:539:14: note: in a call to allocation function ‘malloc’ declared here 539 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^ gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmemit hmmemit.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmfetch hmmfetch.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmlogo hmmlogo.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmpgmd hmmpgmd.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmpgmd_shard hmmpgmd_shard.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmpress hmmpress.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmscan hmmscan.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmsearch hmmsearch.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmsim hmmsim.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmstat hmmstat.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o jackhmmer jackhmmer.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o phmmer phmmer.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o nhmmer nhmmer.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o nhmmscan nhmmscan.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o makehmmerdb makehmmerdb.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmc2 hmmc2.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmerfm-exactmatch hmmerfm-exactmatch.o -lhmmer -leasel -ldivsufsort -lm make[3]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src' make -C profmark all make[3]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/profmark' gcc -I../easel -I../easel -I../src -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -o create-profmark.o -c create-profmark.c gcc -I../easel -I../easel -I../src -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -o rocplot.o -c rocplot.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o rocplot rocplot.o -lhmmer -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o create-profmark create-profmark.o -lhmmer -leasel -lm make[3]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/profmark' make[2]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' make[1]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' export V=VERBOSE ; make check -j32 | tee debian/test_log make[2]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' make -C easel tests make[3]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o easel_utest -I. -I. -L. -DeslEASEL_TESTDRIVE ./easel.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alloc_utest -I. -I. -L. -DeslALLOC_TESTDRIVE ./esl_alloc.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_bitfield_utest -I. -I. -L. -DeslBITFIELD_TESTDRIVE ./esl_bitfield.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alphabet_utest -I. -I. -L. -DeslALPHABET_TESTDRIVE ./esl_alphabet.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cluster_utest -I. -I. -L. -DeslCLUSTER_TESTDRIVE ./esl_cluster.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_buffer_utest -I. -I. -L. -DeslBUFFER_TESTDRIVE ./esl_buffer.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cpu_utest -I. -I. -L. -DeslCPU_TESTDRIVE ./esl_cpu.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dmatrix_utest -I. -I. -L. -DeslDMATRIX_TESTDRIVE ./esl_dmatrix.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_exponential_utest -I. -I. -L. -DeslEXPONENTIAL_TESTDRIVE ./esl_exponential.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_distance_utest -I. -I. -L. -DeslDISTANCE_TESTDRIVE ./esl_distance.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dirichlet_utest -I. -I. -L. -DeslDIRICHLET_TESTDRIVE ./esl_dirichlet.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dsqdata_utest -I. -I. -L. -DeslDSQDATA_TESTDRIVE ./esl_dsqdata.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_graph_utest -I. -I. -L. -DeslGRAPH_TESTDRIVE ./esl_graph.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gamma_utest -I. -I. -L. -DeslGAMMA_TESTDRIVE ./esl_gamma.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_fileparser_utest -I. -I. -L. -DeslFILEPARSER_TESTDRIVE ./esl_fileparser.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gencode_utest -I. -I. -L. -DeslGENCODE_TESTDRIVE ./esl_gencode.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_getopts_utest -I. -I. -L. -DeslGETOPTS_TESTDRIVE ./esl_getopts.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_heap_utest -I. -I. -L. -DeslHEAP_TESTDRIVE ./esl_heap.