Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/h/hinge/hinge_0.5.0-6+b2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/hinge-0.5.0-6+b2fqwahr5c/hinge_0.5.0-6+b2_amd64.buildinfo Get source package info: hinge=0.5.0-6 Source URL: http://snapshot.notset.fr/mr/package/hinge/0.5.0-6/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-1 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-1 binutils=2.35.1-6 binutils-common=2.35.1-6 binutils-x86-64-linux-gnu=2.35.1-6 bsdextrautils=2.36.1-4 bsdutils=1:2.36.1-4 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 cmake=3.18.4-1+b1 cmake-data=3.18.4-1 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.1-3 daligner=1.0+git20200727.ed40ce5-3 dascrubber=1.1-2 dash=0.5.11+git20200708+dd9ef66-5 dazzdb=1.0+git20200727.d22ae58-1 debconf=1.5.74 debhelper=13.3.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.7.0+git20201010-2 fonts-lyx=2.3.6-1 g++=4:10.2.0-1 g++-10=10.2.1-3 gcc=4:10.2.0-1 gcc-10=10.2.1-3 gcc-10-base=10.2.1-3 gettext=0.21-3 gettext-base=0.21-3 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hdf5-helpers=1.10.6+repack-2 hostname=3.23 icu-devtools=67.1-5 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libaec-dev=1.0.4-1 libaec0=1.0.4-1 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libasan6=10.2.1-3 libatomic1=10.2.1-3 libattr1=1:2.4.48-6 libaudit-common=1:3.0-1 libaudit1=1:3.0-1 libbinutils=2.35.1-6 libblas3=3.9.0-3 libblkid1=2.36.1-4 libboost-dev=1.74.0.3 libboost-graph-dev=1.74.0.3 libboost-graph1.74-dev=1.74.0-6 libboost-graph1.74.0=1.74.0-6 libboost-regex1.74-dev=1.74.0-6 libboost-regex1.74.0=1.74.0-6 libboost-serialization1.74-dev=1.74.0-6 libboost-serialization1.74.0=1.74.0-6 libboost-test1.74-dev=1.74.0-6 libboost-test1.74.0=1.74.0-6 libboost1.74-dev=1.74.0-6 libbrotli1=1.0.9-2+b2 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-6 libc-dev-bin=2.31-6 libc6=2.31-6 libc6-dev=2.31-6 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-3 libcmark-gfm-extensions0=0.29.0.gfm.0-6 libcmark-gfm0=0.29.0.gfm.0-6 libcom-err2=1.45.6-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-6 libctf0=2.35.1-6 libcurl3-gnutls=7.74.0-1 libcurl4=7.74.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.3.1 libdeflate0=1.6-1 libdouble-conversion3=3.1.5-6.1 libdpkg-perl=1.20.5 libelf1=0.182-2 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libfmt-dev=7.1.3+ds1-4 libfmt7=7.1.3+ds1-4 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.2.1-3 libgcc-s1=10.2.1-3 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran5=10.2.1-3 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-3 libgomp1=10.2.1-3 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libhdf5-103-1=1.10.6+repack-2 libhdf5-cpp-103-1=1.10.6+repack-2 libhdf5-dev=1.10.6+repack-2 libhdf5-fortran-102=1.10.6+repack-2 libhdf5-hl-100=1.10.6+repack-2 libhdf5-hl-cpp-100=1.10.6+repack-2 libhdf5-hl-fortran-100=1.10.6+repack-2 libhogweed6=3.6-2 libhts3=1.11-3 libicu-dev=67.1-5 libicu67=67.1-5 libidn2-0=2.3.0-4 libimagequant0=2.12.2-1.1 libisl23=0.23-1 libitm1=10.2.1-3 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.0.5-2 libjpeg62-turbo=1:2.0.5-2 libjpeg62-turbo-dev=1:2.0.5-2 libjs-jquery=3.5.1+dfsg+~3.5.5-4 libjs-jquery-ui=1.12.1+dfsg-7 libjsoncpp24=1.9.4-4 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.56+dfsg-1 liblsan0=10.2.1-3 liblz4-1=1.9.3-1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-4 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libprocps8=2:3.3.16-5 libpsl5=0.21.0-1.1 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-1 libpython3.9-stdlib=3.9.1-1 libquadmath0=10.2.1-3 libreadline8=8.1-1 librhash0=1.4.0-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsigsegv2=2.12-3 libsmartcols1=2.36.1-4 libspdlog-dev=1:1.8.1+ds-2.1 libspdlog1=1:1.8.1+ds-2.1 libsqlite3-0=3.34.0-1 libssh2-1=1.9.0-2 libssl1.1=1.1.1i-1 libstdc++-10-dev=10.2.1-3 libstdc++6=10.2.1-3 libsub-override-perl=0.09-2 libsystemd0=247.2-3 libsz2=1.0.4-1 libtasn1-6=4.16.0-2 libtiff5=4.2.0-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.1-3 libubsan1=10.2.1-3 libuchardet0=0.0.7-1 libudev1=247.2-3 libunistring2=0.9.10-4 libuuid1=2.36.1-4 libuv1=1.40.0-1 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libxau6=1:1.0.8-1+b2 libxcb1=1.14-2.1 libxdmcp6=1:1.1.2-3 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.9.15-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.1.0 mime-support=3.66 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 openssl=1.1.1i-1 pandoc=2.9.2.1-1+b1 pandoc-data=2.9.2.1-1 patch=2.7.6-6 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 po-debconf=1.0.21+nmu1 procps=2:3.3.16-5 python-matplotlib-data=3.3.2-2 python3=3.9.1-1 python3-appdirs=1.4.4-1 python3-biopython=1.78+dfsg-4 python3-certifi=2020.6.20-1 python3-colorama=0.4.4-1 python3-colorlog=4.6.2-1 python3-colormap=1.0.3-1 python3-cycler=0.10.0-3 python3-dateutil=2.8.1-4 python3-decorator=4.4.2-2 python3-easydev=0.10.1+dfsg-1 python3-kiwisolver=1.3.1-1+b1 python3-matplotlib=3.3.2-2+b1 python3-minimal=3.9.1-1 python3-networkx=2.5+ds-2 python3-numpy=1:1.19.4-1+b1 python3-pbcore=1.7.1+git20200430.a127b1e+dfsg-1 python3-pexpect=4.6.0-4 python3-pil=8.0.1-1+b1 python3-pkg-resources=51.1.0-1 python3-ptyprocess=0.6.0-3 python3-pyparsing=2.4.7-1 python3-pysam=0.15.4+ds-3+b2 python3-reportlab=3.5.57-1 python3-reportlab-accel=3.5.57-1 python3-six=1.15.0-2 python3-ujson=4.0.1-1+b1 python3.9=3.9.1-1 python3.9-minimal=3.9.1-1 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 ttf-bitstream-vera=1.10-8.1 tzdata=2020e-1 util-linux=2.36.1-4 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210106T142920Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201230T203527Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d hinge=0.5.0-6 && mkdir -p /build/hinge-8sQKGX && dpkg-source --no-check -x /*.dsc /build/hinge-8sQKGX/hinge-0.5.0 && cd /build/hinge-8sQKGX/hinge-0.5.0 && { printf '%s' 'hinge (0.5.0-6+b2) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild against libspdlog1-fmt7 -- amd64 / i386 Build Daemon (x86-ubc-01) Sat, 02 Jan 2021 11:56:11 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/hinge-8sQKGX" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/hinge-8sQKGX/hinge-0.5.