Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/h/hhsuite/hhsuite_3.3.0+ds-6_amd64.buildinfo Use metasnap for getting required timestamps Cannot get timestamps from metasnap: 404 (Not Found) Use snapshot for getting required timestamps Get source package info: hhsuite=3.3.0+ds-6 Source URL: http://snapshot.notset.fr/mr/package/hhsuite/3.3.0+ds-6/srcfiles?fileinfo=1 Initialize APT cache Get binary package info: autoconf=2.71-2 Binary URL: http://snapshot.notset.fr/mr/binary/autoconf/2.71-2/binfiles?fileinfo=1 Get binary package info: automake=1:1.16.5-1.1 Binary URL: http://snapshot.notset.fr/mr/binary/automake/1:1.16.5-1.1/binfiles?fileinfo=1 Get binary package info: autopoint=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/autopoint/0.21-4/binfiles?fileinfo=1 Get binary package info: autotools-dev=20180224.1+nmu1 Binary URL: http://snapshot.notset.fr/mr/binary/autotools-dev/20180224.1+nmu1/binfiles?fileinfo=1 Get binary package info: base-files=12 Binary URL: http://snapshot.notset.fr/mr/binary/base-files/12/binfiles?fileinfo=1 Get binary package info: base-passwd=3.5.52 Binary URL: http://snapshot.notset.fr/mr/binary/base-passwd/3.5.52/binfiles?fileinfo=1 Get binary package info: bash=5.1-3.1 Binary URL: http://snapshot.notset.fr/mr/binary/bash/5.1-3.1/binfiles?fileinfo=1 Get binary package info: binutils=2.37-10 Binary URL: http://snapshot.notset.fr/mr/binary/binutils/2.37-10/binfiles?fileinfo=1 Get binary package info: binutils-common=2.37-10 Binary URL: http://snapshot.notset.fr/mr/binary/binutils-common/2.37-10/binfiles?fileinfo=1 Get binary package info: binutils-x86-64-linux-gnu=2.37-10 Binary URL: http://snapshot.notset.fr/mr/binary/binutils-x86-64-linux-gnu/2.37-10/binfiles?fileinfo=1 Get binary package info: bsdextrautils=2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/bsdextrautils/2.37.2-4/binfiles?fileinfo=1 Get binary package info: bsdutils=1:2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/bsdutils/1:2.37.2-4/binfiles?fileinfo=1 Get binary package info: build-essential=12.9 Binary URL: http://snapshot.notset.fr/mr/binary/build-essential/12.9/binfiles?fileinfo=1 Get binary package info: bzip2=1.0.8-4 Binary URL: http://snapshot.notset.fr/mr/binary/bzip2/1.0.8-4/binfiles?fileinfo=1 Get binary package info: cmake=3.22.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/cmake/3.22.0-1/binfiles?fileinfo=1 Get binary package info: cmake-data=3.22.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/cmake-data/3.22.0-1/binfiles?fileinfo=1 Get binary package info: coreutils=8.32-4.1 Binary URL: http://snapshot.notset.fr/mr/binary/coreutils/8.32-4.1/binfiles?fileinfo=1 Get binary package info: cpp=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/cpp/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: cpp-11=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/cpp-11/11.2.0-12/binfiles?fileinfo=1 Get binary package info: dash=0.5.11+git20210903+057cd650a4ed-3 Binary URL: http://snapshot.notset.fr/mr/binary/dash/0.5.11+git20210903+057cd650a4ed-3/binfiles?fileinfo=1 Get binary package info: debconf=1.5.79 Binary URL: http://snapshot.notset.fr/mr/binary/debconf/1.5.79/binfiles?fileinfo=1 Get binary package info: debhelper=13.5.2 Binary URL: http://snapshot.notset.fr/mr/binary/debhelper/13.5.2/binfiles?fileinfo=1 Get binary package info: debianutils=5.5-1 Binary URL: http://snapshot.notset.fr/mr/binary/debianutils/5.5-1/binfiles?fileinfo=1 Get binary package info: dh-autoreconf=20 Binary URL: http://snapshot.notset.fr/mr/binary/dh-autoreconf/20/binfiles?fileinfo=1 Get binary package info: dh-elpa-helper=2.0.9 Binary URL: http://snapshot.notset.fr/mr/binary/dh-elpa-helper/2.0.9/binfiles?fileinfo=1 Get binary package info: dh-strip-nondeterminism=1.12.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/dh-strip-nondeterminism/1.12.1-1/binfiles?fileinfo=1 Get binary package info: diffutils=1:3.7-5 Binary URL: http://snapshot.notset.fr/mr/binary/diffutils/1:3.7-5/binfiles?fileinfo=1 Get binary package info: dpkg=1.20.9 Binary URL: http://snapshot.notset.fr/mr/binary/dpkg/1.20.9/binfiles?fileinfo=1 Get binary package info: dpkg-dev=1.20.9 Binary URL: http://snapshot.notset.fr/mr/binary/dpkg-dev/1.20.9/binfiles?fileinfo=1 Get binary package info: dwz=0.14-1 Binary URL: http://snapshot.notset.fr/mr/binary/dwz/0.14-1/binfiles?fileinfo=1 Get binary package info: emacsen-common=3.0.4 Binary URL: http://snapshot.notset.fr/mr/binary/emacsen-common/3.0.4/binfiles?fileinfo=1 Get binary package info: file=1:5.41-2 Binary URL: http://snapshot.notset.fr/mr/binary/file/1:5.41-2/binfiles?fileinfo=1 Get binary package info: findutils=4.8.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/findutils/4.8.0-1/binfiles?fileinfo=1 Get binary package info: fontconfig-config=2.13.1-4.2 Binary URL: http://snapshot.notset.fr/mr/binary/fontconfig-config/2.13.1-4.2/binfiles?fileinfo=1 Get binary package info: fonts-dejavu-core=2.37-2 Binary URL: http://snapshot.notset.fr/mr/binary/fonts-dejavu-core/2.37-2/binfiles?fileinfo=1 Get binary package info: g++=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/g++/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: g++-11=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/g++-11/11.2.0-12/binfiles?fileinfo=1 Get binary package info: gcc=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/gcc/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: gcc-11=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-11/11.2.0-12/binfiles?fileinfo=1 Get binary package info: gcc-11-base=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-11-base/11.2.0-12/binfiles?fileinfo=1 Get binary package info: gettext=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/gettext/0.21-4/binfiles?fileinfo=1 Get binary package info: gettext-base=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/gettext-base/0.21-4/binfiles?fileinfo=1 Get binary package info: grep=3.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/grep/3.7-1/binfiles?fileinfo=1 Get binary package info: groff-base=1.22.4-7 Binary URL: http://snapshot.notset.fr/mr/binary/groff-base/1.22.4-7/binfiles?fileinfo=1 Get binary package info: gzip=1.10-4 Binary URL: http://snapshot.notset.fr/mr/binary/gzip/1.10-4/binfiles?fileinfo=1 Get binary package info: help2man=1.48.5 Binary URL: http://snapshot.notset.fr/mr/binary/help2man/1.48.5/binfiles?fileinfo=1 Get binary package info: hicolor-icon-theme=0.17-2 Binary URL: http://snapshot.notset.fr/mr/binary/hicolor-icon-theme/0.17-2/binfiles?fileinfo=1 Get binary package info: hostname=3.23 Binary URL: http://snapshot.notset.fr/mr/binary/hostname/3.23/binfiles?fileinfo=1 Get binary package info: imagemagick=8:6.9.11.60+dfsg-1.3 Binary URL: http://snapshot.notset.fr/mr/binary/imagemagick/8:6.9.11.60+dfsg-1.3/binfiles?fileinfo=1 Get binary package info: imagemagick-6-common=8:6.9.11.60+dfsg-1.3 Binary URL: http://snapshot.notset.fr/mr/binary/imagemagick-6-common/8:6.9.11.60+dfsg-1.3/binfiles?fileinfo=1 Get binary package info: imagemagick-6.q16=8:6.9.11.60+dfsg-1.3 Binary URL: http://snapshot.notset.fr/mr/binary/imagemagick-6.q16/8:6.9.11.60+dfsg-1.3/binfiles?fileinfo=1 Get binary package info: init-system-helpers=1.60 Binary URL: http://snapshot.notset.fr/mr/binary/init-system-helpers/1.60/binfiles?fileinfo=1 Get binary package info: intltool-debian=0.35.0+20060710.5 Binary URL: http://snapshot.notset.fr/mr/binary/intltool-debian/0.35.0+20060710.5/binfiles?fileinfo=1 Get binary package info: libacl1=2.3.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libacl1/2.3.1-1/binfiles?fileinfo=1 Get binary package info: libaom3=3.2.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaom3/3.2.0-1/binfiles?fileinfo=1 Get binary package info: libarchive-zip-perl=1.68-1 Binary URL: http://snapshot.notset.fr/mr/binary/libarchive-zip-perl/1.68-1/binfiles?fileinfo=1 Get binary package info: libarchive13=3.4.3-2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libarchive13/3.4.3-2+b1/binfiles?fileinfo=1 Get binary package info: libasan6=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/libasan6/11.2.0-12/binfiles?fileinfo=1 Get binary package info: libatomic1=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/libatomic1/11.2.0-12/binfiles?fileinfo=1 Get binary package info: libattr1=1:2.5.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libattr1/1:2.5.1-1/binfiles?fileinfo=1 Get binary package info: libaudit-common=1:3.0.6-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaudit-common/1:3.0.6-1/binfiles?fileinfo=1 Get binary package info: libaudit1=1:3.0.6-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libaudit1/1:3.0.6-1+b1/binfiles?fileinfo=1 Get binary package info: libbinutils=2.37-10 Binary URL: http://snapshot.notset.fr/mr/binary/libbinutils/2.37-10/binfiles?fileinfo=1 Get binary package info: libblkid1=2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/libblkid1/2.37.2-4/binfiles?fileinfo=1 Get binary package info: libbrotli1=1.0.9-2+b3 Binary URL: http://snapshot.notset.fr/mr/binary/libbrotli1/1.0.9-2+b3/binfiles?fileinfo=1 Get binary package info: libbsd0=0.11.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libbsd0/0.11.3-1/binfiles?fileinfo=1 Get binary package info: libbz2-1.0=1.0.8-4 Binary URL: http://snapshot.notset.fr/mr/binary/libbz2-1.0/1.0.8-4/binfiles?fileinfo=1 Get binary package info: libc-bin=2.32-4 Binary URL: http://snapshot.notset.fr/mr/binary/libc-bin/2.32-4/binfiles?fileinfo=1 Get binary package info: libc-dev-bin=2.32-4 Binary URL: http://snapshot.notset.fr/mr/binary/libc-dev-bin/2.32-4/binfiles?fileinfo=1 Get binary package info: libc6=2.32-4 Binary URL: http://snapshot.notset.fr/mr/binary/libc6/2.32-4/binfiles?fileinfo=1 Get binary package info: libc6-dev=2.32-4 Binary URL: http://snapshot.notset.fr/mr/binary/libc6-dev/2.32-4/binfiles?fileinfo=1 Get binary package info: libcap-ng0=0.7.9-2.2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libcap-ng0/0.7.9-2.2+b1/binfiles?fileinfo=1 Get binary package info: libcap2=1:2.44-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcap2/1:2.44-1/binfiles?fileinfo=1 Get binary package info: libcc1-0=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/libcc1-0/11.2.0-12/binfiles?fileinfo=1 Get binary package info: libcom-err2=1.46.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcom-err2/1.46.4-1/binfiles?fileinfo=1 Get binary package info: libcrypt-dev=1:4.4.26-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcrypt-dev/1:4.4.26-1/binfiles?fileinfo=1 Get binary package info: libcrypt1=1:4.4.26-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcrypt1/1:4.4.26-1/binfiles?fileinfo=1 Get binary package info: libctf-nobfd0=2.37-10 Binary URL: http://snapshot.notset.fr/mr/binary/libctf-nobfd0/2.37-10/binfiles?fileinfo=1 Get binary package info: libctf0=2.37-10 Binary URL: http://snapshot.notset.fr/mr/binary/libctf0/2.37-10/binfiles?fileinfo=1 Get binary package info: libcurl4=7.79.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libcurl4/7.79.1-2/binfiles?fileinfo=1 Get binary package info: libdav1d5=0.9.2-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libdav1d5/0.9.2-1+b1/binfiles?fileinfo=1 Get binary package info: libdb5.3=5.3.28+dfsg1-0.8 Binary URL: http://snapshot.notset.fr/mr/binary/libdb5.3/5.3.28+dfsg1-0.8/binfiles?fileinfo=1 Get binary package info: libde265-0=1.0.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/libde265-0/1.0.8-1/binfiles?fileinfo=1 Get binary package info: libdebconfclient0=0.261 Binary URL: http://snapshot.notset.fr/mr/binary/libdebconfclient0/0.261/binfiles?fileinfo=1 Get binary package info: libdebhelper-perl=13.5.2 Binary URL: http://snapshot.notset.fr/mr/binary/libdebhelper-perl/13.5.2/binfiles?fileinfo=1 Get binary package info: libdeflate0=1.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/libdeflate0/1.8-1/binfiles?fileinfo=1 Get binary package info: libdpkg-perl=1.20.9 Binary URL: http://snapshot.notset.fr/mr/binary/libdpkg-perl/1.20.9/binfiles?fileinfo=1 Get binary package info: libelf1=0.186-1 Binary URL: http://snapshot.notset.fr/mr/binary/libelf1/0.186-1/binfiles?fileinfo=1 Get binary package info: libexpat1=2.4.1-3 Binary URL: http://snapshot.notset.fr/mr/binary/libexpat1/2.4.1-3/binfiles?fileinfo=1 Get binary package info: libffi8=3.4.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/libffi8/3.4.2-3/binfiles?fileinfo=1 Get binary package info: libfftw3-double3=3.3.8-2 Binary URL: http://snapshot.notset.fr/mr/binary/libfftw3-double3/3.3.8-2/binfiles?fileinfo=1 Get binary package info: libfile-stripnondeterminism-perl=1.12.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libfile-stripnondeterminism-perl/1.12.1-1/binfiles?fileinfo=1 Get binary package info: libfontconfig1=2.13.1-4.2 Binary URL: http://snapshot.notset.fr/mr/binary/libfontconfig1/2.13.1-4.2/binfiles?fileinfo=1 Get binary package info: libfreetype6=2.11.0+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/libfreetype6/2.11.0+dfsg-1/binfiles?fileinfo=1 Get binary package info: libgcc-11-dev=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/libgcc-11-dev/11.2.0-12/binfiles?fileinfo=1 Get binary package info: libgcc-s1=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/libgcc-s1/11.2.0-12/binfiles?fileinfo=1 Get binary package info: libgcrypt20=1.9.4-3+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libgcrypt20/1.9.4-3+b1/binfiles?fileinfo=1 Get binary package info: libgdbm-compat4=1.22-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgdbm-compat4/1.22-1/binfiles?fileinfo=1 Get binary package info: libgdbm6=1.22-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgdbm6/1.22-1/binfiles?fileinfo=1 Get binary package info: libglib2.0-0=2.70.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libglib2.0-0/2.70.1-1/binfiles?fileinfo=1 Get binary package info: libgmp10=2:6.2.1+dfsg-3 Binary URL: http://snapshot.notset.fr/mr/binary/libgmp10/2:6.2.1+dfsg-3/binfiles?fileinfo=1 Get binary package info: libgnutls30=3.7.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libgnutls30/3.7.2-2/binfiles?fileinfo=1 Get binary package info: libgomp1=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/libgomp1/11.2.0-12/binfiles?fileinfo=1 Get binary package info: libgpg-error0=1.42-3 Binary URL: http://snapshot.notset.fr/mr/binary/libgpg-error0/1.42-3/binfiles?fileinfo=1 Get binary package info: libgssapi-krb5-2=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libgssapi-krb5-2/1.18.3-7/binfiles?fileinfo=1 Get binary package info: libheif1=1.12.0-2+b3 Binary URL: http://snapshot.notset.fr/mr/binary/libheif1/1.12.0-2+b3/binfiles?fileinfo=1 Get binary package info: libhogweed6=3.7.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libhogweed6/3.7.3-1/binfiles?fileinfo=1 Get binary package info: libicu67=67.1-7 Binary URL: http://snapshot.notset.fr/mr/binary/libicu67/67.1-7/binfiles?fileinfo=1 Get binary package info: libidn2-0=2.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libidn2-0/2.3.2-2/binfiles?fileinfo=1 Get binary package info: libisl23=0.24-2 Binary URL: http://snapshot.notset.fr/mr/binary/libisl23/0.24-2/binfiles?fileinfo=1 Get binary package info: libitm1=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/libitm1/11.2.0-12/binfiles?fileinfo=1 Get binary package info: libjbig0=2.1-3.1+b2 Binary URL: http://snapshot.notset.fr/mr/binary/libjbig0/2.1-3.1+b2/binfiles?fileinfo=1 Get binary package info: libjpeg62-turbo=1:2.1.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libjpeg62-turbo/1:2.1.1-2/binfiles?fileinfo=1 Get binary package info: libjsoncpp24=1.9.4-5 Binary URL: http://snapshot.notset.fr/mr/binary/libjsoncpp24/1.9.4-5/binfiles?fileinfo=1 Get binary package info: libk5crypto3=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libk5crypto3/1.18.3-7/binfiles?fileinfo=1 Get binary package info: libkeyutils1=1.6.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libkeyutils1/1.6.1-2/binfiles?fileinfo=1 Get binary package info: libkrb5-3=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libkrb5-3/1.18.3-7/binfiles?fileinfo=1 Get binary package info: libkrb5support0=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libkrb5support0/1.18.3-7/binfiles?fileinfo=1 Get binary package info: liblcms2-2=2.12~rc1-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblcms2-2/2.12~rc1-2/binfiles?fileinfo=1 Get binary package info: libldap-2.4-2=2.4.59+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/libldap-2.4-2/2.4.59+dfsg-1/binfiles?fileinfo=1 Get binary package info: liblocale-gettext-perl=1.07-4+b1 Binary URL: http://snapshot.notset.fr/mr/binary/liblocale-gettext-perl/1.07-4+b1/binfiles?fileinfo=1 Get binary package info: liblqr-1-0=0.4.2-2.1 Binary URL: http://snapshot.notset.fr/mr/binary/liblqr-1-0/0.4.2-2.1/binfiles?fileinfo=1 Get binary package info: liblsan0=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/liblsan0/11.2.0-12/binfiles?fileinfo=1 Get binary package info: libltdl7=2.4.6-15 Binary URL: http://snapshot.notset.fr/mr/binary/libltdl7/2.4.6-15/binfiles?fileinfo=1 Get binary package info: liblz4-1=1.9.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblz4-1/1.9.3-2/binfiles?fileinfo=1 Get binary package info: liblzma5=5.2.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblzma5/5.2.5-2/binfiles?fileinfo=1 Get binary package info: libmagic-mgc=1:5.41-2 Binary URL: http://snapshot.notset.fr/mr/binary/libmagic-mgc/1:5.41-2/binfiles?fileinfo=1 Get binary package info: libmagic1=1:5.41-2 Binary URL: http://snapshot.notset.fr/mr/binary/libmagic1/1:5.41-2/binfiles?fileinfo=1 Get binary package info: libmagickcore-6.q16-6=8:6.9.11.60+dfsg-1.3 Binary URL: http://snapshot.notset.fr/mr/binary/libmagickcore-6.q16-6/8:6.9.11.60+dfsg-1.3/binfiles?fileinfo=1 Get binary package info: libmagickwand-6.q16-6=8:6.9.11.60+dfsg-1.3 Binary URL: http://snapshot.notset.fr/mr/binary/libmagickwand-6.q16-6/8:6.9.11.60+dfsg-1.3/binfiles?fileinfo=1 Get binary package info: libmd0=1.0.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libmd0/1.0.4-1/binfiles?fileinfo=1 Get binary package info: libmount1=2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/libmount1/2.37.2-4/binfiles?fileinfo=1 Get binary package info: libmpc3=1.2.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libmpc3/1.2.1-1/binfiles?fileinfo=1 Get binary package info: libmpfr6=4.1.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmpfr6/4.1.0-3/binfiles?fileinfo=1 Get binary package info: libncurses6=6.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libncurses6/6.3-1/binfiles?fileinfo=1 Get binary package info: libncursesw6=6.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libncursesw6/6.3-1/binfiles?fileinfo=1 Get binary package info: libnettle8=3.7.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libnettle8/3.7.3-1/binfiles?fileinfo=1 Get binary package info: libnghttp2-14=1.43.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libnghttp2-14/1.43.0-1/binfiles?fileinfo=1 Get binary package info: libnsl-dev=1.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libnsl-dev/1.3.0-2/binfiles?fileinfo=1 Get binary package info: libnsl2=1.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libnsl2/1.3.0-2/binfiles?fileinfo=1 Get binary package info: libnuma1=2.0.14-3 Binary URL: http://snapshot.notset.fr/mr/binary/libnuma1/2.0.14-3/binfiles?fileinfo=1 Get binary package info: libopenjp2-7=2.4.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libopenjp2-7/2.4.0-3/binfiles?fileinfo=1 Get binary package info: libp11-kit0=0.24.0-5 Binary URL: http://snapshot.notset.fr/mr/binary/libp11-kit0/0.24.0-5/binfiles?fileinfo=1 Get binary package info: libpam-modules=1.4.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-modules/1.4.0-10/binfiles?fileinfo=1 Get binary package info: libpam-modules-bin=1.4.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-modules-bin/1.4.0-10/binfiles?fileinfo=1 Get binary package info: libpam-runtime=1.4.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-runtime/1.4.0-10/binfiles?fileinfo=1 Get binary package info: libpam0g=1.4.0-10 Binary URL: http://snapshot.notset.fr/mr/binary/libpam0g/1.4.0-10/binfiles?fileinfo=1 Get binary package info: libpcre2-8-0=10.39-3 Binary URL: http://snapshot.notset.fr/mr/binary/libpcre2-8-0/10.39-3/binfiles?fileinfo=1 Get binary package info: libpcre3=2:8.39-13 Binary URL: http://snapshot.notset.fr/mr/binary/libpcre3/2:8.39-13/binfiles?fileinfo=1 Get binary package info: libperl5.32=5.32.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/libperl5.32/5.32.1-6/binfiles?fileinfo=1 Get binary package info: libpipeline1=1.5.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpipeline1/1.5.4-1/binfiles?fileinfo=1 Get binary package info: libpng16-16=1.6.37-3 Binary URL: http://snapshot.notset.fr/mr/binary/libpng16-16/1.6.37-3/binfiles?fileinfo=1 Get binary package info: libprocps8=2:3.3.17-5 Binary URL: http://snapshot.notset.fr/mr/binary/libprocps8/2:3.3.17-5/binfiles?fileinfo=1 Get binary package info: libpsl5=0.21.0-1.2 Binary URL: http://snapshot.notset.fr/mr/binary/libpsl5/0.21.0-1.2/binfiles?fileinfo=1 Get binary package info: libquadmath0=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/libquadmath0/11.2.0-12/binfiles?fileinfo=1 Get binary package info: librhash0=1.4.