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gumbel_utest -I. -I. -L. -DeslGUMBEL_TESTDRIVE ./esl_gumbel.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_json_utest -I. -I. -L. -DeslJSON_TESTDRIVE ./esl_json.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_histogram_utest -I. -I. -L. -DeslHISTOGRAM_TESTDRIVE ./esl_histogram.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_huffman_utest -I. -I. -L. -DeslHUFFMAN_TESTDRIVE ./esl_huffman.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_keyhash_utest -I. -I. -L. -DeslKEYHASH_TESTDRIVE ./esl_keyhash.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hmm_utest -I. -I. -L. -DeslHMM_TESTDRIVE ./esl_hmm.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hyperexp_utest -I. -I. -L. -DeslHYPEREXP_TESTDRIVE ./esl_hyperexp.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mem_utest -I. -I. -L. -DeslMEM_TESTDRIVE ./esl_mem.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_matrixops_utest -I. -I. -L. -DeslMATRIXOPS_TESTDRIVE ./esl_matrixops.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msacluster_utest -I. -I. -L. -DeslMSACLUSTER_TESTDRIVE ./esl_msacluster.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msa_utest -I. -I. -L. -DeslMSA_TESTDRIVE ./esl_msa.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_minimizer_utest -I. -I. -L. -DeslMINIMIZER_TESTDRIVE ./esl_minimizer.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mixdchlet_utest -I. -I. -L. -DeslMIXDCHLET_TESTDRIVE ./esl_mixdchlet.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_utest -I. -I. -L. -DeslMSAFILE_TESTDRIVE ./esl_msafile.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile2_utest -I. -I. -L. -DeslMSAFILE2_TESTDRIVE ./esl_msafile2.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_a2m_utest -I. -I. -L. -DeslMSAFILE_A2M_TESTDRIVE ./esl_msafile_a2m.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_afa_utest -I. -I. -L. -DeslMSAFILE_AFA_TESTDRIVE ./esl_msafile_afa.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_clustal_utest -I. -I. -L. -DeslMSAFILE_CLUSTAL_TESTDRIVE ./esl_msafile_clustal.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_phylip_utest -I. -I. -L. -DeslMSAFILE_PHYLIP_TESTDRIVE ./esl_msafile_phylip.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_psiblast_utest -I. -I. -L. -DeslMSAFILE_PSIBLAST_TESTDRIVE ./esl_msafile_psiblast.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_selex_utest -I. -I. -L. -DeslMSAFILE_SELEX_TESTDRIVE ./esl_msafile_selex.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_stockholm_utest -I. -I. -L. -DeslMSAFILE_STOCKHOLM_TESTDRIVE ./esl_msafile_stockholm.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msaweight_utest -I. -I. -L. -DeslMSAWEIGHT_TESTDRIVE ./esl_msaweight.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_normal_utest -I. -I. -L. -DeslNORMAL_TESTDRIVE ./esl_normal.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_quicksort_utest -I. -I. -L. -DeslQUICKSORT_TESTDRIVE ./esl_quicksort.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_random_utest -I. -I. -L. -DeslRANDOM_TESTDRIVE ./esl_random.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rand64_utest -I. -I. -L. -DeslRAND64_TESTDRIVE ./esl_rand64.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_randomseq_utest -I. -I. -L. -DeslRANDOMSEQ_TESTDRIVE ./esl_randomseq.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_red_black_utest -I. -I. -L. -DeslRED_BLACK_TESTDRIVE ./esl_red_black.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ratematrix_utest -I. -I. -L. -DeslRATEMATRIX_TESTDRIVE ./esl_ratematrix.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_recorder_utest -I. -I. -L. -DeslRECORDER_TESTDRIVE ./esl_recorder.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rootfinder_utest -I. -I. -L. -DeslROOTFINDER_TESTDRIVE ./esl_rootfinder.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_regexp_utest -I. -I. -L. -DeslREGEXP_TESTDRIVE ./esl_regexp.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sq_utest -I. -I. -L. -DeslSQ_TESTDRIVE ./esl_sq.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_scorematrix_utest -I. -I. -L. -DeslSCOREMATRIX_TESTDRIVE ./esl_scorematrix.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sqio_utest -I. -I. -L. -DeslSQIO_TESTDRIVE ./esl_sqio.