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609588571" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/hinge-8sQKGX /tmp/hinge-0.5.0-6+b2fqwahr5c bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.cc34_KshQ0 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.cc34_KshQ0 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1074 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4648 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-6) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210106T142920Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201230T203527Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.cc34_KshQ0 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable/main amd64 Packages [11.6 MB] Fetched 34.3 MB in 29s (1174 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.cc34_KshQ0 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d hinge=0.5.0-6 && mkdir -p /build/hinge-8sQKGX && dpkg-source --no-check -x /*.dsc /build/hinge-8sQKGX/hinge-0.5.0 && cd /build/hinge-8sQKGX/hinge-0.5.0 && { printf '%s' 'hinge (0.5.0-6+b2) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild against libspdlog1-fmt7 -- amd64 / i386 Build Daemon (x86-ubc-01) Sat, 02 Jan 2021 11:56:11 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/hinge-8sQKGX"' exec /tmp/mmdebstrap.cc34_KshQ0 Reading package lists... NOTICE: 'hinge' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/hinge.git Please use: git clone https://salsa.debian.org/med-team/hinge.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 499 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main hinge 0.5.0-6 (dsc) [2141 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main hinge 0.5.0-6 (tar) [477 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main hinge 0.5.0-6 (diff) [19.9 kB] Fetched 499 kB in 1s (890 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'hinge_0.5.0-6.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting hinge in /build/hinge-8sQKGX/hinge-0.5.0 dpkg-source: info: unpacking hinge_0.5.0.orig.tar.gz dpkg-source: info: unpacking hinge_0.5.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying external-spdlog.patch dpkg-source: info: applying libspdlog-14.0.patch dpkg-source: info: applying libspdlog-1:1.3.0 dpkg-source: info: applying 2to3.patch dpkg-source: info: applying spdlog-1.5.0.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/hinge-8sQKGX/hinge-0.5.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609588571" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.cc34_KshQ0 dpkg-buildpackage: info: source package hinge dpkg-buildpackage: info: source version 0.5.0-6+b2 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-ubc-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0") found components: graph -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu dh_auto_build -a cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/hinge-8sQKGX/hinge-0.5.0 -B/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/depend make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/depend make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/depend make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DB.dir/DependInfo.cmake --color= Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DB.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DB.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DB.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/depend.internal". Scanning dependencies of target man make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/build Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/depend.internal". Scanning dependencies of target ini make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' Scanning dependencies of target DW_banded Scanning dependencies of target DB make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/build make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 6%] Generating hinge.1 [ 6%] Building C object bin/lib/CMakeFiles/ini.dir/ini.c.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin && /usr/bin/pandoc --from markdown --to man -s /build/hinge-8sQKGX/hinge-0.5.0/src/hinge.1.md -o hinge.1 cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/ini.dir/ini.c.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/lib/ini.c [ 10%] Building C object bin/lib/CMakeFiles/DW_banded.dir/DW_banded.c.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DW_banded.dir/DW_banded.c.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/lib/DW_banded.c [ 13%] Building C object bin/lib/CMakeFiles/DB.dir/DB.c.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DB.dir/DB.c.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/lib/DB.c make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 13%] Built target man make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LA.dir/DependInfo.cmake --color= /build/hinge-8sQKGX/hinge-0.5.0/src/lib/DB.c: In function ‘Load_QVs’: /build/hinge-8sQKGX/hinge-0.5.0/src/lib/DB.c:916:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 916 | fscanf(istub,DB_NFILE,&nfiles); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/hinge-8sQKGX/hinge-0.5.0/src/lib/DB.c:920:13: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 920 | { fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/hinge-8sQKGX/hinge-0.5.0/src/lib/DB.c:925:13: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 925 | { fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LA.