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/librhash0/1.4.2-1/binfiles?fileinfo=1 Get binary package info: librtmp1=2.4+20151223.gitfa8646d.1-2+b2 Binary URL: http://snapshot.notset.fr/mr/binary/librtmp1/2.4+20151223.gitfa8646d.1-2+b2/binfiles?fileinfo=1 Get binary package info: libsasl2-2=2.1.27+dfsg2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsasl2-2/2.1.27+dfsg2-2/binfiles?fileinfo=1 Get binary package info: libsasl2-modules-db=2.1.27+dfsg2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsasl2-modules-db/2.1.27+dfsg2-2/binfiles?fileinfo=1 Get binary package info: libseccomp2=2.5.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libseccomp2/2.5.3-2/binfiles?fileinfo=1 Get binary package info: libselinux1=3.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libselinux1/3.3-1+b1/binfiles?fileinfo=1 Get binary package info: libsigsegv2=2.13-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsigsegv2/2.13-1/binfiles?fileinfo=1 Get binary package info: libsimde-dev=0.7.2-5 Binary URL: http://snapshot.notset.fr/mr/binary/libsimde-dev/0.7.2-5/binfiles?fileinfo=1 Get binary package info: libsmartcols1=2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/libsmartcols1/2.37.2-4/binfiles?fileinfo=1 Get binary package info: libssh2-1=1.10.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libssh2-1/1.10.0-2/binfiles?fileinfo=1 Get binary package info: libssl1.1=1.1.1l-1 Binary URL: http://snapshot.notset.fr/mr/binary/libssl1.1/1.1.1l-1/binfiles?fileinfo=1 Get binary package info: libstdc++-11-dev=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/libstdc++-11-dev/11.2.0-12/binfiles?fileinfo=1 Get binary package info: libstdc++6=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/libstdc++6/11.2.0-12/binfiles?fileinfo=1 Get binary package info: libsub-override-perl=0.09-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsub-override-perl/0.09-2/binfiles?fileinfo=1 Get binary package info: libsystemd0=249.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsystemd0/249.7-1/binfiles?fileinfo=1 Get binary package info: libtasn1-6=4.18.0-4 Binary URL: http://snapshot.notset.fr/mr/binary/libtasn1-6/4.18.0-4/binfiles?fileinfo=1 Get binary package info: libtiff5=4.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtiff5/4.3.0-2/binfiles?fileinfo=1 Get binary package info: libtinfo6=6.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libtinfo6/6.3-1/binfiles?fileinfo=1 Get binary package info: libtirpc-common=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc-common/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtirpc-dev=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc-dev/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtirpc3=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc3/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtool=2.4.6-15 Binary URL: http://snapshot.notset.fr/mr/binary/libtool/2.4.6-15/binfiles?fileinfo=1 Get binary package info: libtsan0=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/libtsan0/11.2.0-12/binfiles?fileinfo=1 Get binary package info: libubsan1=11.2.0-12 Binary URL: http://snapshot.notset.fr/mr/binary/libubsan1/11.2.0-12/binfiles?fileinfo=1 Get binary package info: libuchardet0=0.0.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libuchardet0/0.0.7-1/binfiles?fileinfo=1 Get binary package info: libudev1=249.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libudev1/249.7-1/binfiles?fileinfo=1 Get binary package info: libunistring2=0.9.10-6 Binary URL: http://snapshot.notset.fr/mr/binary/libunistring2/0.9.10-6/binfiles?fileinfo=1 Get binary package info: libuuid1=2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/libuuid1/2.37.2-4/binfiles?fileinfo=1 Get binary package info: libuv1=1.42.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libuv1/1.42.0-1/binfiles?fileinfo=1 Get binary package info: libwebp6=0.6.1-2.1 Binary URL: http://snapshot.notset.fr/mr/binary/libwebp6/0.6.1-2.1/binfiles?fileinfo=1 Get binary package info: libwebpdemux2=0.6.1-2.1 Binary URL: http://snapshot.notset.fr/mr/binary/libwebpdemux2/0.6.1-2.1/binfiles?fileinfo=1 Get binary package info: libwebpmux3=0.6.1-2.1 Binary URL: http://snapshot.notset.fr/mr/binary/libwebpmux3/0.6.1-2.1/binfiles?fileinfo=1 Get binary package info: libx11-6=2:1.7.2-2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libx11-6/2:1.7.2-2+b1/binfiles?fileinfo=1 Get binary package info: libx11-data=2:1.7.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libx11-data/2:1.7.2-2/binfiles?fileinfo=1 Get binary package info: libx265-199=3.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/libx265-199/3.5-2/binfiles?fileinfo=1 Get binary package info: libxau6=1:1.0.9-1 Binary URL: http://snapshot.notset.fr/mr/binary/libxau6/1:1.0.9-1/binfiles?fileinfo=1 Get binary package info: libxcb1=1.14-3 Binary URL: http://snapshot.notset.fr/mr/binary/libxcb1/1.14-3/binfiles?fileinfo=1 Get binary package info: libxdmcp6=1:1.1.2-3 Binary URL: http://snapshot.notset.fr/mr/binary/libxdmcp6/1:1.1.2-3/binfiles?fileinfo=1 Get binary package info: libxext6=2:1.3.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libxext6/2:1.3.4-1/binfiles?fileinfo=1 Get binary package info: libxml2=2.9.12+dfsg-5+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libxml2/2.9.12+dfsg-5+b1/binfiles?fileinfo=1 Get binary package info: libzstd1=1.4.8+dfsg-3 Binary URL: http://snapshot.notset.fr/mr/binary/libzstd1/1.4.8+dfsg-3/binfiles?fileinfo=1 Get binary package info: linux-libc-dev=5.15.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/linux-libc-dev/5.15.3-1/binfiles?fileinfo=1 Get binary package info: login=1:4.8.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/login/1:4.8.1-2/binfiles?fileinfo=1 Get binary package info: lsb-base=11.1.0 Binary URL: http://snapshot.notset.fr/mr/binary/lsb-base/11.1.0/binfiles?fileinfo=1 Get binary package info: m4=1.4.18-5 Binary URL: http://snapshot.notset.fr/mr/binary/m4/1.4.18-5/binfiles?fileinfo=1 Get binary package info: make=4.3-4.1 Binary URL: http://snapshot.notset.fr/mr/binary/make/4.3-4.1/binfiles?fileinfo=1 Get binary package info: man-db=2.9.4-2 Binary URL: http://snapshot.notset.fr/mr/binary/man-db/2.9.4-2/binfiles?fileinfo=1 Get binary package info: mawk=1.3.4.20200120-2 Binary URL: http://snapshot.notset.fr/mr/binary/mawk/1.3.4.20200120-2/binfiles?fileinfo=1 Get binary package info: ncurses-base=6.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/ncurses-base/6.3-1/binfiles?fileinfo=1 Get binary package info: ncurses-bin=6.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/ncurses-bin/6.3-1/binfiles?fileinfo=1 Get binary package info: patch=2.7.6-7 Binary URL: http://snapshot.notset.fr/mr/binary/patch/2.7.6-7/binfiles?fileinfo=1 Get binary package info: perl=5.32.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/perl/5.32.1-6/binfiles?fileinfo=1 Get binary package info: perl-base=5.32.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/perl-base/5.32.1-6/binfiles?fileinfo=1 Get binary package info: perl-modules-5.32=5.32.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/perl-modules-5.32/5.32.1-6/binfiles?fileinfo=1 Get binary package info: po-debconf=1.0.21+nmu1 Binary URL: http://snapshot.notset.fr/mr/binary/po-debconf/1.0.21+nmu1/binfiles?fileinfo=1 Get binary package info: procps=2:3.3.17-5 Binary URL: http://snapshot.notset.fr/mr/binary/procps/2:3.3.17-5/binfiles?fileinfo=1 Get binary package info: rpcsvc-proto=1.4.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/rpcsvc-proto/1.4.2-4/binfiles?fileinfo=1 Get binary package info: sed=4.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/sed/4.8-1/binfiles?fileinfo=1 Get binary package info: sensible-utils=0.0.17 Binary URL: http://snapshot.notset.fr/mr/binary/sensible-utils/0.0.17/binfiles?fileinfo=1 Get binary package info: sysvinit-utils=3.00-1 Binary URL: http://snapshot.notset.fr/mr/binary/sysvinit-utils/3.00-1/binfiles?fileinfo=1 Get binary package info: tar=1.34+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/tar/1.34+dfsg-1/binfiles?fileinfo=1 Get binary package info: ucf=3.0043 Binary URL: http://snapshot.notset.fr/mr/binary/ucf/3.0043/binfiles?fileinfo=1 Get binary package info: util-linux=2.37.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/util-linux/2.37.2-4/binfiles?fileinfo=1 Get binary package info: xz-utils=5.2.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/xz-utils/5.2.5-2/binfiles?fileinfo=1 Get binary package info: zlib1g=1:1.2.11.dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/zlib1g/1:1.2.11.dfsg-2/binfiles?fileinfo=1 Remaining packages to be found: 220 Timestamp source (78 packages): deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210922T025414Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211025T025314Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211122T030439Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210902T030735Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211121T025700Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211118T025207Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211103T025035Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210901T090918Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210830T143924Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210928T151606Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210926T025629Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211118T205424Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211124T025830Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210823T024636Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210828T025147Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210930T025245Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211122T092024Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211125T024936Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210827T030044Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211104T025430Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211014T085745Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211113T032700Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211123T025155Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211022T024712Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211008T024925Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210911T144836Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211107T031827Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211108T025858Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211105T024921Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210925T024544Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210816T024705Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210909T025907Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210903T030245Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210822T144048Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211114T025323Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210919T145255Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211012T024642Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211030T025126Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211016T025026Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211021T084416Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211108T153006Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210818T085356Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211019T025145Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210927T025314Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211110T025455Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211015T025547Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210927T084912Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211006T084856Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210822T023545Z/ bookworm main Remaining packages to be found: 26 Timestamp source (1 packages): deb http://snapshot.notset.fr/archive/debian/20211126T030046Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211116T030053Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210824T024320Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210928T025308Z/ bookworm main Remaining packages to be found: 25 Timestamp source (17 packages): deb http://snapshot.notset.fr/archive/debian/20211119T150950Z/ unstable main New buildinfo file: /tmp/hhsuite-3.3.0+ds-6xwrdp5s5/hhsuite_3.3.0+ds-6_amd64.buildinfo env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf:all=2.71-2 automake:all=1:1.16.5-1.1 autopoint:all=0.21-4 autotools-dev:all=20180224.1+nmu1 base-files:amd64=12 base-passwd:amd64=3.5.52 bash:amd64=5.1-3.1 binutils:amd64=2.37-10 binutils-common:amd64=2.37-10 binutils-x86-64-linux-gnu:amd64=2.37-10 bsdextrautils:amd64=2.37.2-4 bsdutils:amd64=1:2.37.2-4 build-essential:amd64=12.9 bzip2:amd64=1.0.8-4 cmake:amd64=3.22.0-1 cmake-data:all=3.22.0-1 coreutils:amd64=8.32-4.1 cpp:amd64=4:11.2.0-2 cpp-11:amd64=11.2.0-12 dash:amd64=0.5.11+git20210903+057cd650a4ed-3 debconf:all=1.5.79 debhelper:all=13.5.2 debianutils:amd64=5.5-1 dh-autoreconf:all=20 dh-elpa-helper:all=2.0.9 dh-strip-nondeterminism:all=1.12.1-1 diffutils:amd64=1:3.7-5 dpkg:amd64=1.20.9 dpkg-dev:all=1.20.9 dwz:amd64=0.14-1 emacsen-common:all=3.0.4 file:amd64=1:5.41-2 findutils:amd64=4.8.0-1 fontconfig-config:all=2.13.1-4.2 fonts-dejavu-core:all=2.37-2 g++:amd64=4:11.2.0-2 g++-11:amd64=11.2.0-12 gcc:amd64=4:11.2.0-2 gcc-11:amd64=11.2.0-12 gcc-11-base:amd64=11.2.0-12 gettext:amd64=0.21-4 gettext-base:amd64=0.21-4 grep:amd64=3.7-1 groff-base:amd64=1.22.4-7 gzip:amd64=1.10-4 help2man:amd64=1.48.5 hicolor-icon-theme:all=0.17-2 hostname:amd64=3.23 imagemagick:amd64=8:6.9.11.60+dfsg-1.3 imagemagick-6-common:all=8:6.9.11.60+dfsg-1.3 imagemagick-6.q16:amd64=8:6.9.11.60+dfsg-1.3 init-system-helpers:all=1.60 intltool-debian:all=0.35.0+20060710.5 libacl1:amd64=2.3.1-1 libaom3:amd64=3.2.0-1 libarchive-zip-perl:all=1.68-1 libarchive13:amd64=3.4.3-2+b1 libasan6:amd64=11.2.0-12 libatomic1:amd64=11.2.0-12 libattr1:amd64=1:2.5.1-1 libaudit-common:all=1:3.0.6-1 libaudit1:amd64=1:3.0.6-1+b1 libbinutils:amd64=2.37-10 libblkid1:amd64=2.37.2-4 libbrotli1:amd64=1.0.9-2+b3 libbsd0:amd64=0.11.3-1 libbz2-1.0:amd64=1.0.8-4 libc-bin:amd64=2.32-4 libc-dev-bin:amd64=2.32-4 libc6:amd64=2.32-4 libc6-dev:amd64=2.32-4 libcap-ng0:amd64=0.7.9-2.2+b1 libcap2:amd64=1:2.44-1 libcc1-0:amd64=11.2.0-12 libcom-err2:amd64=1.46.4-1 libcrypt-dev:amd64=1:4.4.26-1 libcrypt1:amd64=1:4.4.26-1 libctf-nobfd0:amd64=2.37-10 libctf0:amd64=2.37-10 libcurl4:amd64=7.79.1-2 libdav1d5:amd64=0.9.2-1+b1 libdb5.3:amd64=5.3.28+dfsg1-0.8 libde265-0:amd64=1.0.8-1 libdebconfclient0:amd64=0.261 libdebhelper-perl:all=13.5.2 libdeflate0:amd64=1.8-1 libdpkg-perl:all=1.20.9 libelf1:amd64=0.186-1 libexpat1:amd64=2.4.1-3 libffi8:amd64=3.4.2-3 libfftw3-double3:amd64=3.3.8-2 libfile-stripnondeterminism-perl:all=1.12.1-1 libfontconfig1:amd64=2.13.1-4.2 libfreetype6:amd64=2.11.0+dfsg-1 libgcc-11-dev:amd64=11.2.0-12 libgcc-s1:amd64=11.2.0-12 libgcrypt20:amd64=1.9.4-3+b1 libgdbm-compat4:amd64=1.22-1 libgdbm6:amd64=1.22-1 libglib2.0-0:amd64=2.70.1-1 libgmp10:amd64=2:6.2.1+dfsg-3 libgnutls30:amd64=3.7.2-2 libgomp1:amd64=11.2.0-12 libgpg-error0:amd64=1.42-3 libgssapi-krb5-2:amd64=1.18.3-7 libheif1:amd64=1.12.0-2+b3 libhogweed6:amd64=3.7.3-1 libicu67:amd64=67.1-7 libidn2-0:amd64=2.3.2-2 libisl23:amd64=0.24-2 libitm1:amd64=11.2.0-12 libjbig0:amd64=2.1-3.1+b2 libjpeg62-turbo:amd64=1:2.1.1-2 libjsoncpp24:amd64=1.9.4-5 libk5crypto3:amd64=1.18.3-7 libkeyutils1:amd64=1.6.1-2 libkrb5-3:amd64=1.18.3-7 libkrb5support0:amd64=1.18.3-7 liblcms2-2:amd64=2.12~rc1-2 libldap-2.4-2:amd64=2.4.59+dfsg-1 liblocale-gettext-perl:amd64=1.07-4+b1 liblqr-1-0:amd64=0.4.2-2.1 liblsan0:amd64=11.2.0-12 libltdl7:amd64=2.4.6-15 liblz4-1:amd64=1.9.3-2 liblzma5:amd64=5.2.5-2 libmagic-mgc:amd64=1:5.41-2 libmagic1:amd64=1:5.41-2 libmagickcore-6.q16-6:amd64=8:6.9.11.60+dfsg-1.3 libmagickwand-6.q16-6:amd64=8:6.9.11.60+dfsg-1.3 libmd0:amd64=1.0.4-1 libmount1:amd64=2.37.2-4 libmpc3:amd64=1.2.1-1 libmpfr6:amd64=4.1.0-3 libncurses6:amd64=6.3-1 libncursesw6:amd64=6.3-1 libnettle8:amd64=3.7.3-1 libnghttp2-14:amd64=1.43.0-1 libnsl-dev:amd64=1.3.0-2 libnsl2:amd64=1.3.0-2 libnuma1:amd64=2.0.14-3 libopenjp2-7:amd64=2.4.0-3 libp11-kit0:amd64=0.24.0-5 libpam-modules:amd64=1.4.0-10 libpam-modules-bin:amd64=1.4.0-10 libpam-runtime:all=1.4.0-10 libpam0g:amd64=1.4.0-10 libpcre2-8-0:amd64=10.39-3 libpcre3:amd64=2:8.39-13 libperl5.32:amd64=5.32.1-6 libpipeline1:amd64=1.5.4-1 libpng16-16:amd64=1.6.37-3 libprocps8:amd64=2:3.3.17-5 libpsl5:amd64=0.21.0-1.2 libquadmath0:amd64=11.2.0-12 librhash0:amd64=1.4.2-1 librtmp1:amd64=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2:amd64=2.1.27+dfsg2-2 libsasl2-modules-db:amd64=2.1.27+dfsg2-2 libseccomp2:amd64=2.5.3-2 libselinux1:amd64=3.3-1+b1 libsigsegv2:amd64=2.13-1 libsimde-dev:all=0.7.2-5 libsmartcols1:amd64=2.37.2-4 libssh2-1:amd64=1.10.0-2 libssl1.1:amd64=1.1.1l-1 libstdc++-11-dev:amd64=11.2.0-12 libstdc++6:amd64=11.2.0-12 libsub-override-perl:all=0.09-2 libsystemd0:amd64=249.7-1 libtasn1-6:amd64=4.18.0-4 libtiff5:amd64=4.3.0-2 libtinfo6:amd64=6.3-1 libtirpc-common:all=1.3.2-2 libtirpc-dev:amd64=1.3.2-2 libtirpc3:amd64=1.3.2-2 libtool:all=2.4.6-15 libtsan0:amd64=11.2.0-12 libubsan1:amd64=11.2.0-12 libuchardet0:amd64=0.0.7-1 libudev1:amd64=249.7-1 libunistring2:amd64=0.9.10-6 libuuid1:amd64=2.37.2-4 libuv1:amd64=1.42.0-1 libwebp6:amd64=0.6.1-2.1 libwebpdemux2:amd64=0.6.1-2.1 libwebpmux3:amd64=0.6.1-2.1 libx11-6:amd64=2:1.7.2-2+b1 libx11-data:all=2:1.7.2-2 libx265-199:amd64=3.5-2 libxau6:amd64=1:1.0.9-1 libxcb1:amd64=1.14-3 libxdmcp6:amd64=1:1.1.2-3 libxext6:amd64=2:1.3.4-1 libxml2:amd64=2.9.12+dfsg-5+b1 libzstd1:amd64=1.4.8+dfsg-3 linux-libc-dev:amd64=5.15.3-1 login:amd64=1:4.8.1-2 lsb-base:all=11.1.0 m4:amd64=1.4.18-5 make:amd64=4.3-4.1 man-db:amd64=2.9.4-2 mawk:amd64=1.3.4.20200120-2 ncurses-base:all=6.3-1 ncurses-bin:amd64=6.3-1 patch:amd64=2.7.6-7 perl:amd64=5.32.1-6 perl-base:amd64=5.32.1-6 perl-modules-5.32:all=5.32.1-6 po-debconf:all=1.0.21+nmu1 procps:amd64=2:3.3.17-5 rpcsvc-proto:amd64=1.4.2-4 sed:amd64=4.8-1 sensible-utils:all=0.0.17 sysvinit-utils:amd64=3.00-1 tar:amd64=1.34+dfsg-1 ucf:all=3.0043 util-linux:amd64=2.37.2-4 xz-utils:amd64=5.2.5-2 zlib1g:amd64=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211125T024936Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211125T024936Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211126T030046Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211119T150950Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d hhsuite=3.3.0+ds-6 && mkdir -p /build/hhsuite-yaBgg2 && dpkg-source --no-check -x /*.dsc /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds && chown -R builduser:builduser /build/hhsuite-yaBgg2" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1637616451" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/hhsuite-yaBgg2 /tmp/hhsuite-3.3.0+ds-6xwrdp5s5 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.qpvcWftvGz as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.qpvcWftvGz Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-8). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1076 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4668 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-13) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211125T024936Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211125T024936Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211126T030046Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211119T150950Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.qpvcWftvGz Get:1 http://snapshot.notset.fr/archive/debian/20211125T024936Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease Get:3 http://snapshot.notset.fr/archive/debian/20211126T030046Z bookworm InRelease [129 kB] Get:4 http://snapshot.notset.fr/archive/debian/20211119T150950Z unstable InRelease [165 kB] Ign:5 http://snapshot.notset.fr/archive/debian/20211125T024936Z bookworm/main Sources Ign:6 http://snapshot.notset.fr/archive/debian/20211125T024936Z bookworm/main amd64 Packages Ign:5 http://snapshot.notset.fr/archive/debian/20211125T024936Z bookworm/main Sources Ign:6 http://snapshot.notset.fr/archive/debian/20211125T024936Z bookworm/main amd64 Packages Ign:5 http://snapshot.notset.fr/archive/debian/20211125T024936Z bookworm/main Sources Ign:6 http://snapshot.notset.fr/archive/debian/20211125T024936Z bookworm/main amd64 Packages Get:5 http://snapshot.notset.fr/archive/debian/20211125T024936Z bookworm/main Sources [11.7 MB] Get:6 http://snapshot.notset.fr/archive/debian/20211125T024936Z bookworm/main amd64 Packages [11.2 MB] Ign:7 http://snapshot.notset.fr/archive/debian/20211126T030046Z bookworm/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20211119T150950Z unstable/main amd64 Packages Ign:7 http://snapshot.notset.fr/archive/debian/20211126T030046Z bookworm/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20211119T150950Z unstable/main amd64 Packages Ign:7 http://snapshot.notset.fr/archive/debian/20211126T030046Z bookworm/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20211119T150950Z unstable/main amd64 Packages Get:7 http://snapshot.notset.fr/archive/debian/20211126T030046Z bookworm/main amd64 Packages [11.2 MB] Get:8 http://snapshot.notset.fr/archive/debian/20211119T150950Z unstable/main amd64 Packages [12.0 MB] Fetched 46.5 MB in 37s (1247 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.qpvcWftvGz I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d hhsuite=3.3.0+ds-6 && mkdir -p /build/hhsuite-yaBgg2 && dpkg-source --no-check -x /*.dsc /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds && chown -R builduser:builduser /build/hhsuite-yaBgg2"' exec /tmp/mmdebstrap.qpvcWftvGz Reading package lists... NOTICE: 'hhsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/hhsuite.git Please use: git clone https://salsa.debian.org/med-team/hhsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4794 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211125T024936Z bookworm/main hhsuite 3.3.0+ds-6 (dsc) [2126 B] Get:2 http://snapshot.notset.fr/archive/debian/20211125T024936Z bookworm/main hhsuite 3.3.0+ds-6 (tar) [4775 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211125T024936Z bookworm/main hhsuite 3.3.0+ds-6 (diff) [16.6 kB] Fetched 4794 kB in 4s (1304 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'hhsuite_3.3.0+ds-6.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting hhsuite in /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds dpkg-source: info: unpacking hhsuite_3.3.0+ds.orig.tar.xz dpkg-source: info: unpacking hhsuite_3.3.0+ds-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_without_mpi dpkg-source: info: applying perlscript_uselib dpkg-source: info: applying perl_interpreter dpkg-source: info: applying drop-fmemopen.h.patch dpkg-source: info: applying python3 dpkg-source: info: applying ppc64el.patch dpkg-source: info: applying exe_suffix I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1637616451" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.qpvcWftvGz dpkg-buildpackage: info: source package hhsuite dpkg-buildpackage: info: source version 3.3.0+ds-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' dh_auto_clean rm -rf hhalign.1 hhblits.1 hhblits_omp.1 hhconsensus.1 hhfilter.1 hhmake.1 hhsearch.1 build-* mybuild find . -name "*.rej" -delete find . -name "*~" -delete dh_clean make[1]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' for SIMD in avx2 avx sse4.1 ssse3 sse3 ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory build_${SIMD} -- -DEXE_SUFFIX=-${SIMD} -DNATIVE_ARCH=0; \ done cd build_avx2 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-avx2 -DNATIVE_ARCH=0 .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 cd build_avx && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-avx -DNATIVE_ARCH=0 .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx cd build_sse4.1 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-sse4.1 -DNATIVE_ARCH=0 .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 cd build_ssse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-ssse3 -DNATIVE_ARCH=0 .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 cd build_sse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-sse3 -DNATIVE_ARCH=0 .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && \ dh_auto_configure --builddirectory build_plain -- -DEXE_SUFFIX=-plain -DNATIVE_ARCH=0 cd build_plain && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-plain -DNATIVE_ARCH=0 .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain make[1]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' for SIMD in avx2 avx sse4.1 ssse3 sse3 plain ; do \ dh_auto_build --builddirectory build_${SIMD} ; \ done cd build_avx2 && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' /usr/bin/cmake -S/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds -B/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/CMakeFiles /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake --color= make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/data /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/data/CMakeFiles/generated.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex.c [ 2%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 3%] Generating ../generated/context_data.crf.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl context_data.crf > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/context_data.crf.h [ 4%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 5%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffutil.c [ 6%] Linking C static library libffindex.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/ranlib libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 6%] Built target ffindex make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 7%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 8%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/context_data.crf.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/context_data.crf.h.tmp [ 9%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_with_celloff.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/context_data.crf.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/context_data.crf.h [ 10%] Generating ../generated/context_data.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl context_data.lib > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/context_data.lib.h /usr/bin/ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 10%] Built target hhviterbialgorithm_with_celloff make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/cs /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 11%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/aa.cc [ 11%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 11%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_compress.cpp [ 12%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o [ 13%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/as.cc /usr/bin/ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 13%] Built target hhviterbialgorithm_and_ss [ 14%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/assert_helpers.cc cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/context_data.lib.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/context_data.lib.h.tmp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/context_data.lib.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/context_data.lib.h [ 15%] Generating ../generated/cs219.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl cs219.lib > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/cs219.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/cs219.lib.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/cs219.lib.h.tmp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/cs219.lib.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated/cs219.lib.h make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 16%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/blosum_matrix.cc [ 17%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/getopt_pp.cc [ 17%] Built target generated make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 19%] Linking C executable ffindex_apply cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 20%] Linking CXX static library libA3M_COMPRESS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o [ 20%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 21%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_reduce.c /usr/bin/ranlib libA3M_COMPRESS.a [ 22%] Linking C executable ffindex_reduce cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 22%] Built target A3M_COMPRESS make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 23%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_build.c [ 23%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 24%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta.c [ 25%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/log.cc [ 26%] Linking C executable ffindex_build cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 27%] Linking C executable ffindex_from_fasta [ 27%] Built target ffindex_build cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake --color= /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 28%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_get.c [ 28%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 29%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o [ 30%] Linking C executable ffindex_get cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_modify.c /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 31%] Linking C executable ffindex_modify cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 [ 31%] Built target ffindex_get /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 32%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_unpack.c [ 32%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 33%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_order.c [ 34%] Linking C executable ffindex_unpack cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/application.cc [ 36%] Linking C executable ffindex_order cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a [ 36%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/a3m_extract-avx2.dir/build.make src/CMakeFiles/a3m_extract-avx2.dir/depend [ 37%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta_with_split.c make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/a3m_extract-avx2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/a3m_extract-avx2.dir/build.make src/CMakeFiles/a3m_extract-avx2.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 38%] Building CXX object src/CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_extract.cpp [ 38%] Built target ffindex_order make -f src/CMakeFiles/a3m_reduce-avx2.dir/build.make src/CMakeFiles/a3m_reduce-avx2.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/a3m_reduce-avx2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/a3m_reduce-avx2.dir/build.make src/CMakeFiles/a3m_reduce-avx2.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 39%] Building CXX object src/CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_reduce.cpp [ 40%] Linking C executable ffindex_from_fasta_with_split cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 41%] Linking CXX executable a3m_extract-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o -o a3m_extract-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a [ 41%] Built target ffindex_from_fasta_with_split make -f src/CMakeFiles/a3m_database_reduce-avx2.dir/build.make src/CMakeFiles/a3m_database_reduce-avx2.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/a3m_database_reduce-avx2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/a3m_database_reduce-avx2.dir/build.make src/CMakeFiles/a3m_database_reduce-avx2.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 42%] Building CXX object src/CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_reduce.cpp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 43%] Linking CXX executable a3m_reduce-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o -o a3m_reduce-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 43%] Built target a3m_extract-avx2 make -f src/CMakeFiles/a3m_database_extract-avx2.dir/build.make src/CMakeFiles/a3m_database_extract-avx2.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/a3m_database_extract-avx2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/a3m_database_extract-avx2.dir/build.make src/CMakeFiles/a3m_database_extract-avx2.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 44%] Building CXX object src/CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_extract.cpp [ 44%] Built target a3m_reduce-avx2 make -f src/CMakeFiles/a3m_database_filter-avx2.dir/build.make src/CMakeFiles/a3m_database_filter-avx2.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/a3m_database_filter-avx2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/a3m_database_filter-avx2.dir/build.make src/CMakeFiles/a3m_database_filter-avx2.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 45%] Building CXX object src/CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_filter.cpp [ 46%] Linking CXX executable a3m_database_reduce-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o -o a3m_database_reduce-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 46%] Built target a3m_database_reduce-avx2 [ 47%] Linking CXX static library libCS_OBJECTS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o [ 48%] Linking CXX executable a3m_database_extract-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o -o a3m_database_extract-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 48%] Built target a3m_database_extract-avx2 /usr/bin/ranlib libCS_OBJECTS.a [ 49%] Linking CXX executable a3m_database_filter-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o -o a3m_database_filter-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 49%] Built target a3m_database_filter-avx2 make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 49%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.cpp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhdecl.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhit.cpp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhmatrices.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && 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/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalign.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhitlist.cpp [ 57%] 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/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriordecoder.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhutil.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/util.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhforwardalgorithm.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhmm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriordecoderrunner.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.h:6, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhfullalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhmmsimd.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriormatrix.cpp [ 68%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd 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src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhbacktracemac.cpp [ 70%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o [ 71%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhprefilter.cpp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhmacalgorithm.cpp [ 72%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbimatrix.cpp [ 73%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhbackwardalgorithm.cpp [ 74%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/ffindexdatabase.cpp [ 75%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhdatabase.cpp [ 76%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhalfalignment.cpp [ 77%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbirunner.cpp [ 78%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhfunc.cpp [ 79%] Linking CXX static library libHH_OBJECTS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o 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-I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_app.cpp [ 81%] Building CXX object src/CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd 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/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o -o hhblits-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a [ 85%] Linking CXX executable hhfilter-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o -o hhfilter-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 85%] Built target hhblits-avx2 make -f src/CMakeFiles/hhalign-avx2.dir/build.make src/CMakeFiles/hhalign-avx2.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src 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-I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_app.cpp [ 86%] Built target hhfilter-avx2 make -f src/CMakeFiles/hhconsensus-avx2.dir/build.make src/CMakeFiles/hhconsensus-avx2.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds 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-I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhconsensus.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o -o hhsearch-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a [ 89%] Linking CXX executable hhmake-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o -o hhmake-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 89%] Built target hhsearch-avx2 make -f src/CMakeFiles/cstranslate-avx2.dir/build.make src/CMakeFiles/cstranslate-avx2.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/cstranslate-avx2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/cstranslate-avx2.dir/build.make src/CMakeFiles/cstranslate-avx2.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 90%] Building CXX object src/CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/cstranslate_app.cc make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 90%] Built target hhmake-avx2 make -f src/CMakeFiles/hhblits_omp-avx2.dir/build.make src/CMakeFiles/hhblits_omp-avx2.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/hhblits_omp-avx2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/hhblits_omp-avx2.dir/build.make src/CMakeFiles/hhblits_omp-avx2.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 91%] Building CXX object src/CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 92%] Linking CXX executable hhalign-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o -o hhalign-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 92%] Built target hhalign-avx2 make -f src/CMakeFiles/hhsearch_omp-avx2.dir/build.make src/CMakeFiles/hhsearch_omp-avx2.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/hhsearch_omp-avx2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/hhsearch_omp-avx2.dir/build.make src/CMakeFiles/hhsearch_omp-avx2.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 93%] Building CXX object src/CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 94%] Linking CXX executable hhconsensus-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o -o hhconsensus-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 94%] Built target hhconsensus-avx2 make -f src/CMakeFiles/hhalign_omp-avx2.dir/build.make src/CMakeFiles/hhalign_omp-avx2.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/hhalign_omp-avx2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/hhalign_omp-avx2.dir/build.make src/CMakeFiles/hhalign_omp-avx2.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 95%] Building CXX object src/CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhblits_omp-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o -o hhblits_omp-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 96%] Built target hhblits_omp-avx2 make -f src/CMakeFiles/hhblits_ca3m-avx2.dir/build.make src/CMakeFiles/hhblits_ca3m-avx2.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src/CMakeFiles/hhblits_ca3m-avx2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make -f src/CMakeFiles/hhblits_ca3m-avx2.dir/build.make src/CMakeFiles/hhblits_ca3m-avx2.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 97%] Building CXX object src/CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhsearch_omp-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o -o hhsearch_omp-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 98%] Built target hhsearch_omp-avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 99%] Linking CXX executable hhalign_omp-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o -o hhalign_omp-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [ 99%] Built target hhalign_omp-avx2 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o -o hhblits_ca3m-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [100%] Built target hhblits_ca3m-avx2 [100%] Linking CXX executable cstranslate-avx2 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o -o cstranslate-avx2 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' [100%] Built target cstranslate-avx2 make[3]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' /usr/bin/cmake -E cmake_progress_start /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd build_avx && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' /usr/bin/cmake -S/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds -B/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/CMakeFiles /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake --color= make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/data /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/data/CMakeFiles/generated.dir/DependInfo.cmake --color= make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build [ 1%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 2%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 3%] Generating ../generated/context_data.crf.h [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex.c cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl context_data.crf > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/context_data.crf.h [ 5%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffutil.c [ 6%] Linking C static library libffindex.