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ssi_utest -I. -I. -L. -DeslSSI_TESTDRIVE ./esl_ssi.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stack_utest -I. -I. -L. -DeslSTACK_TESTDRIVE ./esl_stack.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stats_utest -I. -I. -L. -DeslSTATS_TESTDRIVE ./esl_stats.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stretchexp_utest -I. -I. -L. -DeslSTRETCHEXP_TESTDRIVE ./esl_stretchexp.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_tree_utest -I. -I. -L. -DeslTREE_TESTDRIVE ./esl_tree.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_varint_utest -I. -I. -L. -DeslVARINT_TESTDRIVE ./esl_varint.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vectorops_utest -I. -I. -L. -DeslVECTOROPS_TESTDRIVE ./esl_vectorops.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_weibull_utest -I. -I. -L. -DeslWEIBULL_TESTDRIVE ./esl_weibull.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_wuss_utest -I. -I. -L. -DeslWUSS_TESTDRIVE ./esl_wuss.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sse_utest -I. -I. -L. -DeslSSE_TESTDRIVE ./esl_sse.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx_utest -I. -I. -L. -DeslAVX_TESTDRIVE ./esl_avx.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx512_utest -I. -I. -L. -DeslAVX512_TESTDRIVE ./esl_avx512.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_neon_utest -I. -I. -L. -DeslNEON_TESTDRIVE ./esl_neon.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vmx_utest -I. -I. -L. -DeslVMX_TESTDRIVE ./esl_vmx.c -leasel -lm make -C miniapps tests make[4]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel/miniapps' make[4]: Nothing to be done for 'tests'. make[4]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel/miniapps' make[3]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel' make -C src tests make[3]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src' make -C impl_sse libhmmer-impl.stamp gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o itest_brute.o -c itest_brute.c make[4]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src/impl_sse' make[4]: 'libhmmer-impl.stamp' is up to date. make[4]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src/impl_sse' {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_TESTDRIVE -o generic_fwdback_utest ./generic_fwdback.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7BUILD_TESTDRIVE -o build_utest ./build.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_VITERBI_TESTDRIVE -o generic_viterbi_utest ./generic_viterbi.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_CHK_TESTDRIVE -o generic_fwdback_chk_utest ./generic_fwdback_chk.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_STOTRACE_TESTDRIVE -o generic_stotrace_utest ./generic_stotrace.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7MODELCONFIG_TESTDRIVE -o modelconfig_utest ./modelconfig.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_MSV_TESTDRIVE -o generic_msv_utest ./generic_msv.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7SEQMODEL_TESTDRIVE -o seqmodel_utest ./seqmodel.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7LOGSUM_TESTDRIVE -o logsum_utest ./logsum.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMER_TESTDRIVE -o hmmer_utest ./hmmer.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7BG_TESTDRIVE -o p7_bg_utest ./p7_bg.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7ALIDISPLAY_TESTDRIVE -o p7_alidisplay_utest ./p7_alidisplay.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7DOMAIN_TESTDRIVE -o p7_domain_utest ./p7_domain.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GMX_TESTDRIVE -o p7_gmx_utest ./p7_gmx.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMFILE_TESTDRIVE -o p7_hmmfile_utest ./p7_hmmfile.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GMXCHK_TESTDRIVE -o p7_gmxchk_utest ./p7_gmxchk.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATS_TESTDRIVE -o p7_hmmd_search_stats_utest ./p7_hmmd_search_stats.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMM_TESTDRIVE -o p7_hmm_utest ./p7_hmm.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HIT_TESTDRIVE -o p7_hit_utest ./p7_hit.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7TRACE_TESTDRIVE -o p7_trace_utest ./p7_trace.