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LA.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LA.dir/depend.internal". Scanning dependencies of target LA make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 17%] Building C object bin/lib/CMakeFiles/LA.dir/align.c.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/LA.dir/align.c.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/lib/align.c [ 20%] Building CXX object bin/lib/CMakeFiles/ini.dir/INIReader.cpp.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/c++ -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/ini.dir/INIReader.cpp.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/lib/INIReader.cpp [ 24%] Linking C static library libDW_banded.a cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/DW_banded.dir/cmake_clean_target.cmake cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/DW_banded.dir/link.txt --verbose=1 /usr/bin/ar qc libDW_banded.a CMakeFiles/DW_banded.dir/DW_banded.c.o /usr/bin/ranlib libDW_banded.a make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 24%] Built target DW_banded make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/DependInfo.cmake --color= Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/depend.internal". Scanning dependencies of target PAF make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 27%] Building C object bin/lib/CMakeFiles/PAF.dir/paf.c.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/PAF.dir/paf.c.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/lib/paf.c [ 31%] Linking C static library libPAF.a cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/PAF.dir/cmake_clean_target.cmake cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/PAF.dir/link.txt --verbose=1 /usr/bin/ar qc libPAF.a CMakeFiles/PAF.dir/paf.c.o /usr/bin/ranlib libPAF.a make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 31%] Built target PAF make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/DependInfo.cmake --color= Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/depend.internal". Scanning dependencies of target kmer_lookup make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 34%] Building C object bin/lib/CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/lib/kmer_lookup.c /build/hinge-8sQKGX/hinge-0.5.0/src/lib/kmer_lookup.c: In function ‘find_best_aln_range’: /build/hinge-8sQKGX/hinge-0.5.0/src/lib/kmer_lookup.c:347:14: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 347 | q_coor = calloc( km_ptr->count, sizeof(seq_coor_t) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/hinge-8sQKGX/hinge-0.5.0/src/lib/kmer_lookup.c:56: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /build/hinge-8sQKGX/hinge-0.5.0/src/lib/kmer_lookup.c:348:14: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 348 | t_coor = calloc( km_ptr->count, sizeof(seq_coor_t) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/hinge-8sQKGX/hinge-0.5.0/src/lib/kmer_lookup.c:56: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ [ 37%] Linking C static library libkmer_lookup.a cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/kmer_lookup.dir/cmake_clean_target.cmake cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kmer_lookup.dir/link.txt --verbose=1 /usr/bin/ar qc libkmer_lookup.a CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o /usr/bin/ranlib libkmer_lookup.a make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 41%] Building C object bin/lib/CMakeFiles/DB.dir/QV.c.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DB.dir/QV.c.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/lib/QV.c [ 41%] Built target kmer_lookup make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/falcon.dir/DependInfo.cmake --color= Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/falcon.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/falcon.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/falcon.dir/depend.internal". Scanning dependencies of target falcon make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 44%] Building C object bin/lib/CMakeFiles/falcon.dir/falcon.c.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/falcon.dir/falcon.c.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/lib/falcon.c [ 48%] Linking CXX static library libini.a cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/ini.dir/cmake_clean_target.cmake cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/ini.dir/link.txt --verbose=1 /usr/bin/ar qc libini.a CMakeFiles/ini.dir/ini.c.o CMakeFiles/ini.dir/INIReader.cpp.o /usr/bin/ranlib libini.a make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 48%] Built target ini [ 51%] Linking C static library libfalcon.a cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/falcon.dir/cmake_clean_target.cmake cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/falcon.dir/link.txt --verbose=1 /usr/bin/ar qc libfalcon.a CMakeFiles/falcon.dir/falcon.c.o /usr/bin/ranlib libfalcon.a make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 51%] Built target falcon [ 55%] Linking C static library libDB.a cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/DB.dir/cmake_clean_target.cmake cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/DB.dir/link.txt --verbose=1 /usr/bin/ar qc libDB.a CMakeFiles/DB.dir/DB.c.o CMakeFiles/DB.dir/QV.c.o /usr/bin/ranlib libDB.a make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 55%] Built target DB [ 58%] Linking C static library libLA.a cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/LA.dir/cmake_clean_target.cmake cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/LA.dir/link.txt --verbose=1 /usr/bin/ar qc libLA.a CMakeFiles/LA.dir/align.c.o /usr/bin/ranlib libLA.a make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 58%] Built target LA make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LAInterface.dir/DependInfo.cmake --color= Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LAInterface.