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/ranlib libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 6%] Built target ffindex make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 7%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 8%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 8%] Built target hhviterbialgorithm_with_celloff make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/cs /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 9%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/aa.cc [ 10%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 10%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 10%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_compress.cpp [ 11%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 11%] Built target hhviterbialgorithm_and_ss [ 12%] Generating ../generated/context_data.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl context_data.lib > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/context_data.lib.h [ 13%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/as.cc cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/context_data.crf.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/context_data.crf.h.tmp [ 14%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/assert_helpers.cc cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/context_data.crf.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/context_data.crf.h [ 15%] Generating ../generated/cs219.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl cs219.lib > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/cs219.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/cs219.lib.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/cs219.lib.h.tmp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/cs219.lib.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/cs219.lib.h [ 16%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/blosum_matrix.cc [ 17%] Linking CXX static library libA3M_COMPRESS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 17%] Built target A3M_COMPRESS make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 19%] Linking C executable ffindex_apply cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 [ 20%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/getopt_pp.cc /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 20%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/context_data.lib.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/context_data.lib.h.tmp [ 21%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_reduce.c [ 22%] Linking C executable ffindex_reduce cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 22%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 23%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_build.c cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/context_data.lib.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated/context_data.lib.h make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 23%] Built target generated make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend [ 24%] Linking C executable ffindex_build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake --color= cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 25%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta.c [ 25%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend [ 26%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake --color= cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/log.cc make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 27%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_get.c [ 28%] Linking C executable ffindex_from_fasta cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 29%] Linking C executable ffindex_get cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 29%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 30%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_modify.c [ 30%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 31%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_unpack.c [ 32%] Linking C executable ffindex_modify cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a [ 33%] Linking C executable ffindex_unpack cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/application.cc [ 34%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 35%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_order.c [ 35%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make -f src/CMakeFiles/a3m_extract-avx.dir/build.make src/CMakeFiles/a3m_extract-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/a3m_extract-avx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/a3m_extract-avx.dir/build.make src/CMakeFiles/a3m_extract-avx.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 36%] Building CXX object src/CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_extract.cpp make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 37%] Linking C executable ffindex_order cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a [ 38%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta_with_split.c make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 39%] Linking C executable ffindex_from_fasta_with_split cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 39%] Built target ffindex_order make -f src/CMakeFiles/a3m_reduce-avx.dir/build.make src/CMakeFiles/a3m_reduce-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/a3m_reduce-avx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/a3m_reduce-avx.dir/build.make src/CMakeFiles/a3m_reduce-avx.dir/build [ 39%] Built target ffindex_from_fasta_with_split make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/a3m_database_reduce-avx.dir/build.make src/CMakeFiles/a3m_database_reduce-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/a3m_database_reduce-avx.dir/DependInfo.cmake --color= [ 40%] Building CXX object src/CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_reduce.cpp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/a3m_database_reduce-avx.dir/build.make src/CMakeFiles/a3m_database_reduce-avx.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 41%] Building CXX object src/CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_reduce.cpp [ 42%] Linking CXX executable a3m_extract-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o -o a3m_extract-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a [ 43%] Linking CXX static library libCS_OBJECTS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' /usr/bin/ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o [ 43%] Built target a3m_extract-avx make -f src/CMakeFiles/a3m_database_extract-avx.dir/build.make src/CMakeFiles/a3m_database_extract-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/a3m_database_extract-avx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/a3m_database_extract-avx.dir/build.make src/CMakeFiles/a3m_database_extract-avx.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 44%] Building CXX object src/CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_extract.cpp /usr/bin/ranlib libCS_OBJECTS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 45%] Linking CXX executable a3m_reduce-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-avx.dir/link.txt --verbose=1 [ 45%] Built target CS_OBJECTS make -f src/CMakeFiles/a3m_database_filter-avx.dir/build.make src/CMakeFiles/a3m_database_filter-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/a3m_database_filter-avx.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o -o a3m_reduce-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/a3m_database_filter-avx.dir/build.make src/CMakeFiles/a3m_database_filter-avx.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 46%] Building CXX object src/CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_filter.cpp [ 47%] Linking CXX executable a3m_database_reduce-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o -o a3m_database_reduce-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 47%] Built target a3m_reduce-avx make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.cpp [ 49%] Linking CXX executable a3m_database_extract-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o -o a3m_database_extract-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 49%] Built target a3m_database_reduce-avx [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhdecl.cpp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 50%] Built target a3m_database_extract-avx [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhit.cpp [ 52%] Linking CXX executable a3m_database_filter-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o -o a3m_database_filter-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhmatrices.cpp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 53%] Built target a3m_database_filter-avx [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalign.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhitlist.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd 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object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhutil.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/util.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhforwardalgorithm.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhmm.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.h:6, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriordecoderrunner.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhfullalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhmmsimd.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriormatrix.cpp [ 68%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbi.cpp [ 69%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && 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/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbimatrix.cpp [ 73%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF 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-fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbirunner.cpp [ 78%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhfunc.cpp [ 79%] Linking CXX static library libHH_OBJECTS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/ranlib libHH_OBJECTS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 79%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-avx.dir/build.make src/CMakeFiles/hhblits-avx.dir/depend make -f src/CMakeFiles/hhmake-avx.dir/build.make src/CMakeFiles/hhmake-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/hhblits-avx.dir/DependInfo.cmake --color= make -f src/CMakeFiles/hhfilter-avx.dir/build.make src/CMakeFiles/hhfilter-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/hhmake-avx.dir/DependInfo.cmake --color= make -f src/CMakeFiles/hhsearch-avx.dir/build.make src/CMakeFiles/hhsearch-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/hhfilter-avx.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/hhsearch-avx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/hhmake-avx.dir/build.make src/CMakeFiles/hhmake-avx.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/hhsearch-avx.dir/build.make src/CMakeFiles/hhsearch-avx.dir/build make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/hhblits-avx.dir/build.make src/CMakeFiles/hhblits-avx.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/hhfilter-avx.dir/build.make src/CMakeFiles/hhfilter-avx.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 80%] Building CXX object src/CMakeFiles/hhmake-avx.dir/hhmake.cpp.o [ 81%] Building CXX object src/CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-avx.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-avx.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-avx.dir/hhmake.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhmake.cpp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_app.cpp [ 82%] Building CXX object src/CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_app.cpp [ 83%] Building CXX object src/CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhfilter.cpp [ 84%] Linking CXX executable hhblits-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o -o hhblits-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 84%] Built target hhblits-avx make -f src/CMakeFiles/hhalign-avx.dir/build.make src/CMakeFiles/hhalign-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src 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-I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_app.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic 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libhhviterbialgorithm_with_celloff_and_ss.a [ 89%] Linking CXX executable hhfilter-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o -o hhfilter-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 89%] Built target hhmake-avx make -f src/CMakeFiles/cstranslate-avx.dir/build.make 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/usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/cstranslate_app.cc [ 90%] Built target hhfilter-avx make -f src/CMakeFiles/hhblits_omp-avx.dir/build.make src/CMakeFiles/hhblits_omp-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/hhblits_omp-avx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/hhblits_omp-avx.dir/build.make src/CMakeFiles/hhblits_omp-avx.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 91%] Building CXX object src/CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 92%] Linking CXX executable hhalign-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o -o hhalign-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 92%] Built target hhalign-avx make -f src/CMakeFiles/hhsearch_omp-avx.dir/build.make src/CMakeFiles/hhsearch_omp-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/hhsearch_omp-avx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/hhsearch_omp-avx.dir/build.make src/CMakeFiles/hhsearch_omp-avx.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 93%] Building CXX object src/CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o -o hhblits_omp-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 94%] Built target hhblits_omp-avx make -f src/CMakeFiles/hhalign_omp-avx.dir/build.make src/CMakeFiles/hhalign_omp-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/hhalign_omp-avx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/hhalign_omp-avx.dir/build.make src/CMakeFiles/hhalign_omp-avx.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 95%] Building CXX object src/CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 96%] Linking CXX executable hhconsensus-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o -o hhconsensus-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 97%] Linking CXX executable hhsearch_omp-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o -o hhsearch_omp-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a [ 97%] Built target hhconsensus-avx make -f src/CMakeFiles/hhblits_ca3m-avx.dir/build.make src/CMakeFiles/hhblits_ca3m-avx.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src/CMakeFiles/hhblits_ca3m-avx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make -f src/CMakeFiles/hhblits_ca3m-avx.dir/build.make src/CMakeFiles/hhblits_ca3m-avx.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 98%] Building CXX object src/CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 98%] Built target hhsearch_omp-avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 99%] Linking CXX executable hhalign_omp-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o -o hhalign_omp-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [ 99%] Built target hhalign_omp-avx /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o -o hhblits_ca3m-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [100%] Built target hhblits_ca3m-avx [100%] Linking CXX executable cstranslate-avx cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-avx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o -o cstranslate-avx libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' [100%] Built target cstranslate-avx make[3]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' /usr/bin/cmake -E cmake_progress_start /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx/CMakeFiles 0 make[2]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd build_sse4.1 && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' /usr/bin/cmake -S/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds -B/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/CMakeFiles /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src 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'/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f data/CMakeFiles/generated.dir/build.make 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-ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex.c [ 4%] Generating ../generated/context_data.crf.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl context_data.crf > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/context_data.crf.h [ 5%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffutil.c [ 6%] Linking C static library libffindex.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/ranlib libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 6%] Built target ffindex make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 7%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 8%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 8%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/cs /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 9%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/aa.cc [ 10%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 10%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 10%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_compress.cpp [ 11%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/as.cc [ 12%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 12%] Built target hhviterbialgorithm_and_ss [ 13%] Generating ../generated/context_data.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl context_data.lib > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/context_data.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/context_data.crf.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/context_data.crf.h.tmp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/context_data.crf.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/context_data.crf.h [ 14%] Generating ../generated/cs219.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl cs219.lib > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/cs219.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/cs219.lib.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/cs219.lib.h.tmp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/cs219.lib.h [ 15%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/assert_helpers.cc [ 16%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/blosum_matrix.cc [ 17%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/getopt_pp.cc [ 18%] Linking CXX static library libA3M_COMPRESS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 18%] Built target A3M_COMPRESS make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 19%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 20%] Linking C executable ffindex_apply cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 20%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 21%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_reduce.c [ 22%] Linking C executable ffindex_reduce cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 22%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 23%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_build.c [ 24%] Linking C executable ffindex_build cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 25%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/log.cc [ 25%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 26%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta.c [ 27%] Linking C executable ffindex_from_fasta cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 28%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/application.cc cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/context_data.lib.