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7TOPHITS_TESTDRIVE -o p7_tophits_utest ./p7_tophits.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7PROFILE_TESTDRIVE -o p7_profile_utest ./p7_profile.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATUS_TESTDRIVE -o hmmd_search_status_utest ./hmmd_search_status.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7SCOREDATA_TESTDRIVE -o p7_scoredata_utest ./p7_scoredata.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMPGMD2MSA_TESTDRIVE -o hmmpgmd2msa_utest ./hmmpgmd2msa.c -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o itest_brute itest_brute.o -lhmmer -leasel -ldivsufsort -lm make -C impl_sse tests make[4]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7FWDBACK_TESTDRIVE -o fwdback_utest ./fwdback.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7VITFILTER_TESTDRIVE -o vitfilter_utest ./vitfilter.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7OPTACC_TESTDRIVE -o optacc_utest ./optacc.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7MSVFILTER_TESTDRIVE -o msvfilter_utest ./msvfilter.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7DECODING_TESTDRIVE -o decoding_utest ./decoding.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7STOTRACE_TESTDRIVE -o stotrace_utest ./stotrace.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7IO_TESTDRIVE -o io_utest ./io.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/hmmer-PIahSR/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7NULL2_TESTDRIVE -o null2_utest ./null2.c -lhmmer -leasel -lm make[4]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src/impl_sse' make[3]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src' make -C easel check make[3]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel' make -C miniapps check make[4]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel/miniapps' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel/miniapps' make -C testsuite check make[4]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel/testsuite' Running Easel test suite... exercise 1 [ easel-utest] ... ok. exercise 2 [ alloc-utest] ... ok. exercise 3 [ alphabet-utest] ... ok. exercise 4 [ avx-utest] ... ok. exercise 5 [ avx512-utest] ... ok. exercise 6 [ bitfield-utest] ... ok. exercise 7 [ buffer-utest] ... ok. exercise 8 [ cluster-utest] ... ok. exercise 9 [ cpu-utest] ... ok. exercise 10 [ dirichlet-utest] ... ok. exercise 11 [ distance-utest] ... ok. exercise 12 [ dmatrix-utest] ... ok. exercise 13 [ dsqdata-utest] ... ok. exercise 14 [ exponential-utest] ... ok. exercise 15 [ fileparser-utest] ... ok. exercise 16 [ gamma-utest] ... ok. exercise 17 [ gencode-utest] ... ok. exercise 18 [ getopts-utest] ... ok. exercise 19 [ graph-utest] ... ok. exercise 20 [ gumbel-utest] ... ok. exercise 21 [ heap-utest] ... ok. exercise 22 [ histogram-utest] ... ok. exercise 23 [ huffman-utest] ... ok. exercise 24 [ hyperexp-utest] ... ok. exercise 25 [ json-utest] ... ok. exercise 26 [ keyhash-utest] ... ok. exercise 27 [ matrixops-utest] ... ok. exercise 28 [ mem-utest] ... ok. exercise 29 [ minimizer-utest] ... ok. exercise 30 [ mixdchlet-utest] ... ok. exercise 31 [ msa-utest] ... ok. exercise 32 [ msacluster-utest] ... ok. exercise 33 [ msafile] ... ok. exercise 34 [ msafile2] ... ok. exercise 35 [ msafile-a2m] ... ok. exercise 36 [ msafile-afa] ... ok. exercise 37 [ msafile-clustal] ... ok. exercise 38 [ msafile-phylip] ... ok. exercise 39 [ msafile-psiblast] ... ok. exercise 40 [ msafile-selex] ... ok. exercise 41 [ msafile-stockholm] ... ok. exercise 42 [ msaweight-utest] ... ok. exercise 43 [ neon-utest] ... ok. exercise 44 [ normal-utest] ... ok. exercise 45 [ quicksort-utest] ... ok. exercise 46 [ random-utest] ... ok. exercise 47 [ rand64-utest] ... ok. exercise 48 [ randomseq-utest] ... ok. exercise 49 [ ratematrix-utest] ... ok. exercise 50 [ recorder-utest] ... ok. exercise 51 [ red_black-utest] ... ok. exercise 52 [ regexp-utest] ... ok. exercise 53 [ rootfinder-utest] ... ok. exercise 54 [ scorematrix-utest] ... ok. exercise 55 [ sq-utest] ... ok. exercise 56 [ sqio-utest] ... ok. exercise 57 [ sse-utest] ... ok. exercise 58 [ ssi-utest] ... ok. exercise 59 [ stack-utest] ... ok. exercise 60 [ stats-utest] ... ok. exercise 61 [ stretchexp-utest] ... ok. exercise 62 [ tree-utest] ... ok. exercise 63 [ varint-utest] ... ok. exercise 