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LAInterface.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LAInterface.dir/depend.internal". Scanning dependencies of target LAInterface make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 62%] Building CXX object bin/lib/CMakeFiles/LAInterface.dir/LAInterface.cpp.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/c++ -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/LAInterface.dir/LAInterface.cpp.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/lib/LAInterface.cpp /build/hinge-8sQKGX/hinge-0.5.0/src/lib/LAInterface.cpp: In member function ‘void LAInterface::getOverlapw(std::vector&, int, int)’: /build/hinge-8sQKGX/hinge-0.5.0/src/lib/LAInterface.cpp:1666:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘int64’ {aka ‘long long int’} [-Wformat=] 1666 | printf("%d percent finished\n", j/(novl/100)); | ~^ ~~~~~~~~~~~~ | | | | int int64 {aka long long int} | %lld In file included from /usr/include/string.h:495, from /build/hinge-8sQKGX/hinge-0.5.0/src/lib/LAInterface.cpp:3: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘int get_id_from_string(const char*)’ at /build/hinge-8sQKGX/hinge-0.5.0/src/lib/LAInterface.cpp:4816:12: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin___strncpy_chk(char*, const char*, long unsigned int, long unsigned int)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/hinge-8sQKGX/hinge-0.5.0/src/lib/LAInterface.cpp: In function ‘int get_id_from_string(const char*)’: /build/hinge-8sQKGX/hinge-0.5.0/src/lib/LAInterface.cpp:4816:33: note: length computed here 4816 | strncpy(substr, sub1, strlen(sub1) - strlen(sub2)); | ~~~~~~^~~~~~ [ 65%] Linking CXX static library libLAInterface.a cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/LAInterface.dir/cmake_clean_target.cmake cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/LAInterface.dir/link.txt --verbose=1 /usr/bin/ar qc libLAInterface.a CMakeFiles/LAInterface.dir/LAInterface.cpp.o /usr/bin/ranlib libLAInterface.a make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 65%] Built target LAInterface make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/depend make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/depend make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/depend make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/filter /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/maximal /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/consensus /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/consensus /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/DependInfo.cmake --color= Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/depend.internal". Scanning dependencies of target consensus Scanning dependencies of target Reads_filter Scanning dependencies of target draft_assembly make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/build make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' Scanning dependencies of target get_maximal_reads make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/build make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/build make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 68%] Building CXX object bin/maximal/CMakeFiles/get_maximal_reads.dir/maximal.cpp.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/maximal/maximal.cpp [ 72%] Building CXX object bin/consensus/CMakeFiles/consensus.dir/consensus.cpp.o [ 75%] Building CXX object bin/consensus/CMakeFiles/draft_assembly.dir/draft.cpp.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/draft_assembly.dir/draft.cpp.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/consensus/draft.cpp [ 79%] Building CXX object bin/filter/CMakeFiles/Reads_filter.dir/filter.cpp.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/consensus.dir/consensus.cpp.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/consensus/consensus.cpp cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter && /usr/bin/c++ -DSPDLOG_FMT_EXTERNAL -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/Reads_filter.dir/filter.cpp.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/filter/filter.cpp [ 82%] Linking CXX executable consensus cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/consensus.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/consensus.dir/consensus.cpp.o -o consensus -lfmt ../lib/libLAInterface.a ../lib/libfalcon.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz ../lib/libkmer_lookup.a ../lib/libDW_banded.a make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 82%] Built target consensus make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/layout /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/DependInfo.cmake --color= Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/DependInfo.