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/context_data.lib.h.tmp [ 28%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 29%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_get.c cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/context_data.lib.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated/context_data.lib.h make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 30%] Linking C executable ffindex_get cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 30%] Built target generated make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 30%] Built target ffindex_get [ 31%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake --color= cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_modify.c make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 32%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_order.c [ 33%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_unpack.c [ 34%] Linking C executable ffindex_order cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 35%] Linking C executable ffindex_unpack cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 [ 36%] Linking C executable ffindex_modify cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a [ 36%] Built target ffindex_order /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 36%] Built target ffindex_unpack make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make -f src/CMakeFiles/a3m_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_extract-sse4.1.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/a3m_extract-sse4.1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/a3m_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_extract-sse4.1.dir/build [ 37%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta_with_split.c make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 38%] Building CXX object src/CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_extract.cpp [ 38%] Built target ffindex_modify make -f src/CMakeFiles/a3m_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_reduce-sse4.1.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/a3m_reduce-sse4.1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/a3m_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_reduce-sse4.1.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 39%] Building CXX object src/CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_reduce.cpp [ 40%] Linking C executable ffindex_from_fasta_with_split cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 40%] Built target ffindex_from_fasta_with_split make -f src/CMakeFiles/a3m_database_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_database_reduce-sse4.1.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/a3m_database_reduce-sse4.1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/a3m_database_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_database_reduce-sse4.1.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 41%] Linking CXX executable a3m_extract-sse4.1 [ 42%] Building CXX object src/CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_reduce.cpp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o -o a3m_extract-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 42%] Built target a3m_extract-sse4.1 make -f src/CMakeFiles/a3m_database_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_database_extract-sse4.1.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/a3m_database_extract-sse4.1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/a3m_database_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_database_extract-sse4.1.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 43%] Building CXX object src/CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_extract.cpp [ 44%] Linking CXX executable a3m_reduce-sse4.1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o -o a3m_reduce-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a [ 45%] Linking CXX static library libCS_OBJECTS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o [ 46%] Linking CXX executable a3m_database_reduce-sse4.1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o -o a3m_database_reduce-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 46%] Built target a3m_reduce-sse4.1 make -f src/CMakeFiles/a3m_database_filter-sse4.1.dir/build.make src/CMakeFiles/a3m_database_filter-sse4.1.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/a3m_database_filter-sse4.1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/a3m_database_filter-sse4.1.dir/build.make src/CMakeFiles/a3m_database_filter-sse4.1.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' /usr/bin/ranlib libCS_OBJECTS.a [ 47%] Building CXX object src/CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_filter.cpp [ 47%] Built target a3m_database_reduce-sse4.1 [ 48%] Linking CXX executable a3m_database_extract-sse4.1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o -o a3m_database_extract-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 48%] Built target a3m_database_extract-sse4.1 [ 49%] Linking CXX executable a3m_database_filter-sse4.1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-sse4.1.dir/link.txt --verbose=1 [ 49%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o -o a3m_database_filter-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhdecl.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.cpp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhit.cpp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 52%] Built target a3m_database_filter-sse4.1 [ 53%] Building 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/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhmatrices.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o 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src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhitlist.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhutil.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/util.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhforwardalgorithm.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhmm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriordecoderrunner.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.h:6, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhfullalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhmmsimd.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbi.cpp [ 69%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhbacktracemac.cpp [ 70%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhmacalgorithm.cpp [ 71%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 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-I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbimatrix.cpp [ 73%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhbackwardalgorithm.cpp [ 74%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src 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/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/hhmake-sse4.1.dir/DependInfo.cmake --color= make -f src/CMakeFiles/hhsearch-sse4.1.dir/build.make src/CMakeFiles/hhsearch-sse4.1.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/hhfilter-sse4.1.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds 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-Wl,-z,now -rdynamic CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o -o hhblits-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o -o hhmake-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: 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src/CMakeFiles/cstranslate-sse4.1.dir/build.make src/CMakeFiles/cstranslate-sse4.1.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/cstranslate-sse4.1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/cstranslate-sse4.1.dir/build.make src/CMakeFiles/cstranslate-sse4.1.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 90%] Building CXX object src/CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/cstranslate_app.cc make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 90%] Built target hhfilter-sse4.1 make -f src/CMakeFiles/hhblits_omp-sse4.1.dir/build.make src/CMakeFiles/hhblits_omp-sse4.1.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/hhblits_omp-sse4.1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/hhblits_omp-sse4.1.dir/build.make src/CMakeFiles/hhblits_omp-sse4.1.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 91%] Building CXX object src/CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 92%] Linking CXX executable hhalign-sse4.1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o -o hhalign-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 92%] Built target hhalign-sse4.1 make -f src/CMakeFiles/hhsearch_omp-sse4.1.dir/build.make src/CMakeFiles/hhsearch_omp-sse4.1.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/hhsearch_omp-sse4.1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/hhsearch_omp-sse4.1.dir/build.make src/CMakeFiles/hhsearch_omp-sse4.1.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 93%] Building CXX object src/CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-sse4.1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o -o hhblits_omp-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 94%] Built target hhblits_omp-sse4.1 make -f src/CMakeFiles/hhalign_omp-sse4.1.dir/build.make src/CMakeFiles/hhalign_omp-sse4.1.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/hhalign_omp-sse4.1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/hhalign_omp-sse4.1.dir/build.make src/CMakeFiles/hhalign_omp-sse4.1.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 95%] Building CXX object src/CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 96%] Linking CXX executable hhconsensus-sse4.1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o -o hhconsensus-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 96%] Built target hhconsensus-sse4.1 make -f src/CMakeFiles/hhblits_ca3m-sse4.1.dir/build.make src/CMakeFiles/hhblits_ca3m-sse4.1.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src/CMakeFiles/hhblits_ca3m-sse4.1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make -f src/CMakeFiles/hhblits_ca3m-sse4.1.dir/build.make src/CMakeFiles/hhblits_ca3m-sse4.1.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 97%] Building CXX object src/CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhsearch_omp-sse4.1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o -o hhsearch_omp-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 98%] Built target hhsearch_omp-sse4.1 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 99%] Linking CXX executable hhalign_omp-sse4.1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o -o hhalign_omp-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [ 99%] Built target hhalign_omp-sse4.1 [100%] Linking CXX executable hhblits_ca3m-sse4.1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o -o hhblits_ca3m-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [100%] Built target hhblits_ca3m-sse4.1 [100%] Linking CXX executable cstranslate-sse4.1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-sse4.1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o -o cstranslate-sse4.1 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' [100%] Built target cstranslate-sse4.1 make[3]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' /usr/bin/cmake -E cmake_progress_start /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1/CMakeFiles 0 make[2]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd build_ssse3 && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' /usr/bin/cmake -S/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds -B/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/CMakeFiles /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/data /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/data/CMakeFiles/generated.dir/DependInfo.cmake --color= make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake --color= make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex.c make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 2%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o [ 3%] Generating ../generated/context_data.crf.h [ 4%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl context_data.crf > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/context_data.crf.h [ 5%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffutil.c [ 6%] Linking C static library libffindex.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/ranlib libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 6%] Built target ffindex make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 7%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 8%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 8%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/cs /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 9%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/aa.cc [ 10%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/as.cc [ 11%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 11%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 11%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_compress.cpp [ 12%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 12%] Built target hhviterbialgorithm_and_ss [ 13%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/assert_helpers.cc [ 14%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/blosum_matrix.cc cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/context_data.crf.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/context_data.crf.h.tmp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/context_data.crf.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/context_data.crf.h [ 15%] Linking CXX static library libA3M_COMPRESS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake [ 16%] Generating ../generated/context_data.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 [ 17%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/getopt_pp.cc cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated /usr/bin/ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl context_data.lib > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/context_data.lib.h [ 18%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/log.cc /usr/bin/ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 18%] Built target A3M_COMPRESS make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 19%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 20%] Linking C executable ffindex_apply cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 20%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 21%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_reduce.c [ 22%] Linking C executable ffindex_reduce cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 23%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/application.cc [ 23%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 24%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_build.c [ 25%] Linking C executable ffindex_build cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 26%] Generating ../generated/cs219.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl cs219.lib > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/cs219.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/cs219.lib.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/cs219.lib.h.tmp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/cs219.lib.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/cs219.lib.h make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build [ 26%] Built target ffindex_build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake --color= [ 27%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta.c make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 28%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_get.c [ 29%] Linking C executable ffindex_from_fasta cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 [ 30%] Linking C executable ffindex_get cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 30%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake --color= [ 30%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 31%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_modify.c make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 32%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_unpack.c [ 33%] Linking C executable ffindex_modify cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/context_data.lib.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/context_data.lib.h.tmp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 34%] Linking CXX static library libCS_OBJECTS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake [ 35%] Linking C executable ffindex_unpack cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/context_data.lib.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated/context_data.lib.h make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 35%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 36%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_order.c [ 37%] Linking C executable ffindex_order cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a [ 37%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 38%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 38%] Built target generated make -f src/CMakeFiles/a3m_extract-ssse3.dir/build.make src/CMakeFiles/a3m_extract-ssse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/a3m_extract-ssse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/a3m_extract-ssse3.dir/build.make src/CMakeFiles/a3m_extract-ssse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 39%] Building CXX object src/CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_extract.cpp [ 40%] Linking C executable ffindex_from_fasta_with_split cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a /usr/bin/ranlib libCS_OBJECTS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 40%] Built target ffindex_order make -f src/CMakeFiles/a3m_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_reduce-ssse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/a3m_reduce-ssse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/a3m_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_reduce-ssse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 41%] Building CXX object src/CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_reduce.cpp [ 41%] Built target ffindex_from_fasta_with_split make -f src/CMakeFiles/a3m_database_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_database_reduce-ssse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/a3m_database_reduce-ssse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/a3m_database_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_database_reduce-ssse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 42%] Building CXX object src/CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_reduce.cpp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 43%] Linking CXX executable a3m_database_reduce-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o -o a3m_database_reduce-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a [ 44%] Linking CXX executable a3m_reduce-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o -o a3m_reduce-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a [ 44%] Built target CS_OBJECTS make -f src/CMakeFiles/a3m_database_extract-ssse3.dir/build.make src/CMakeFiles/a3m_database_extract-ssse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/a3m_database_extract-ssse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/a3m_database_extract-ssse3.dir/build.make src/CMakeFiles/a3m_database_extract-ssse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 45%] Linking CXX executable a3m_extract-ssse3 [ 46%] Building CXX object src/CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-ssse3.dir/link.txt --verbose=1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_extract.