64 [ vectorops-utest] ... ok. exercise 65 [ vmx-utest] ... ok. exercise 66 [ weibull-utest] ... ok. exercise 67 [ wuss-utest] ... ok. exercise 68 [ e2] ... ok. exercise 69 [ degen-residues] ... ok. exercise 70 [ ncbi-indices] ... ok. exercise 71 [ blank-gf] ... ok. exercise 72 [ esl-translate] ... ok. exercise 73 [ esl-afetch] ... ok. exercise 74 [ esl-alimanip] ... ok. exercise 75 [ esl-alimap] ... ok. exercise 76 [ esl-alimask] ... ok. exercise 77 [ esl-alimerge] ... ok. exercise 78 [ esl-alistat] ... ok. exercise 79 [ esl-compalign] ... ok. exercise 80 [ esl-construct] ... ok. exercise 81 [ esl-mask] ... ok. exercise 82 [ esl-seqrange] ... ok. exercise 83 [ esl-shuffle] ... ok. exercise 84 [ esl-ssdraw] ... ok. All 84 exercises at level <= 2 passed. System information: Sat Oct 9 01:02:39 UTC 2021 Linux f36f2cbc4219 5.10.0-8-amd64 #1 SMP Debian 5.10.46-4 (2021-08-03) x86_64 GNU/Linux make[4]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel/testsuite' make[3]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel' make -C testsuite check make[3]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/testsuite' Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ hmmd_search_status] ... ok. exercise 8 [ logsum] ... ok. exercise 9 [ modelconfig] ... ok. exercise 10 [ seqmodel] ... ok. exercise 11 [ p7_alidisplay] ... ok. exercise 12 [ p7_bg] ... ok. exercise 13 [ p7_domain] ... ok. exercise 14 [ p7_gmx] ... ok. exercise 15 [ p7_hit] ... ok. exercise 16 [ p7_hmm] ... ok. exercise 17 [ p7_hmmfile] ... ok. exercise 18 [ p7_hmmd_search_stats] ... ok. exercise 19 [ p7_profile] ... ok. exercise 20 [ p7_tophits] ... ok. exercise 21 [ p7_trace] ... ok. exercise 22 [ p7_scoredata] ... ok. exercise 23 [ decoding] ... ok. exercise 24 [ fwdback] ... ok. exercise 25 [ io] ... ok. exercise 26 [ msvfilter] ... ok. exercise 27 [ null2] ... ok. exercise 28 [ optacc] ... ok. exercise 29 [ stotrace] ... ok. exercise 30 [ vitfilter] ... ok. exercise 31 [ hmmpgmd2msa] ... ok. exercise 32 [ hmmalign] ... ok. exercise 33 [ hmmalign/-h] ... ok. exercise 34 [ hmmalign/-o] ... ok. exercise 35 [ hmmalign/--mapali] ... ok. exercise 36 [ hmmalign/--trim] ... ok. exercise 37 [ hmmalign/--amino] ... ok. exercise 38 [ hmmalign/--informat] ... ok. exercise 39 [ hmmalign/--outformat] ... ok. exercise 40 [ hmmbuild] ... ok. exercise 41 [ build/-h] ... ok. exercise 42 [ build/-n] ... ok. exercise 43 [ build/-o] ... ok. exercise 44 [ build/-O] ... ok. exercise 45 [ build/--amino] ... ok. exercise 46 [ build/--dna] ... ok. exercise 47 [ build/--rna] ... ok. exercise 48 [ build/--fast] ... ok. exercise 49 [ build/--hand] ... ok. exercise 50 [ build/--symfrac] ... ok. exercise 51 [ build/--fragthresh] ... ok. exercise 52 [ build/--wpb] ... ok. exercise 53 [ build/--wgsc] ... ok. exercise 54 [ build/--wblosum] ... ok. exercise 55 [ build/--wnone] ... ok. exercise 56 [ build/--wid] ... ok. exercise 57 [ build/--eent] ... ok. exercise 58 [ build/--eclust] ... ok. exercise 59 [ build/--enone] ... ok. exercise 60 [ build/--eset] ... ok. exercise 61 [ build/--ere] ... ok. exercise 62 [ build/--esigma] ... ok. exercise 63 [ build/--eid] ... ok. exercise 64 [ build/--pnone] ... ok. exercise 65 [ build/--plaplace] ... ok. exercise 66 [ build/--EmL] ... ok. exercise 67 [ build/--EmN] ... ok. exercise 68 [ build/--EvL] ... ok. exercise 69 [ build/--EvN] ... ok. exercise 70 [ build/--EfL] ... ok. exercise 71 [ build/--EfN] ... ok. exercise 72 [ build/--Eft] ... ok. exercise 73 [ build/--informat] ... ok. exercise 74 [ build/--seed] ... ok. exercise 75 [ search] ... ok. exercise 76 [ search/-h] ... ok. exercise 77 [ search/-o] ... ok. exercise 78 [ search/-A] ... ok. exercise 79 [ search/--tblout] ... ok. exercise 80 [ search/--domtblout] ... ok. exercise 81 [ search/--pfamtblout] ... ok. exercise 82 [ search/--acc] ... ok. exercise 83 [ search/--noali] ... ok. exercise 84 [ search/--notextw] ... ok. exercise 85 [ search/--textw] ... ok. exercise 86 [ search/-E] ... ok. exercise 87 [ search/-T] ... ok. exercise 88 [ search/--domE] ... ok. exercise 89 [ search/--domT] ... ok. exercise 90 [ search/--incE] ... ok. exercise 91 [ search/--incT] ... ok. exercise 92 [ search/--incdomE] ... ok. exercise 93 [ search/--incdomT] ... ok. exercise 94 [ search/--cut_ga] ... ok. exercise 95 [ search/--cut_nc] ... ok. exercise 