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/depend.internal". Dependee "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/depend.internal". Scanning dependencies of target hinging make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 86%] Building CXX object bin/layout/CMakeFiles/hinging.dir/hinging.cpp.o cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DSPDLOG_FMT_EXTERNAL -I/build/hinge-8sQKGX/hinge-0.5.0/src/include -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/hinging.dir/hinging.cpp.o -c /build/hinge-8sQKGX/hinge-0.5.0/src/layout/hinging.cpp [ 89%] Linking CXX executable get_maximal_reads cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal && /usr/bin/cmake -E cmake_link_script CMakeFiles/get_maximal_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -o get_maximal_reads -lfmt ../lib/libLAInterface.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 89%] Built target get_maximal_reads [ 93%] Linking CXX executable Reads_filter cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter && /usr/bin/cmake -E cmake_link_script CMakeFiles/Reads_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/Reads_filter.dir/filter.cpp.o -o Reads_filter -lfmt ../lib/libLAInterface.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 93%] Built target Reads_filter [ 96%] Linking CXX executable draft_assembly cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/draft_assembly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/draft_assembly.dir/draft.cpp.o -o draft_assembly -lfmt ../lib/libLAInterface.a ../lib/libini.a ../lib/libfalcon.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz ../lib/libkmer_lookup.a ../lib/libDW_banded.a make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 96%] Built target draft_assembly [100%] Linking CXX executable hinging cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinging.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hinge-8sQKGX/hinge-0.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hinging.dir/hinging.cpp.o -o hinging -lfmt ../lib/libLAInterface.a ../lib/libini.a /usr/lib/x86_64-linux-gnu/libboost_graph.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz /usr/lib/x86_64-linux-gnu/libboost_regex.a make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [100%] Built target hinging make[2]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/hinge-8sQKGX/hinge-0.5.0/debian/hinge AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/hinge-8sQKGX/hinge-0.5.0 -B/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/depend make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/depend make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/depend make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DB.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/build make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/DW_banded.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/CMakeFiles/man.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/ini.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/DB.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 17%] Built target DW_banded [ 17%] Built target ini [ 20%] Built target man make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/depend make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/depend make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LA.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/DependInfo.cmake --color= [ 31%] Built target DB make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/LA.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/kmer_lookup.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 37%] Built target LA make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/PAF.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 44%] Built target PAF make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/depend [ 51%] Built target kmer_lookup make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LAInterface.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/falcon.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/build make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/falcon.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/LAInterface.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 58%] Built target falcon [ 65%] Built target LAInterface make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/depend make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/depend make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/filter /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/maximal /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/DependInfo.cmake --color= make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/depend make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/consensus /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/consensus /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/build make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/build make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/maximal/CMakeFiles/get_maximal_reads.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/filter/CMakeFiles/Reads_filter.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/consensus/CMakeFiles/consensus.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/consensus/CMakeFiles/draft_assembly.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [ 72%] Built target Reads_filter make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/depend [ 79%] Built target consensus make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' cd /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hinge-8sQKGX/hinge-0.5.0 /build/hinge-8sQKGX/hinge-0.5.0/src/layout /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/DependInfo.cmake --color= [ 86%] Built target get_maximal_reads [ 93%] Built target draft_assembly make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/build make[3]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/layout/CMakeFiles/hinging.dir/build'. make[3]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' [100%] Built target hinging make[2]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/draw2_pileup.