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o -o a3m_extract-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 46%] Built target a3m_database_reduce-ssse3 make -f src/CMakeFiles/a3m_database_filter-ssse3.dir/build.make src/CMakeFiles/a3m_database_filter-ssse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/a3m_database_filter-ssse3.dir/DependInfo.cmake --color= [ 46%] Built target a3m_extract-ssse3 make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/a3m_database_filter-ssse3.dir/build.make src/CMakeFiles/a3m_database_filter-ssse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 47%] Building CXX object src/CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_filter.cpp make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 47%] Built target a3m_reduce-ssse3 [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhdecl.cpp [ 50%] Linking CXX executable a3m_database_extract-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o -o a3m_database_extract-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 50%] Built target a3m_database_extract-ssse3 [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhit.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhmatrices.cpp [ 53%] Linking CXX executable a3m_database_filter-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script 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-I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalign.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhitlist.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriordecoder.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhutil.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/util.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhforwardalgorithm.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhmm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriordecoderrunner.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhfullalignment.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.h:6, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhmmsimd.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriormatrix.cpp [ 68%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbi.cpp [ 69%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhbacktracemac.cpp [ 70%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhmacalgorithm.cpp [ 71%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF 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src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbimatrix.cpp [ 73%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x 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-fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhalfalignment.cpp [ 77%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 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-I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhfunc.cpp [ 79%] Linking CXX static library libHH_OBJECTS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o 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-I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_app.cpp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/hhsearch-ssse3.dir/build.make src/CMakeFiles/hhsearch-ssse3.dir/build [ 81%] Building CXX object src/CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o [ 82%] Building CXX object src/CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o make[4]: 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[ 83%] Building CXX object src/CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_app.cpp [ 84%] Linking CXX executable hhsearch-ssse3 [ 85%] Linking CXX executable hhmake-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-ssse3.dir/link.txt --verbose=1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o -o hhsearch-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o -o hhmake-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a [ 86%] Linking CXX executable hhblits-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o -o hhblits-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 86%] Built target hhmake-ssse3 make -f src/CMakeFiles/hhalign-ssse3.dir/build.make src/CMakeFiles/hhalign-ssse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/hhalign-ssse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/hhalign-ssse3.dir/build.make src/CMakeFiles/hhalign-ssse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 87%] Building CXX object src/CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_app.cpp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 87%] Built target hhsearch-ssse3 make -f src/CMakeFiles/hhconsensus-ssse3.dir/build.make src/CMakeFiles/hhconsensus-ssse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/hhconsensus-ssse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/hhconsensus-ssse3.dir/build.make src/CMakeFiles/hhconsensus-ssse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 88%] Building CXX object src/CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhconsensus.cpp [ 88%] Built target hhblits-ssse3 make -f src/CMakeFiles/cstranslate-ssse3.dir/build.make src/CMakeFiles/cstranslate-ssse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/cstranslate-ssse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/cstranslate-ssse3.dir/build.make src/CMakeFiles/cstranslate-ssse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 89%] Building CXX object src/CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/cstranslate_app.cc [ 90%] Linking CXX executable hhfilter-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o -o hhfilter-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 90%] Built target hhfilter-ssse3 make -f src/CMakeFiles/hhblits_omp-ssse3.dir/build.make src/CMakeFiles/hhblits_omp-ssse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/hhblits_omp-ssse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/hhblits_omp-ssse3.dir/build.make src/CMakeFiles/hhblits_omp-ssse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 91%] Building CXX object src/CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 92%] Linking CXX executable hhalign-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic 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'/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/hhsearch_omp-ssse3.dir/build.make src/CMakeFiles/hhsearch_omp-ssse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 93%] Building CXX object src/CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 94%] Linking CXX executable hhconsensus-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o -o hhconsensus-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 94%] Built target hhconsensus-ssse3 make -f src/CMakeFiles/hhalign_omp-ssse3.dir/build.make src/CMakeFiles/hhalign_omp-ssse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/hhalign_omp-ssse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/hhalign_omp-ssse3.dir/build.make src/CMakeFiles/hhalign_omp-ssse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 95%] Building CXX object src/CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 96%] Linking CXX executable hhblits_omp-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o -o hhblits_omp-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 96%] Built target hhblits_omp-ssse3 make -f src/CMakeFiles/hhblits_ca3m-ssse3.dir/build.make src/CMakeFiles/hhblits_ca3m-ssse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src/CMakeFiles/hhblits_ca3m-ssse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make -f src/CMakeFiles/hhblits_ca3m-ssse3.dir/build.make src/CMakeFiles/hhblits_ca3m-ssse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 97%] Building CXX object src/CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhsearch_omp-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o -o hhsearch_omp-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Built target hhsearch_omp-ssse3 [ 99%] Linking CXX executable hhalign_omp-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o -o hhalign_omp-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [ 99%] Built target hhalign_omp-ssse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o -o hhblits_ca3m-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [100%] Built target hhblits_ca3m-ssse3 [100%] Linking CXX executable cstranslate-ssse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-ssse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o -o cstranslate-ssse3 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' [100%] Built target cstranslate-ssse3 make[3]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' /usr/bin/cmake -E cmake_progress_start /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3/CMakeFiles 0 make[2]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd build_sse3 && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' /usr/bin/cmake -S/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds -B/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/CMakeFiles /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake --color= make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/data /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/data/CMakeFiles/generated.dir/DependInfo.cmake --color= make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake --color= make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o [ 2%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex.c cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build [ 3%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 4%] Generating ../generated/context_data.crf.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl context_data.crf > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/context_data.crf.h [ 5%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffutil.c [ 6%] Linking C static library libffindex.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/ranlib libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 6%] Built target ffindex make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 7%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 8%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o [ 9%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' /usr/bin/ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 9%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/cs /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake --color= [ 9%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 10%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/aa.cc make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 10%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_compress.cpp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/context_data.crf.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/context_data.crf.h.tmp [ 11%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/context_data.crf.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/context_data.crf.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o [ 12%] Generating ../generated/context_data.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl context_data.lib > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/context_data.lib.h /usr/bin/ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 13%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/as.cc [ 13%] Built target hhviterbialgorithm_and_ss make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 14%] Linking CXX static library libA3M_COMPRESS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake [ 15%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld /usr/bin/ranlib libA3M_COMPRESS.a [ 16%] Linking C executable ffindex_apply make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 16%] Built target A3M_COMPRESS make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 17%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_reduce.c [ 17%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake --color= [ 18%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/assert_helpers.cc [ 19%] Linking C executable ffindex_reduce cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_build.c [ 20%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend [ 21%] Linking C executable ffindex_build cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake --color= /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 22%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta.c make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 22%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake --color= [ 23%] Linking C executable ffindex_from_fasta cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 24%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_get.c make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 25%] Linking C executable ffindex_get cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a [ 25%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 26%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_modify.c [ 27%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/blosum_matrix.cc [ 28%] Linking C executable ffindex_modify cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 28%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 29%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_unpack.c [ 29%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake --color= [ 30%] Linking C executable ffindex_unpack cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 31%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_order.c cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/context_data.lib.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/context_data.lib.h.tmp [ 32%] Linking C executable ffindex_order cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 32%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/context_data.lib.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/context_data.lib.h [ 33%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 34%] Generating ../generated/cs219.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl cs219.lib > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/cs219.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/cs219.lib.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/cs219.lib.h.tmp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/cs219.lib.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated/cs219.lib.h make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 34%] Built target ffindex_order make -f src/CMakeFiles/a3m_extract-sse3.dir/build.make src/CMakeFiles/a3m_extract-sse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/a3m_extract-sse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/a3m_extract-sse3.dir/build.make src/CMakeFiles/a3m_extract-sse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 35%] Building CXX object src/CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_extract.cpp [ 35%] Built target generated make -f src/CMakeFiles/a3m_reduce-sse3.dir/build.make src/CMakeFiles/a3m_reduce-sse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/a3m_reduce-sse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/a3m_reduce-sse3.dir/build.make src/CMakeFiles/a3m_reduce-sse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 36%] Building CXX object src/CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_reduce.cpp [ 37%] Linking C executable ffindex_from_fasta_with_split cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 37%] Built target ffindex_from_fasta_with_split make -f src/CMakeFiles/a3m_database_reduce-sse3.dir/build.make src/CMakeFiles/a3m_database_reduce-sse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/a3m_database_reduce-sse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/a3m_database_reduce-sse3.dir/build.make src/CMakeFiles/a3m_database_reduce-sse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 38%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/getopt_pp.cc [ 39%] Building CXX object src/CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_reduce.cpp [ 40%] Linking CXX executable a3m_extract-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o -o a3m_extract-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a [ 41%] Linking CXX executable a3m_reduce-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o -o a3m_reduce-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 41%] Built target a3m_extract-sse3 make -f src/CMakeFiles/a3m_database_extract-sse3.dir/build.make src/CMakeFiles/a3m_database_extract-sse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/a3m_database_extract-sse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/a3m_database_extract-sse3.dir/build.make src/CMakeFiles/a3m_database_extract-sse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 42%] Building CXX object src/CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_extract.cpp [ 42%] Built target a3m_reduce-sse3 make -f src/CMakeFiles/a3m_database_filter-sse3.dir/build.make src/CMakeFiles/a3m_database_filter-sse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/a3m_database_filter-sse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/a3m_database_filter-sse3.dir/build.make src/CMakeFiles/a3m_database_filter-sse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 43%] Building CXX object src/CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_filter.cpp [ 44%] Linking CXX executable a3m_database_extract-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o -o a3m_database_extract-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a [ 45%] Linking CXX executable a3m_database_reduce-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-sse3.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o -o a3m_database_reduce-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a [ 45%] Built target a3m_database_extract-sse3 make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 46%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/log.cc [ 46%] Built target a3m_database_reduce-sse3 [ 47%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/application.cc [ 48%] Linking CXX executable a3m_database_filter-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o -o a3m_database_filter-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 48%] Built target a3m_database_filter-sse3 [ 49%] Linking CXX static library libCS_OBJECTS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/ranlib libCS_OBJECTS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 49%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o 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/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhdecl.cpp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhit.cpp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhmatrices.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalign.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhitlist.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriordecoder.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhutil.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhmm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriordecoderrunner.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.h:6, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhfullalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhmmsimd.cpp [ 67%] Building CXX object 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/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriormatrix.cpp [ 68%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbi.cpp [ 69%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhbacktracemac.cpp [ 70%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhmacalgorithm.cpp [ 71%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char 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-D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbimatrix.cpp [ 73%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhbackwardalgorithm.cpp [ 74%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/ffindexdatabase.cpp [ 75%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 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-I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhalfalignment.cpp [ 77%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbirunner.cpp [ 78%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde 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/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_app.cpp [ 83%] Building CXX object src/CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o.d -o 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/usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o -o hhblits-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a [ 87%] Linking CXX executable hhmake-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o -o hhmake-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a [ 88%] Linking CXX executable hhfilter-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o -o hhfilter-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 88%] Built target hhmake-sse3 [ 88%] Built target hhblits-sse3 make -f src/CMakeFiles/hhconsensus-sse3.dir/build.make src/CMakeFiles/hhconsensus-sse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/hhconsensus-sse3.dir/DependInfo.cmake --color= make -f src/CMakeFiles/cstranslate-sse3.dir/build.make src/CMakeFiles/cstranslate-sse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/cstranslate-sse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/hhconsensus-sse3.dir/build.make src/CMakeFiles/hhconsensus-sse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/cstranslate-sse3.dir/build.make src/CMakeFiles/cstranslate-sse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 89%] Building CXX object src/CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhconsensus.cpp [ 90%] Building CXX object src/CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/cstranslate_app.cc [ 90%] Built target hhfilter-sse3 make -f src/CMakeFiles/hhblits_omp-sse3.dir/build.make src/CMakeFiles/hhblits_omp-sse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/hhblits_omp-sse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/hhblits_omp-sse3.dir/build.make src/CMakeFiles/hhblits_omp-sse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 91%] Building CXX object src/CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 92%] Linking CXX executable hhalign-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o -o hhalign-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 92%] Built target hhalign-sse3 make -f src/CMakeFiles/hhsearch_omp-sse3.dir/build.make src/CMakeFiles/hhsearch_omp-sse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/hhsearch_omp-sse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/hhsearch_omp-sse3.dir/build.make src/CMakeFiles/hhsearch_omp-sse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 93%] Building CXX object src/CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 94%] Linking CXX executable hhconsensus-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o -o hhconsensus-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 94%] Built target hhconsensus-sse3 make -f src/CMakeFiles/hhalign_omp-sse3.dir/build.make src/CMakeFiles/hhalign_omp-sse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/hhalign_omp-sse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/hhalign_omp-sse3.dir/build.make src/CMakeFiles/hhalign_omp-sse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 95%] Building CXX object src/CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 96%] Linking CXX executable hhblits_omp-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o -o hhblits_omp-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 96%] Built target hhblits_omp-sse3 make -f src/CMakeFiles/hhblits_ca3m-sse3.dir/build.make src/CMakeFiles/hhblits_ca3m-sse3.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src/CMakeFiles/hhblits_ca3m-sse3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make -f src/CMakeFiles/hhblits_ca3m-sse3.dir/build.make src/CMakeFiles/hhblits_ca3m-sse3.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 97%] Building CXX object src/CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhsearch_omp-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o -o hhsearch_omp-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a [ 99%] Linking CXX executable hhalign_omp-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o -o hhalign_omp-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 99%] Built target hhsearch_omp-sse3 make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [ 99%] Built target hhalign_omp-sse3 /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o -o hhblits_ca3m-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [100%] Built target hhblits_ca3m-sse3 [100%] Linking CXX executable cstranslate-sse3 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o -o cstranslate-sse3 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' [100%] Built target cstranslate-sse3 make[3]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' /usr/bin/cmake -E cmake_progress_start /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3/CMakeFiles 0 make[2]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd build_plain && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' /usr/bin/cmake -S/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds -B/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/CMakeFiles /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake --color= make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/data /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/data/CMakeFiles/generated.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 1%] Generating ../generated/context_data.crf.h make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl context_data.crf > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/context_data.crf.h make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex.c [ 3%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 4%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 5%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffutil.c [ 6%] Linking C static library libffindex.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/ranlib libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 6%] Built target ffindex make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 7%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp [ 8%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 8%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/cs /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 9%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/aa.cc [ 10%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/ranlib libhhviterbialgorithm_with_celloff.a [ 11%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' /usr/bin/ranlib libhhviterbialgorithm_and_ss.a [ 11%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend [ 12%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake --color= cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/as.cc make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 12%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_compress.cpp [ 12%] Built target hhviterbialgorithm_and_ss [ 13%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/assert_helpers.cc cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/context_data.crf.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/context_data.crf.h.tmp [ 14%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/blosum_matrix.cc cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/context_data.crf.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/context_data.crf.h [ 15%] Generating ../generated/context_data.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl context_data.lib > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/context_data.lib.h [ 16%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/getopt_pp.cc [ 17%] Linking CXX static library libA3M_COMPRESS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 17%] Built target A3M_COMPRESS make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake --color= [ 18%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/log.cc make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 19%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 20%] Linking C executable ffindex_apply cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 20%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 21%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_reduce.c [ 22%] Linking C executable ffindex_reduce cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 23%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/cs && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/application.cc [ 23%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 24%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_build.c [ 25%] Generating ../generated/cs219.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/cmake/xxdi.pl cs219.lib > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/cs219.lib.h cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/cs219.lib.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/cs219.lib.h.tmp cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/cs219.lib.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/cs219.lib.h make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 26%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta.c [ 27%] Linking C executable ffindex_build cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 28%] Linking C executable ffindex_from_fasta cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a [ 28%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 29%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_get.c cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/context_data.lib.h > /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/context_data.lib.h.tmp [ 29%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend [ 30%] Linking C executable ffindex_get make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake --color= cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a [ 31%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_modify.c make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && mv -f /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/context_data.lib.h.tmp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated/context_data.lib.h make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 31%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 32%] Linking C executable ffindex_modify [ 33%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_unpack.c /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 34%] Linking C executable ffindex_unpack cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a [ 34%] Built target generated make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake --color= [ 34%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake --color= make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 35%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 36%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cc -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ext -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src/ffindex_order.c [ 36%] Built target ffindex_unpack make -f src/CMakeFiles/a3m_extract-plain.dir/build.make src/CMakeFiles/a3m_extract-plain.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/a3m_extract-plain.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/a3m_extract-plain.dir/build.make src/CMakeFiles/a3m_extract-plain.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 37%] Building CXX object src/CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_extract.cpp [ 38%] Linking C executable ffindex_order cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a [ 39%] Linking C executable ffindex_from_fasta_with_split cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/cc -std=c99 -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 40%] Linking CXX static library libCS_OBJECTS.a cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 [ 40%] Built target ffindex_order [ 40%] Built target ffindex_from_fasta_with_split make -f src/CMakeFiles/a3m_reduce-plain.dir/build.make src/CMakeFiles/a3m_reduce-plain.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/a3m_reduce-plain.dir/DependInfo.cmake --color= make -f src/CMakeFiles/a3m_database_reduce-plain.dir/build.make src/CMakeFiles/a3m_database_reduce-plain.dir/depend /usr/bin/ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/a3m_database_reduce-plain.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/a3m_reduce-plain.dir/build.make src/CMakeFiles/a3m_reduce-plain.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/a3m_database_reduce-plain.dir/build.make src/CMakeFiles/a3m_database_reduce-plain.dir/build [ 41%] Building CXX object src/CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_reduce.cpp make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 42%] Building CXX object src/CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_reduce.cpp [ 43%] Linking CXX executable a3m_extract-plain cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-plain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o -o a3m_extract-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 43%] Built target a3m_extract-plain make -f src/CMakeFiles/a3m_database_extract-plain.dir/build.make src/CMakeFiles/a3m_database_extract-plain.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/a3m_database_extract-plain.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/a3m_database_extract-plain.dir/build.make src/CMakeFiles/a3m_database_extract-plain.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 44%] Building CXX object src/CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_extract.cpp [ 45%] Linking CXX executable a3m_reduce-plain cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-plain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o -o a3m_reduce-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a /usr/bin/ranlib libCS_OBJECTS.a [ 46%] Linking CXX executable a3m_database_reduce-plain cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-plain.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o -o a3m_database_reduce-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 46%] Built target a3m_reduce-plain make -f src/CMakeFiles/a3m_database_filter-plain.dir/build.make src/CMakeFiles/a3m_database_filter-plain.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/a3m_database_filter-plain.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/a3m_database_filter-plain.dir/build.make src/CMakeFiles/a3m_database_filter-plain.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 47%] Building CXX object src/CMakeFiles/a3m_database_filter-plain.dir/a3m_database_filter.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-plain.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-plain.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-plain.dir/a3m_database_filter.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/a3m_database_filter.cpp [ 47%] Built target a3m_database_reduce-plain make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 48%] Linking CXX executable a3m_database_extract-plain cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-plain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o -o a3m_database_extract-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a [ 48%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.cpp [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhdecl.cpp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 50%] Built target a3m_database_extract-plain [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhhit.cpp [ 52%] Linking CXX executable a3m_database_filter-plain cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-plain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_filter-plain.dir/a3m_database_filter.cpp.o -o a3m_database_filter-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhmatrices.cpp make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 53%] Built target a3m_database_filter-plain [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src 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CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhposteriordecoderrunner.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhviterbialgorithm.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.h:6, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhalignment.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde 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src/CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs/cstranslate_app.cc [ 90%] Built target hhsearch-plain make -f src/CMakeFiles/hhblits_omp-plain.dir/build.make src/CMakeFiles/hhblits_omp-plain.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/hhblits_omp-plain.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f 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src/CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 92%] Linking CXX executable hhalign-plain cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-plain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign-plain.dir/hhblits_app.cpp.o -o hhalign-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 92%] Built target hhalign-plain make -f src/CMakeFiles/hhsearch_omp-plain.dir/build.make src/CMakeFiles/hhsearch_omp-plain.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/hhsearch_omp-plain.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/hhsearch_omp-plain.dir/build.make src/CMakeFiles/hhsearch_omp-plain.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 93%] Building CXX object src/CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp [ 94%] Linking CXX executable hhconsensus-plain cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-plain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhconsensus-plain.dir/hhconsensus.cpp.o -o hhconsensus-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 94%] Built target hhconsensus-plain make -f src/CMakeFiles/hhalign_omp-plain.dir/build.make src/CMakeFiles/hhalign_omp-plain.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/hhalign_omp-plain.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/hhalign_omp-plain.dir/build.make src/CMakeFiles/hhalign_omp-plain.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 95%] Building CXX object src/CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhblits_omp-plain cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-plain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o -o hhblits_omp-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 96%] Built target hhblits_omp-plain make -f src/CMakeFiles/hhblits_ca3m-plain.dir/build.make src/CMakeFiles/hhblits_ca3m-plain.dir/depend make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/CMakeFiles/hhblits_ca3m-plain.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make -f src/CMakeFiles/hhblits_ca3m-plain.dir/build.make src/CMakeFiles/hhblits_ca3m-plain.dir/build make[4]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object src/CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/c++ -DOPENMP -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/generated -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/ffindex/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simde -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/lib/simd -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src -I/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/cs -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o -c /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp [ 98%] Linking CXX executable hhsearch_omp-plain cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-plain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o -o hhsearch_omp-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [ 98%] Built target hhsearch_omp-plain /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_ca3m.