96 [ search/--cut_tc] ... ok. exercise 97 [ search/--max] ... ok. exercise 98 [ search/--F1] ... ok. exercise 99 [ search/--F2] ... ok. exercise 100 [ search/--F3] ... ok. exercise 101 [ search/--nobias] ... ok. exercise 102 [ search/--nonull2] ... ok. exercise 103 [ search/-Z] ... ok. exercise 104 [ search/--domZ] ... ok. exercise 105 [ search/--seed] ... ok. exercise 106 [ search/--tformat] ... ok. exercise 107 [ hmmscan] ... ok. exercise 108 [ scan/-h] ... ok. exercise 109 [ scan/-o] ... ok. exercise 110 [ scan/--tblout] ... ok. exercise 111 [ scan/--domtblout] ... ok. exercise 112 [ scan/--pfamtblout] ... ok. exercise 113 [ scan/--acc] ... ok. exercise 114 [ scan/--noali] ... ok. exercise 115 [ scan/--notextw] ... ok. exercise 116 [ scan/--textw] ... ok. exercise 117 [ scan/-E] ... ok. exercise 118 [ scan/-T] ... ok. exercise 119 [ scan/--domE] ... ok. exercise 120 [ scan/--domT] ... ok. exercise 121 [ scan/--incE] ... ok. exercise 122 [ scan/--incT] ... ok. exercise 123 [ scan/--incdomE] ... ok. exercise 124 [ scan/--incdomT] ... ok. exercise 125 [ scan/--incdomT] ... ok. exercise 126 [ scan/--cut_ga] ... ok. exercise 127 [ scan/--cut_nc] ... ok. exercise 128 [ scan/--cut_tc] ... ok. exercise 129 [ scan/--max] ... ok. exercise 130 [ scan/--F1] ... ok. exercise 131 [ scan/--F2] ... ok. exercise 132 [ scan/--F3] ... ok. exercise 133 [ scan/--nobias] ... ok. exercise 134 [ scan/--nonull2] ... ok. exercise 135 [ scan/-Z] ... ok. exercise 136 [ scan/--domZ] ... ok. exercise 137 [ scan/--seed] ... ok. exercise 138 [ scan/--qformat] ... ok. exercise 139 [ scan/--cpu] ... ok. exercise 140 [ jackhmmer] ... ok. exercise 141 [ j/-h] ... ok. exercise 142 [ j/-N] ... ok. exercise 143 [ j/-o] ... ok. exercise 144 [ j/-A] ... ok. exercise 145 [ j/--tblout] ... ok. exercise 146 [ j/--domtblout] ... ok. exercise 147 [ j/--chkhmm] ... ok. exercise 148 [ j/--chkali] ... ok. exercise 149 [ j/--acc] ... ok. exercise 150 [ j/--noali] ... ok. exercise 151 [ j/--notextw] ... ok. exercise 152 [ j/--textw] ... ok. exercise 153 [ j/--popen] ... ok. exercise 154 [ j/--pextend] ... ok. exercise 155 [ j/--mxfile] ... ok. exercise 156 [ j/-E] ... ok. exercise 157 [ j/-T] ... ok. exercise 158 [ j/--domE] ... ok. exercise 159 [ j/--domT] ... ok. exercise 160 [ j/--incE] ... ok. exercise 161 [ j/--incT] ... ok. exercise 162 [ j/--incdomE] ... ok. exercise 163 [ j/--incdomT] ... ok. exercise 164 [ j/--max] ... ok. exercise 165 [ j/--F1] ... ok. exercise 166 [ j/--F2] ... ok. exercise 167 [ j/--F3] ... ok. exercise 168 [ j/--nobias] ... ok. exercise 169 [ j/--EmL] ... ok. exercise 170 [ j/--EmN] ... ok. exercise 171 [ j/--EvL] ... ok. exercise 172 [ j/--EvN] ... ok. exercise 173 [ j/--EfL] ... ok. exercise 174 [ j/--EfN] ... ok. exercise 175 [ j/--Eft] ... ok. exercise 176 [ j/--nonull2] ... ok. exercise 177 [ j/-Z] ... ok. exercise 178 [ j/--domZ] ... ok. exercise 179 [ j/--seed] ... ok. exercise 180 [ j/--qformat] ... ok. exercise 181 [ j/--tformat] ... ok. exercise 182 [ phmmer] ... ok. exercise 183 [ phmmer/-h] ... ok. exercise 184 [ phmmer/-o] ... ok. exercise 185 [ phmmer/-A] ... ok. exercise 186 [ phmmer/--tblout] ... ok. exercise 187 [ phmmer/--domtblout] ... ok. exercise 188 [ phmmer/--pfamtblout] ... ok. exercise 189 [ phmmer/--acc] ... ok. exercise 190 [ phmmer/--noali] ... ok. exercise 191 [ phmmer/--notextw] ... ok. exercise 192 [ phmmer/--textw] ... ok. exercise 193 [ phmmer/--popen] ... ok. exercise 194 [ phmmer/--pextend] ... ok. exercise 195 [ phmmer/--mxfile] ... ok. exercise 196 [ phmmer/-E] ... ok. exercise 197 [ phmmer/-T] ... ok. exercise 198 [ phmmer/--domE] ... ok. exercise 199 [ phmmer/--domT] ... ok. exercise 200 [ phmmer/--incE] ... ok. exercise 201 [ phmmer/--incT] ... ok. exercise 202 [ phmmer/--incdomE] ... ok. exercise 203 [ phmmer/--incdomT] ... ok. exercise 204 [ phmmer/--max] ... ok. exercise 205 [ phmmer/--F1] ... ok. exercise 206 [ phmmer/--F2] ... ok. exercise 207 [ phmmer/--F3] ... ok. exercise 208 [ phmmer/--nobias] ... ok. exercise 209 [ phmmer/--EmL] ... ok. exercise 210 [ phmmer/--EmN] ... ok. exercise 211 [ phmmer/--EvL] ... ok. exercise 212 [ phmmer/--EvN] ... ok. exercise 213 [ phmmer/--EfL] ... ok. exercise 214 [ phmmer/--EfN] ... ok. exercise 215 [ phmmer/--Eft] ... ok. exercise 216 [ phmmer/--nonull2] ... ok. exercise 217 [ phmmer/-Z] ... ok. exercise 218 [ phmmer/--domZ] ... ok. exercise 219 [ phmmer/--seed] ... ok. exercise 220 [ phmmer/--qformat] ... ok. exercise 221 [ phmmer/--tformat] ... ok. exercise 222 [ nhmmer] ... ok. exercise 223 [ nhmmer/-h] ... ok. exercise 224 [ nhmmer/-o] ... ok. exercise 225 [ nhmmer/-A] ... ok. exercise 226 [ nhmmer/--tblout] ... ok. exercise 227 [ nhmmer/--dfamtblout] ... ok. exercise 228 [ nhmmer/--acc] ... ok. exercise 229 [ nhmmer/--noali] ... ok. exercise 230 [ nhmmer/--notextw] ... ok. exercise 231 [ nhmmer/--textw] ... ok. exercise 232 [ nhmmer/-E] ... ok. exercise 233 [ nhmmer/-T] ... ok. exercise 234 [ nhmmer/--incE] ... ok. exercise 235 [ nhmmer/--incT] ... ok. exercise 236 [ nhmmer/--max] ... ok. exercise 237 [ nhmmer/--F1] ... ok. exercise 238 [ nhmmer/--F2] ... ok. exercise 239 [ nhmmer/--F3] ... ok. exercise 240 [ nhmmer/--nobias] ... ok. exercise 241 [ nhmmer/--nonull2] ... ok. exercise 242 [ nhmmer/-Z] ... ok. exercise 243 [ nhmmer/--seed] ... ok. exercise 244 [ nhmmscan] ... ok. exercise 245 [ nhmmscan/-h] ... ok. exercise 246 [ nhmmscan/-o] ... ok. exercise 247 [ nhmmscan/--tblout] ... ok. exercise 248 [nhmmscan/--dfamtblout] ... ok. exercise 249 [ nhmmscan/--acc] ... ok. exercise 250 [ nhmmscan/--noali] ... ok. exercise 251 [ nhmmscan/--notextw] ... ok. exercise 252 [ nhmmscan/--textw] ... ok. exercise 253 [ nhmmscan/-E] ... ok. exercise 254 [ nhmmscan/-T] ... ok. exercise 255 [ nhmmscan/--incE] ... ok. exercise 256 [ nhmmscan/--incT] ... ok. exercise 257 [ nhmmscan/--max] ... ok. exercise 258 [ nhmmscan/--F1] ... ok. exercise 259 [ nhmmscan/--F2] ... ok. exercise 260 [ nhmmscan/--F3] ... ok. exercise 261 [ nhmmscan/--nobias] ... ok. exercise 262 [ nhmmscan/--nonull2] ... ok. exercise 263 [ nhmmscan/-Z] ... ok. exercise 264 [ nhmmscan/--seed] ... ok. exercise 265 [ hmmemit] ... ok. exercise 266 [ hmmemit/-h] ... ok. exercise 267 [ hmmemit/-c] ... ok. exercise 268 [ hmmemit/-o] ... ok. exercise 269 [ hmmemit/-p] ... ok. exercise 270 [ hmmemit/-N] ... ok. exercise 271 [ hmmemit/-L] ... ok. exercise 272 [ hmmemit/--local] ... ok. exercise 273 [ hmmemit/--unilocal] ... ok. exercise 274 [ hmmemit/--glocal] ... ok. exercise 275 [ hmmemit/--uniglocal] ... ok. exercise 276 [ hmmfetch] ... ok. exercise 277 [ hmmstat] ... ok. exercise 278 [ hmmlogo] ... ok. exercise 279 [ hmmconvert] ... ok. exercise 280 [ hmmsim] ... ok. exercise 281 [ hmmbuild_variation] ... ok. exercise 282 [ hmmscan_variation] ... ok. exercise 283 [ hmmsearch_variation] ... ok. exercise 284 [ phmmer_variation] ... ok. exercise 285 [ mapali] ... ok. exercise 286 [ fragments] ... ok. exercise 287 [ nonresidues] ... ok. exercise 288 [ opt-annotation] ... ok. exercise 289 [ dup-names] ... ok. exercise 290 [ mapali-again] ... ok. exercise 291 [ delete-corruption] ... ok. exercise 292 [ msa-integrity] ... ok. exercise 293 [ hmmemit-consensus] ... ok. exercise 294 [ hmmconvert] ... ok. exercise 295 [ stdin_pipes] ... ok. exercise 296 [ nhmmer_generic] ... ok. exercise 297 [ hmmpgmd_ga] ... ok. exercise 298 [ rewind] ... ok. exercise 299 [ hmmpgmd_shard_ga] ... ok. exercise 300 [ bad-fasta] ... ok. exercise 301 [ brute-itest] ... ok. exercise 302 [ hmmpress-itest] ... ok. exercise 303 [ h39] ... ok. exercise 304 [ h45] ... ok. exercise 305 [ h50] ... ok. exercise 306 [ h82] ... ok. exercise 307 [ iss159] ... ok. All 307 exercises at level <= 2 passed. System information: Sat Oct 9 01:03:13 UTC 2021 Linux f36f2cbc4219 5.10.0-8-amd64 #1 SMP Debian 5.10.46-4 (2021-08-03) x86_64 GNU/Linux make[3]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/testsuite' make[2]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' if tail -n 6 debian/test_log | head -n 1 | grep -q FAILED ; then false ; fi make[1]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -i debian/rules override_dh_auto_install make[1]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' dh_auto_install make -j4 install DESTDIR=/build/hmmer-PIahSR/hmmer-3.