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/correct_head.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/condense_graph_create_gfa_compute_n50.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/pipeline_nctc.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/run_parse_alignment.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/compute_n50_from_draft.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/parse_qv.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_draft_path.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/pipeline_consensus.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/create_hgraph_nogt.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/draw2.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/parse_read.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/condense_graph_and_annotate.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/split_las.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/parse_alignment.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_NCTC_json.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/fasta_to_fastq.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/pipeline_consensus_norevcomp.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/pruning_and_clipping_nanopore.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/merge_hinges.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/draft_assembly.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/parse.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/condense_graph_with_gt.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/Visualise_graph.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/random_condensation.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/run_parse_read.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/pruning_and_clipping.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/parallel_draw.sh -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/longest_path.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/pileup.ipynb -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/add_groundtruth_json.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/draw2_pileup_w_repeat.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/draw_pileup_region_find_bridges.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_draft_path_norevcomp.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/run_mapping.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_draft_annotation.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/download_NCTC_pipeline.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/draft_assembly_not_perfect.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/repeat_annotate_reads.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_single_strand.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_consensus_gfa.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/draw_pileup_region.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/parallel_draw_large.sh -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/unitig.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/condense_graph_annotate_clip_ends.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/connected.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/interface_utils.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/add_groundtruth.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/run_mapping2.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/run_mapping3.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/create_bandage_file.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/draw2_pileup_region.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/clip_ends.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/create_hgraph.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/condense_graph.py -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/share/man/man1/hinge.1 -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/bin/hinge -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/Reads_filter -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/get_maximal_reads -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/draft_assembly -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/consensus -- Installing: /build/hinge-8sQKGX/hinge-0.5.0/debian/hinge/usr/lib/hinge/hinging make[1]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0/obj-x86_64-linux-gnu' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/build/hinge-8sQKGX/hinge-0.5.0' dh_installexamples # only install nominal.ini from the utils/ directory, but preserve # the directory structure (since demo scripts expect it) mkdir -p debian/hinge/usr/share/doc/hinge/examples/utils \ && cp utils/nominal.ini debian/hinge/usr/share/doc/hinge/examples/utils make[1]: Leaving directory '/build/hinge-8sQKGX/hinge-0.5.0' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'hinge-dbgsym' in '../hinge-dbgsym_0.5.0-6+b2_amd64.deb'. dpkg-deb: building package 'hinge' in '../hinge_0.5.0-6+b2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../hinge_0.5.0-6+b2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/hinge-8sQKGX /tmp/hinge-0.5.0-6+b2fqwahr5c I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.cc34_KshQ0... I: success in 801.8783 seconds md5: hinge-dbgsym_0.5.0-6+b2_amd64.deb: OK md5: hinge_0.5.0-6+b2_amd64.deb: OK sha1: hinge-dbgsym_0.5.0-6+b2_amd64.deb: OK sha1: hinge_0.5.0-6+b2_amd64.deb: OK sha256: hinge-dbgsym_0.5.0-6+b2_amd64.deb: OK sha256: hinge_0.5.0-6+b2_amd64.deb: OK Checksums: OK