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 99%] Linking CXX executable hhblits_ca3m-plain cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-plain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o -o hhblits_ca3m-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/11/cstdio:42, from /usr/include/c++/11/ext/string_conversions.h:43, from /usr/include/c++/11/bits/basic_string.h:6606, from /usr/include/c++/11/string:55, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/fstream:38, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits.h:11, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhsearch.h:34, from /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/src/hhblits_omp.cpp:8: /usr/include/x86_64-linux-gnu/bits/stdio2.h:70:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [100%] Linking CXX executable hhalign_omp-plain cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-plain.dir/link.txt --verbose=1 [100%] Built target hhblits_ca3m-plain /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o -o hhalign_omp-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [100%] Built target hhalign_omp-plain [100%] Linking CXX executable cstranslate-plain cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-plain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o -o cstranslate-plain libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' [100%] Built target cstranslate-plain make[3]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' /usr/bin/cmake -E cmake_progress_start /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/CMakeFiles 0 make[2]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make[1]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' rm -Rf /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/testdir mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/testdir cd build_plain/src && \ for file in *-plain ; \ do ln -s /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/src/${file} /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/testdir/${file%%-plain} ; done cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/data && PATH=$PATH:/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain/lib/ffindex/src/:/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/testdir ./test.sh - 12:53:15.802 INFO: query.a3m is in A2M, A3M or FASTA format - 12:53:16.497 INFO: Alternative alignment: 0 - 12:53:16.504 INFO: 1 alignments done - 12:53:16.540 INFO: Realigning 1 HMM-HMM alignments using Maximum Accuracy algorithm Query sp|Q5VUD6|FA69B_HUMAN Protein FAM69B OS=Homo sapiens GN=FAM69B PE=2 SV=3 Match_columns 431 No_of_seqs 49 out of 118 Neff 4.29221 Searched_HMMs 1 Date Fri Nov 26 12:53:16 2021 Command hhalign -i query.a3m -o result.hhr -t query.a3m No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 sp|Q5VUD6|FA69B_HUMAN Protein 100.0 9E-168 9E-168 1246.9 0.0 431 1-431 1-431 (431) query.a3m 0 32127 378 0 query.a3m 0 32666 31 0 query.a3m 0 32666 140 0 Reading context library for pseudocounts from internal ... Reading abstract state alphabet from internal ... Processing entry: query.a3m Adding cs-pseudocounts (admix=0.30) ... - 12:53:18.402 INFO: Searching 1 column state sequences. - 12:53:18.556 INFO: query.a3m is in A2M, A3M or FASTA format - 12:53:18.581 INFO: Iteration 1 - 12:53:18.996 INFO: Prefiltering database - 12:53:19.466 INFO: HMMs passed 1st prefilter (gapless profile-profile alignment) : 1 - 12:53:19.467 INFO: HMMs passed 2nd prefilter (gapped profile-profile alignment) : 1 - 12:53:19.467 INFO: HMMs passed 2nd prefilter and not found in previous iterations : 1 - 12:53:19.467 INFO: Scoring 1 HMMs using HMM-HMM Viterbi alignment - 12:53:19.537 INFO: Alternative alignment: 0 - 12:53:19.542 INFO: 1 alignments done - 12:53:19.542 INFO: Alternative alignment: 1 - 12:53:19.548 INFO: 1 alignments done - 12:53:19.548 INFO: Alternative alignment: 2 - 12:53:19.548 INFO: Alternative alignment: 3 - 12:53:19.937 INFO: Premerge done - 12:53:19.937 INFO: Realigning 2 HMM-HMM alignments using Maximum Accuracy algorithm - 12:53:19.976 INFO: 2 sequences belonging to 2 database HMMs found with an E-value < 0.001 Query sp|Q5VUD6|FA69B_HUMAN Protein FAM69B OS=Homo sapiens GN=FAM69B PE=2 SV=3 Match_columns 431 No_of_seqs 59 out of 118 Neff 4.2743 Searched_HMMs 1 Date Fri Nov 26 12:53:19 2021 Command hhblits -i query.a3m -o result.hhr -d single -blasttab blits_app_res -n 1 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 sp|Q5VUD6|FA69B_HUMAN Protein 100.0 1E-167 5E-169 1249.5 0.0 431 1-431 1-431 (431) 2 sp|Q5VUD6|FA69B_HUMAN Protein 0.2 8.3 0.38 16.3 0.0 17 78-97 344-360 (431) - 12:53:20.049 INFO: Searching 1 column state sequences. - 12:53:20.108 INFO: Thread 0 query.a3m - 12:53:20.122 INFO: query.a3m is in A2M, A3M or FASTA format - 12:53:20.137 INFO: Iteration 1 - 12:53:20.652 INFO: Prefiltering database - 12:53:21.165 INFO: HMMs passed 1st prefilter (gapless profile-profile alignment) : 1 - 12:53:21.165 INFO: HMMs passed 2nd prefilter (gapped profile-profile alignment) : 1 - 12:53:21.165 INFO: HMMs passed 2nd prefilter and not found in previous iterations : 1 - 12:53:21.165 INFO: Scoring 1 HMMs using HMM-HMM Viterbi alignment - 12:53:21.187 INFO: Alternative alignment: 0 - 12:53:21.193 INFO: 1 alignments done - 12:53:21.193 INFO: Alternative alignment: 1 - 12:53:21.198 INFO: 1 alignments done - 12:53:21.198 INFO: Alternative alignment: 2 - 12:53:21.198 INFO: Alternative alignment: 3 - 12:53:21.739 INFO: Premerge done - 12:53:21.740 INFO: Realigning 2 HMM-HMM alignments using Maximum Accuracy algorithm - 12:53:21.760 INFO: 2 sequences belonging to 2 database HMMs found with an E-value < 0.001 - 12:53:21.904 INFO: query.a3m is in A2M, A3M or FASTA format - 12:53:21.926 INFO: Searching 1 database HHMs without prefiltering - 12:53:21.926 INFO: Iteration 1 - 12:53:22.413 INFO: Scoring 1 HMMs using HMM-HMM Viterbi alignment - 12:53:22.482 INFO: Alternative alignment: 0 - 12:53:22.488 INFO: 1 alignments done - 12:53:22.488 INFO: Alternative alignment: 1 - 12:53:22.499 INFO: 1 alignments done - 12:53:22.499 INFO: Alternative alignment: 2 - 12:53:22.499 INFO: Alternative alignment: 3 - 12:53:22.864 INFO: Premerge done - 12:53:22.864 INFO: Realigning 2 HMM-HMM alignments using Maximum Accuracy algorithm - 12:53:22.910 INFO: 2 sequences belonging to 2 database HMMs found with an E-value < 0.001 Query sp|Q5VUD6|FA69B_HUMAN Protein FAM69B OS=Homo sapiens GN=FAM69B PE=2 SV=3 Match_columns 431 No_of_seqs 49 out of 118 Neff 4.29221 Searched_HMMs 1 Date Fri Nov 26 12:53:22 2021 Command hhsearch -i query.a3m -o result.hhr -d single -blasttab search_app_res No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 sp|Q5VUD6|FA69B_HUMAN Protein 100.0 5E-169 5E-169 1249.5 0.0 431 1-431 1-431 (431) 2 sp|Q5VUD6|FA69B_HUMAN Protein 0.2 0.38 0.38 16.3 0.0 17 78-97 344-360 (431) - 12:53:23.556 INFO: Thread 0 query.a3m - 12:53:23.576 INFO: query.a3m is in A2M, A3M or FASTA format - 12:53:23.599 INFO: Searching 1 database HHMs without prefiltering - 12:53:23.599 INFO: Iteration 1 - 12:53:24.146 INFO: Scoring 1 HMMs using HMM-HMM Viterbi alignment - 12:53:24.175 INFO: Alternative alignment: 0 - 12:53:24.181 INFO: 1 alignments done - 12:53:24.181 INFO: Alternative alignment: 1 - 12:53:24.187 INFO: 1 alignments done - 12:53:24.187 INFO: Alternative alignment: 2 - 12:53:24.187 INFO: Alternative alignment: 3 - 12:53:24.773 INFO: Premerge done - 12:53:24.773 INFO: Realigning 2 HMM-HMM alignments using Maximum Accuracy algorithm - 12:53:24.800 INFO: 2 sequences belonging to 2 database HMMs found with an E-value < 0.001 make[1]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/hhsuite/usr/libexec/hhsuite/bin for SIMD in avx2 avx sse4.1 ssse3 sse3 plain ; do \ dh_auto_install --builddirectory build_${SIMD} ; \ done cd build_avx2 && make -j4 install DESTDIR=/build/hhsuite-yaBgg2/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' /usr/bin/cmake -S/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds -B/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_reduce -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_apply -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_build -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_get -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_modify -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_unpack -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_order -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.crf -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.lib -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/cs219.lib -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.phr -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.pin -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.psq -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhmake-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhfilter-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhconsensus-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_extract-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_reduce-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_reduce-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_extract-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_filter-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/cstranslate-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_omp-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch_omp-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign_omp-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_ca3m-avx2 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/a3m.py -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/addss.pl -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/Align.pm -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/check_a3m.py -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/cif2fasta.py -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/ffindex.py -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/get_a3m_size.py -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hh_reader.py -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.pl -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.py -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/HHPaths.pm -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhsuitedb.py -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/mergeali.pl -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/multithread.pl -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdb2fasta.pl -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.pl -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.py -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/reformat.pl -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/renumberpdb.pl -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx2' cd build_avx && make -j4 install DESTDIR=/build/hhsuite-yaBgg2/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' /usr/bin/cmake -S/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds -B/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_reduce -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_apply -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_build -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_get -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_modify -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_unpack -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_order -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.crf -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.lib -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/cs219.lib -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.psq -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhmake-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhfilter-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhconsensus-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_extract-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_reduce-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_reduce-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_extract-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_filter-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/cstranslate-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_omp-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch_omp-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign_omp-avx -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_ca3m-avx -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_avx' cd build_sse4.1 && make -j4 install DESTDIR=/build/hhsuite-yaBgg2/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' /usr/bin/cmake -S/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds -B/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_reduce -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_apply -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_build -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_get -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_modify -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_unpack -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_order -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.crf -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.lib -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/cs219.lib -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.psq -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhmake-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhfilter-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhconsensus-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_extract-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_reduce-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_reduce-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_extract-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_filter-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/cstranslate-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_omp-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch_omp-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign_omp-sse4.1 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_ca3m-sse4.1 -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse4.1' cd build_ssse3 && make -j4 install DESTDIR=/build/hhsuite-yaBgg2/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' /usr/bin/cmake -S/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds -B/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_reduce -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_apply -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_build -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_get -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_modify -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_unpack -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_order -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.crf -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.lib -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/cs219.lib -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.psq -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhmake-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhfilter-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhconsensus-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_extract-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_reduce-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_reduce-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_extract-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_filter-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/cstranslate-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_omp-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch_omp-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign_omp-ssse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_ca3m-ssse3 -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_ssse3' cd build_sse3 && make -j4 install DESTDIR=/build/hhsuite-yaBgg2/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' /usr/bin/cmake -S/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds -B/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_reduce -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_apply -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_build -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_get -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_modify -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_unpack -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_order -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.crf -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.lib -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/cs219.lib -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.psq -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhmake-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhfilter-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhconsensus-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_extract-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_reduce-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_reduce-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_extract-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_filter-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/cstranslate-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_omp-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch_omp-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign_omp-sse3 -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_ca3m-sse3 -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_sse3' cd build_plain && make -j4 install DESTDIR=/build/hhsuite-yaBgg2/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' /usr/bin/cmake -S/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds -B/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_reduce -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_apply -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_build -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_get -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_modify -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_unpack -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_order -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.crf -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/context_data.lib -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/cs219.lib -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/data/do_not_delete.psq -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhmake-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhfilter-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhconsensus-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_extract-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_reduce-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_reduce-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_extract-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/a3m_database_filter-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/cstranslate-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_omp-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhsearch_omp-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhalign_omp-plain -- Installing: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/bin/hhblits_ca3m-plain -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/build_plain' mkdir -p /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/hhsuite/usr/bin dh_install -phhsuite debian/bin/simd-dispatch /usr/libexec/hhsuite/ for prog in hhalign hhalign_omp hhblits hhblits_omp hhblits_ca3m hhconsensus hhfilter hhmake hhsearch hhsearch_omp a3m_extract a3m_reduce a3m_database_reduce a3m_database_extract a3m_database_filter cstranslate ; do dh_install usr/bin/${prog}* /usr/libexec/hhsuite/; done cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/hhsuite/usr/bin \ && for prog in hhalign hhalign_omp hhblits hhblits_omp hhblits_ca3m hhconsensus hhfilter hhmake hhsearch hhsearch_omp a3m_extract a3m_reduce a3m_database_reduce a3m_database_extract a3m_database_filter; do \ ln -s ../libexec/hhsuite/simd-dispatch ${prog} ; done cd /build/hhsuite-yaBgg2/hhsuite-3.3.0+ds/debian/hhsuite/usr/libexec/hhsuite/bin \ && for prog in cstranslate ; do \ ln -s ../simd-dispatch ${prog} ; done dh_install -phhsuite usr/bin/ffindex_* usr/bin/ make[1]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman-arch make[1]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhalign" 'debian/hhsuite/usr/bin/hhalign' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhalign.1' export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhblits" 'debian/hhsuite/usr/bin/hhblits' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhblits.1' export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhblits_omp" 'debian/hhsuite/usr/bin/hhblits_omp' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhblits_omp.1' export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhconsensus" 'debian/hhsuite/usr/bin/hhconsensus' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhconsensus.1' export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhfilter" 'debian/hhsuite/usr/bin/hhfilter' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhfilter.1' export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhmake" 'debian/hhsuite/usr/bin/hhmake' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhmake.1' export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhsearch" 'debian/hhsuite/usr/bin/hhsearch' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhsearch.1' dh_installman --arch make[1]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms-arch make[1]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' dh_fixperms chmod -x debian/hhsuite/usr/share/hhsuite/scripts/*.pm make[1]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a debian/rules override_dh_gencontrol make[1]: Entering directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-5), " make[1]: Leaving directory '/build/hhsuite-yaBgg2/hhsuite-3.3.0+ds' dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'hhsuite' in '../hhsuite_3.3.0+ds-6_amd64.deb'. dpkg-deb: building package 'hhsuite-dbgsym' in '../hhsuite-dbgsym_3.3.0+ds-6_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../hhsuite_3.3.0+ds-6_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/hhsuite-yaBgg2 /tmp/hhsuite-3.3.0+ds-6xwrdp5s5 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.qpvcWftvGz... I: success in 2721.2409 seconds md5: hhsuite-dbgsym_3.3.0+ds-6_amd64.deb: OK md5: hhsuite_3.3.0+ds-6_amd64.deb: OK sha1: hhsuite-dbgsym_3.3.0+ds-6_amd64.deb: OK sha1: hhsuite_3.3.0+ds-6_amd64.deb: OK sha256: hhsuite-dbgsym_3.3.0+ds-6_amd64.deb: OK sha256: hhsuite_3.3.0+ds-6_amd64.deb: OK Checksums: OK