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' SUBDIR easel make[3]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel' SUBDIR miniapps make[3]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/easel' SUBDIR src make[3]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src' SUBDIR impl_sse make[3]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src' SUBDIR profmark /usr/bin/install -c -d /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/tmp/usr/bin /usr/bin/install -c -d /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/tmp/usr/share/man/man1 make -C src install make[3]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src' for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \ /usr/bin/install -c -m 0755 $file /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/tmp/usr/bin/ ;\ done make[3]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/src' make -C documentation install make[3]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/documentation' make -C man install make[4]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/documentation/man' for file in hmmer hmmalign hmmbuild hmmc2 hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \ /usr/bin/install -c -m 0664 $file.man /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/tmp/usr/share/man/man1/${file}.1 ;\ done make[4]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/documentation/man' make[3]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg/documentation' make[2]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' mkdir -p /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer/usr/lib/x86_64-linux-gnu/hmmer/ cp src/hmmc2 /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer/usr/lib/x86_64-linux-gnu/hmmer/ make[1]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' dh_install -i dh_installdocs -i dh_installchangelogs -i debian/rules override_dh_installexamples make[1]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' dh_installexamples mkdir -p /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl find src/ -maxdepth 1 -name "*_utest" -exec cp \{\} /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/ \; find src/impl_sse -name "*_utest" -exec cp \{\} /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl \; cp src/itest_brute /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp src/hmmpress.itest.pl /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp -aR testsuite /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find easel -name "*.o" -delete cp -aR easel /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples cp -aR tutorial /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name 'Makefile' | xargs sed -i "s^/build/hmmer-PIahSR/hmmer-3.3.2+dfsg^.^g" find /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "esltmp*" -delete make[1]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' dh_perl -i dh_link -i dh_strip_nondeterminism -i debian/rules override_dh_compress make[1]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' dh_compress -Xtutorial/ make[1]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' debian/rules override_dh_fixperms make[1]: Entering directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' dh_fixperms find debian -name .dropbox.attr -delete find debian -name "*.fa" -executable -exec chmod -x \{\} \; find /build/hmmer-PIahSR/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "*.man" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/hmmer-PIahSR/hmmer-3.3.2+dfsg' dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'hmmer-doc' in '../hmmer-doc_3.3.2+dfsg-1_all.deb'. dpkg-deb: building package 'hmmer-examples' in '../hmmer-examples_3.3.2+dfsg-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../hmmer_3.3.2+dfsg-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-source: info: using options from hmmer-3.3.2+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/hmmer-PIahSR /tmp/hmmer-3.3.2+dfsg-17ankg_tq I: cleaning package lists and apt cache... W: deleting files in /tmp: esl-hmmpgmd-test.lock I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.o5rogfebGC... I: success in 2541.2376 seconds md5: hmmer-doc_3.3.2+dfsg-1_all.deb: OK md5: Value of 'md5' differs for hmmer-examples_3.3.2+dfsg-1_all.deb md5: Size differs for hmmer-examples_3.3.2+dfsg-1_all.deb sha1: hmmer-doc_3.3.2+dfsg-1_all.deb: OK sha1: Value of 'sha1' differs for hmmer-examples_3.3.2+dfsg-1_all.deb sha1: Size differs for hmmer-examples_3.3.2+dfsg-1_all.deb sha256: hmmer-doc_3.3.2+dfsg-1_all.deb: OK sha256: Value of 'sha256' differs for hmmer-examples_3.3.2+dfsg-1_all.deb sha256: Size differs for hmmer-examples_3.3.2+dfsg-1_all.deb Checksums: FAIL diffoscope run passed